Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60277.t1 | XP_003588760.1 | 92.4 | 276 | 19 | 1 | 1 | 276 | 1 | 274 | 2.80E-134 | 488 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60277.t1 | O48781 | 55.6 | 277 | 118 | 2 | 1 | 276 | 1 | 273 | 5.7e-75 | 282.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60277.t1 | G7I700 | 92.4 | 276 | 19 | 1 | 1 | 276 | 1 | 274 | 2.0e-134 | 488.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene60277 | -0.807554 | 4.78E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene60277 | 0.815356 | 9.64E-52 | -1.69E-46 |
| MS.gene052493 | MS.gene60277 | 0.80564 | 1.21E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene60277 | 0.820263 | 7.52E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene60277 | 0.8105 | 1.12E-50 | -1.69E-46 |
| MS.gene059952 | MS.gene60277 | 0.813722 | 2.22E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene60277 | 0.816952 | 4.24E-52 | -1.69E-46 |
| MS.gene060697 | MS.gene60277 | 0.800962 | 1.13E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60277.t1 | MTR_1g012440 | 96.739 | 276 | 7 | 1 | 1 | 276 | 1 | 274 | 0.0 | 535 |
| MS.gene60277.t1 | MTR_3g107393 | 61.154 | 260 | 76 | 3 | 1 | 259 | 1 | 236 | 5.23e-100 | 293 |
| MS.gene60277.t1 | MTR_4g114550 | 57.762 | 277 | 110 | 2 | 1 | 275 | 1 | 272 | 1.36e-96 | 285 |
| MS.gene60277.t1 | MTR_4g027390 | 43.772 | 281 | 105 | 6 | 1 | 268 | 1 | 241 | 2.47e-64 | 202 |
| MS.gene60277.t1 | MTR_8g077020 | 38.163 | 283 | 151 | 4 | 1 | 270 | 1 | 272 | 1.43e-53 | 176 |
| MS.gene60277.t1 | MTR_0262s0060 | 39.726 | 219 | 87 | 6 | 1 | 206 | 1 | 187 | 4.95e-44 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60277.t1 | AT2G26660 | 56.989 | 279 | 111 | 3 | 1 | 276 | 1 | 273 | 5.45e-95 | 281 |
| MS.gene60277.t1 | AT5G20150 | 56.877 | 269 | 84 | 4 | 1 | 269 | 1 | 237 | 7.97e-92 | 272 |
| MS.gene60277.t1 | AT5G15330 | 38.411 | 302 | 147 | 7 | 1 | 276 | 1 | 289 | 3.48e-57 | 186 |
| MS.gene60277.t1 | AT5G15330 | 38.411 | 302 | 147 | 7 | 1 | 276 | 70 | 358 | 1.23e-56 | 186 |
| MS.gene60277.t1 | AT2G45130 | 39.711 | 277 | 107 | 6 | 1 | 269 | 1 | 225 | 3.50e-55 | 178 |
Find 53 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATGTTCTCCATATTT+TGG | 0.132016 | 1.1:-8672830 | None:intergenic |
| TTCAATACATCTTGGATAAA+AGG | 0.227691 | 1.1:-8672606 | None:intergenic |
| GTTGAAATTGAGAAATTTAA+TGG | 0.239620 | 1.1:+8670474 | MS.gene60277:CDS |
| TGGATCTCAGAAAGTTCTTT+TGG | 0.252029 | 1.1:-8672810 | None:intergenic |
| TTCTTCGAAACGGCGTCGTT+TGG | 0.281601 | 1.1:+8670386 | MS.gene60277:CDS |
| GAAGAAGAATCAATCTCTTT+AGG | 0.317856 | 1.1:-8670360 | None:intergenic |
| ACTTTCTGAGATCCAAAATA+TGG | 0.335458 | 1.1:+8672818 | MS.gene60277:CDS |
| CTTAGTTTCATTTGCAGTTG+TGG | 0.370514 | 1.1:-8672769 | None:intergenic |
| TTGCCCTAGAGACCCACTTT+TGG | 0.370556 | 1.1:-8672703 | None:intergenic |
| CCGGTAACGTTTGTTCGATC+TGG | 0.378382 | 1.1:-8670278 | None:intergenic |
| GACAGTAGGGAGGGAAATAG+TGG | 0.390036 | 1.1:+8671789 | MS.gene60277:CDS |
| CAGAAGCAACGATGAAGTTC+TGG | 0.393504 | 1.1:+8670241 | None:intergenic |
| CTGGGCCAAGAGTTCTGATA+TGG | 0.418354 | 1.1:+8671759 | MS.gene60277:CDS |
| CCAGATCGAACAAACGTTAC+CGG | 0.425418 | 1.1:+8670278 | MS.gene60277:CDS |
| AAGAAGAATATGTTATCAAA+TGG | 0.435300 | 1.1:+8670514 | MS.gene60277:CDS |
| AATTGCAAGACAAAGTTGCC+TGG | 0.440049 | 1.1:+8671740 | MS.gene60277:CDS |
| TGGATACTCTGAAAGAGATC+AGG | 0.441187 | 1.1:+8672874 | MS.gene60277:CDS |
| TCCTCTGCACAGTGAGACTT+TGG | 0.441395 | 1.1:+8672932 | MS.gene60277:CDS |
| CACAACTGCAAATGAAACTA+AGG | 0.463681 | 1.1:+8672770 | MS.gene60277:CDS |
| TTCCCCAAAAGTGGGTCTCT+AGG | 0.475364 | 1.1:+8672699 | MS.gene60277:CDS |
| GAAACGGCGTCGTTTGGATG+AGG | 0.475372 | 1.1:+8670392 | MS.gene60277:CDS |
| TGATAAGTTTCTTTCTTACA+AGG | 0.478308 | 1.1:+8670308 | MS.gene60277:CDS |
| CAACTCCATATCAGAACTCT+TGG | 0.480256 | 1.1:-8671764 | None:intergenic |
| AAGAAATATGATAAGCGAAC+CGG | 0.485081 | 1.1:+8672567 | MS.gene60277:CDS |
| ATGGCTGGTTCAATACATCT+TGG | 0.493443 | 1.1:-8672614 | None:intergenic |
| TCCCCAAAAGTGGGTCTCTA+GGG | 0.504729 | 1.1:+8672700 | MS.gene60277:CDS |
| GGAGTTGATGACAGTAGGGA+GGG | 0.527766 | 1.1:+8671780 | MS.gene60277:CDS |
| AGCGAACCGGTGCACTACTT+CGG | 0.531250 | 1.1:+8672580 | MS.gene60277:CDS |
| TCGAACAAACGTTACCGGAT+TGG | 0.531970 | 1.1:+8670283 | MS.gene60277:CDS |
| GCACAGTGAGACTTTGGTAG+AGG | 0.539946 | 1.1:+8672938 | MS.gene60277:CDS |
| AGAAACTTATCACGCCAATC+CGG | 0.542654 | 1.1:-8670297 | None:intergenic |
| CAAACTAACTACATCAGCAC+TGG | 0.554658 | 1.1:+8672854 | MS.gene60277:CDS |
| GATATGGAGTTGATGACAGT+AGG | 0.558831 | 1.1:+8671775 | MS.gene60277:CDS |
| AGAATATGTTATCAAATGGA+AGG | 0.560145 | 1.1:+8670518 | MS.gene60277:CDS |
| TGAAGGAGAGGTTACGAAAG+AGG | 0.561251 | 1.1:+8670425 | MS.gene60277:CDS |
| GGATACTCTGAAAGAGATCA+GGG | 0.567654 | 1.1:+8672875 | MS.gene60277:CDS |
| CATATCAGAACTCTTGGCCC+AGG | 0.567662 | 1.1:-8671758 | None:intergenic |
| GATGAGGATGGTGGTGCTGA+AGG | 0.568091 | 1.1:+8670408 | MS.gene60277:CDS |
| TGGAGTTGATGACAGTAGGG+AGG | 0.576482 | 1.1:+8671779 | MS.gene60277:CDS |
| ATTGCAAGACAAAGTTGCCT+GGG | 0.577637 | 1.1:+8671741 | MS.gene60277:CDS |
| GCAATCCTTGTCAACTAGTG+AGG | 0.598101 | 1.1:+8672722 | MS.gene60277:CDS |
| ATATGGAGTTGATGACAGTA+GGG | 0.604313 | 1.1:+8671776 | MS.gene60277:CDS |
| AAAGTCTCACTGTGCAGAGG+AGG | 0.607575 | 1.1:-8672930 | None:intergenic |
| CGGCGTCGTTTGGATGAGGA+TGG | 0.613998 | 1.1:+8670396 | MS.gene60277:CDS |
| ACCAAAGTCTCACTGTGCAG+AGG | 0.620459 | 1.1:-8672933 | None:intergenic |
| AGGTAACCGAAGTAGTGCAC+CGG | 0.636993 | 1.1:-8672586 | None:intergenic |
| TGTGCTTAACAAGCTTGTGA+AGG | 0.649462 | 1.1:+8672650 | MS.gene60277:CDS |
| TATAGTGCACTTAACTACAC+AGG | 0.649872 | 1.1:+8671844 | MS.gene60277:CDS |
| CGTCGTTTGGATGAGGATGG+TGG | 0.657509 | 1.1:+8670399 | MS.gene60277:CDS |
| GGATGGTGGTGCTGAAGGAG+AGG | 0.662335 | 1.1:+8670413 | MS.gene60277:CDS |
| ACTCTGAAAGAGATCAGGGG+TGG | 0.668669 | 1.1:+8672879 | MS.gene60277:CDS |
| CAAGCTTGTGAAGGAGTGTG+AGG | 0.691985 | 1.1:+8672659 | MS.gene60277:CDS |
| GATACTCTGAAAGAGATCAG+GGG | 0.742895 | 1.1:+8672876 | MS.gene60277:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTCATATTATAAATGATA+GGG | - | chr1.1:8672047-8672066 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTTGCTGTAATA+TGG | + | chr1.1:8670580-8670599 | MS.gene60277:intron | 15.0% |
| !!! | TACTTTTTTTTTTTACTAGT+AGG | - | chr1.1:8671454-8671473 | None:intergenic | 15.0% |
| !!! | TTTTTAACTTTAATCGATTA+TGG | + | chr1.1:8670545-8670564 | MS.gene60277:intron | 15.0% |
| !! | AAGAAGAATATGTTATCAAA+TGG | + | chr1.1:8670514-8670533 | MS.gene60277:CDS | 20.0% |
| !! | ATTTGACAAAACTATAATCT+TGG | - | chr1.1:8670661-8670680 | None:intergenic | 20.0% |
| !! | GTTCTCATATTATAAATGAT+AGG | - | chr1.1:8672048-8672067 | None:intergenic | 20.0% |
| !! | GTTGAAATTGAGAAATTTAA+TGG | + | chr1.1:8670474-8670493 | MS.gene60277:CDS | 20.0% |
| !! | TAAACACAATATAATCAGAT+AGG | + | chr1.1:8672414-8672433 | MS.gene60277:intron | 20.0% |
| !!! | ATCCAATGTATCATTATTTT+TGG | + | chr1.1:8670889-8670908 | MS.gene60277:intron | 20.0% |
| ! | AAGCATCATAGATTATGAAA+TGG | - | chr1.1:8670864-8670883 | None:intergenic | 25.0% |
| ! | ACAATTTAGATCAGAATTGT+CGG | + | chr1.1:8670816-8670835 | MS.gene60277:intron | 25.0% |
| ! | ACCTTAAATATCAATGAATG+TGG | + | chr1.1:8671052-8671071 | MS.gene60277:intron | 25.0% |
| ! | AGAATATGTTATCAAATGGA+AGG | + | chr1.1:8670518-8670537 | MS.gene60277:CDS | 25.0% |
| ! | AGAATGTATGAATCTTAACA+TGG | + | chr1.1:8671095-8671114 | MS.gene60277:intron | 25.0% |
| ! | ATAATCAGATAGGAAAACTA+GGG | + | chr1.1:8672424-8672443 | MS.gene60277:intron | 25.0% |
| ! | CAAAAACTTCAACAAAATCA+TGG | - | chr1.1:8670947-8670966 | None:intergenic | 25.0% |
| ! | CTCAAATTATTAACATGTGT+CGG | - | chr1.1:8670750-8670769 | None:intergenic | 25.0% |
| ! | CTCCAAAAATAATGATACAT+TGG | - | chr1.1:8670894-8670913 | None:intergenic | 25.0% |
| ! | GAATGTATGAATCTTAACAT+GGG | + | chr1.1:8671096-8671115 | MS.gene60277:intron | 25.0% |
| ! | TACAATATACTTTGCAAATG+AGG | - | chr1.1:8671965-8671984 | None:intergenic | 25.0% |
| ! | TATAATCAGATAGGAAAACT+AGG | + | chr1.1:8672423-8672442 | MS.gene60277:intron | 25.0% |
| ! | TCCACATTCATTGATATTTA+AGG | - | chr1.1:8671056-8671075 | None:intergenic | 25.0% |
| ! | TGATAAGTTTCTTTCTTACA+AGG | + | chr1.1:8670308-8670327 | MS.gene60277:CDS | 25.0% |
| ! | TTCAATACATCTTGGATAAA+AGG | - | chr1.1:8672609-8672628 | None:intergenic | 25.0% |
| !! | AAGAGGTTAATGATTTTCTT+AGG | + | chr1.1:8670442-8670461 | MS.gene60277:CDS | 25.0% |
| !! | AATACGTATAATTTTACCAC+TGG | + | chr1.1:8671363-8671382 | MS.gene60277:intron | 25.0% |
| !! | ACCATATTTTGCAAATAAGA+TGG | + | chr1.1:8672259-8672278 | MS.gene60277:intron | 25.0% |
| !! | ATACGTATAATTTTACCACT+GGG | + | chr1.1:8671364-8671383 | MS.gene60277:intron | 25.0% |
| !! | TGAAAATGTTCTCCATATTT+TGG | - | chr1.1:8672833-8672852 | None:intergenic | 25.0% |
| !!! | CATATATTGTATTTCTGGAA+AGG | + | chr1.1:8671169-8671188 | MS.gene60277:intron | 25.0% |
| !!! | GTTTTAGGGGTATTAATTAA+TGG | + | chr1.1:8672148-8672167 | MS.gene60277:intron | 25.0% |
| !!! | TAATGATTTTCTTAGGTTGT+TGG | + | chr1.1:8670449-8670468 | MS.gene60277:CDS | 25.0% |
| AACTTATCCTCGAAGTAAAA+TGG | + | chr1.1:8671270-8671289 | MS.gene60277:intron | 30.0% | |
| AAGAAATATGATAAGCGAAC+CGG | + | chr1.1:8672567-8672586 | MS.gene60277:CDS | 30.0% | |
| AATGATAATTCAGTCCTTAG+AGG | - | chr1.1:8672091-8672110 | None:intergenic | 30.0% | |
| ACTCGGCTAAAATACATTTA+CGG | - | chr1.1:8671493-8671512 | None:intergenic | 30.0% | |
| ATGATTTCTTTGACTAGGTT+GGG | + | chr1.1:8672469-8672488 | MS.gene60277:intron | 30.0% | |
| CATCATAGGATAGTAACATA+TGG | + | chr1.1:8671917-8671936 | MS.gene60277:intron | 30.0% | |
| CTTCTAGTCATAAAATCACT+CGG | - | chr1.1:8671510-8671529 | None:intergenic | 30.0% | |
| GAAAGATGATTTCTTTGACT+AGG | + | chr1.1:8672464-8672483 | MS.gene60277:intron | 30.0% | |
| GAAGAAGAATCAATCTCTTT+AGG | - | chr1.1:8670363-8670382 | None:intergenic | 30.0% | |
| GTCAGCATATATTGTATTTC+TGG | + | chr1.1:8671164-8671183 | MS.gene60277:intron | 30.0% | |
| GTTGCATAAAATCAAGTGAA+TGG | + | chr1.1:8672390-8672409 | MS.gene60277:intron | 30.0% | |
| TCTTAGAAATAGAATACGCT+GGG | - | chr1.1:8671694-8671713 | None:intergenic | 30.0% | |
| TTACTATCCTATGATGCAAA+AGG | - | chr1.1:8671913-8671932 | None:intergenic | 30.0% | |
| TTCTTAGAAATAGAATACGC+TGG | - | chr1.1:8671695-8671714 | None:intergenic | 30.0% | |
| TTGAGTTTGAAGAAATCAAG+TGG | + | chr1.1:8670919-8670938 | MS.gene60277:intron | 30.0% | |
| ! | ACAAATTCCTTTTGCATCAT+AGG | + | chr1.1:8671903-8671922 | MS.gene60277:intron | 30.0% |
| ! | CTTGTCTGTGTTGTAAATTT+TGG | + | chr1.1:8671412-8671431 | MS.gene60277:intron | 30.0% |
| ! | GCAAATGAGTTACAGTTTTA+GGG | + | chr1.1:8672134-8672153 | MS.gene60277:intron | 30.0% |
| ! | GCCATCTTATTTGCAAAATA+TGG | - | chr1.1:8672263-8672282 | None:intergenic | 30.0% |
| ! | TAATAGTCCATTTTACTTCG+AGG | - | chr1.1:8671280-8671299 | None:intergenic | 30.0% |
| ! | TACGTATAATTTTACCACTG+GGG | + | chr1.1:8671365-8671384 | MS.gene60277:intron | 30.0% |
| ! | TAGCAATCTTTTCTGATCTT+GGG | + | chr1.1:8671217-8671236 | MS.gene60277:intron | 30.0% |
| ! | TATTCTTGTTTGTCAGTAGA+TGG | + | chr1.1:8672368-8672387 | MS.gene60277:intron | 30.0% |
| ! | TGAAGTTTTTGCTACAATCA+CGG | + | chr1.1:8670956-8670975 | MS.gene60277:intron | 30.0% |
| ! | TGCAAATGAGTTACAGTTTT+AGG | + | chr1.1:8672133-8672152 | MS.gene60277:intron | 30.0% |
| ! | TTAGCAATCTTTTCTGATCT+TGG | + | chr1.1:8671216-8671235 | MS.gene60277:intron | 30.0% |
| !! | ACTTTCTGAGATCCAAAATA+TGG | + | chr1.1:8672818-8672837 | MS.gene60277:CDS | 30.0% |
| !! | ATGCAGTTAGTGGATTAAAT+AGG | + | chr1.1:8671020-8671039 | MS.gene60277:intron | 30.0% |
| !! | CAAATGAGTTACAGTTTTAG+GGG | + | chr1.1:8672135-8672154 | MS.gene60277:intron | 30.0% |
| !! | TGCAGTTAGTGGATTAAATA+GGG | + | chr1.1:8671021-8671040 | MS.gene60277:intron | 30.0% |
| AAAAACCTCACTAGTTGACA+AGG | - | chr1.1:8672730-8672749 | None:intergenic | 35.0% | |
| AGGTGAAAATTGCAGACATA+TGG | - | chr1.1:8671614-8671633 | None:intergenic | 35.0% | |
| ATCAATGAATGTGGAACAGA+GGG | + | chr1.1:8671061-8671080 | MS.gene60277:intron | 35.0% | |
| CACAACTGCAAATGAAACTA+AGG | + | chr1.1:8672770-8672789 | MS.gene60277:CDS | 35.0% | |
| CTTAGTTTCATTTGCAGTTG+TGG | - | chr1.1:8672772-8672791 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCTTCGAAA+CGG | + | chr1.1:8670376-8670395 | MS.gene60277:CDS | 35.0% | |
| GAACCAATGAGAAATGAGTT+TGG | + | chr1.1:8672064-8672083 | MS.gene60277:intron | 35.0% | |
| GATGATTTCTTTGACTAGGT+TGG | + | chr1.1:8672468-8672487 | MS.gene60277:intron | 35.0% | |
| TAATCCACTAACTGCATGAT+CGG | - | chr1.1:8671017-8671036 | None:intergenic | 35.0% | |
| TATAGTGCACTTAACTACAC+AGG | + | chr1.1:8671844-8671863 | MS.gene60277:CDS | 35.0% | |
| TATCAATGAATGTGGAACAG+AGG | + | chr1.1:8671060-8671079 | MS.gene60277:intron | 35.0% | |
| TCATATGCTCAACTTAAACG+CGG | - | chr1.1:8671988-8672007 | None:intergenic | 35.0% | |
| TCGCTTAAAATTCATGCACA+GGG | - | chr1.1:8671884-8671903 | None:intergenic | 35.0% | |
| TGCATTTCTAAACTGAGTCA+GGG | + | chr1.1:8672311-8672330 | MS.gene60277:intron | 35.0% | |
| TGCTGACAATTGACAAAGAA+AGG | - | chr1.1:8671151-8671170 | None:intergenic | 35.0% | |
| TTGCATTTCTAAACTGAGTC+AGG | + | chr1.1:8672310-8672329 | MS.gene60277:intron | 35.0% | |
| ! | AGCATTATTTTCCCCAAAAG+TGG | + | chr1.1:8672690-8672709 | MS.gene60277:CDS | 35.0% |
| ! | GCATTATTTTCCCCAAAAGT+GGG | + | chr1.1:8672691-8672710 | MS.gene60277:CDS | 35.0% |
| ! | GGATCTCAGAAAGTTCTTTT+GGG | - | chr1.1:8672812-8672831 | None:intergenic | 35.0% |
| ! | TGGATCTCAGAAAGTTCTTT+TGG | - | chr1.1:8672813-8672832 | None:intergenic | 35.0% |
| !! | ACTTCTTATGTTTGCTATGC+AGG | + | chr1.1:8671717-8671736 | MS.gene60277:intron | 35.0% |
| !! | ATATGGAGTTGATGACAGTA+GGG | + | chr1.1:8671776-8671795 | MS.gene60277:CDS | 35.0% |
| !! | GCAGTTAGTGGATTAAATAG+GGG | + | chr1.1:8671022-8671041 | MS.gene60277:intron | 35.0% |
| !! | TGATTTTCTTAGGTTGTTGG+AGG | + | chr1.1:8670452-8670471 | MS.gene60277:CDS | 35.0% |
| !!! | AGCACATCGATTTTGAAGAA+TGG | - | chr1.1:8672636-8672655 | None:intergenic | 35.0% |
| !!! | AGGGAAATAGTGGATTTTCA+TGG | + | chr1.1:8671799-8671818 | MS.gene60277:CDS | 35.0% |
| AAATCCGATCATGCAGTTAG+TGG | + | chr1.1:8671010-8671029 | MS.gene60277:intron | 40.0% | |
| AATTGCAAGACAAAGTTGCC+TGG | + | chr1.1:8671740-8671759 | MS.gene60277:CDS | 40.0% | |
| AGAAACTTATCACGCCAATC+CGG | - | chr1.1:8670300-8670319 | None:intergenic | 40.0% | |
| ATAGGAAAACTAGGGTGTGT+AGG | + | chr1.1:8672432-8672451 | MS.gene60277:intron | 40.0% | |
| ATTGCAAGACAAAGTTGCCT+GGG | + | chr1.1:8671741-8671760 | MS.gene60277:CDS | 40.0% | |
| CAAACTAACTACATCAGCAC+TGG | + | chr1.1:8672854-8672873 | MS.gene60277:CDS | 40.0% | |
| CAACTCCATATCAGAACTCT+TGG | - | chr1.1:8671767-8671786 | None:intergenic | 40.0% | |
| GAAATGAGTTTGGACCTCTA+AGG | + | chr1.1:8672074-8672093 | MS.gene60277:intron | 40.0% | |
| GGTCCAAACTCATTTCTCAT+TGG | - | chr1.1:8672070-8672089 | None:intergenic | 40.0% | |
| GTCGCTTAAAATTCATGCAC+AGG | - | chr1.1:8671885-8671904 | None:intergenic | 40.0% | |
| TCAATGAATGTGGAACAGAG+GGG | + | chr1.1:8671062-8671081 | MS.gene60277:intron | 40.0% | |
| TCTCATTCTTTGTGCAGGTT+TGG | + | chr1.1:8672533-8672552 | MS.gene60277:intron | 40.0% | |
| TCTCTGTGACATGGAAAAGT+TGG | - | chr1.1:8671650-8671669 | None:intergenic | 40.0% | |
| TCTTCTCTCATTCTTTGTGC+AGG | + | chr1.1:8672528-8672547 | MS.gene60277:intron | 40.0% | |
| TGTGCTTAACAAGCTTGTGA+AGG | + | chr1.1:8672650-8672669 | MS.gene60277:CDS | 40.0% | |
| ! | ATGGCTGGTTCAATACATCT+TGG | - | chr1.1:8672617-8672636 | None:intergenic | 40.0% |
| ! | GATACTCTGAAAGAGATCAG+GGG | + | chr1.1:8672876-8672895 | MS.gene60277:CDS | 40.0% |
| ! | GGATACTCTGAAAGAGATCA+GGG | + | chr1.1:8672875-8672894 | MS.gene60277:CDS | 40.0% |
| ! | GTCAACTAGTGAGGTTTTTG+AGG | + | chr1.1:8672731-8672750 | MS.gene60277:CDS | 40.0% |
| ! | TGGATACTCTGAAAGAGATC+AGG | + | chr1.1:8672874-8672893 | MS.gene60277:CDS | 40.0% |
| ! | TTTTCTGATCTTGGGACTGT+TGG | + | chr1.1:8671225-8671244 | MS.gene60277:intron | 40.0% |
| !! | AAGTTGGTGTATGCAGAACA+AGG | - | chr1.1:8671634-8671653 | None:intergenic | 40.0% |
| !! | AGTGGATTTTCATGGAGAGA+TGG | + | chr1.1:8671807-8671826 | MS.gene60277:CDS | 40.0% |
| !! | GATATGGAGTTGATGACAGT+AGG | + | chr1.1:8671775-8671794 | MS.gene60277:CDS | 40.0% |
| !!! | CAGAAAGTTCTTTTGGGACA+TGG | - | chr1.1:8672806-8672825 | None:intergenic | 40.0% |
| !!! | CATCGATTTTGAAGAATGGC+TGG | - | chr1.1:8672632-8672651 | None:intergenic | 40.0% |
| CAATGAATGTGGAACAGAGG+GGG | + | chr1.1:8671063-8671082 | MS.gene60277:intron | 45.0% | |
| CCAGATCGAACAAACGTTAC+CGG | + | chr1.1:8670278-8670297 | MS.gene60277:CDS | 45.0% | |
| GCAATCCTTGTCAACTAGTG+AGG | + | chr1.1:8672722-8672741 | MS.gene60277:CDS | 45.0% | |
| TCGAACAAACGTTACCGGAT+TGG | + | chr1.1:8670283-8670302 | MS.gene60277:CDS | 45.0% | |
| TGAAGGAGAGGTTACGAAAG+AGG | + | chr1.1:8670425-8670444 | MS.gene60277:CDS | 45.0% | |
| AAAGTCTCACTGTGCAGAGG+AGG | - | chr1.1:8672933-8672952 | None:intergenic | 50.0% | |
| ACCAAAGTCTCACTGTGCAG+AGG | - | chr1.1:8672936-8672955 | None:intergenic | 50.0% | |
| ACTAGGGTGTGTAGGACAGT+AGG | + | chr1.1:8672440-8672459 | MS.gene60277:intron | 50.0% | |
| AGACGTGACTCCTTGAGATG+TGG | + | chr1.1:8671667-8671686 | MS.gene60277:intron | 50.0% | |
| AGGTAACCGAAGTAGTGCAC+CGG | - | chr1.1:8672589-8672608 | None:intergenic | 50.0% | |
| CAACACAGACAAGACGCATC+AGG | - | chr1.1:8671405-8671424 | None:intergenic | 50.0% | |
| CATATCAGAACTCTTGGCCC+AGG | - | chr1.1:8671761-8671780 | None:intergenic | 50.0% | |
| CATGGGTCGTTGTTTGCTCT+TGG | + | chr1.1:8671113-8671132 | MS.gene60277:intron | 50.0% | |
| CCGGTAACGTTTGTTCGATC+TGG | - | chr1.1:8670281-8670300 | None:intergenic | 50.0% | |
| GACAGTAGGGAGGGAAATAG+TGG | + | chr1.1:8671789-8671808 | MS.gene60277:CDS | 50.0% | |
| GCACAGTGAGACTTTGGTAG+AGG | + | chr1.1:8672938-8672957 | MS.gene60277:CDS | 50.0% | |
| TCCCCAAAAGTGGGTCTCTA+GGG | + | chr1.1:8672700-8672719 | MS.gene60277:CDS | 50.0% | |
| TCCTCTGCACAGTGAGACTT+TGG | + | chr1.1:8672932-8672951 | MS.gene60277:CDS | 50.0% | |
| TCTGATCTTGGGACTGTTGG+TGG | + | chr1.1:8671228-8671247 | MS.gene60277:intron | 50.0% | |
| TTCCCCAAAAGTGGGTCTCT+AGG | + | chr1.1:8672699-8672718 | MS.gene60277:CDS | 50.0% | |
| TTCTTCGAAACGGCGTCGTT+TGG | + | chr1.1:8670386-8670405 | MS.gene60277:CDS | 50.0% | |
| ! | ACTCTGAAAGAGATCAGGGG+TGG | + | chr1.1:8672879-8672898 | MS.gene60277:CDS | 50.0% |
| ! | ATCTTGGGACTGTTGGTGGA+AGG | + | chr1.1:8671232-8671251 | MS.gene60277:intron | 50.0% |
| ! | CAAGCTTGTGAAGGAGTGTG+AGG | + | chr1.1:8672659-8672678 | MS.gene60277:CDS | 50.0% |
| ! | CTGGGCCAAGAGTTCTGATA+TGG | + | chr1.1:8671759-8671778 | MS.gene60277:CDS | 50.0% |
| ! | TTGCCCTAGAGACCCACTTT+TGG | - | chr1.1:8672706-8672725 | None:intergenic | 50.0% |
| !! | GGAGTTGATGACAGTAGGGA+GGG | + | chr1.1:8671780-8671799 | MS.gene60277:CDS | 50.0% |
| !! | TGCCCTAGAGACCCACTTTT+GGG | - | chr1.1:8672705-8672724 | None:intergenic | 50.0% |
| !! | TGGAGTTGATGACAGTAGGG+AGG | + | chr1.1:8671779-8671798 | MS.gene60277:CDS | 50.0% |
| ACAAGACGCATCAGGCCCTT+TGG | - | chr1.1:8671397-8671416 | None:intergenic | 55.0% | |
| AGCGAACCGGTGCACTACTT+CGG | + | chr1.1:8672580-8672599 | MS.gene60277:CDS | 55.0% | |
| CAAGACGCATCAGGCCCTTT+GGG | - | chr1.1:8671396-8671415 | None:intergenic | 55.0% | |
| CGTCGTTTGGATGAGGATGG+TGG | + | chr1.1:8670399-8670418 | MS.gene60277:CDS | 55.0% | |
| GAAACGGCGTCGTTTGGATG+AGG | + | chr1.1:8670392-8670411 | MS.gene60277:CDS | 55.0% | |
| GGAGTCACGTCTCTGTGACA+TGG | - | chr1.1:8671659-8671678 | None:intergenic | 55.0% | |
| GGGTCGTTGTTTGCTCTTGG+TGG | + | chr1.1:8671116-8671135 | MS.gene60277:intron | 55.0% | |
| TACGCTGGGTCCACATCTCA+AGG | - | chr1.1:8671680-8671699 | None:intergenic | 55.0% | |
| ! | GATGAGGATGGTGGTGCTGA+AGG | + | chr1.1:8670408-8670427 | MS.gene60277:CDS | 55.0% |
| !! | GCCCTAGAGACCCACTTTTG+GGG | - | chr1.1:8672704-8672723 | None:intergenic | 55.0% |
| ACCACTGGGGTCTAGCCCAA+AGG | + | chr1.1:8671378-8671397 | MS.gene60277:intron | 60.0% | |
| CCACTGGGGTCTAGCCCAAA+GGG | + | chr1.1:8671379-8671398 | MS.gene60277:intron | 60.0% | |
| CGGCGTCGTTTGGATGAGGA+TGG | + | chr1.1:8670396-8670415 | MS.gene60277:CDS | 60.0% | |
| ! | GGATGGTGGTGCTGAAGGAG+AGG | + | chr1.1:8670413-8670432 | MS.gene60277:CDS | 60.0% |
| ! | CCCTTTGGGCTAGACCCCAG+TGG | - | chr1.1:8671382-8671401 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 8670252 | 8672965 | 8670252 | ID=MS.gene60277 |
| chr1.1 | mRNA | 8670252 | 8672965 | 8670252 | ID=MS.gene60277.t1;Parent=MS.gene60277 |
| chr1.1 | exon | 8670252 | 8670539 | 8670252 | ID=MS.gene60277.t1.exon1;Parent=MS.gene60277.t1 |
| chr1.1 | CDS | 8670252 | 8670539 | 8670252 | ID=cds.MS.gene60277.t1;Parent=MS.gene60277.t1 |
| chr1.1 | exon | 8671739 | 8671865 | 8671739 | ID=MS.gene60277.t1.exon2;Parent=MS.gene60277.t1 |
| chr1.1 | CDS | 8671739 | 8671865 | 8671739 | ID=cds.MS.gene60277.t1;Parent=MS.gene60277.t1 |
| chr1.1 | exon | 8672550 | 8672965 | 8672550 | ID=MS.gene60277.t1.exon3;Parent=MS.gene60277.t1 |
| chr1.1 | CDS | 8672550 | 8672965 | 8672550 | ID=cds.MS.gene60277.t1;Parent=MS.gene60277.t1 |
| Gene Sequence |
| Protein sequence |
