AlfalfaGEDB | MS.gene59882

M. sativa cultivar XinJiangDaYe / MS.gene59882

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59882.t1	XP_003628252.2	98	352	7	0	1	352	1	352	4.30E-196	693.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59882.t1	P33543	34.5	354	218	5	4	349	304	651	2.2e-55	217.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59882.t1	G7L8K4	98.0	352	7	0	1	352	1	352	3.1e-196	693.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051860	MS.gene59882	0.800176	1.63E-48	-1.69E-46
MS.gene052253	MS.gene59882	0.806629	7.50E-50	-1.69E-46
MS.gene054183	MS.gene59882	0.800253	1.57E-48	-1.69E-46
MS.gene054473	MS.gene59882	0.819622	1.05E-52	-1.69E-46
MS.gene057469	MS.gene59882	0.817447	3.28E-52	-1.69E-46
MS.gene05886	MS.gene59882	0.818363	2.04E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene005474	MS.gene59882	PPI
MS.gene006134	MS.gene59882	PPI
MS.gene07355	MS.gene59882	PPI
MS.gene20783	MS.gene59882	PPI
MS.gene59882	MS.gene20897	PPI
MS.gene59882	MS.gene07262	PPI
MS.gene59882	MS.gene067410	PPI
MS.gene59882	MS.gene20834	PPI
MS.gene59882	MS.gene83538	PPI
MS.gene60707	MS.gene59882	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59882.t1	MTR_8g046290	98.011	352	7	0	1	352	1	352	0.0	702
MS.gene59882.t1	MTR_7g059225	37.748	302	177	6	51	349	365	658	5.89e-58	199
MS.gene59882.t1	MTR_4g014070	40.836	311	160	9	46	350	482	774	2.33e-55	193
MS.gene59882.t1	MTR_5g083480	37.742	310	179	7	42	350	473	769	1.89e-53	188
MS.gene59882.t1	MTR_5g083480	37.621	311	178	7	42	350	470	766	2.47e-53	188
MS.gene59882.t1	MTR_3g062500	31.099	373	216	10	3	350	280	636	2.94e-51	181
MS.gene59882.t1	MTR_3g062500	31.099	373	216	10	3	350	270	626	3.64e-51	180
MS.gene59882.t1	MTR_5g075630	31.081	370	217	10	3	350	274	627	8.98e-50	176
MS.gene59882.t1	MTR_3g093710	30.027	373	217	12	1	350	263	614	3.44e-47	169
MS.gene59882.t1	MTR_3g090665	30.822	292	183	8	64	352	54	329	1.72e-45	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59882.t1	AT5G07620	66.972	327	98	4	29	350	35	356	1.37e-158	449
MS.gene59882.t1	AT5G61570	61.846	325	101	6	36	350	45	356	7.15e-138	396
MS.gene59882.t1	AT5G61570	61.280	328	101	7	36	350	45	359	4.26e-136	392
MS.gene59882.t1	AT3G24660	36.545	301	183	4	51	349	357	651	1.35e-60	206
MS.gene59882.t1	AT3G51740	37.195	328	186	8	27	350	497	808	1.34e-55	194
MS.gene59882.t1	AT5G58300	30.904	343	204	11	24	350	304	629	4.01e-45	164
MS.gene59882.t1	AT5G58300	30.904	343	204	11	24	350	304	629	4.01e-45	164
MS.gene59882.t1	AT5G58300	30.904	343	204	11	24	350	304	629	4.01e-45	164
MS.gene59882.t1	AT3G08680	30.245	367	223	10	3	350	262	614	2.15e-44	162
MS.gene59882.t1	AT3G08680	30.245	367	223	10	3	350	262	614	2.15e-44	162

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Find 60 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAGAAGAGGTGAAGG+AGG	0.481361	8.3:-53377511	MS.gene59882:CDS
AAATTATGGAACACTTTATA+AGG	0.258863	8.3:-53377409	MS.gene59882:CDS
AACATATGCACAATATCAAT+TGG	0.447505	8.3:-53375868	MS.gene59882:CDS
AAGATTAAAGCATCCTAATT+TGG	0.223358	8.3:-53377286	MS.gene59882:CDS
AATCTTACTCAATTCATAAG+AGG	0.487114	8.3:-53377192	MS.gene59882:intron
ACAAGAAGCTTCTCACCCCT+AGG	0.643113	8.3:+53377237	None:intergenic
ACAGCATTTCTCATGAAATT+CGG	0.390877	8.3:+53375520	None:intergenic
ACCTGAACTGATCAAAATGA+AGG	0.547968	8.3:-53375653	MS.gene59882:CDS
AGAAAAGCAAGAAGAGGTGA+AGG	0.501288	8.3:-53377514	MS.gene59882:CDS
AGACCTGTTTGTACTACAAG+AGG	0.547319	8.3:-53377342	MS.gene59882:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATAAAAGACACTGTGTT+AGG	+	chr8.3:53376589-53376608	None:intergenic	30.0%
ACAGCATTTCTCATGAAATT+CGG	+	chr8.3:53377446-53377465	None:intergenic	30.0%
AGATTCCCATGTCTATAAAA+TGG	+	chr8.3:53375756-53375775	None:intergenic	30.0%
ATCTTTGTTAGGTGTTTACT+AGG	-	chr8.3:53375962-53375981	MS.gene59882:intron	30.0%
ATGAACTTTCAAGCATTTCT+TGG	+	chr8.3:53377271-53377290	None:intergenic	30.0%
GAAACCGATATATATAGTCT+CGG	-	chr8.3:53377344-53377363	MS.gene59882:CDS	30.0%
GTAATAAAGTGAGATTGTTG+AGG	-	chr8.3:53375592-53375611	MS.gene59882:CDS	30.0%
TACAATTTCAAGGACCAATT+TGG	-	chr8.3:53376973-53376992	MS.gene59882:intron	30.0%
TACACCGAGACTATATATAT+CGG	+	chr8.3:53377351-53377370	None:intergenic	30.0%
TACTAAAGACATAGAAAGCT+TGG	-	chr8.3:53375425-53375444	MS.gene59882:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	53375327	53377658	53375327	ID=MS.gene59882
chr8.3	mRNA	53375327	53377658	53375327	ID=MS.gene59882.t1;Parent=MS.gene59882
chr8.3	exon	53377193	53377658	53377193	ID=MS.gene59882.t1.exon1;Parent=MS.gene59882.t1
chr8.3	CDS	53377193	53377658	53377193	ID=cds.MS.gene59882.t1;Parent=MS.gene59882.t1
chr8.3	exon	53375327	53375919	53375327	ID=MS.gene59882.t1.exon2;Parent=MS.gene59882.t1
chr8.3	CDS	53375327	53375919	53375327	ID=cds.MS.gene59882.t1;Parent=MS.gene59882.t1

Gene Sequence

>MS.gene59882

ATGCTGATATTAGTTCTAGGACTAATTTCAGCTACTCTGCTAGTGATTATTGTTGCATTTTATGGCTTTTGTTACATGAAAAGATCATCAAAACATGATACTAAAGACATAGAAAGCTTGGAAGAAAAGCAAGAAGAGGTGAAGGAGGATTTGATCATCTTTGAAGGTGGAGAGGATTTGACAATATGTGATATATTGGATGCACCAGGTGAAGTGATTGGAAAATCAAATTATGGAACACTTTATAAGGCTTTGTTGCAAAGGAGTAATAAAGTGAGATTGTTGAGGTTTTTGAGACCTGTTTGTACTACAAGAGGTGAAGAATTGGATGAAATGATTCTGTTTCTTGGAAGATTAAAGCATCCTAATTTGGTTCCTCTTTTGGGATTTTATACTGGACCTAGGGGTGAGAAGCTTCTTGTTCATCCATTTTATAGACATGGGAATCTTACTCAATTCATAAGAGGTAATTATTCTCTTGCTTATTGTTCTTTTCTTAATCCAATTTGGTTTACTTGAAATTTTGAGTTTTCTTTCTTCATTTGGTGTTGTGTATTGTTTTGTTTAAGATAGTGATTTAGATTTAGAAGGCATGTTAATGTTTGATCTTTGATAAATTTGATAATCATTCACTAATCTTTGTTAGGTGTTTACTAGGAGATGGAAAATGTTGAATTTTGGGGATTTGAAATCTTAAGAAGAAACATTTATGAAGAGTCATTAGCTTGTGTTAAATGTTTTTTTTTGGTTACAAGCTTGTGTTAAATGTTGATCTATATTGATATTTAGGCACCTAAAAATTATATCATTTTTACATAGCAGAGAGAATGTGTGTTGGTGTATATATGGATCATTATTTTTTACTATTATTTTAGAAATTAATGTTAAAATGGTCAGAGTTTTTCTATGTACAAATATAGTTTTTGGCTTTCCAATGTTTTAATAGTTATTTGAATTGATTGTTCAAAAAAATAGTTATTTGAATTGAACTTTTTCTTTTCTAGTGGTTGAAAGCTGAATACATATACTACTCTTTCTTCCTTCCTTTCTTCTTTTTCTTTTTCCATTTTCAAGGCTAACATTATTACTAATCAATGTTTTGGTTTATGGCAACACTTTTCATTCATCTGTTACTATGTCTTAAATTGGACTAGTAAATATTAAAGTCTCCATTAAATTTGGCAAGTGAACAAATAGCTAGGAATTAAATCTGCAACCTATCTATTTGAAACACAATCAATACTCATATACACTTTCTACCTAACACAGTGTCTTTTATGTTGAATTTCGAGTAATACCTAAGTTTGTACTTGAAATTGTAGTGTTGTATCAATTTAGCCCTCCACATTATTAATATTCCAAAAATAAACATTGAAATTGTATAATGTTAATCAATTTCTTCCCTTGATCTGATATCAAAATGCATCCCTGGTTATTTTCTTTTAAAACTCGGTATCTGGTCATAGGACCAACTAATCCGAGGGATCCAATCCCACTGTCCACTTAAAATCATTTATGTAGTTTCAAATTTATCCCTAATAATATCAACTTAATTTCGTTCTAGTCCTTGCAAATACTAATAGAGGGACAAATTAGATTAGATTCTTACAATTTGGAATATCAATAATGTGAGGATTGAAAAGTATTACAATTTCAAGGACCAATTTGGATATTTTACTCTTTGAATCTGATTTTATCTTACAATTATTGATCAAATATGTATGTTTACTACTTATCAGATGGAAATGGAGAGAGTTACAAATGGTCAAACATATGCACAATATCAATTGGTATAGCAAAAGGATTAGAACATCTTCACACATCACATGAAAAGCCAATTATCCATGGAAACCTAAAGTCGAAAAACATCCTTTTGGATAGCTCCTATCATCCACACATCTCAGATTCAGGACTCCATCTTCTCTTGAATCCAACTGCTGGCCAAGAAATGCTTGAAAGTTCATCTGCTCAAGGCTATAAACCACCTGAACTGATCAAAATGAAGGATGCCAGCGAAGAAACCGATATATATAGTCTCGGTGTAATCTTGCTTGAATTGCTTTCAGGAAAGGAACCTATCAATGAACATCCAACTCCGGATGAAGATTTCTATTTGCCGAATTTCATGAGAAATGCTGTTCTTGGACATAGAATTTCTGATTTACATCATCCTGCTATTCTTCTCAGAAACGGCATAGACGATGAAATTCAAGTTACGGAAGAATGTGTTCTCAAATTTTTTCAACTTGCTATGGCTTGTTGTTCACCTTCACCTTCAATTAGACCTAACATAAAGCAAGTTATTAGGAAGCTTGAAGAAATTATACATTAG

Protein sequence

>MS.gene59882.t1

MLILVLGLISATLLVIIVAFYGFCYMKRSSKHDTKDIESLEEKQEEVKEDLIIFEGGEDLTICDILDAPGEVIGKSNYGTLYKALLQRSNKVRLLRFLRPVCTTRGEELDEMILFLGRLKHPNLVPLLGFYTGPRGEKLLVHPFYRHGNLTQFIRDGNGESYKWSNICTISIGIAKGLEHLHTSHEKPIIHGNLKSKNILLDSSYHPHISDSGLHLLLNPTAGQEMLESSSAQGYKPPELIKMKDASEETDIYSLGVILLELLSGKEPINEHPTPDEDFYLPNFMRNAVLGHRISDLHHPAILLRNGIDDEIQVTEECVLKFFQLAMACCSPSPSIRPNIKQVIRKLEEIIH