AlfalfaGEDB | MS.gene060823

M. sativa cultivar XinJiangDaYe / MS.gene060823

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060823.t1	XP_013457790.1	99.2	133	1	0	845	977	845	977	9.50E-68	268.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060823.t1	O49545	36.3	91	52	2	12	98	4	92	4.7e-07	58.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060823.t1	A0A072UR50	99.2	133	1	0	845	977	845	977	6.9e-68	268.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene060823	-0.839433	1.59E-57	-1.69E-46
MS.gene049217	MS.gene060823	-0.805065	1.60E-49	-1.69E-46
MS.gene049222	MS.gene060823	-0.835134	2.00E-56	-1.69E-46
MS.gene049285	MS.gene060823	-0.814368	1.60E-51	-1.69E-46
MS.gene049320	MS.gene060823	-0.829161	6.01E-55	-1.69E-46
MS.gene049402	MS.gene060823	0.801981	6.97E-49	-1.69E-46
MS.gene049633	MS.gene060823	-0.823632	1.25E-53	-1.69E-46
MS.gene050082	MS.gene060823	0.826985	2.01E-54	-1.69E-46
MS.gene050163	MS.gene060823	-0.825397	4.79E-54	-1.69E-46
MS.gene050165	MS.gene060823	-0.850255	1.91E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060823.t1	MTR_4g105520	97.544	977	24	0	1	977	1	977	0.0	1885
MS.gene060823.t1	MTR_4g094790	47.463	887	456	5	30	909	30	913	0.0	724
MS.gene060823.t1	MTR_2g437730	41.463	738	377	4	171	881	69	778	8.51e-160	500
MS.gene060823.t1	MTR_2g437730	36.921	734	404	10	13	691	5	734	5.59e-117	385
MS.gene060823.t1	MTR_2g437730	32.051	312	135	4	602	837	68	378	1.77e-29	127
MS.gene060823.t1	MTR_2g437730	36.199	221	114	3	648	841	66	286	9.92e-23	105
MS.gene060823.t1	MTR_0400s0040	37.260	832	446	10	28	856	29	787	2.13e-136	439
MS.gene060823.t1	MTR_0400s0040	33.977	259	171	0	73	331	531	789	1.07e-30	131
MS.gene060823.t1	MTR_0365s0030	37.260	832	446	10	28	856	29	787	2.13e-136	439
MS.gene060823.t1	MTR_0365s0030	33.977	259	171	0	73	331	531	789	1.07e-30	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060823.t1	AT4G20140	49.029	875	434	5	35	901	26	896	0.0	752
MS.gene060823.t1	AT5G44700	45.757	872	464	5	35	901	29	896	0.0	702
MS.gene060823.t1	AT1G17230	40.473	677	381	6	231	892	79	748	6.28e-137	436
MS.gene060823.t1	AT1G17230	35.361	707	403	8	12	692	7	685	1.68e-103	346
MS.gene060823.t1	AT1G17230	34.340	265	173	1	576	840	64	327	8.07e-36	147
MS.gene060823.t1	AT1G17230	40.473	677	381	6	231	892	79	748	1.59e-135	435
MS.gene060823.t1	AT1G17230	35.361	707	403	8	12	692	7	685	2.38e-102	345
MS.gene060823.t1	AT1G17230	34.340	265	173	1	576	840	64	327	9.05e-36	147
MS.gene060823.t1	AT1G17230	40.473	677	381	6	231	892	79	748	2.82e-135	435
MS.gene060823.t1	AT1G17230	35.361	707	403	8	12	692	7	685	3.46e-102	345

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Find 199 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTAGATCATTAAGC+TGG	0.503564	8.2:+19486272	None:intergenic
AAACAATAACTTCAGTGGCA+AGG	0.618862	8.2:-19486095	MS.gene060823:CDS
AAACCTTCATCGTCTCCGGC+TGG	0.538347	8.2:-19486335	MS.gene060823:CDS
AAAGAAAGAGGAAAGTAGAT+GGG	0.528997	8.2:-19485378	MS.gene060823:CDS
AACAAAAGAAGTATTAAGTA+TGG	0.439541	8.2:+19488094	None:intergenic
AAGAAAATTGTACAACCAAT+AGG	0.392480	8.2:+19488127	None:intergenic
AAGAAAGAGGAAAGTAGATG+GGG	0.614896	8.2:-19485377	MS.gene060823:CDS
AAGATCCAACTGTTGTATTG+AGG	0.550572	8.2:+19487053	None:intergenic
AAGGAATTTGGCCTTCAAGA+TGG	0.508682	8.2:+19485654	None:intergenic
AAGTTGCAAGTTCTTAGAAT+AGG	0.463219	8.2:-19487702	MS.gene060823:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGAGGAAAGTAGAT+GGG	-	chr8.2:19487997-19488016	MS.gene060823:CDS	30.0%
AAGTTGCAAGTTCTTAGAAT+AGG	-	chr8.2:19485673-19485692	MS.gene060823:CDS	30.0%
AATTGTTGAAGGAATTATGC+CGG	+	chr8.2:19487441-19487460	None:intergenic	30.0%
ACAAGTTGCAGTTATAATTG+TGG	-	chr8.2:19487859-19487878	MS.gene060823:CDS	30.0%
ATTAGGTTTCCTAAAGATGA+AGG	+	chr8.2:19487599-19487618	None:intergenic	30.0%
CTAATATTTCCAATTTCACG+AGG	+	chr8.2:19486447-19486466	None:intergenic	30.0%
CTATACTCAAATTATCTCTC+TGG	-	chr8.2:19485619-19485638	MS.gene060823:CDS	30.0%
GAATTATTCTTATCTGGTGA+AGG	+	chr8.2:19488085-19488104	None:intergenic	30.0%
GACTCTTCAATTTGACATTA+AGG	+	chr8.2:19486161-19486180	None:intergenic	30.0%
GGAAATATTAGTACTTTGGA+AGG	-	chr8.2:19486456-19486475	MS.gene060823:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	19485232	19488165	19485232	ID=MS.gene060823
chr8.2	mRNA	19485232	19488165	19485232	ID=MS.gene060823.t1;Parent=MS.gene060823
chr8.2	exon	19485232	19488165	19485232	ID=MS.gene060823.t1.exon1;Parent=MS.gene060823.t1
chr8.2	CDS	19485232	19488165	19485232	ID=cds.MS.gene060823.t1;Parent=MS.gene060823.t1

Gene Sequence

>MS.gene060823

ATGAAACAAATATATTCCTATTGGTTGTACAATTTTCTTCTGTTATTGACCATACTTAATACTTCTTTTGTTGCAACACTAAGTAATGATGCTGATGCAACAGACCTTAACTTGCTTCTCAGGATTAAATCAGAATTGGTTGATCCATTAGGAGCCATGAGCAACTGGTCTCCAACAACTCATGTATGCAACTGGAATGGAATAACATGTGATGTTAATCAGAAACATGTTATAGGTTTGAATCTCTATGATTCAGGAATATCAGGTTCCATTTCAGTTGAGTTAAGTAATCTCATTTCTCTTCAAACACTTGATTTATCTTCAAATTCACTTAATGGTTCCATACCTTCAGAGCTAGGTAAACTTCAAAATCTAAGAACACTTCAACTATACTCAAATTATCTCTCTGGTAACATTCCCAAAGAGATAGGTAATTTGAACAAGTTGCAAGTTCTTAGAATAGGAGACAACTTTTTGACAGGTGGCATTCCACCTAGCATCATCAACTTGAAAGAGTTGACAGTGTTAGGTGTAGGTTACTGCCACTTAAATGGAACCATACCAGTTGGAATTGGTAAATTGAAGAATCTTACATCACTTGATTTACAAATGAATAGTTTTAGTGGCCATATACCTGAAGAGATACAAGGCTGTGAAAACCTTCAAAATTTTGCAGCATCAAACAACATGCTTGAAGGAAACATTCCTTCCTCTATAGGGTCCCTTAAATCATTGAAAATTATTAACCTTGCCAATAACTCTCTATCTGGACCGATTCCGGCATCGTTGAGTTATCTTTCTAACTTGACATACCTGAATTTGCTTGGAAACAAACTAAATGGTGAAATTCCATATGAGCTTAATAGTTTGATCCAATTGCAGAAGCTAGACTTGTCTGGAAACAACTTTTCTGGATCAATACCTCTCCTTAATGTCAAATTGAAGAGTCTTGAAACACTAGTTCTTTCTGATAATGCTTTGACAGGTACCATTCCAAGAAGTTTCTGTTTCAAAGGTTCAAAGCTTCAACAACTTTTCTTGGCTAGAAATATTCTATCTGGAAAATTTCCCTTGGAGTTACTCAGCTGTTCCTCAATACAACAGTTGGATCTTTCTGGTAATAGCTTTGAAGGTGAAATTCCATCTACCATAGACAAGCTTCAGAACCTCACAGATCTTGTACTCAACAACAACACCTTTGTTGGATCACTGCCTCGTGAAATTGGAAATATTAGTACTTTGGAAGGTCTTTTCCTATTTGGAAATTCTTTAACAGGTGAAATTCCAGTGGAGATTGGAAAGCTGAAAAATTTGAACACAATTTACCTCTATGATAACCAAATGTCTGGATTCATACCAAGAGAGTTAACAAACTGCACAAGTTTAAGAGAAATCGATTTCTTTGGAAATCATTTTACAGGCCACATTCCTGAGACGATAGGGAAGCTGAAAAACTTGGTACTTCTTCATTTGAGGCAAAATGATTTTCATGGTCCAATCCCTCCAAGTTTAGGGTACTGCAAAAGTCTTCAGATATTGGCCTTAGCCGATAACAAACTTTCAGGTTCAATTCCACACACATTCAGTTACCTTTCAGAACTTTTTAAGATTACCCTTTACAACAACTCCTTTGAAGGACCTATCCCTCACTCACTTTCTTCTCTCAAAAATTTCAAAATCATAAATTTTTCACACAACAAGTTCAGTGGAAGTTTTTTTCCTCTAACTGCTTCAAATTCTCTCACTCTTCTTGATTTGACTAACAACAGTTTCTCAGGTCCTATCCCTTCTAATCTAGCCAATTCCAGAAACCTTCATCGTCTCCGGCTGGCATACAATAATCTCACAGGAACCATTCCTTCTGAATTTGGCCAGCTTAATGATCTAAACTTTTTTGATTTATCACATAACAGTTTAACAGGAGAAGTTCCACCTCAACTCTCAAACTCGCGGAAAATAGAACACATTTTGCTAAGTAACAACAGATTGAGTGGCGAAATACCTCGGTGGTTGGGAAATTTCCAACAACTTGGTGAGTTAGATCTCTCAAACAATAACTTCAGTGGCAAGGTACCTGCTGAAATTGGTAACTGCTCAAACTTACTTAAGCTTTCTCTCCATCACAACAATTTGTCTGGTGAAATTCCTCAAGAGATTGGGAACCTCATTTCTCTTAATGTCTTCAACATTCAAAGCAATAGTCTCTCCGGCATAATTCCTTCAACAATTCATCAATGCAAGAAGCTCTATGAGCTAAGGCTCTCACAAAATTTCTTGACAGGTACTATACCAGTTGAGCTAGGAGGGCTTGACGAGTTACAAGTGATATTGGATTTGAGTAAAAATCTCTTCGCTGGTGAGATTCCTTCATCTTTAGGAAACCTAATGAAGCTAGAAAGATTAAACCTATCTTCCAATCAACTTCAAGGAAAAATTCCTACTTCACTTGGTAAACTTACAAGCCTGCATGTGTTGAATCTCTCAAATAACCATCTTGAAGGCCAAATTCCTTCTACCTTTTCAGGGTTTCCAAGAAGCTCTTTCTTGAACAACAGTCGGTTATGTGGCCCGCCGTTAGTATCTTGCTCAGGATCAACATCAGAAGGGAAAATGCAGCTATCAAACACACAAGTTGCAGTTATAATTGTGGCTATTGTGTTTACTTCAACTGTGATATGCTTAGTTATGTTGTATATAATGCTTAGAATCTGGTGCAACTGGAGAAAAGTTTCCATATCAAATGCAGATGGAGGTGCTGTTGCTACAAAGAAAGAGGAAAGTAGATGGGGTTGCCAAGATCATAAGACAAGGAATGGAGAGTATTGGAATATGAATTCATTTGGATTCATTCCTTCACCAGATAAGAATAATTCAGTAACAACAACTTGCTTCTTTAATCTCAAAATGGAAGCCATGGAAAATGCAAATATATAA

Protein sequence

>MS.gene060823.t1

MKQIYSYWLYNFLLLLTILNTSFVATLSNDADATDLNLLLRIKSELVDPLGAMSNWSPTTHVCNWNGITCDVNQKHVIGLNLYDSGISGSISVELSNLISLQTLDLSSNSLNGSIPSELGKLQNLRTLQLYSNYLSGNIPKEIGNLNKLQVLRIGDNFLTGGIPPSIINLKELTVLGVGYCHLNGTIPVGIGKLKNLTSLDLQMNSFSGHIPEEIQGCENLQNFAASNNMLEGNIPSSIGSLKSLKIINLANNSLSGPIPASLSYLSNLTYLNLLGNKLNGEIPYELNSLIQLQKLDLSGNNFSGSIPLLNVKLKSLETLVLSDNALTGTIPRSFCFKGSKLQQLFLARNILSGKFPLELLSCSSIQQLDLSGNSFEGEIPSTIDKLQNLTDLVLNNNTFVGSLPREIGNISTLEGLFLFGNSLTGEIPVEIGKLKNLNTIYLYDNQMSGFIPRELTNCTSLREIDFFGNHFTGHIPETIGKLKNLVLLHLRQNDFHGPIPPSLGYCKSLQILALADNKLSGSIPHTFSYLSELFKITLYNNSFEGPIPHSLSSLKNFKIINFSHNKFSGSFFPLTASNSLTLLDLTNNSFSGPIPSNLANSRNLHRLRLAYNNLTGTIPSEFGQLNDLNFFDLSHNSLTGEVPPQLSNSRKIEHILLSNNRLSGEIPRWLGNFQQLGELDLSNNNFSGKVPAEIGNCSNLLKLSLHHNNLSGEIPQEIGNLISLNVFNIQSNSLSGIIPSTIHQCKKLYELRLSQNFLTGTIPVELGGLDELQVILDLSKNLFAGEIPSSLGNLMKLERLNLSSNQLQGKIPTSLGKLTSLHVLNLSNNHLEGQIPSTFSGFPRSSFLNNSRLCGPPLVSCSGSTSEGKMQLSNTQVAVIIVAIVFTSTVICLVMLYIMLRIWCNWRKVSISNADGGAVATKKEESRWGCQDHKTRNGEYWNMNSFGFIPSPDKNNSVTTTCFFNLKMEAMENANI