AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053932


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053932.t1 MTR_6g472110 98.246 399 7 0 1 399 1 399 0.0 817
MS.gene053932.t1 MTR_5g035690 50.985 406 172 12 1 399 1 386 8.47e-131 381
MS.gene053932.t1 MTR_5g035665 51.000 400 174 9 1 399 1 379 2.25e-128 375
MS.gene053932.t1 MTR_5g035750 49.505 404 182 10 1 399 1 387 2.74e-125 367
MS.gene053932.t1 MTR_5g035760 50.125 401 177 11 1 399 1 380 1.30e-121 357
MS.gene053932.t1 MTR_5g035670 48.750 400 185 8 1 399 1 381 2.10e-120 354
MS.gene053932.t1 MTR_6g016660 42.298 409 215 10 1 399 1 398 8.20e-102 307
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053932.t1 AT1G13480 43.781 402 208 9 1 399 1 387 4.83e-104 313
MS.gene053932.t1 AT1G13520 44.307 404 203 10 1 399 1 387 9.91e-102 307
MS.gene053932.t1 AT1G13530 44.802 404 199 10 1 399 1 385 3.71e-97 295
MS.gene053932.t1 AT1G13490 43.424 403 203 8 1 399 1 382 3.93e-93 285
MS.gene053932.t1 AT1G13500 45.343 408 192 12 1 399 1 386 1.76e-92 283
MS.gene053932.t1 AT1G13470 44.665 403 194 14 1 399 1 378 1.82e-90 278
MS.gene053932.t1 AT1G13490 42.537 402 189 9 1 399 1 363 2.15e-87 270
MS.gene053932.t1 AT1G13540 41.176 408 204 14 1 399 1 381 2.41e-87 270
MS.gene053932.t1 AT1G61600 38.837 430 223 11 1 399 1 421 1.40e-84 264
MS.gene053932.t1 AT1G13510 42.118 406 202 14 1 399 1 380 1.72e-84 263
MS.gene053932.t1 AT1G13550 39.851 404 216 9 1 396 1 385 1.15e-79 250

Find 88 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACCAAAACACCAGAATT+AGG 0.174233 5.3:+42490712 None:intergenic
AGAATTTGAAGGGACTAATA+AGG 0.248217 5.3:-42489073 MS.gene053932:CDS
TGATAATGATGATGGTAAAA+AGG 0.249854 5.3:-42489340 MS.gene053932:CDS
TTGAAAACAACCTCTTGTTT+TGG 0.266662 5.3:-42490676 MS.gene053932:CDS
AGGCCCTAATTCTGGTGTTT+TGG 0.301149 5.3:-42490716 MS.gene053932:CDS
GCTATGGTGAAATCGAATTC+TGG 0.330908 5.3:+42489516 None:intergenic
CCACCAGAAGGCCCTAATTC+TGG 0.339823 5.3:-42490724 MS.gene053932:CDS
CTGATATCTAAAGGATGAAT+TGG 0.361943 5.3:+42489738 None:intergenic
ACACCAGAATTAGGGCCTTC+TGG 0.363127 5.3:+42490721 None:intergenic
AGATTACACTAGAGCAGAAA+TGG 0.366742 5.3:-42489380 MS.gene053932:CDS
CAGGAGAGGGTTGGATGGCT+TGG 0.376011 5.3:-42489132 MS.gene053932:CDS
GGGAGAGTACCATGAAGTTA+AGG 0.382423 5.3:-42490650 MS.gene053932:CDS
TACTATGTCATACATCTTCA+TGG 0.383281 5.3:-42490499 MS.gene053932:CDS
GAACAGTGTGGGTTTGAGTA+TGG 0.387431 5.3:-42489181 MS.gene053932:CDS
CCCTTCATGTTTATCAAAGA+AGG 0.391686 5.3:-42489450 MS.gene053932:CDS
AAAGTGTTGTTGTGGGAAAA+TGG 0.398385 5.3:-42489479 MS.gene053932:CDS
ACATCAAGTGATTCAAGTCT+TGG 0.402196 5.3:-42489579 MS.gene053932:CDS
GGAGAGTACCATGAAGTTAA+GGG 0.402330 5.3:-42490649 MS.gene053932:CDS
ATCATCAGTTAAGGAGCAAA+TGG 0.407106 5.3:-42488957 MS.gene053932:CDS
GTAGAAGCAAAGTTACATTA+AGG 0.416879 5.3:-42489683 MS.gene053932:CDS
TTACCAAAACACCAGAATTA+GGG 0.422217 5.3:+42490713 None:intergenic
AAAGAAGTGGTTGTAATTGC+TGG 0.422244 5.3:-42489285 MS.gene053932:CDS
TGAGAGAATGAAGTGGGAGC+AGG 0.430736 5.3:-42489151 MS.gene053932:CDS
GCTAAATCTGTTGCTGAAGA+TGG 0.430828 5.3:-42489648 MS.gene053932:CDS
GGAATTTCAAGTTAAGAAAG+TGG 0.435170 5.3:-42489097 MS.gene053932:CDS
TCAAACACCATCATCAGTTA+AGG 0.444565 5.3:-42488966 MS.gene053932:CDS
AAGGCAAACCCTTAACTTCA+TGG 0.449187 5.3:+42490641 None:intergenic
AAGAAAGTGGAAGAATTTGA+AGG 0.451778 5.3:-42489084 MS.gene053932:CDS
GAATGAAGTGGGAGCAGGAG+AGG 0.455395 5.3:-42489146 MS.gene053932:CDS
GACAATGGCTGATTAAGAAC+TGG 0.473764 5.3:+42490532 None:intergenic
ATTTGCTCCTTAACTGATGA+TGG 0.474106 5.3:+42488959 None:intergenic
AATGAAGTGGGAGCAGGAGA+GGG 0.474655 5.3:-42489145 MS.gene053932:CDS
GAAATCGAATTCTGGTTTCC+CGG 0.474718 5.3:+42489524 None:intergenic
GACTTCTTGTACAAAGAAAG+AGG 0.484167 5.3:+42490769 None:intergenic
GAATTTGAAGGGACTAATAA+GGG 0.485288 5.3:-42489072 MS.gene053932:CDS
GAGAGGGTTGGATGGCTTGG+TGG 0.489813 5.3:-42489129 MS.gene053932:CDS
TGCTGGGTGGGAAGCTATGA+TGG 0.490086 5.3:-42489268 MS.gene053932:CDS
TATTTGTCACTGATATCTAA+AGG 0.492371 5.3:+42489729 None:intergenic
TCAAGTCTTGGAGAAGCATC+AGG 0.497137 5.3:-42489567 MS.gene053932:CDS
TCCTTCTTTGATAAACATGA+AGG 0.498261 5.3:+42489449 None:intergenic
ATGTATGACATAGTATTGAT+TGG 0.499829 5.3:+42490507 None:intergenic
CATCTTCATGGCAAGAAAAG+AGG 0.503885 5.3:-42490487 MS.gene053932:CDS
TTCTGAACATCTGTTTGCTA+TGG 0.504829 5.3:+42489500 None:intergenic
TTTGTTATAAAGAGATTGGA+TGG 0.511821 5.3:-42489012 MS.gene053932:CDS
GTAGATGATTCCCTCCGTGC+CGG 0.518251 5.3:-42489543 MS.gene053932:CDS
AAGTGGGAGCAGGAGAGGGT+TGG 0.525230 5.3:-42489141 MS.gene053932:CDS
TAGATGATTCCCTCCGTGCC+GGG 0.526204 5.3:-42489542 MS.gene053932:CDS
CTGATTAAGAACTGGAATGA+AGG 0.530740 5.3:+42490540 None:intergenic
TTCTGGTTTCCCGGCACGGA+GGG 0.530934 5.3:+42489533 None:intergenic
GAATTAGGGCCTTCTGGTGG+AGG 0.531123 5.3:+42490727 None:intergenic
CGAATTCTGGTTTCCCGGCA+CGG 0.531178 5.3:+42489529 None:intergenic
ATGGCTTGGTGGGAAAGAAA+AGG 0.534199 5.3:-42489118 MS.gene053932:CDS
TTTAATAGTATCAATAATGT+AGG 0.536802 5.3:-42489210 MS.gene053932:CDS
AGCTATGATGGATAATAAGA+TGG 0.539308 5.3:-42489256 MS.gene053932:CDS
TCATCAGTTAAGGAGCAAAT+GGG 0.542302 5.3:-42488956 MS.gene053932:CDS
AGAGGGTTGGATGGCTTGGT+GGG 0.548797 5.3:-42489128 MS.gene053932:CDS
GATTACACTAGAGCAGAAAT+GGG 0.553713 5.3:-42489379 MS.gene053932:CDS
TTTGTACAAGAAGTCTGAAG+AGG 0.555051 5.3:-42490761 MS.gene053932:CDS
GGGAGCAGGAGAGGGTTGGA+TGG 0.555243 5.3:-42489137 MS.gene053932:CDS
CTGATCTATAAAACAACTCA+AGG 0.565365 5.3:+42490602 None:intergenic
ATCTTCATGGCAAGAAAAGA+GGG 0.569344 5.3:-42490486 MS.gene053932:intron
AGTGGTTGTAATTGCTGGGT+GGG 0.569655 5.3:-42489280 MS.gene053932:CDS
TTGAAGGGACTAATAAGGGA+TGG 0.569939 5.3:-42489068 MS.gene053932:CDS
TGTTCAGAAAGTGTTGTTGT+GGG 0.572278 5.3:-42489486 MS.gene053932:CDS
TAACTCAAAGGAGGAAGATG+TGG 0.576074 5.3:-42489796 MS.gene053932:CDS
AGCAAAGTTACATTAAGGAG+TGG 0.577098 5.3:-42489678 MS.gene053932:CDS
AAAATTTGGATGTTATGTGT+TGG 0.578946 5.3:-42489043 MS.gene053932:CDS
AGAAAGTGGAAGAATTTGAA+GGG 0.580351 5.3:-42489083 MS.gene053932:CDS
TATGACATAGTATTGATTGG+AGG 0.584322 5.3:+42490510 None:intergenic
CCTTCTTTGATAAACATGAA+GGG 0.590946 5.3:+42489450 None:intergenic
GTAGGAGAAAAGAACAGTGT+GGG 0.596095 5.3:-42489192 MS.gene053932:CDS
CTGAAGATGGATACCCTCCA+AGG 0.601083 5.3:-42489635 MS.gene053932:CDS
CAATAGTTGAGAGAATGAAG+TGG 0.612002 5.3:-42489158 MS.gene053932:CDS
ATGTTCAGAAAGTGTTGTTG+TGG 0.614049 5.3:-42489487 MS.gene053932:CDS
GGAAGCATACAATAACTCAA+AGG 0.617419 5.3:-42489808 MS.gene053932:CDS
CTCTCATTACCTCCACCAGA+AGG 0.619265 5.3:-42490736 MS.gene053932:CDS
CTCTCCCAACCCAAAACAAG+AGG 0.619270 5.3:+42490666 None:intergenic
TGTAGGAGAAAAGAACAGTG+TGG 0.624432 5.3:-42489193 MS.gene053932:CDS
AATAGTTGAGAGAATGAAGT+GGG 0.629735 5.3:-42489157 MS.gene053932:CDS
AAGAAGTGGTTGTAATTGCT+GGG 0.631620 5.3:-42489284 MS.gene053932:CDS
TATAGAATATGTATGTGACT+AGG 0.634027 5.3:-42490792 None:intergenic
AGCATACAATAACTCAAAGG+AGG 0.645051 5.3:-42489805 MS.gene053932:CDS
TAGTATTGATTGGAGGACAA+TGG 0.649023 5.3:+42490517 None:intergenic
CCAGAATTAGGGCCTTCTGG+TGG 0.656141 5.3:+42490724 None:intergenic
AATGTAACTTTGCTTCTACG+AGG 0.675300 5.3:+42489687 None:intergenic
AAGTGGTTGTAATTGCTGGG+TGG 0.699538 5.3:-42489281 MS.gene053932:CDS
ATTCTGGTTTCCCGGCACGG+AGG 0.710825 5.3:+42489532 None:intergenic
ATGATGGTGTTTGAAAGCAT+AGG 0.759923 5.3:+42488975 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAATTTCTTAACT+TGG - chr5.3:42489290-42489309 MS.gene053932:CDS 10.0%
!! TCATGTAAAAAATTAAAAAT+TGG + chr5.3:42489845-42489864 None:intergenic 10.0%
!! TTTAATAGTATCAATAATGT+AGG - chr5.3:42490525-42490544 MS.gene053932:CDS 15.0%
!! AGTACTATATAACTAACATT+TGG + chr5.3:42489348-42489367 None:intergenic 20.0%
!! AGTATTATACTGATGTAATT+TGG - chr5.3:42489890-42489909 MS.gene053932:intron 20.0%
!!! AATTAAAAATTGGTTCAACA+CGG + chr5.3:42489835-42489854 None:intergenic 20.0%
!!! TAAATTTTTCGTCTGTTATT+TGG + chr5.3:42489501-42489520 None:intergenic 20.0%
! AAAATTTGGATGTTATGTGT+TGG - chr5.3:42490692-42490711 MS.gene053932:CDS 25.0%
! AAATAACAGGGAATATACTT+AGG - chr5.3:42489382-42489401 MS.gene053932:CDS 25.0%
! AATAAGGGATGGAAAAAATT+TGG - chr5.3:42490678-42490697 MS.gene053932:CDS 25.0%
! TATTTGTCACTGATATCTAA+AGG + chr5.3:42490009-42490028 None:intergenic 25.0%
! TTATATAGTACTACGACATA+AGG - chr5.3:42489356-42489375 MS.gene053932:CDS 25.0%
!! TTTCTAGTATTGTAGCATAA+GGG - chr5.3:42489614-42489633 MS.gene053932:CDS 25.0%
!! TTTGTTATAAAGAGATTGGA+TGG - chr5.3:42490723-42490742 MS.gene053932:CDS 25.0%
!!! AATTTGGTTTTTCTTCTGTA+GGG - chr5.3:42489906-42489925 MS.gene053932:intron 25.0%
!!! ATGTATGACATAGTATTGAT+TGG + chr5.3:42489231-42489250 None:intergenic 25.0%
!!! GACTTTTGTTATAAAGAGAT+TGG - chr5.3:42490719-42490738 MS.gene053932:CDS 25.0%
!!! GATAATGATGATGGTAAAAA+GGG - chr5.3:42490396-42490415 MS.gene053932:intron 25.0%
!!! TAATTTGGTTTTTCTTCTGT+AGG - chr5.3:42489905-42489924 MS.gene053932:intron 25.0%
!!! TGATAATGATGATGGTAAAA+AGG - chr5.3:42490395-42490414 MS.gene053932:intron 25.0%
!!! TTTTCATGTGATAATGATGA+TGG - chr5.3:42490387-42490406 MS.gene053932:intron 25.0%
!!! TTTTCTAGTATTGTAGCATA+AGG - chr5.3:42489613-42489632 MS.gene053932:CDS 25.0%
AAGAAAGTGGAAGAATTTGA+AGG - chr5.3:42490651-42490670 MS.gene053932:CDS 30.0%
AATAGTTGAGAGAATGAAGT+GGG - chr5.3:42490578-42490597 MS.gene053932:CDS 30.0%
ACATTGAATTTCGATGACAT+TGG - chr5.3:42489407-42489426 MS.gene053932:CDS 30.0%
AGAAAGTGGAAGAATTTGAA+GGG - chr5.3:42490652-42490671 MS.gene053932:CDS 30.0%
AGAATTTGAAGGGACTAATA+AGG - chr5.3:42490662-42490681 MS.gene053932:CDS 30.0%
ATTACCAAAACACCAGAATT+AGG + chr5.3:42489026-42489045 None:intergenic 30.0%
CCTTCTTTGATAAACATGAA+GGG + chr5.3:42490288-42490307 None:intergenic 30.0%
CTGATATCTAAAGGATGAAT+TGG + chr5.3:42490000-42490019 None:intergenic 30.0%
CTGATCTATAAAACAACTCA+AGG + chr5.3:42489136-42489155 None:intergenic 30.0%
GAATTTGAAGGGACTAATAA+GGG - chr5.3:42490663-42490682 MS.gene053932:CDS 30.0%
GACATAAGGTTGAAATAACA+GGG - chr5.3:42489370-42489389 MS.gene053932:CDS 30.0%
GTAGAAGCAAAGTTACATTA+AGG - chr5.3:42490052-42490071 MS.gene053932:intron 30.0%
GTTAGATTTGAATACAGGTT+GGG - chr5.3:42489750-42489769 MS.gene053932:CDS 30.0%
TAACTAACATTTGGTTGAAC+TGG + chr5.3:42489339-42489358 None:intergenic 30.0%
TACTATGTCATACATCTTCA+TGG - chr5.3:42489236-42489255 MS.gene053932:CDS 30.0%
TCCTTCTTTGATAAACATGA+AGG + chr5.3:42490289-42490308 None:intergenic 30.0%
TGTTAGATTTGAATACAGGT+TGG - chr5.3:42489749-42489768 MS.gene053932:CDS 30.0%
TTACCAAAACACCAGAATTA+GGG + chr5.3:42489025-42489044 None:intergenic 30.0%
TTCTACTTAAAAACCTTGGA+GGG + chr5.3:42490116-42490135 None:intergenic 30.0%
! ACTTCAGTGACTTTAAGTTT+CGG + chr5.3:42489473-42489492 None:intergenic 30.0%
!! AGCTATGATGGATAATAAGA+TGG - chr5.3:42490479-42490498 MS.gene053932:intron 30.0%
!! CTTGAGTTGTTTTATAGATC+AGG - chr5.3:42489134-42489153 MS.gene053932:CDS 30.0%
!! GGAATTTCAAGTTAAGAAAG+TGG - chr5.3:42490638-42490657 MS.gene053932:CDS 30.0%
!! TATGACATAGTATTGATTGG+AGG + chr5.3:42489228-42489247 None:intergenic 30.0%
!! TTGAAAACAACCTCTTGTTT+TGG - chr5.3:42489059-42489078 MS.gene053932:CDS 30.0%
!!! ATGTAGCTGAAAGTTTTTTG+TGG - chr5.3:42490502-42490521 MS.gene053932:CDS 30.0%
!!! GACATCAGTGTATTTTGATA+AGG - chr5.3:42489431-42489450 MS.gene053932:CDS 30.0%
!!! TGAAAACAACCTCTTGTTTT+GGG - chr5.3:42489060-42489079 MS.gene053932:CDS 30.0%
AAAGAAGTGGTTGTAATTGC+TGG - chr5.3:42490450-42490469 MS.gene053932:intron 35.0%
AAGAAGTGGTTGTAATTGCT+GGG - chr5.3:42490451-42490470 MS.gene053932:intron 35.0%
AATGTAACTTTGCTTCTACG+AGG + chr5.3:42490051-42490070 None:intergenic 35.0%
ACATCAAGTGATTCAAGTCT+TGG - chr5.3:42490156-42490175 MS.gene053932:intron 35.0%
AGATTACACTAGAGCAGAAA+TGG - chr5.3:42490355-42490374 MS.gene053932:intron 35.0%
AGCAAAGTTACATTAAGGAG+TGG - chr5.3:42490057-42490076 MS.gene053932:intron 35.0%
AGCATACAATAACTCAAAGG+AGG - chr5.3:42489930-42489949 MS.gene053932:intron 35.0%
ATCATCAGTTAAGGAGCAAA+TGG - chr5.3:42490778-42490797 MS.gene053932:CDS 35.0%
ATCTTCATGGCAAGAAAAGA+GGG - chr5.3:42489249-42489268 MS.gene053932:CDS 35.0%
ATTTGCTCCTTAACTGATGA+TGG + chr5.3:42490779-42490798 None:intergenic 35.0%
CAATAGTTGAGAGAATGAAG+TGG - chr5.3:42490577-42490596 MS.gene053932:CDS 35.0%
CACCTTCTACTTAAAAACCT+TGG + chr5.3:42490120-42490139 None:intergenic 35.0%
CCCTTCATGTTTATCAAAGA+AGG - chr5.3:42490285-42490304 MS.gene053932:intron 35.0%
CGACATAAGGTTGAAATAAC+AGG - chr5.3:42489369-42489388 MS.gene053932:CDS 35.0%
CTGATTAAGAACTGGAATGA+AGG + chr5.3:42489198-42489217 None:intergenic 35.0%
CTTAAGGGTGGAATTAAAGA+TGG - chr5.3:42489546-42489565 MS.gene053932:CDS 35.0%
CTTCTACTTAAAAACCTTGG+AGG + chr5.3:42490117-42490136 None:intergenic 35.0%
GAAACTTAAAGTCACTGAAG+TGG - chr5.3:42489472-42489491 MS.gene053932:CDS 35.0%
GACTTCTTGTACAAAGAAAG+AGG + chr5.3:42488969-42488988 None:intergenic 35.0%
GAGCTGTTAGATTTGAATAC+AGG - chr5.3:42489745-42489764 MS.gene053932:CDS 35.0%
GATTACACTAGAGCAGAAAT+GGG - chr5.3:42490356-42490375 MS.gene053932:intron 35.0%
TCAAACACCATCATCAGTTA+AGG - chr5.3:42490769-42490788 MS.gene053932:CDS 35.0%
TCATCAGTTAAGGAGCAAAT+GGG - chr5.3:42490779-42490798 MS.gene053932:CDS 35.0%
TGCTGTTGTTCAAAAAGAAG+TGG - chr5.3:42490437-42490456 MS.gene053932:intron 35.0%
TTAAACTCGATCATCAAAGC+AGG - chr5.3:42489518-42489537 MS.gene053932:CDS 35.0%
TTTGTACAAGAAGTCTGAAG+AGG - chr5.3:42488974-42488993 MS.gene053932:CDS 35.0%
! AACTCAAGGTTCATGTTTTG+AGG + chr5.3:42489122-42489141 None:intergenic 35.0%
! ATGATGGTGTTTGAAAGCAT+AGG + chr5.3:42490763-42490782 None:intergenic 35.0%
! GGAAGCATACAATAACTCAA+AGG - chr5.3:42489927-42489946 MS.gene053932:intron 35.0%
! TTCTGAACATCTGTTTGCTA+TGG + chr5.3:42490238-42490257 None:intergenic 35.0%
!! AAAGTGTTGTTGTGGGAAAA+TGG - chr5.3:42490256-42490275 MS.gene053932:intron 35.0%
!! ACTCAAGGTTCATGTTTTGA+GGG + chr5.3:42489121-42489140 None:intergenic 35.0%
!! ATGTTCAGAAAGTGTTGTTG+TGG - chr5.3:42490248-42490267 MS.gene053932:intron 35.0%
!! TAGTATTGATTGGAGGACAA+TGG + chr5.3:42489221-42489240 None:intergenic 35.0%
!! TGTTCAGAAAGTGTTGTTGT+GGG - chr5.3:42490249-42490268 MS.gene053932:intron 35.0%
!!! CAAGGTTTTTAAGTAGAAGG+TGG - chr5.3:42490118-42490137 MS.gene053932:intron 35.0%
!!! CTCCAAGGTTTTTAAGTAGA+AGG - chr5.3:42490115-42490134 MS.gene053932:intron 35.0%
AAGGCAAACCCTTAACTTCA+TGG + chr5.3:42489097-42489116 None:intergenic 40.0%
CATCTTCATGGCAAGAAAAG+AGG - chr5.3:42489248-42489267 MS.gene053932:CDS 40.0%
GACAATGGCTGATTAAGAAC+TGG + chr5.3:42489206-42489225 None:intergenic 40.0%
GCTAAATCTGTTGCTGAAGA+TGG - chr5.3:42490087-42490106 MS.gene053932:intron 40.0%
GCTATGGTGAAATCGAATTC+TGG + chr5.3:42490222-42490241 None:intergenic 40.0%
GTAGGAGAAAAGAACAGTGT+GGG - chr5.3:42490543-42490562 MS.gene053932:CDS 40.0%
TAACTCAAAGGAGGAAGATG+TGG - chr5.3:42489939-42489958 MS.gene053932:intron 40.0%
TATCTCTATTACCCTGAACG+TGG + chr5.3:42489811-42489830 None:intergenic 40.0%
TCATGCACATGTACTCATCA+TGG + chr5.3:42489683-42489702 None:intergenic 40.0%
TGTAGGAGAAAAGAACAGTG+TGG - chr5.3:42490542-42490561 MS.gene053932:CDS 40.0%
TTGAAGGGACTAATAAGGGA+TGG - chr5.3:42490667-42490686 MS.gene053932:CDS 40.0%
!! GAAATCGAATTCTGGTTTCC+CGG + chr5.3:42490214-42490233 None:intergenic 40.0%
!! GGAGAGTACCATGAAGTTAA+GGG - chr5.3:42489086-42489105 MS.gene053932:CDS 40.0%
!!! AACAACCTCTTGTTTTGGGT+TGG - chr5.3:42489064-42489083 MS.gene053932:CDS 40.0%
!!! ACAACCTCTTGTTTTGGGTT+GGG - chr5.3:42489065-42489084 MS.gene053932:CDS 40.0%
!!! AGGTTCATGTTTTGAGGGAA+AGG + chr5.3:42489116-42489135 None:intergenic 40.0%
AAGTGGTTGTAATTGCTGGG+TGG - chr5.3:42490454-42490473 MS.gene053932:intron 45.0%
AGTGGTTGTAATTGCTGGGT+GGG - chr5.3:42490455-42490474 MS.gene053932:intron 45.0%
ATCAAAGCAGGCGTCACTTA+AGG - chr5.3:42489530-42489549 MS.gene053932:CDS 45.0%
GAACAGTGTGGGTTTGAGTA+TGG - chr5.3:42490554-42490573 MS.gene053932:CDS 45.0%
TCAAAGCAGGCGTCACTTAA+GGG - chr5.3:42489531-42489550 MS.gene053932:CDS 45.0%
! AGGCCCTAATTCTGGTGTTT+TGG - chr5.3:42489019-42489038 MS.gene053932:CDS 45.0%
!! ATGGCTTGGTGGGAAAGAAA+AGG - chr5.3:42490617-42490636 MS.gene053932:CDS 45.0%
!! GGGAGAGTACCATGAAGTTA+AGG - chr5.3:42489085-42489104 MS.gene053932:CDS 45.0%
!! TCAAGTCTTGGAGAAGCATC+AGG - chr5.3:42490168-42490187 MS.gene053932:intron 45.0%
AACTCTGTTGCACGATGCAG+CGG - chr5.3:42489716-42489735 MS.gene053932:CDS 50.0%
AATGAAGTGGGAGCAGGAGA+GGG - chr5.3:42490590-42490609 MS.gene053932:CDS 50.0%
ACACCAGAATTAGGGCCTTC+TGG + chr5.3:42489017-42489036 None:intergenic 50.0%
CTCTCATTACCTCCACCAGA+AGG - chr5.3:42488999-42489018 MS.gene053932:CDS 50.0%
CTCTCCCAACCCAAAACAAG+AGG + chr5.3:42489072-42489091 None:intergenic 50.0%
CTGAAGATGGATACCCTCCA+AGG - chr5.3:42490100-42490119 MS.gene053932:intron 50.0%
GCAGCGAGTGCTATAACTGT+TGG + chr5.3:42489789-42489808 None:intergenic 50.0%
GCATCGTGCAACAGAGTTAG+AGG + chr5.3:42489714-42489733 None:intergenic 50.0%
TGAGAGAATGAAGTGGGAGC+AGG - chr5.3:42490584-42490603 MS.gene053932:CDS 50.0%
AAGCAGGCGTCACTTAAGGG+TGG - chr5.3:42489534-42489553 MS.gene053932:CDS 55.0%
CCACCAGAAGGCCCTAATTC+TGG - chr5.3:42489011-42489030 MS.gene053932:CDS 55.0%
CCAGAATTAGGGCCTTCTGG+TGG + chr5.3:42489014-42489033 None:intergenic 55.0%
GAATGAAGTGGGAGCAGGAG+AGG - chr5.3:42490589-42490608 MS.gene053932:CDS 55.0%
GAATTAGGGCCTTCTGGTGG+AGG + chr5.3:42489011-42489030 None:intergenic 55.0%
GTAGATGATTCCCTCCGTGC+CGG - chr5.3:42490192-42490211 MS.gene053932:intron 55.0%
TAGATGATTCCCTCCGTGCC+GGG - chr5.3:42490193-42490212 MS.gene053932:intron 55.0%
TGCTGGGTGGGAAGCTATGA+TGG - chr5.3:42490467-42490486 MS.gene053932:intron 55.0%
!! AGAGGGTTGGATGGCTTGGT+GGG - chr5.3:42490607-42490626 MS.gene053932:CDS 55.0%
!! CGAATTCTGGTTTCCCGGCA+CGG + chr5.3:42490209-42490228 None:intergenic 55.0%
AAGTGGGAGCAGGAGAGGGT+TGG - chr5.3:42490594-42490613 MS.gene053932:CDS 60.0%
AGCACTCGCTGCCACGTTCA+GGG - chr5.3:42489797-42489816 MS.gene053932:CDS 60.0%
CAGGAGAGGGTTGGATGGCT+TGG - chr5.3:42490603-42490622 MS.gene053932:CDS 60.0%
TAGCACTCGCTGCCACGTTC+AGG - chr5.3:42489796-42489815 MS.gene053932:CDS 60.0%
! GAGAGGGTTGGATGGCTTGG+TGG - chr5.3:42490606-42490625 MS.gene053932:CDS 60.0%
!! ATTCTGGTTTCCCGGCACGG+AGG + chr5.3:42490206-42490225 None:intergenic 60.0%
!! TTCTGGTTTCCCGGCACGGA+GGG + chr5.3:42490205-42490224 None:intergenic 60.0%
GGGAGCAGGAGAGGGTTGGA+TGG - chr5.3:42490598-42490617 MS.gene053932:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 42488951 42490806 42488951 ID=MS.gene053932
chr5.3 mRNA 42488951 42490806 42488951 ID=MS.gene053932.t1;Parent=MS.gene053932
chr5.3 exon 42490487 42490806 42490487 ID=MS.gene053932.t1.exon1;Parent=MS.gene053932.t1
chr5.3 CDS 42490487 42490806 42490487 ID=cds.MS.gene053932.t1;Parent=MS.gene053932.t1
chr5.3 exon 42488951 42489830 42488951 ID=MS.gene053932.t1.exon2;Parent=MS.gene053932.t1
chr5.3 CDS 42488951 42489830 42488951 ID=cds.MS.gene053932.t1;Parent=MS.gene053932.t1
Gene Sequence

>MS.gene053932

ATGTATGTGACTAGGCCTCTTTCTTTGTACAAGAAGTCTGAAGAGGCTCTCTCATTACCTCCACCAGAAGGCCCTAATTCTGGTGTTTTGGTAATTCAAGATAATGATTTGAAAACAACCTCTTGTTTTGGGTTGGGAGAGTACCATGAAGTTAAGGGTTTGCCTTTCCCTCAAAACATGAACCTTGAGTTGTTTTATAGATCAGGCATTTCTCTTAACAGAACTACTCATAAACACAATGTTGCCTTCATTCCAGTTCTTAATCAGCCATTGTCCTCCAATCAATACTATGTCATACATCTTCATGGCAAGAAAAGAGGGTAAGTCTTAATTTTGTGAAAAATAATAATTTCTTAACTTGGTTGTGTAGATCACTTATTTTGCACCAGTTCAACCAAATGTTAGTTATATAGTACTACGACATAAGGTTGAAATAACAGGGAATATACTTAGGTGACATTGAATTTCGATGACATTGGTGACATCAGTGTATTTTGATAAGGACAAAGTCACAAGTCACCGAAACTTAAAGTCACTGAAGTGGAATCCAAATAACAGACGAAAAATTTAAACTCGATCATCAAAGCAGGCGTCACTTAAGGGTGGAATTAAAGATGGATTTCTCATTTTACATTTTCTAGATTTTCATCATTATTTGAACTTTTTCTAGTATTGTAGCATAAGGGTGATTCAATTCTAGTATGTGAAATCAAAGTCACTAAAATTTCGCCATGATGAGTACATGTGCATGAGTTTGAATCCTCTAACTCTGTTGCACGATGCAGCGGACTTCAGAGCTGTTAGATTTGAATACAGGTTGGGTTTTGATTCAAATCCAACAGTTATAGCACTCGCTGCCACGTTCAGGGTAATAGAGATAGCCGTGTTGAACCAATTTTTAATTTTTTACATGAATGATTCAACTTCTCGACATGTTCAAGTATTATACTGATGTAATTTGGTTTTTCTTCTGTAGGGAAGCATACAATAACTCAAAGGAGGAAGATGTGGACACATTCTGTTTCTACAATTCTGTCTCTGAAGTACCAATTCATCCTTTAGATATCAGTGACAAATATCAAGAGTTCGAGATCTATCCTCGTAGAAGCAAAGTTACATTAAGGAGTGGTTTCTCAGCTAAATCTGTTGCTGAAGATGGATACCCTCCAAGGTTTTTAAGTAGAAGGTGGAAATTGAGTGCTTCAACATCAAGTGATTCAAGTCTTGGAGAAGCATCAGGTGTAGATGATTCCCTCCGTGCCGGGAAACCAGAATTCGATTTCACCATAGCAAACAGATGTTCAGAAAGTGTTGTTGTGGGAAAATGGTATTGTCCCTTCATGTTTATCAAAGAAGGAACTCACAGAACATTGAAAGAAGAAATGAGAAAATCAATGTTTTATGAGATTACACTAGAGCAGAAATGGGAACAAGTGTTTTCATGTGATAATGATGATGGTAAAAAGGGAAACACTGTGAATGTTGATGCTGTTGTTCAAAAAGAAGTGGTTGTAATTGCTGGGTGGGAAGCTATGATGGATAATAAGATGGATGTAGCTGAAAGTTTTTTGTGGTTTAATAGTATCAATAATGTAGGAGAAAAGAACAGTGTGGGTTTGAGTATGGCAATAGTTGAGAGAATGAAGTGGGAGCAGGAGAGGGTTGGATGGCTTGGTGGGAAAGAAAAGGAATTTCAAGTTAAGAAAGTGGAAGAATTTGAAGGGACTAATAAGGGATGGAAAAAATTTGGATGTTATGTGTTGGTTGAGACTTTTGTTATAAAGAGATTGGATGGAAGCATAGTATTGACCTATGCTTTCAAACACCATCATCAGTTAAGGAGCAAATGGGAATGA

Protein sequence

>MS.gene053932.t1

MYVTRPLSLYKKSEEALSLPPPEGPNSGVLVIQDNDLKTTSCFGLGEYHEVKGLPFPQNMNLELFYRSGISLNRTTHKHNVAFIPVLNQPLSSNQYYVIHLHGKKRGEAYNNSKEEDVDTFCFYNSVSEVPIHPLDISDKYQEFEIYPRRSKVTLRSGFSAKSVAEDGYPPRFLSRRWKLSASTSSDSSLGEASGVDDSLRAGKPEFDFTIANRCSESVVVGKWYCPFMFIKEGTHRTLKEEMRKSMFYEITLEQKWEQVFSCDNDDGKKGNTVNVDAVVQKEVVVIAGWEAMMDNKMDVAESFLWFNSINNVGEKNSVGLSMAIVERMKWEQERVGWLGGKEKEFQVKKVEEFEGTNKGWKKFGCYVLVETFVIKRLDGSIVLTYAFKHHHQLRSKWE