Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59410.t1 | XP_003612072.1 | 95.7 | 484 | 16 | 2 | 1 | 483 | 3 | 482 | 5.10E-264 | 919.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59410.t1 | Q8GW96 | 44.4 | 475 | 222 | 7 | 18 | 481 | 10 | 453 | 5.8e-107 | 389.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59410.t1 | G7KF10 | 95.7 | 484 | 16 | 2 | 1 | 483 | 3 | 482 | 3.7e-264 | 919.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene59410 | -0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene59410 | -0.808962 | 2.39E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene59410 | -0.816026 | 6.84E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene59410 | -0.828601 | 8.21E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene59410 | -0.807867 | 4.10E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene59410 | -0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene055956 | MS.gene59410 | 0.808996 | 2.35E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene59410 | -0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene59410 | -0.811117 | 8.22E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene59410 | -0.804381 | 2.22E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59410.t1 | MTR_5g020990 | 95.661 | 484 | 16 | 2 | 1 | 483 | 3 | 482 | 0.0 | 950 |
| MS.gene59410.t1 | MTR_5g021020 | 58.664 | 479 | 122 | 10 | 1 | 472 | 1 | 410 | 4.90e-179 | 508 |
| MS.gene59410.t1 | MTR_3g103150 | 79.381 | 291 | 50 | 2 | 182 | 472 | 1 | 281 | 2.06e-166 | 471 |
| MS.gene59410.t1 | MTR_5g020980 | 40.552 | 471 | 242 | 8 | 18 | 473 | 9 | 456 | 1.23e-122 | 368 |
| MS.gene59410.t1 | MTR_8g076920 | 40.860 | 465 | 236 | 6 | 14 | 466 | 15 | 452 | 2.20e-120 | 362 |
| MS.gene59410.t1 | MTR_2g076690 | 41.739 | 460 | 228 | 8 | 33 | 484 | 21 | 448 | 3.61e-116 | 350 |
| MS.gene59410.t1 | MTR_2g076970 | 41.215 | 461 | 234 | 8 | 33 | 484 | 14 | 446 | 1.38e-113 | 343 |
| MS.gene59410.t1 | MTR_2g076900 | 40.909 | 462 | 241 | 8 | 33 | 485 | 14 | 452 | 5.86e-112 | 339 |
| MS.gene59410.t1 | MTR_2g076920 | 41.372 | 452 | 230 | 8 | 33 | 479 | 20 | 441 | 1.23e-111 | 338 |
| MS.gene59410.t1 | MTR_2g076710 | 41.348 | 445 | 226 | 8 | 33 | 467 | 19 | 438 | 3.57e-111 | 336 |
| MS.gene59410.t1 | MTR_2g076840 | 41.228 | 456 | 233 | 7 | 33 | 481 | 14 | 441 | 1.43e-110 | 343 |
| MS.gene59410.t1 | MTR_2g076840 | 51.095 | 274 | 119 | 3 | 196 | 467 | 443 | 703 | 1.48e-82 | 270 |
| MS.gene59410.t1 | MTR_2g076990 | 41.565 | 409 | 206 | 6 | 80 | 479 | 2 | 386 | 8.37e-100 | 307 |
| MS.gene59410.t1 | MTR_1g022250 | 38.562 | 459 | 254 | 8 | 23 | 467 | 7 | 451 | 7.40e-97 | 300 |
| MS.gene59410.t1 | MTR_2g030420 | 37.885 | 454 | 259 | 8 | 23 | 467 | 10 | 449 | 7.83e-96 | 298 |
| MS.gene59410.t1 | MTR_6g009553 | 37.744 | 461 | 234 | 9 | 43 | 467 | 5 | 448 | 3.48e-93 | 291 |
| MS.gene59410.t1 | MTR_6g009720 | 38.618 | 492 | 248 | 14 | 5 | 466 | 1 | 468 | 3.79e-93 | 292 |
| MS.gene59410.t1 | MTR_6g009770 | 40.049 | 412 | 206 | 8 | 85 | 467 | 48 | 447 | 1.33e-91 | 288 |
| MS.gene59410.t1 | MTR_6g009540 | 37.045 | 467 | 259 | 9 | 24 | 467 | 5 | 459 | 1.36e-90 | 286 |
| MS.gene59410.t1 | MTR_7g008040 | 36.730 | 471 | 258 | 8 | 22 | 467 | 5 | 460 | 4.49e-90 | 285 |
| MS.gene59410.t1 | MTR_6g009520 | 36.831 | 467 | 260 | 8 | 24 | 467 | 7 | 461 | 2.58e-88 | 280 |
| MS.gene59410.t1 | MTR_1g022245 | 37.650 | 417 | 212 | 8 | 81 | 467 | 63 | 461 | 2.98e-86 | 274 |
| MS.gene59410.t1 | MTR_4g107370 | 34.137 | 498 | 269 | 12 | 22 | 479 | 10 | 488 | 3.42e-86 | 274 |
| MS.gene59410.t1 | MTR_6g042290 | 39.394 | 396 | 204 | 8 | 84 | 467 | 80 | 451 | 3.00e-85 | 271 |
| MS.gene59410.t1 | MTR_2g061820 | 37.981 | 416 | 217 | 10 | 83 | 483 | 67 | 456 | 5.46e-85 | 271 |
| MS.gene59410.t1 | MTR_4g128260 | 34.354 | 457 | 257 | 8 | 20 | 452 | 6 | 443 | 7.87e-84 | 268 |
| MS.gene59410.t1 | MTR_6g009510 | 37.722 | 395 | 171 | 7 | 82 | 467 | 78 | 406 | 1.91e-75 | 244 |
| MS.gene59410.t1 | MTR_5g021000 | 85.366 | 123 | 18 | 0 | 363 | 485 | 1 | 123 | 1.39e-69 | 219 |
| MS.gene59410.t1 | MTR_7g117950 | 33.791 | 364 | 185 | 9 | 109 | 467 | 93 | 405 | 9.18e-66 | 219 |
| MS.gene59410.t1 | MTR_3g092060 | 34.795 | 365 | 182 | 10 | 112 | 467 | 97 | 414 | 1.63e-64 | 217 |
| MS.gene59410.t1 | MTR_6g009660 | 35.946 | 370 | 185 | 8 | 114 | 467 | 78 | 411 | 6.21e-63 | 212 |
| MS.gene59410.t1 | MTR_5g020720 | 59.686 | 191 | 52 | 4 | 282 | 472 | 25 | 190 | 2.24e-61 | 199 |
| MS.gene59410.t1 | MTR_5g021010 | 87.500 | 88 | 11 | 0 | 380 | 467 | 34 | 121 | 3.50e-47 | 159 |
| MS.gene59410.t1 | MTR_8g027200 | 28.103 | 427 | 216 | 13 | 55 | 467 | 39 | 388 | 2.07e-45 | 165 |
| MS.gene59410.t1 | MTR_1g011680 | 41.129 | 124 | 71 | 1 | 346 | 469 | 12 | 133 | 4.63e-23 | 96.3 |
| MS.gene59410.t1 | MTR_3g117230 | 31.902 | 163 | 88 | 6 | 249 | 404 | 166 | 312 | 1.59e-11 | 66.2 |
| MS.gene59410.t1 | MTR_3g112260 | 31.288 | 163 | 89 | 6 | 249 | 404 | 163 | 309 | 2.65e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59410.t1 | AT2G18193 | 44.186 | 473 | 220 | 8 | 25 | 485 | 17 | 457 | 5.27e-134 | 397 |
| MS.gene59410.t1 | AT2G18190 | 43.515 | 478 | 226 | 8 | 12 | 474 | 4 | 452 | 1.58e-131 | 390 |
| MS.gene59410.t1 | AT3G50940 | 44.469 | 461 | 231 | 6 | 10 | 467 | 3 | 441 | 6.85e-130 | 384 |
| MS.gene59410.t1 | AT5G17760 | 43.197 | 463 | 247 | 5 | 15 | 471 | 6 | 458 | 4.09e-123 | 369 |
| MS.gene59410.t1 | AT5G17730 | 42.919 | 459 | 241 | 7 | 12 | 467 | 3 | 443 | 1.52e-120 | 361 |
| MS.gene59410.t1 | AT5G17740 | 43.137 | 459 | 241 | 7 | 15 | 467 | 6 | 450 | 1.22e-119 | 361 |
| MS.gene59410.t1 | AT3G50930 | 42.534 | 442 | 231 | 5 | 34 | 467 | 73 | 499 | 5.91e-117 | 355 |
| MS.gene59410.t1 | AT4G05380 | 39.496 | 476 | 263 | 8 | 10 | 479 | 3 | 459 | 5.90e-109 | 331 |
| MS.gene59410.t1 | AT1G43910 | 37.447 | 470 | 258 | 9 | 10 | 467 | 2 | 447 | 3.86e-98 | 304 |
| MS.gene59410.t1 | AT5G17750 | 38.876 | 427 | 215 | 6 | 15 | 436 | 6 | 391 | 4.90e-97 | 298 |
| MS.gene59410.t1 | AT3G28510 | 41.565 | 409 | 201 | 7 | 82 | 468 | 67 | 459 | 4.13e-96 | 300 |
| MS.gene59410.t1 | AT3G28610 | 39.013 | 446 | 223 | 11 | 55 | 483 | 52 | 465 | 9.00e-94 | 293 |
| MS.gene59410.t1 | AT3G28600 | 37.662 | 462 | 232 | 11 | 33 | 467 | 14 | 446 | 1.31e-93 | 292 |
| MS.gene59410.t1 | AT3G28570 | 36.948 | 498 | 257 | 14 | 1 | 483 | 1 | 456 | 7.88e-90 | 282 |
| MS.gene59410.t1 | AT4G25835 | 34.694 | 441 | 260 | 8 | 27 | 452 | 9 | 436 | 1.00e-89 | 283 |
| MS.gene59410.t1 | AT3G28570 | 37.143 | 490 | 251 | 14 | 9 | 483 | 2 | 449 | 2.89e-89 | 280 |
| MS.gene59410.t1 | AT3G28580 | 37.029 | 478 | 244 | 12 | 13 | 463 | 8 | 455 | 4.75e-89 | 281 |
| MS.gene59410.t1 | AT3G28540 | 35.532 | 470 | 260 | 8 | 19 | 464 | 4 | 454 | 1.96e-88 | 280 |
| MS.gene59410.t1 | AT3G28540 | 35.532 | 470 | 260 | 8 | 19 | 464 | 4 | 454 | 3.00e-88 | 279 |
| MS.gene59410.t1 | AT5G40000 | 36.025 | 483 | 244 | 16 | 12 | 468 | 7 | 450 | 1.40e-87 | 276 |
| MS.gene59410.t1 | AT5G40010 | 36.632 | 475 | 255 | 9 | 13 | 463 | 8 | 460 | 3.11e-87 | 277 |
| MS.gene59410.t1 | AT5G57480 | 33.333 | 465 | 274 | 7 | 27 | 467 | 9 | 461 | 6.64e-85 | 271 |
| MS.gene59410.t1 | AT3G28600 | 45.570 | 316 | 148 | 7 | 165 | 467 | 103 | 407 | 9.58e-82 | 260 |
| MS.gene59410.t1 | AT3G28520 | 44.073 | 329 | 163 | 5 | 155 | 466 | 117 | 441 | 1.11e-81 | 261 |
| MS.gene59410.t1 | AT4G30250 | 33.758 | 471 | 278 | 8 | 20 | 468 | 2 | 460 | 6.24e-81 | 261 |
| MS.gene59410.t1 | AT4G30250 | 33.758 | 471 | 278 | 8 | 20 | 468 | 4 | 462 | 9.53e-81 | 260 |
| MS.gene59410.t1 | AT3G28580 | 35.106 | 470 | 242 | 11 | 13 | 463 | 8 | 433 | 7.54e-77 | 249 |
| MS.gene59410.t1 | AT5G17760 | 40.881 | 318 | 183 | 2 | 15 | 328 | 6 | 322 | 7.05e-75 | 239 |
| MS.gene59410.t1 | AT2G46620 | 32.468 | 462 | 233 | 14 | 25 | 467 | 15 | 416 | 1.52e-68 | 227 |
| MS.gene59410.t1 | AT3G29800 | 37.784 | 352 | 163 | 10 | 123 | 465 | 74 | 378 | 4.22e-60 | 204 |
| MS.gene59410.t1 | AT4G05340 | 55.844 | 77 | 32 | 1 | 344 | 420 | 19 | 93 | 6.85e-21 | 87.8 |
| MS.gene59410.t1 | AT5G43010 | 31.902 | 163 | 88 | 6 | 249 | 404 | 163 | 309 | 9.86e-12 | 67.0 |
| MS.gene59410.t1 | AT1G45000 | 31.902 | 163 | 88 | 6 | 249 | 404 | 163 | 309 | 1.37e-11 | 66.6 |
Find 73 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACAAATTGAAGAGTTAT+TGG | 0.142527 | 5.4:+12842049 | MS.gene59410:CDS |
| CACTTCAAATTGATCAGTTT+TGG | 0.150920 | 5.4:+12839645 | MS.gene59410:CDS |
| CTGGGTCTACTTTGTCCTTA+TGG | 0.184391 | 5.4:-12841908 | None:intergenic |
| TCAAAAGACTATGAAGAAAA+TGG | 0.215368 | 5.4:+12839917 | MS.gene59410:CDS |
| TGAAGTGAAACTTGGTTATT+TGG | 0.217186 | 5.4:-12839629 | None:intergenic |
| TTGATGATATCAAGCTTAAA+TGG | 0.279360 | 5.4:+12839819 | MS.gene59410:CDS |
| CCAGACAAAGTAAACTTTCT+AGG | 0.283489 | 5.4:-12841816 | None:intergenic |
| TTTAGTAGGGATATACTCTT+TGG | 0.296287 | 5.4:-12839699 | None:intergenic |
| GTCTGGTCTGCTTAACTATA+TGG | 0.299508 | 5.4:+12841833 | MS.gene59410:CDS |
| ACCAGACAAGTTTCCAGATA+TGG | 0.299840 | 5.4:+12840426 | MS.gene59410:CDS |
| AAACGTGGTTACTTATTATA+TGG | 0.310407 | 5.4:+12840211 | MS.gene59410:CDS |
| AAGAACTATGTTGTTATGTT+TGG | 0.317224 | 5.4:-12839762 | None:intergenic |
| CCTAGAAAGTTTACTTTGTC+TGG | 0.319922 | 5.4:+12841816 | MS.gene59410:CDS |
| GAAATTTGATGTCTATGATT+TGG | 0.331681 | 5.4:+12840285 | MS.gene59410:CDS |
| AATCTTGGCTTCTAATTACT+TGG | 0.360580 | 5.4:+12841998 | MS.gene59410:CDS |
| GGCCAAAGCATTCAGAATCT+TGG | 0.361371 | 5.4:+12841983 | MS.gene59410:CDS |
| AAGATTCATTCTATGCAATC+TGG | 0.364238 | 5.4:+12840046 | MS.gene59410:CDS |
| CGACCGGGGCGCAACAATGC+TGG | 0.387396 | 5.4:-12841927 | None:intergenic |
| ATCAAAACCATCATCATTGT+TGG | 0.393123 | 5.4:-12839858 | None:intergenic |
| TTCATTTGATTCACTTGCTA+TGG | 0.396517 | 5.4:+12840102 | MS.gene59410:CDS |
| AGCCAAGATTCTGAATGCTT+TGG | 0.400001 | 5.4:-12841985 | None:intergenic |
| TCCATATCTGGAAACTTGTC+TGG | 0.403332 | 5.4:-12840427 | None:intergenic |
| CTTTGGCTGCATAGTAAAGA+TGG | 0.405145 | 5.4:-12839682 | None:intergenic |
| TATTCACTTGTCATTTCTAA+AGG | 0.408003 | 5.4:+12841962 | MS.gene59410:CDS |
| TCTAATTACTTGGACATTGA+AGG | 0.408423 | 5.4:+12842008 | MS.gene59410:CDS |
| TTATATGGTCCACCAGGAAC+TGG | 0.430679 | 5.4:+12840226 | MS.gene59410:CDS |
| TTTAAGGGATTTGTAAGTGT+TGG | 0.439054 | 5.4:-12839726 | None:intergenic |
| ACTTACAAATCCCTTAAAGT+TGG | 0.449216 | 5.4:+12839731 | MS.gene59410:CDS |
| GTTAAATCACTTTGTTTCCA+TGG | 0.449328 | 5.4:-12840070 | None:intergenic |
| ATCTAGTCTTATTGCTGCTA+TGG | 0.454061 | 5.4:+12840252 | MS.gene59410:CDS |
| CAAAAGACTATGAAGAAAAT+GGG | 0.454921 | 5.4:+12839918 | MS.gene59410:CDS |
| GAAGATCCTGATGTTGCTCT+TGG | 0.466250 | 5.4:+12842122 | MS.gene59410:CDS |
| AAGAGAAACGACCAGCCATT+GGG | 0.469890 | 5.4:-12839445 | None:intergenic |
| TCTTCTTCATTCACAAACAT+TGG | 0.471142 | 5.4:+12839464 | MS.gene59410:CDS |
| GACCGGGGCGCAACAATGCT+GGG | 0.473619 | 5.4:-12841926 | None:intergenic |
| GAAAATTCCAACAATGATGA+TGG | 0.483127 | 5.4:+12839851 | MS.gene59410:CDS |
| GATCAATTTGAAGTGAAACT+TGG | 0.486219 | 5.4:-12839637 | None:intergenic |
| AGATACTCTGCCACTACAGC+AGG | 0.486605 | 5.4:-12842089 | None:intergenic |
| GATATTTACGACGAACCATA+AGG | 0.488719 | 5.4:+12841893 | MS.gene59410:CDS |
| GTGAAACTTGGTTATTTGGT+TGG | 0.495911 | 5.4:-12839625 | None:intergenic |
| ATTGTTGCGCCCCGGTCGTA+TGG | 0.497128 | 5.4:+12841932 | MS.gene59410:CDS |
| TTAACTATATGGATGGTTTG+TGG | 0.503709 | 5.4:+12841844 | MS.gene59410:CDS |
| GAAGAGAAACGACCAGCCAT+TGG | 0.504564 | 5.4:-12839446 | None:intergenic |
| ACTTATGAAGCTATAAAAGC+AGG | 0.514777 | 5.4:+12840010 | MS.gene59410:CDS |
| AATATGCATGTCCATACGAC+CGG | 0.522038 | 5.4:-12841943 | None:intergenic |
| ACATTGGTTCAGCATCATCA+TGG | 0.528828 | 5.4:+12839480 | MS.gene59410:CDS |
| GCAAGTGAATCAAATGAAGC+AGG | 0.530314 | 5.4:-12840097 | None:intergenic |
| AATAAGTAACCACGTTTCCA+AGG | 0.530569 | 5.4:-12840205 | None:intergenic |
| CTATAATTGATGATTTAGAT+CGG | 0.531151 | 5.4:+12840143 | MS.gene59410:CDS |
| AGATGTCACCCCTGCTGTAG+TGG | 0.539506 | 5.4:+12842079 | MS.gene59410:CDS |
| GGTCTGCTTAACTATATGGA+TGG | 0.549195 | 5.4:+12841837 | MS.gene59410:CDS |
| GATGGTTTGTGGTCAAGTTG+TGG | 0.563526 | 5.4:+12841855 | MS.gene59410:CDS |
| AGTGCTCCAAGAGCAACATC+AGG | 0.565349 | 5.4:-12842128 | None:intergenic |
| AGACATTGATTGCAATTCAG+AGG | 0.569244 | 5.4:+12840387 | MS.gene59410:CDS |
| TCTTAAAAGCATCATGAATG+TGG | 0.575866 | 5.4:-12839525 | None:intergenic |
| TCATAAGTGCTTAAAACATG+TGG | 0.581742 | 5.4:-12839995 | None:intergenic |
| TCTGTTAGAAGTCTCTCTCA+TGG | 0.584778 | 5.4:-12840347 | None:intergenic |
| GATGCATAGAGATAAAGTAA+TGG | 0.586205 | 5.4:+12839961 | MS.gene59410:CDS |
| TACTTATTATATGGTCCACC+AGG | 0.593809 | 5.4:+12840220 | MS.gene59410:CDS |
| TGATGGAAAACAAGTAGTGG+AGG | 0.599321 | 5.4:+12839790 | MS.gene59410:CDS |
| GACCCAGCATTGTTGCGCCC+CGG | 0.600286 | 5.4:+12841924 | MS.gene59410:CDS |
| ATATGCATGTCCATACGACC+GGG | 0.601008 | 5.4:-12841942 | None:intergenic |
| ATGATATCAAGCTTAAATGG+AGG | 0.601584 | 5.4:+12839822 | MS.gene59410:CDS |
| AGTATAAGGAATATAAGCAT+AGG | 0.601948 | 5.4:+12839894 | MS.gene59410:CDS |
| ATTCTATGCAATCTGGACCA+TGG | 0.603360 | 5.4:+12840053 | MS.gene59410:CDS |
| GTTGGTAAGCCTTGGAAACG+TGG | 0.609302 | 5.4:+12840196 | MS.gene59410:CDS |
| GATACTCTGCCACTACAGCA+GGG | 0.619261 | 5.4:-12842088 | None:intergenic |
| AGAGAAACGACCAGCCATTG+GGG | 0.625399 | 5.4:-12839444 | None:intergenic |
| ATACTCTGCCACTACAGCAG+GGG | 0.676441 | 5.4:-12842087 | None:intergenic |
| GAGAAACGACCAGCCATTGG+GGG | 0.698400 | 5.4:-12839443 | None:intergenic |
| TATGCATGTCCATACGACCG+GGG | 0.711765 | 5.4:-12841941 | None:intergenic |
| TTTGTGGTCAAGTTGTGGAG+AGG | 0.724193 | 5.4:+12841860 | MS.gene59410:CDS |
| GACAAAGTAAACTTTCTAGG+CGG | 0.728578 | 5.4:-12841813 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTTGTATAAAAAAGT+TGG | + | chr5.4:12840178-12840197 | MS.gene59410:CDS | 15.0% |
| !!! | ATGAAATTTCTAAGTTTTAA+GGG | - | chr5.4:12839572-12839591 | None:intergenic | 15.0% |
| !! | AAAGAAAGTTGTCAAAAAAA+TGG | + | chr5.4:12840858-12840877 | MS.gene59410:intron | 20.0% |
| !! | ACATTGTATAAAGAAAGAAA+TGG | - | chr5.4:12840696-12840715 | None:intergenic | 20.0% |
| !!! | AACCATTTTTTGACAATTTT+GGG | + | chr5.4:12841121-12841140 | MS.gene59410:intron | 20.0% |
| !!! | ACTATGTTAAGATACATTTT+TGG | - | chr5.4:12840920-12840939 | None:intergenic | 20.0% |
| !!! | ATAAACTTAATTTTTGACAG+TGG | - | chr5.4:12841605-12841624 | None:intergenic | 20.0% |
| !!! | ATTATAGAGTTTTTTAGATC+AGG | - | chr5.4:12840130-12840149 | None:intergenic | 20.0% |
| !!! | CTATAATTGATGATTTAGAT+CGG | + | chr5.4:12840143-12840162 | MS.gene59410:CDS | 20.0% |
| !!! | GATGAAATTTCTAAGTTTTA+AGG | - | chr5.4:12839573-12839592 | None:intergenic | 20.0% |
| ! | AAACGTGGTTACTTATTATA+TGG | + | chr5.4:12840211-12840230 | MS.gene59410:CDS | 25.0% |
| ! | AAGAACTATGTTGTTATGTT+TGG | - | chr5.4:12839765-12839784 | None:intergenic | 25.0% |
| ! | AAGTTGTGAGTATACATAAT+AGG | + | chr5.4:12840993-12841012 | MS.gene59410:intron | 25.0% |
| ! | AATTATTATTGATGCCTTGA+TGG | + | chr5.4:12841277-12841296 | MS.gene59410:intron | 25.0% |
| ! | ACTATTTGATTGACAACTTA+TGG | + | chr5.4:12840749-12840768 | MS.gene59410:intron | 25.0% |
| ! | AGTACTCTATTTAGATTATG+AGG | + | chr5.4:12840937-12840956 | MS.gene59410:intron | 25.0% |
| ! | AGTATAAGGAATATAAGCAT+AGG | + | chr5.4:12839894-12839913 | MS.gene59410:CDS | 25.0% |
| ! | CAAAAGACTATGAAGAAAAT+GGG | + | chr5.4:12839918-12839937 | MS.gene59410:CDS | 25.0% |
| ! | CTATTTGATTGACAACTTAT+GGG | + | chr5.4:12840750-12840769 | MS.gene59410:intron | 25.0% |
| ! | GAAATTTGATGTCTATGATT+TGG | + | chr5.4:12840285-12840304 | MS.gene59410:CDS | 25.0% |
| ! | TATGTTATTCTACTGATAAG+AGG | - | chr5.4:12841414-12841433 | None:intergenic | 25.0% |
| ! | TCAAAAGACTATGAAGAAAA+TGG | + | chr5.4:12839917-12839936 | MS.gene59410:CDS | 25.0% |
| ! | TCACTTCTTAAGAGAAAAAA+AGG | - | chr5.4:12841193-12841212 | None:intergenic | 25.0% |
| ! | TGAACAAATTGAAGAGTTAT+TGG | + | chr5.4:12842049-12842068 | MS.gene59410:CDS | 25.0% |
| ! | TGTTTAACATAAGATAGAGA+AGG | - | chr5.4:12840487-12840506 | None:intergenic | 25.0% |
| ! | TTTAGTGGTTAATAAAGTAC+TGG | - | chr5.4:12841642-12841661 | None:intergenic | 25.0% |
| !! | ACTTCAAATTGATCAGTTTT+GGG | + | chr5.4:12839646-12839665 | MS.gene59410:CDS | 25.0% |
| !! | ATATTCCTTATACTCCTTTT+TGG | - | chr5.4:12839888-12839907 | None:intergenic | 25.0% |
| !! | GGATATTTTTCCAACTTTAA+GGG | - | chr5.4:12839744-12839763 | None:intergenic | 25.0% |
| !! | TATTCACTTGTCATTTCTAA+AGG | + | chr5.4:12841962-12841981 | MS.gene59410:CDS | 25.0% |
| !! | TATTCCTTATACTCCTTTTT+GGG | - | chr5.4:12839887-12839906 | None:intergenic | 25.0% |
| !! | TGGATATTTTTCCAACTTTA+AGG | - | chr5.4:12839745-12839764 | None:intergenic | 25.0% |
| !! | TTGATGATATCAAGCTTAAA+TGG | + | chr5.4:12839819-12839838 | MS.gene59410:CDS | 25.0% |
| !!! | AAGTGTTGGATATTTTAGTA+GGG | - | chr5.4:12839715-12839734 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTTCTTGAAATTG+TGG | + | chr5.4:12841770-12841789 | MS.gene59410:intron | 25.0% |
| !!! | CAACCATTTTTTGACAATTT+TGG | + | chr5.4:12841120-12841139 | MS.gene59410:intron | 25.0% |
| !!! | CAGATATGGATTTTTTAGAT+GGG | + | chr5.4:12840440-12840459 | MS.gene59410:CDS | 25.0% |
| !!! | TAAGTGTTGGATATTTTAGT+AGG | - | chr5.4:12839716-12839735 | None:intergenic | 25.0% |
| AAAACTGATTGTCTAATTGC+TGG | - | chr5.4:12841504-12841523 | None:intergenic | 30.0% | |
| AAGATTCATTCTATGCAATC+TGG | + | chr5.4:12840046-12840065 | MS.gene59410:CDS | 30.0% | |
| AATCTTGGCTTCTAATTACT+TGG | + | chr5.4:12841998-12842017 | MS.gene59410:CDS | 30.0% | |
| ACTTACAAATCCCTTAAAGT+TGG | + | chr5.4:12839731-12839750 | MS.gene59410:CDS | 30.0% | |
| ACTTATGAAGCTATAAAAGC+AGG | + | chr5.4:12840010-12840029 | MS.gene59410:CDS | 30.0% | |
| ATACATAATAGGATATGAGC+AGG | + | chr5.4:12841004-12841023 | MS.gene59410:intron | 30.0% | |
| ATACTTTCAGCTTAACTTCT+TGG | - | chr5.4:12841534-12841553 | None:intergenic | 30.0% | |
| ATCAAAACCATCATCATTGT+TGG | - | chr5.4:12839861-12839880 | None:intergenic | 30.0% | |
| ATGATATCAAGCTTAAATGG+AGG | + | chr5.4:12839822-12839841 | MS.gene59410:CDS | 30.0% | |
| ATGTCGATACATATAGTGTT+TGG | + | chr5.4:12841036-12841055 | MS.gene59410:intron | 30.0% | |
| CCATCTAAAAAATCCATATC+TGG | - | chr5.4:12840442-12840461 | None:intergenic | 30.0% | |
| CTTAAGAAGTGAGAAAAACA+AGG | + | chr5.4:12841201-12841220 | MS.gene59410:intron | 30.0% | |
| GAAAATTCCAACAATGATGA+TGG | + | chr5.4:12839851-12839870 | MS.gene59410:CDS | 30.0% | |
| GATGCATAGAGATAAAGTAA+TGG | + | chr5.4:12839961-12839980 | MS.gene59410:CDS | 30.0% | |
| GCAAAATGTAAGTCATTTAG+TGG | - | chr5.4:12841657-12841676 | None:intergenic | 30.0% | |
| GTCCCAAAATTGTCAAAAAA+TGG | - | chr5.4:12841126-12841145 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr5.4:12841227-12841246 | MS.gene59410:intron | 30.0% | |
| TCATAAGTGCTTAAAACATG+TGG | - | chr5.4:12839998-12840017 | None:intergenic | 30.0% | |
| TCTAATTACTTGGACATTGA+AGG | + | chr5.4:12842008-12842027 | MS.gene59410:CDS | 30.0% | |
| TCTTCTTCATTCACAAACAT+TGG | + | chr5.4:12839464-12839483 | MS.gene59410:CDS | 30.0% | |
| TCTTGAAATTGTGGAATAGA+TGG | + | chr5.4:12841779-12841798 | MS.gene59410:intron | 30.0% | |
| TGAAGTGAAACTTGGTTATT+TGG | - | chr5.4:12839632-12839651 | None:intergenic | 30.0% | |
| TTAACTATATGGATGGTTTG+TGG | + | chr5.4:12841844-12841863 | MS.gene59410:CDS | 30.0% | |
| TTTAAGGGATTTGTAAGTGT+TGG | - | chr5.4:12839729-12839748 | None:intergenic | 30.0% | |
| TTTAGTAGGGATATACTCTT+TGG | - | chr5.4:12839702-12839721 | None:intergenic | 30.0% | |
| ! | CACTTCAAATTGATCAGTTT+TGG | + | chr5.4:12839645-12839664 | MS.gene59410:CDS | 30.0% |
| ! | GATCAATTTGAAGTGAAACT+TGG | - | chr5.4:12839640-12839659 | None:intergenic | 30.0% |
| ! | GTTAAATCACTTTGTTTCCA+TGG | - | chr5.4:12840073-12840092 | None:intergenic | 30.0% |
| ! | TAATCCCAAAAAGGAGTATA+AGG | + | chr5.4:12839880-12839899 | MS.gene59410:CDS | 30.0% |
| ! | TTCATTTGATTCACTTGCTA+TGG | + | chr5.4:12840102-12840121 | MS.gene59410:CDS | 30.0% |
| ! | TTTTGATGGAAAACAAGTAG+TGG | + | chr5.4:12839787-12839806 | MS.gene59410:CDS | 30.0% |
| !! | AACATAGTTCTTGCTTTTGA+TGG | + | chr5.4:12839773-12839792 | MS.gene59410:CDS | 30.0% |
| !! | ATAAAAAAGTTGGTAAGCCT+TGG | + | chr5.4:12840188-12840207 | MS.gene59410:CDS | 30.0% |
| !! | ATGATTTAGATCGGTTTTTG+AGG | + | chr5.4:12840152-12840171 | MS.gene59410:CDS | 30.0% |
| !! | TCTTAAAAGCATCATGAATG+TGG | - | chr5.4:12839528-12839547 | None:intergenic | 30.0% |
| !!! | CCAGATATGGATTTTTTAGA+TGG | + | chr5.4:12840439-12840458 | MS.gene59410:CDS | 30.0% |
| !!! | GGATTTTTTAGATGGGATTA+AGG | + | chr5.4:12840447-12840466 | MS.gene59410:CDS | 30.0% |
| !!! | TAAGAGGATTTGTTTTGTTC+AGG | - | chr5.4:12841398-12841417 | None:intergenic | 30.0% |
| !!! | TGATAAGACTAGTCTTTTAC+TGG | - | chr5.4:12841443-12841462 | None:intergenic | 30.0% |
| !!! | TGGTTTTGATAATCCCAAAA+AGG | + | chr5.4:12839871-12839890 | MS.gene59410:CDS | 30.0% |
| !!! | TTTGTTTTGTTCAGGTCTAA+TGG | - | chr5.4:12841390-12841409 | None:intergenic | 30.0% |
| AATAAGTAACCACGTTTCCA+AGG | - | chr5.4:12840208-12840227 | None:intergenic | 35.0% | |
| AGAGAAAAAAAGGAAGAGAG+AGG | - | chr5.4:12841183-12841202 | None:intergenic | 35.0% | |
| CCAGACAAAGTAAACTTTCT+AGG | - | chr5.4:12841819-12841838 | None:intergenic | 35.0% | |
| CCTAGAAAGTTTACTTTGTC+TGG | + | chr5.4:12841816-12841835 | MS.gene59410:CDS | 35.0% | |
| GACAAAGTAAACTTTCTAGG+CGG | - | chr5.4:12841816-12841835 | None:intergenic | 35.0% | |
| GATATTTACGACGAACCATA+AGG | + | chr5.4:12841893-12841912 | MS.gene59410:CDS | 35.0% | |
| GTGAAACTTGGTTATTTGGT+TGG | - | chr5.4:12839628-12839647 | None:intergenic | 35.0% | |
| TACTTATTATATGGTCCACC+AGG | + | chr5.4:12840220-12840239 | MS.gene59410:CDS | 35.0% | |
| TCACAAGCGAATATGTATTC+TGG | + | chr5.4:12840964-12840983 | MS.gene59410:intron | 35.0% | |
| ! | AGACATTGATTGCAATTCAG+AGG | + | chr5.4:12840387-12840406 | MS.gene59410:CDS | 35.0% |
| ! | GACTTACATTTTGCTAGCTA+AGG | + | chr5.4:12841663-12841682 | MS.gene59410:intron | 35.0% |
| !! | ATCTAGTCTTATTGCTGCTA+TGG | + | chr5.4:12840252-12840271 | MS.gene59410:CDS | 35.0% |
| !! | ATTTAGATCGGTTTTTGAGG+AGG | + | chr5.4:12840155-12840174 | MS.gene59410:CDS | 35.0% |
| !!! | AAGACTAGTCTTTTACTGGT+TGG | - | chr5.4:12841439-12841458 | None:intergenic | 35.0% |
| !!! | CAAATTGATCAGTTTTGGGA+TGG | + | chr5.4:12839650-12839669 | MS.gene59410:CDS | 35.0% |
| AATATGCATGTCCATACGAC+CGG | - | chr5.4:12841946-12841965 | None:intergenic | 40.0% | |
| ACCAGACAAGTTTCCAGATA+TGG | + | chr5.4:12840426-12840445 | MS.gene59410:CDS | 40.0% | |
| AGCCAAGATTCTGAATGCTT+TGG | - | chr5.4:12841988-12842007 | None:intergenic | 40.0% | |
| ATTCTATGCAATCTGGACCA+TGG | + | chr5.4:12840053-12840072 | MS.gene59410:CDS | 40.0% | |
| CACTGTTTGAAGGAATCCAT+TGG | + | chr5.4:12841328-12841347 | MS.gene59410:intron | 40.0% | |
| CATAGCTAACCACTGTTTGA+AGG | + | chr5.4:12841318-12841337 | MS.gene59410:intron | 40.0% | |
| CTTTGGCTGCATAGTAAAGA+TGG | - | chr5.4:12839685-12839704 | None:intergenic | 40.0% | |
| GCAAGTGAATCAAATGAAGC+AGG | - | chr5.4:12840100-12840119 | None:intergenic | 40.0% | |
| GGACATACATACATCCATCA+AGG | - | chr5.4:12841294-12841313 | None:intergenic | 40.0% | |
| GGTCTGCTTAACTATATGGA+TGG | + | chr5.4:12841837-12841856 | MS.gene59410:CDS | 40.0% | |
| GTCTGGTCTGCTTAACTATA+TGG | + | chr5.4:12841833-12841852 | MS.gene59410:CDS | 40.0% | |
| TCCATATCTGGAAACTTGTC+TGG | - | chr5.4:12840430-12840449 | None:intergenic | 40.0% | |
| TCTGTTAGAAGTCTCTCTCA+TGG | - | chr5.4:12840350-12840369 | None:intergenic | 40.0% | |
| TGATGGAAAACAAGTAGTGG+AGG | + | chr5.4:12839790-12839809 | MS.gene59410:CDS | 40.0% | |
| TGTTCAGGTCTAATGGTATG+AGG | - | chr5.4:12841383-12841402 | None:intergenic | 40.0% | |
| ! | AACAGTGGTTAGCTATGACA+TGG | - | chr5.4:12841315-12841334 | None:intergenic | 40.0% |
| ! | AGACTAGATTTTCCAGTTCC+TGG | - | chr5.4:12840241-12840260 | None:intergenic | 40.0% |
| ! | CAATGGATTCCTTCAAACAG+TGG | - | chr5.4:12841330-12841349 | None:intergenic | 40.0% |
| !! | ACATTGGTTCAGCATCATCA+TGG | + | chr5.4:12839480-12839499 | MS.gene59410:CDS | 40.0% |
| AAGAGAAACGACCAGCCATT+GGG | - | chr5.4:12839448-12839467 | None:intergenic | 45.0% | |
| AATGGTATGAGGCAGCAAGT+GGG | - | chr5.4:12841372-12841391 | None:intergenic | 45.0% | |
| ATATGCATGTCCATACGACC+GGG | - | chr5.4:12841945-12841964 | None:intergenic | 45.0% | |
| CTGGGTCTACTTTGTCCTTA+TGG | - | chr5.4:12841911-12841930 | None:intergenic | 45.0% | |
| GAAGATCCTGATGTTGCTCT+TGG | + | chr5.4:12842122-12842141 | MS.gene59410:CDS | 45.0% | |
| TAATGGTATGAGGCAGCAAG+TGG | - | chr5.4:12841373-12841392 | None:intergenic | 45.0% | |
| TTATATGGTCCACCAGGAAC+TGG | + | chr5.4:12840226-12840245 | MS.gene59410:CDS | 45.0% | |
| ! | CTAGATTTTCCAGTTCCTGG+TGG | - | chr5.4:12840238-12840257 | None:intergenic | 45.0% |
| ! | GATGGTTTGTGGTCAAGTTG+TGG | + | chr5.4:12841855-12841874 | MS.gene59410:CDS | 45.0% |
| ! | GGCCAAAGCATTCAGAATCT+TGG | + | chr5.4:12841983-12842002 | MS.gene59410:CDS | 45.0% |
| ! | TTTGTGGTCAAGTTGTGGAG+AGG | + | chr5.4:12841860-12841879 | MS.gene59410:CDS | 45.0% |
| !! | AATTGCTGGTTCTAGCAGAG+AGG | - | chr5.4:12841490-12841509 | None:intergenic | 45.0% |
| AGAGAAACGACCAGCCATTG+GGG | - | chr5.4:12839447-12839466 | None:intergenic | 50.0% | |
| AGATACTCTGCCACTACAGC+AGG | - | chr5.4:12842092-12842111 | None:intergenic | 50.0% | |
| AGTGCTCCAAGAGCAACATC+AGG | - | chr5.4:12842131-12842150 | None:intergenic | 50.0% | |
| ATACTCTGCCACTACAGCAG+GGG | - | chr5.4:12842090-12842109 | None:intergenic | 50.0% | |
| GAAGAGAAACGACCAGCCAT+TGG | - | chr5.4:12839449-12839468 | None:intergenic | 50.0% | |
| GATACTCTGCCACTACAGCA+GGG | - | chr5.4:12842091-12842110 | None:intergenic | 50.0% | |
| TATGCATGTCCATACGACCG+GGG | - | chr5.4:12841944-12841963 | None:intergenic | 50.0% | |
| ! | GTTGGTAAGCCTTGGAAACG+TGG | + | chr5.4:12840196-12840215 | MS.gene59410:CDS | 50.0% |
| AGATGTCACCCCTGCTGTAG+TGG | + | chr5.4:12842079-12842098 | MS.gene59410:CDS | 55.0% | |
| CCATTGGAATGCGTGCGAAG+AGG | + | chr5.4:12841344-12841363 | MS.gene59410:intron | 55.0% | |
| CCTCTTCGCACGCATTCCAA+TGG | - | chr5.4:12841347-12841366 | None:intergenic | 55.0% | |
| GAGAAACGACCAGCCATTGG+GGG | - | chr5.4:12839446-12839465 | None:intergenic | 55.0% | |
| ATTGTTGCGCCCCGGTCGTA+TGG | + | chr5.4:12841932-12841951 | MS.gene59410:CDS | 60.0% | |
| GACCCAGCATTGTTGCGCCC+CGG | + | chr5.4:12841924-12841943 | MS.gene59410:CDS | 65.0% | |
| GACCGGGGCGCAACAATGCT+GGG | - | chr5.4:12841929-12841948 | None:intergenic | 65.0% | |
| CGACCGGGGCGCAACAATGC+TGG | - | chr5.4:12841930-12841949 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12839437 | 12842223 | 12839437 | ID=MS.gene59410 |
| chr5.4 | mRNA | 12839437 | 12842223 | 12839437 | ID=MS.gene59410.t1;Parent=MS.gene59410 |
| chr5.4 | exon | 12839437 | 12840468 | 12839437 | ID=MS.gene59410.t1.exon1;Parent=MS.gene59410.t1 |
| chr5.4 | CDS | 12839437 | 12840468 | 12839437 | ID=cds.MS.gene59410.t1;Parent=MS.gene59410.t1 |
| chr5.4 | exon | 12841798 | 12842223 | 12841798 | ID=MS.gene59410.t1.exon2;Parent=MS.gene59410.t1 |
| chr5.4 | CDS | 12841798 | 12842223 | 12841798 | ID=cds.MS.gene59410.t1;Parent=MS.gene59410.t1 |
| Gene Sequence |
| Protein sequence |
