Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60161.t1 | XP_003610330.1 | 91.4 | 442 | 2 | 1 | 1 | 406 | 1 | 442 | 1.80E-238 | 834.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60161.t1 | Q9ZUH1 | 72.4 | 442 | 85 | 2 | 1 | 406 | 1 | 441 | 5.8e-193 | 674.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60161.t1 | G7JGR0 | 91.4 | 442 | 2 | 1 | 1 | 406 | 1 | 442 | 1.3e-238 | 834.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051959 | MS.gene60161 | 0.829931 | 3.90E-55 | -1.69E-46 |
| MS.gene051960 | MS.gene60161 | 0.830663 | 2.59E-55 | -1.69E-46 |
| MS.gene053602 | MS.gene60161 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene053932 | MS.gene60161 | 0.81522 | 1.03E-51 | -1.69E-46 |
| MS.gene055150 | MS.gene60161 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene057001 | MS.gene60161 | 0.802819 | 4.68E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene60161 | 0.85454 | 1.15E-61 | -1.69E-46 |
| MS.gene06012 | MS.gene60161 | 0.812931 | 3.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60161.t1 | MTR_4g130970 | 91.403 | 442 | 2 | 1 | 1 | 406 | 1 | 442 | 0.0 | 820 |
| MS.gene60161.t1 | MTR_7g088170 | 32.597 | 181 | 116 | 3 | 4 | 182 | 15 | 191 | 5.78e-21 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60161.t1 | AT2G24240 | 72.398 | 442 | 85 | 2 | 1 | 406 | 1 | 441 | 0.0 | 660 |
| MS.gene60161.t1 | AT4G30940 | 72.009 | 443 | 85 | 4 | 1 | 406 | 1 | 441 | 0.0 | 626 |
| MS.gene60161.t1 | AT5G41330 | 26.042 | 288 | 168 | 10 | 8 | 275 | 13 | 275 | 9.33e-16 | 79.3 |
| MS.gene60161.t1 | AT5G41330 | 26.042 | 288 | 168 | 10 | 8 | 275 | 13 | 275 | 9.33e-16 | 79.3 |
| MS.gene60161.t1 | AT3G09030 | 37.255 | 153 | 76 | 7 | 7 | 149 | 9 | 151 | 1.86e-14 | 75.1 |
Find 86 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCATGCAATGCCAATTT+AGG | 0.083070 | 8.4:+2677051 | None:intergenic |
| GGAACCTTGTTACCCTAAAT+TGG | 0.245085 | 8.4:-2677064 | MS.gene60161:CDS |
| ACACCTATAACAATATTGTT+AGG | 0.275446 | 8.4:+2677657 | None:intergenic |
| AACTAACTAAATCATATAAT+TGG | 0.286574 | 8.4:+2676847 | None:intergenic |
| GACCCTAACAATATTGTTAT+AGG | 0.314276 | 8.4:-2677660 | MS.gene60161:CDS |
| GTTTGAGGAATTGGGTTTCA+TGG | 0.325807 | 8.4:-2677160 | MS.gene60161:CDS |
| CACTGAAATGCAATCATTCA+TGG | 0.338015 | 8.4:+2677014 | None:intergenic |
| GGTGAATGAGTTTGAGGAAT+TGG | 0.341336 | 8.4:-2677169 | MS.gene60161:CDS |
| ATGAATATGGTGTTGGTGTT+TGG | 0.349958 | 8.4:-2677461 | MS.gene60161:CDS |
| TGGAATCTGTTACAAGATAA+TGG | 0.353958 | 8.4:-2678044 | MS.gene60161:CDS |
| TGAATATGGTGTTGGTGTTT+GGG | 0.354115 | 8.4:-2677460 | MS.gene60161:CDS |
| CTAGACGTTAAAACCCATTC+AGG | 0.365974 | 8.4:+2676982 | None:intergenic |
| GGTGTTTGGGATCAAGTTAC+TGG | 0.372623 | 8.4:-2677447 | MS.gene60161:CDS |
| GGTTTGTTTAGTTCTCATAA+TGG | 0.395752 | 8.4:-2677600 | MS.gene60161:CDS |
| GATAAGCTTCAATGGTTAGA+AGG | 0.398339 | 8.4:-2677372 | MS.gene60161:intron |
| GCATGGTTCATGTTTATGAT+TGG | 0.399840 | 8.4:-2677746 | MS.gene60161:CDS |
| CACCATGCAATGCCAATTTA+GGG | 0.402048 | 8.4:+2677052 | None:intergenic |
| GTGCAATGTTAGATGAGAAT+TGG | 0.402672 | 8.4:-2678064 | MS.gene60161:CDS |
| GGGGTCAATTTGATGGTAAT+AGG | 0.406966 | 8.4:-2677863 | MS.gene60161:CDS |
| AGATTGTCATGTTCTGTTCA+AGG | 0.408758 | 8.4:-2677837 | MS.gene60161:CDS |
| GCAAAGTGGGGTCAATTTGA+TGG | 0.408967 | 8.4:-2677870 | MS.gene60161:CDS |
| CTTTGATAATCAAGATTAAG+AGG | 0.412692 | 8.4:+2677705 | None:intergenic |
| AAAGGAAGGAGTAATGAATA+TGG | 0.413587 | 8.4:-2677474 | MS.gene60161:CDS |
| GTGAATGAGTTTGAGGAATT+GGG | 0.415612 | 8.4:-2677168 | MS.gene60161:CDS |
| GCTAGAAAATAATTTATAAT+CGG | 0.422787 | 8.4:+2677500 | None:intergenic |
| TGGTCGTGGTGATGGTGGAA+TGG | 0.427839 | 8.4:-2677622 | MS.gene60161:CDS |
| ATCTTAGATCTGCTACGAAC+AGG | 0.436194 | 8.4:-2677978 | MS.gene60161:CDS |
| GTTCTCATAATGGTGAACTT+AGG | 0.437286 | 8.4:-2677590 | MS.gene60161:CDS |
| AAACTCATTCACCACACAAA+TGG | 0.445408 | 8.4:+2677179 | None:intergenic |
| GAGCCTTTAGGTTGGTCACT+TGG | 0.452125 | 8.4:-2677402 | MS.gene60161:CDS |
| CTAGAAGTAGGTTGATGAAA+GGG | 0.461569 | 8.4:-2677098 | MS.gene60161:CDS |
| GGTCGTGGTGATGGTGGAAT+GGG | 0.462939 | 8.4:-2677621 | MS.gene60161:CDS |
| GTCTGATGTAGGTGCTACTT+TGG | 0.469841 | 8.4:-2677253 | MS.gene60161:intron |
| CTTTGGCTGTGGATGAGAAA+AGG | 0.471495 | 8.4:-2677236 | MS.gene60161:CDS |
| GCAACACAACAACCACCATC+TGG | 0.471839 | 8.4:+2677777 | None:intergenic |
| CACCTATAACAATATTGTTA+GGG | 0.476026 | 8.4:+2677658 | None:intergenic |
| TGAGGTGGAGTTCTAGAAGT+AGG | 0.478537 | 8.4:-2677110 | MS.gene60161:CDS |
| TTGTGTTGCTCATGGTTGCA+TGG | 0.482790 | 8.4:-2677763 | MS.gene60161:CDS |
| AAGAGTCAACGATGTTGGTT+GGG | 0.490562 | 8.4:-2677685 | MS.gene60161:CDS |
| AAAGAGTCAACGATGTTGGT+TGG | 0.491520 | 8.4:-2677686 | MS.gene60161:CDS |
| CGAATTGCTGTTCCATCACC+AGG | 0.493877 | 8.4:+2677807 | None:intergenic |
| TGCAGGAAGGAATTCTATGT+TGG | 0.496931 | 8.4:-2678087 | MS.gene60161:CDS |
| GGTGGTTGTTGTGTTGCTCA+TGG | 0.497436 | 8.4:-2677771 | MS.gene60161:CDS |
| TTAGGGTAACAAGGTTCCTC+AGG | 0.497761 | 8.4:+2677069 | None:intergenic |
| CATGTTAAAAGTTATACTGC+TGG | 0.501363 | 8.4:-2677540 | MS.gene60161:CDS |
| TTGTGTGGTGAATGAGTTTG+AGG | 0.502881 | 8.4:-2677175 | MS.gene60161:CDS |
| GTGATGCTGATAAGCTTCAA+TGG | 0.519136 | 8.4:-2677380 | MS.gene60161:CDS |
| TCTAGAAGTAGGTTGATGAA+AGG | 0.521514 | 8.4:-2677099 | MS.gene60161:CDS |
| AATCATATAATTGGTGGTGT+AGG | 0.522981 | 8.4:+2676856 | None:intergenic |
| TCACGTTCGTTCTGCAAAGT+GGG | 0.532575 | 8.4:-2677883 | MS.gene60161:CDS |
| GCAGGAAGGAATTCTATGTT+GGG | 0.533773 | 8.4:-2678086 | MS.gene60161:CDS |
| TGTAGGTGCTACTTTGGCTG+TGG | 0.541754 | 8.4:-2677247 | MS.gene60161:intron |
| TTTGGCTGTGGATGAGAAAA+GGG | 0.543803 | 8.4:-2677235 | MS.gene60161:CDS |
| GCAACAACACTTGCAAATGC+AGG | 0.544141 | 8.4:-2678104 | MS.gene60161:CDS |
| TAACTAAATCATATAATTGG+TGG | 0.551145 | 8.4:+2676850 | None:intergenic |
| TATCAAAGAGTCAACGATGT+TGG | 0.555358 | 8.4:-2677690 | MS.gene60161:CDS |
| GCAATTCGAGCTGGTCCAGA+TGG | 0.555633 | 8.4:-2677792 | MS.gene60161:CDS |
| CAAGGACAAGCACCTGGTGA+TGG | 0.562689 | 8.4:-2677819 | MS.gene60161:CDS |
| GAAAGACTTGGTCGTGGTGA+TGG | 0.564375 | 8.4:-2677630 | MS.gene60161:CDS |
| TACCCTAAATTGGCATTGCA+TGG | 0.565683 | 8.4:-2677054 | MS.gene60161:CDS |
| ATCACGTTCGTTCTGCAAAG+TGG | 0.567719 | 8.4:-2677884 | MS.gene60161:CDS |
| AGGTTAAGACGAAGCTATGG+TGG | 0.568152 | 8.4:-2676961 | MS.gene60161:CDS |
| TCACCAAGTGACCAACCTAA+AGG | 0.580966 | 8.4:+2677399 | None:intergenic |
| AGGAGTAATGAATATGGTGT+TGG | 0.583666 | 8.4:-2677468 | MS.gene60161:CDS |
| AGACTTGGTCGTGGTGATGG+TGG | 0.593685 | 8.4:-2677627 | MS.gene60161:CDS |
| TAGACGTTAAAACCCATTCA+GGG | 0.595992 | 8.4:+2676983 | None:intergenic |
| GGTGAGAGATGCAATAGCAA+TGG | 0.603673 | 8.4:-2677214 | MS.gene60161:CDS |
| GAGAGATGCAATAGCAATGG+AGG | 0.611212 | 8.4:-2677211 | MS.gene60161:CDS |
| AGAGTGAAATTCAACGTAGG+AGG | 0.612116 | 8.4:-2678146 | MS.gene60161:CDS |
| GATGGAACAGCAATTCGAGC+TGG | 0.614847 | 8.4:-2677801 | MS.gene60161:CDS |
| TCTAGGTTAAGACGAAGCTA+TGG | 0.618762 | 8.4:-2676964 | MS.gene60161:CDS |
| TCTGTTCAAGGACAAGCACC+TGG | 0.622300 | 8.4:-2677825 | MS.gene60161:CDS |
| ATTCGAGCTGGTCCAGATGG+TGG | 0.627982 | 8.4:-2677789 | MS.gene60161:CDS |
| CCTAAATTGGCATTGCATGG+TGG | 0.628825 | 8.4:-2677051 | MS.gene60161:CDS |
| AATGCCAATTTAGGGTAACA+AGG | 0.637680 | 8.4:+2677060 | None:intergenic |
| GGATAATAATTCCATTTGTG+TGG | 0.643500 | 8.4:-2677190 | MS.gene60161:CDS |
| AAAATTCATCGATCGTAACG+CGG | 0.649955 | 8.4:-2678015 | MS.gene60161:CDS |
| CAACACTTGCAAATGCAGGA+AGG | 0.654570 | 8.4:-2678100 | MS.gene60161:CDS |
| CACGTTCGTTCTGCAAAGTG+GGG | 0.658731 | 8.4:-2677882 | MS.gene60161:CDS |
| GGTTAAGACGAAGCTATGGT+GGG | 0.659765 | 8.4:-2676960 | MS.gene60161:CDS |
| CTGCTGCTAACAGTGTGAGG+TGG | 0.673356 | 8.4:-2677125 | MS.gene60161:CDS |
| ATAGGTGTAAGTGAAAGACT+TGG | 0.679047 | 8.4:-2677642 | MS.gene60161:CDS |
| GATAGAGTGAAATTCAACGT+AGG | 0.690106 | 8.4:-2678149 | MS.gene60161:CDS |
| GTAAGTGAAAGACTTGGTCG+TGG | 0.701643 | 8.4:-2677636 | MS.gene60161:CDS |
| GATGAAAGGGAAGATGCCTG+AGG | 0.717933 | 8.4:-2677085 | MS.gene60161:CDS |
| GTTCTGCTGCTAACAGTGTG+AGG | 0.729608 | 8.4:-2677128 | MS.gene60161:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCTAGAAAATAATTTATAAT+CGG | + | chr8.4:2677525-2677544 | None:intergenic | 15.0% |
| !!! | ATATAACAATTATCTTTTCT+TGG | + | chr8.4:2677707-2677726 | None:intergenic | 15.0% |
| !!! | TAATTGTTATATTAGTCTTT+TGG | - | chr8.4:2677715-2677734 | MS.gene60161:CDS | 15.0% |
| !!! | AAATTATTTTCTAGCTGTAA+AGG | - | chr8.4:2677530-2677549 | MS.gene60161:CDS | 20.0% |
| !!! | AAGAGAATGTTTTTGATATA+TGG | - | chr8.4:2678137-2678156 | MS.gene60161:CDS | 20.0% |
| !!! | AGAGAATGTTTTTGATATAT+GGG | - | chr8.4:2678138-2678157 | MS.gene60161:CDS | 20.0% |
| ! | ACACCTATAACAATATTGTT+AGG | + | chr8.4:2677368-2677387 | None:intergenic | 25.0% |
| ! | CACCTATAACAATATTGTTA+GGG | + | chr8.4:2677367-2677386 | None:intergenic | 25.0% |
| !! | CTTTGATAATCAAGATTAAG+AGG | + | chr8.4:2677320-2677339 | None:intergenic | 25.0% |
| !! | TCAATATGTGATTTTTCCAT+TGG | - | chr8.4:2678085-2678104 | MS.gene60161:CDS | 25.0% |
| !!! | GATTTTTTTTATGAGCCTTT+AGG | - | chr8.4:2677608-2677627 | MS.gene60161:CDS | 25.0% |
| AAAGGAAGGAGTAATGAATA+TGG | - | chr8.4:2677548-2677567 | MS.gene60161:CDS | 30.0% | |
| CATGTTAAAAGTTATACTGC+TGG | - | chr8.4:2677482-2677501 | MS.gene60161:CDS | 30.0% | |
| GACCCTAACAATATTGTTAT+AGG | - | chr8.4:2677362-2677381 | MS.gene60161:intron | 30.0% | |
| GGATAATAATTCCATTTGTG+TGG | - | chr8.4:2677832-2677851 | MS.gene60161:CDS | 30.0% | |
| TGGAATCTGTTACAAGATAA+TGG | - | chr8.4:2676978-2676997 | MS.gene60161:CDS | 30.0% | |
| TTAGAGAGAAGAAAATGGTT+TGG | - | chr8.4:2677741-2677760 | MS.gene60161:CDS | 30.0% | |
| ! | ATATGTGATTTTTCCATTGG+AGG | - | chr8.4:2678088-2678107 | MS.gene60161:CDS | 30.0% |
| ! | TATGTGATTTTTCCATTGGA+GGG | - | chr8.4:2678089-2678108 | MS.gene60161:CDS | 30.0% |
| !! | GGATTTTAGAGAGAAGAAAA+TGG | - | chr8.4:2677736-2677755 | MS.gene60161:CDS | 30.0% |
| !! | GGTTTGTTTAGTTCTCATAA+TGG | - | chr8.4:2677422-2677441 | MS.gene60161:CDS | 30.0% |
| !!! | TATTTTCTAGCTGTAAAGGA+AGG | - | chr8.4:2677534-2677553 | MS.gene60161:CDS | 30.0% |
| !!! | TTTTTTATGAGCCTTTAGGT+TGG | - | chr8.4:2677612-2677631 | MS.gene60161:CDS | 30.0% |
| AAAATTCATCGATCGTAACG+CGG | - | chr8.4:2677007-2677026 | MS.gene60161:CDS | 35.0% | |
| AAACTCATTCACCACACAAA+TGG | + | chr8.4:2677846-2677865 | None:intergenic | 35.0% | |
| AGATTGTCATGTTCTGTTCA+AGG | - | chr8.4:2677185-2677204 | MS.gene60161:CDS | 35.0% | |
| AGGAGTAATGAATATGGTGT+TGG | - | chr8.4:2677554-2677573 | MS.gene60161:CDS | 35.0% | |
| ATAGGTGTAAGTGAAAGACT+TGG | - | chr8.4:2677380-2677399 | MS.gene60161:CDS | 35.0% | |
| CACTGAAATGCAATCATTCA+TGG | + | chr8.4:2678011-2678030 | None:intergenic | 35.0% | |
| GATAAGCTTCAATGGTTAGA+AGG | - | chr8.4:2677650-2677669 | MS.gene60161:CDS | 35.0% | |
| GATAGAGTGAAATTCAACGT+AGG | - | chr8.4:2676873-2676892 | MS.gene60161:CDS | 35.0% | |
| GCATGGTTCATGTTTATGAT+TGG | - | chr8.4:2677276-2677295 | MS.gene60161:intron | 35.0% | |
| GTGAATGAGTTTGAGGAATT+GGG | - | chr8.4:2677854-2677873 | MS.gene60161:CDS | 35.0% | |
| GTGCAATGTTAGATGAGAAT+TGG | - | chr8.4:2676958-2676977 | MS.gene60161:CDS | 35.0% | |
| GTTCTCATAATGGTGAACTT+AGG | - | chr8.4:2677432-2677451 | MS.gene60161:CDS | 35.0% | |
| TAGACGTTAAAACCCATTCA+GGG | + | chr8.4:2678042-2678061 | None:intergenic | 35.0% | |
| TATCAAAGAGTCAACGATGT+TGG | - | chr8.4:2677332-2677351 | MS.gene60161:intron | 35.0% | |
| ! | AATGCCAATTTAGGGTAACA+AGG | + | chr8.4:2677965-2677984 | None:intergenic | 35.0% |
| ! | ATGTGATTTTTCCATTGGAG+GGG | - | chr8.4:2678090-2678109 | MS.gene60161:CDS | 35.0% |
| ! | GATTGCATTTCAGTGTTTTG+TGG | - | chr8.4:2678016-2678035 | MS.gene60161:CDS | 35.0% |
| ! | TACAGAGAAGCTCTGTTTTA+TGG | - | chr8.4:2677107-2677126 | MS.gene60161:CDS | 35.0% |
| ! | TCTCTGTAAAGAAGCTTTTC+AGG | + | chr8.4:2677095-2677114 | None:intergenic | 35.0% |
| !! | AGAAGAAAATGGTTTGGTGT+TGG | - | chr8.4:2677747-2677766 | MS.gene60161:CDS | 35.0% |
| !! | AGCTTTTCAGGAACATTTTG+AGG | + | chr8.4:2677083-2677102 | None:intergenic | 35.0% |
| !! | ATGAATATGGTGTTGGTGTT+TGG | - | chr8.4:2677561-2677580 | MS.gene60161:CDS | 35.0% |
| !! | CTAGAAGTAGGTTGATGAAA+GGG | - | chr8.4:2677924-2677943 | MS.gene60161:CDS | 35.0% |
| !! | GCTTTTCAGGAACATTTTGA+GGG | + | chr8.4:2677082-2677101 | None:intergenic | 35.0% |
| !! | TCTAGAAGTAGGTTGATGAA+AGG | - | chr8.4:2677923-2677942 | MS.gene60161:CDS | 35.0% |
| !! | TGAATATGGTGTTGGTGTTT+GGG | - | chr8.4:2677562-2677581 | MS.gene60161:CDS | 35.0% |
| AAAGAGTCAACGATGTTGGT+TGG | - | chr8.4:2677336-2677355 | MS.gene60161:intron | 40.0% | |
| AGAGTGAAATTCAACGTAGG+AGG | - | chr8.4:2676876-2676895 | MS.gene60161:CDS | 40.0% | |
| ATCTTAGATCTGCTACGAAC+AGG | - | chr8.4:2677044-2677063 | MS.gene60161:CDS | 40.0% | |
| CACCATGCAATGCCAATTTA+GGG | + | chr8.4:2677973-2677992 | None:intergenic | 40.0% | |
| CTAGACGTTAAAACCCATTC+AGG | + | chr8.4:2678043-2678062 | None:intergenic | 40.0% | |
| GCAGGAAGGAATTCTATGTT+GGG | - | chr8.4:2676936-2676955 | MS.gene60161:CDS | 40.0% | |
| GGAACCTTGTTACCCTAAAT+TGG | - | chr8.4:2677958-2677977 | MS.gene60161:CDS | 40.0% | |
| GGTGAATGAGTTTGAGGAAT+TGG | - | chr8.4:2677853-2677872 | MS.gene60161:CDS | 40.0% | |
| GTGATGCTGATAAGCTTCAA+TGG | - | chr8.4:2677642-2677661 | MS.gene60161:CDS | 40.0% | |
| GTTTGAGGAATTGGGTTTCA+TGG | - | chr8.4:2677862-2677881 | MS.gene60161:CDS | 40.0% | |
| TACCCTAAATTGGCATTGCA+TGG | - | chr8.4:2677968-2677987 | MS.gene60161:CDS | 40.0% | |
| TCTAGGTTAAGACGAAGCTA+TGG | - | chr8.4:2678058-2678077 | MS.gene60161:CDS | 40.0% | |
| TGCAGGAAGGAATTCTATGT+TGG | - | chr8.4:2676935-2676954 | MS.gene60161:CDS | 40.0% | |
| TTGTGTGGTGAATGAGTTTG+AGG | - | chr8.4:2677847-2677866 | MS.gene60161:CDS | 40.0% | |
| TTTGGCTGTGGATGAGAAAA+GGG | - | chr8.4:2677787-2677806 | MS.gene60161:CDS | 40.0% | |
| ! | AAGAGTCAACGATGTTGGTT+GGG | - | chr8.4:2677337-2677356 | MS.gene60161:intron | 40.0% |
| ! | ATTTTTCCATTGGAGGGGAT+AGG | - | chr8.4:2678095-2678114 | MS.gene60161:CDS | 40.0% |
| ! | GGGGTCAATTTGATGGTAAT+AGG | - | chr8.4:2677159-2677178 | MS.gene60161:CDS | 40.0% |
| !! | CTGAATGGGTTTTAACGTCT+AGG | - | chr8.4:2678041-2678060 | MS.gene60161:CDS | 40.0% |
| AAAAAGCCTATCCCCTCCAA+TGG | + | chr8.4:2678104-2678123 | None:intergenic | 45.0% | |
| AGGTTAAGACGAAGCTATGG+TGG | - | chr8.4:2678061-2678080 | MS.gene60161:CDS | 45.0% | |
| ATCACGTTCGTTCTGCAAAG+TGG | - | chr8.4:2677138-2677157 | MS.gene60161:CDS | 45.0% | |
| CAACACTTGCAAATGCAGGA+AGG | - | chr8.4:2676922-2676941 | MS.gene60161:CDS | 45.0% | |
| CCACCATGCAATGCCAATTT+AGG | + | chr8.4:2677974-2677993 | None:intergenic | 45.0% | |
| CCTAAATTGGCATTGCATGG+TGG | - | chr8.4:2677971-2677990 | MS.gene60161:CDS | 45.0% | |
| CTTTGGCTGTGGATGAGAAA+AGG | - | chr8.4:2677786-2677805 | MS.gene60161:CDS | 45.0% | |
| GAGAGATGCAATAGCAATGG+AGG | - | chr8.4:2677811-2677830 | MS.gene60161:CDS | 45.0% | |
| GCAAAGTGGGGTCAATTTGA+TGG | - | chr8.4:2677152-2677171 | MS.gene60161:CDS | 45.0% | |
| GCAACAACACTTGCAAATGC+AGG | - | chr8.4:2676918-2676937 | MS.gene60161:CDS | 45.0% | |
| GGTGAGAGATGCAATAGCAA+TGG | - | chr8.4:2677808-2677827 | MS.gene60161:CDS | 45.0% | |
| GGTTAAGACGAAGCTATGGT+GGG | - | chr8.4:2678062-2678081 | MS.gene60161:CDS | 45.0% | |
| TCACCAAGTGACCAACCTAA+AGG | + | chr8.4:2677626-2677645 | None:intergenic | 45.0% | |
| TCACGTTCGTTCTGCAAAGT+GGG | - | chr8.4:2677139-2677158 | MS.gene60161:CDS | 45.0% | |
| TTAGGGTAACAAGGTTCCTC+AGG | + | chr8.4:2677956-2677975 | None:intergenic | 45.0% | |
| ! | AGTGTTTTGTGGCCCTGAAT+GGG | - | chr8.4:2678027-2678046 | MS.gene60161:CDS | 45.0% |
| ! | GGTGTTTGGGATCAAGTTAC+TGG | - | chr8.4:2677575-2677594 | MS.gene60161:CDS | 45.0% |
| ! | GTAAGTGAAAGACTTGGTCG+TGG | - | chr8.4:2677386-2677405 | MS.gene60161:CDS | 45.0% |
| ! | TTGTGTTGCTCATGGTTGCA+TGG | - | chr8.4:2677259-2677278 | MS.gene60161:intron | 45.0% |
| !! | GTCTGATGTAGGTGCTACTT+TGG | - | chr8.4:2677769-2677788 | MS.gene60161:CDS | 45.0% |
| !! | GTTTGGTGTTGGTCTGATGT+AGG | - | chr8.4:2677758-2677777 | MS.gene60161:CDS | 45.0% |
| !! | TGAGGTGGAGTTCTAGAAGT+AGG | - | chr8.4:2677912-2677931 | MS.gene60161:CDS | 45.0% |
| CACGTTCGTTCTGCAAAGTG+GGG | - | chr8.4:2677140-2677159 | MS.gene60161:CDS | 50.0% | |
| GATGAAAGGGAAGATGCCTG+AGG | - | chr8.4:2677937-2677956 | MS.gene60161:CDS | 50.0% | |
| GATGGAACAGCAATTCGAGC+TGG | - | chr8.4:2677221-2677240 | MS.gene60161:CDS | 50.0% | |
| GCAACACAACAACCACCATC+TGG | + | chr8.4:2677248-2677267 | None:intergenic | 50.0% | |
| GTTCTGCTGCTAACAGTGTG+AGG | - | chr8.4:2677894-2677913 | MS.gene60161:CDS | 50.0% | |
| TCTGTTCAAGGACAAGCACC+TGG | - | chr8.4:2677197-2677216 | MS.gene60161:CDS | 50.0% | |
| ! | CAGTGTTTTGTGGCCCTGAA+TGG | - | chr8.4:2678026-2678045 | MS.gene60161:CDS | 50.0% |
| ! | CGAATTGCTGTTCCATCACC+AGG | + | chr8.4:2677218-2677237 | None:intergenic | 50.0% |
| ! | GAAAGACTTGGTCGTGGTGA+TGG | - | chr8.4:2677392-2677411 | MS.gene60161:CDS | 50.0% |
| ! | GGTGGTTGTTGTGTTGCTCA+TGG | - | chr8.4:2677251-2677270 | MS.gene60161:intron | 50.0% |
| !! | GAGCCTTTAGGTTGGTCACT+TGG | - | chr8.4:2677620-2677639 | MS.gene60161:CDS | 50.0% |
| !! | TGTAGGTGCTACTTTGGCTG+TGG | - | chr8.4:2677775-2677794 | MS.gene60161:CDS | 50.0% |
| ATTCGAGCTGGTCCAGATGG+TGG | - | chr8.4:2677233-2677252 | MS.gene60161:CDS | 55.0% | |
| CAAGGACAAGCACCTGGTGA+TGG | - | chr8.4:2677203-2677222 | MS.gene60161:CDS | 55.0% | |
| CTGCTGCTAACAGTGTGAGG+TGG | - | chr8.4:2677897-2677916 | MS.gene60161:CDS | 55.0% | |
| GCAATTCGAGCTGGTCCAGA+TGG | - | chr8.4:2677230-2677249 | MS.gene60161:CDS | 55.0% | |
| !! | AGACTTGGTCGTGGTGATGG+TGG | - | chr8.4:2677395-2677414 | MS.gene60161:CDS | 55.0% |
| !! | GGTCGTGGTGATGGTGGAAT+GGG | - | chr8.4:2677401-2677420 | MS.gene60161:CDS | 55.0% |
| !! | TGGTCGTGGTGATGGTGGAA+TGG | - | chr8.4:2677400-2677419 | MS.gene60161:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 2676858 | 2678186 | 2676858 | ID=MS.gene60161 |
| chr8.4 | mRNA | 2676858 | 2678186 | 2676858 | ID=MS.gene60161.t1;Parent=MS.gene60161 |
| chr8.4 | exon | 2677373 | 2678186 | 2677373 | ID=MS.gene60161.t1.exon1;Parent=MS.gene60161.t1 |
| chr8.4 | CDS | 2677373 | 2678186 | 2677373 | ID=cds.MS.gene60161.t1;Parent=MS.gene60161.t1 |
| chr8.4 | exon | 2676858 | 2677264 | 2676858 | ID=MS.gene60161.t1.exon2;Parent=MS.gene60161.t1 |
| chr8.4 | CDS | 2676858 | 2677264 | 2676858 | ID=cds.MS.gene60161.t1;Parent=MS.gene60161.t1 |
| Gene Sequence |
| Protein sequence |
