Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60331.t1 | XP_003608925.1 | 97 | 401 | 12 | 0 | 1 | 401 | 1 | 401 | 3.30E-224 | 787.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60331.t1 | O48716 | 34.1 | 340 | 199 | 8 | 59 | 394 | 98 | 416 | 1.0e-45 | 185.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60331.t1 | G7JNR9 | 97.0 | 401 | 12 | 0 | 1 | 401 | 1 | 401 | 2.4e-224 | 787.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051118 | MS.gene60331 | 0.806521 | 7.90E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene60331 | 0.803676 | 3.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60331 | MS.gene006731 | PPI |
| MS.gene60331 | MS.gene070761 | PPI |
| MS.gene60331 | MS.gene070760 | PPI |
| MS.gene60331 | MS.gene045436 | PPI |
| MS.gene60331 | MS.gene070758 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60331.t1 | MTR_4g106480 | 97.007 | 401 | 12 | 0 | 1 | 401 | 1 | 401 | 0.0 | 799 |
| MS.gene60331.t1 | MTR_3g078380 | 62.774 | 411 | 116 | 10 | 14 | 401 | 18 | 414 | 5.81e-173 | 489 |
| MS.gene60331.t1 | MTR_5g035980 | 50.246 | 406 | 160 | 10 | 33 | 401 | 48 | 448 | 9.39e-128 | 375 |
| MS.gene60331.t1 | MTR_8g089650 | 45.995 | 387 | 178 | 11 | 26 | 398 | 61 | 430 | 7.29e-107 | 322 |
| MS.gene60331.t1 | MTR_4g104410 | 43.251 | 363 | 184 | 12 | 39 | 397 | 20 | 364 | 8.74e-84 | 260 |
| MS.gene60331.t1 | MTR_5g018520 | 41.298 | 339 | 178 | 7 | 59 | 395 | 99 | 418 | 4.20e-81 | 256 |
| MS.gene60331.t1 | MTR_1g021590 | 41.983 | 343 | 168 | 12 | 59 | 394 | 111 | 429 | 1.26e-79 | 253 |
| MS.gene60331.t1 | MTR_4g068457 | 38.776 | 343 | 187 | 7 | 59 | 395 | 130 | 455 | 2.86e-76 | 245 |
| MS.gene60331.t1 | MTR_2g060070 | 35.965 | 342 | 191 | 12 | 60 | 399 | 67 | 382 | 1.29e-64 | 212 |
| MS.gene60331.t1 | MTR_2g101410 | 32.593 | 405 | 235 | 13 | 5 | 395 | 26 | 406 | 2.56e-50 | 175 |
| MS.gene60331.t1 | MTR_3g110185 | 34.174 | 357 | 206 | 12 | 48 | 398 | 78 | 411 | 3.23e-49 | 178 |
| MS.gene60331.t1 | MTR_1g034785 | 26.316 | 228 | 131 | 7 | 176 | 379 | 114 | 328 | 1.68e-15 | 78.2 |
| MS.gene60331.t1 | MTR_1g072140 | 26.809 | 235 | 137 | 8 | 170 | 396 | 18 | 225 | 1.52e-12 | 68.6 |
| MS.gene60331.t1 | MTR_8g028700 | 28.251 | 223 | 124 | 11 | 179 | 394 | 230 | 423 | 1.87e-12 | 69.3 |
| MS.gene60331.t1 | MTR_6g004040 | 24.569 | 232 | 149 | 9 | 169 | 396 | 5 | 214 | 6.85e-11 | 64.7 |
| MS.gene60331.t1 | MTR_3g106080 | 22.659 | 331 | 178 | 12 | 47 | 343 | 333 | 619 | 8.19e-11 | 64.3 |
| MS.gene60331.t1 | MTR_1g054300 | 28.230 | 209 | 121 | 9 | 162 | 358 | 99 | 290 | 8.91e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60331.t1 | AT5G50120 | 55.703 | 377 | 146 | 7 | 36 | 399 | 19 | 387 | 1.95e-144 | 416 |
| MS.gene60331.t1 | AT1G24130 | 55.882 | 374 | 151 | 8 | 33 | 398 | 45 | 412 | 6.93e-131 | 382 |
| MS.gene60331.t1 | AT1G24530 | 44.974 | 378 | 178 | 11 | 28 | 398 | 51 | 405 | 2.32e-99 | 302 |
| MS.gene60331.t1 | AT2G26490 | 40.294 | 340 | 178 | 8 | 59 | 394 | 98 | 416 | 1.56e-77 | 247 |
| MS.gene60331.t1 | AT3G50390 | 37.255 | 357 | 201 | 9 | 44 | 395 | 85 | 423 | 1.91e-74 | 239 |
| MS.gene60331.t1 | AT3G18950 | 39.942 | 343 | 181 | 9 | 59 | 395 | 140 | 463 | 1.59e-72 | 234 |
| MS.gene60331.t1 | AT4G34380 | 38.905 | 347 | 184 | 9 | 59 | 395 | 127 | 455 | 1.01e-69 | 228 |
| MS.gene60331.t1 | AT1G49450 | 38.202 | 356 | 189 | 10 | 52 | 395 | 129 | 465 | 2.42e-69 | 226 |
| MS.gene60331.t1 | AT3G51930 | 38.028 | 355 | 182 | 12 | 60 | 399 | 64 | 395 | 5.41e-69 | 224 |
| MS.gene60331.t1 | AT1G47610 | 37.822 | 349 | 178 | 12 | 59 | 395 | 26 | 347 | 8.08e-67 | 216 |
| MS.gene60331.t1 | AT3G49180 | 33.488 | 215 | 109 | 10 | 176 | 368 | 116 | 318 | 4.29e-14 | 73.9 |
| MS.gene60331.t1 | AT3G49660 | 22.350 | 349 | 171 | 11 | 95 | 394 | 15 | 312 | 6.92e-13 | 69.3 |
| MS.gene60331.t1 | AT5G49200 | 27.602 | 221 | 132 | 8 | 179 | 396 | 130 | 325 | 7.51e-12 | 67.0 |
| MS.gene60331.t1 | AT4G02730 | 32.394 | 142 | 78 | 5 | 256 | 395 | 31 | 156 | 2.46e-11 | 65.1 |
Find 68 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTTGGACTGTGATATTA+AGG | 0.272095 | 8.2:+18973586 | MS.gene60331:CDS |
| ACAATAGTTAGGCACTTAAT+TGG | 0.277575 | 8.2:-18973512 | None:intergenic |
| GTTGAGGGTGAGAATGAATA+TGG | 0.282172 | 8.2:-18972686 | None:intergenic |
| ATGTTGGGAGTGTGGCTAAA+TGG | 0.285118 | 8.2:-18972863 | None:intergenic |
| TCAATATTGGTATCTGAAAA+AGG | 0.299182 | 8.2:+18973302 | MS.gene60331:CDS |
| CCTTGTTATATTCTGTTTCA+TGG | 0.304199 | 8.2:+18973009 | MS.gene60331:CDS |
| ATATCCTCTTTAACACTTGT+AGG | 0.315862 | 8.2:+18972609 | MS.gene60331:CDS |
| AACCAAAGACTTCACGTGTT+TGG | 0.328930 | 8.2:+18973055 | MS.gene60331:CDS |
| TTCCAAACACGTGAAGTCTT+TGG | 0.336054 | 8.2:-18973057 | None:intergenic |
| AGGATAAGACAATTCGGATT+TGG | 0.370163 | 8.2:+18973423 | MS.gene60331:CDS |
| AACACTAACACAATAGTATC+TGG | 0.378047 | 8.2:+18972717 | MS.gene60331:CDS |
| GTATTGTTGTTTGAGTGTTT+TGG | 0.382666 | 8.2:+18973475 | MS.gene60331:CDS |
| TTGAGATTCGTTGTTGATAT+TGG | 0.387479 | 8.2:-18972826 | None:intergenic |
| CACAAAGTCTATATTGTGTT+TGG | 0.388010 | 8.2:+18973367 | MS.gene60331:CDS |
| TTTGGCTGTGGTTTCCGATT+TGG | 0.391666 | 8.2:+18973385 | MS.gene60331:CDS |
| AAGAATTATGAAATTGTTGT+GGG | 0.404491 | 8.2:-18972548 | None:intergenic |
| AAAACCATGTTAATATTAGA+AGG | 0.405172 | 8.2:+18972919 | MS.gene60331:CDS |
| ACATTTGTTAGTTGATACTT+TGG | 0.417662 | 8.2:+18973202 | MS.gene60331:CDS |
| CAAGGTTCCATCTTTAGATA+AGG | 0.424143 | 8.2:-18972991 | None:intergenic |
| TGTTGGGAGTGTGGCTAAAT+GGG | 0.428968 | 8.2:-18972862 | None:intergenic |
| AAGATAACAAAATCCGCGTT+TGG | 0.438563 | 8.2:+18972796 | MS.gene60331:CDS |
| GTCTATATTGTGTTTGGCTG+TGG | 0.439005 | 8.2:+18973373 | MS.gene60331:CDS |
| AGTGATCAAGCACAATAGTT+AGG | 0.447101 | 8.2:-18973523 | None:intergenic |
| GTGAAACGATCTATGAATGT+TGG | 0.451524 | 8.2:-18972879 | None:intergenic |
| AGACTTCACGTGTTTGGAAT+CGG | 0.453279 | 8.2:+18973061 | MS.gene60331:CDS |
| AACACAATAGTATCTGGAAA+TGG | 0.466792 | 8.2:+18972723 | MS.gene60331:CDS |
| TGCATGTGATAGATCAATAT+TGG | 0.470368 | 8.2:+18973289 | MS.gene60331:CDS |
| GCAATCACAGTTTCTAATGA+TGG | 0.473911 | 8.2:+18973113 | MS.gene60331:CDS |
| TGAAACGATCTATGAATGTT+GGG | 0.478701 | 8.2:-18972878 | None:intergenic |
| GAAGAATTATGAAATTGTTG+TGG | 0.479398 | 8.2:-18972549 | None:intergenic |
| AATGGTAATTTGATAGTCAT+AGG | 0.480190 | 8.2:+18973329 | MS.gene60331:CDS |
| CTTGTTATATTCTGTTTCAT+GGG | 0.480779 | 8.2:+18973010 | MS.gene60331:CDS |
| ACTTTGGAGAAACACAGGTC+TGG | 0.494679 | 8.2:+18973218 | MS.gene60331:CDS |
| CCATGATGTGACTTCTGTGT+TGG | 0.496060 | 8.2:-18972655 | None:intergenic |
| TGGACTGTGATATTAAGGTT+TGG | 0.496672 | 8.2:+18973591 | MS.gene60331:CDS |
| TAGTGTTAATTGATTGTTGA+GGG | 0.498235 | 8.2:-18972701 | None:intergenic |
| AGAACCACTGCACACCAAAT+CGG | 0.501162 | 8.2:-18973399 | None:intergenic |
| AAATATACCGTTTACAGAAG+AGG | 0.503801 | 8.2:-18973626 | None:intergenic |
| CTTTGGAGAAACACAGGTCT+GGG | 0.512071 | 8.2:+18973219 | MS.gene60331:CDS |
| TCTCTTGCCTTATCTAAAGA+TGG | 0.516196 | 8.2:+18972984 | MS.gene60331:CDS |
| CAGGTCTGGGATTAATGCAT+TGG | 0.528247 | 8.2:+18973232 | MS.gene60331:CDS |
| GTTCTGAGGATAAGACAATT+CGG | 0.528674 | 8.2:+18973417 | MS.gene60331:CDS |
| GTAGGAAAATTCCTTTACAC+TGG | 0.545108 | 8.2:+18972627 | MS.gene60331:CDS |
| GCATTGGCTCTTAACAGTGA+TGG | 0.550237 | 8.2:+18973248 | MS.gene60331:CDS |
| GTTATTAGAGTCGTTGCTGA+AGG | 0.556540 | 8.2:-18972448 | None:intergenic |
| ATAGTCATAGGTGCTCTTCG+TGG | 0.558858 | 8.2:+18973341 | MS.gene60331:CDS |
| CAGAGTTGTGAGGCATGTGA+AGG | 0.571298 | 8.2:-18972571 | None:intergenic |
| CCAACACAGAAGTCACATCA+TGG | 0.577575 | 8.2:+18972655 | MS.gene60331:CDS |
| CTTGTCTGAATGAACTACAA+TGG | 0.582865 | 8.2:-18972757 | None:intergenic |
| TTCATGGGACAGAACAATCA+AGG | 0.585469 | 8.2:+18973025 | MS.gene60331:CDS |
| TTGATACTTTGGAGAAACAC+AGG | 0.587467 | 8.2:+18973213 | MS.gene60331:CDS |
| GGTGAGAATGAATATGGGAA+AGG | 0.601558 | 8.2:-18972680 | None:intergenic |
| TTGAGGGTGAGAATGAATAT+GGG | 0.604046 | 8.2:-18972685 | None:intergenic |
| TGTGGGTTTGAGTTGAGAGA+AGG | 0.611992 | 8.2:-18972531 | None:intergenic |
| TGTTGGATGAACCAGTGTAA+AGG | 0.614019 | 8.2:-18972638 | None:intergenic |
| TTAGTGTTAATTGATTGTTG+AGG | 0.615795 | 8.2:-18972702 | None:intergenic |
| TGTGCCTTCTAATATTAACA+TGG | 0.616075 | 8.2:-18972923 | None:intergenic |
| ATCTATGAATGTTGGGAGTG+TGG | 0.617369 | 8.2:-18972871 | None:intergenic |
| TTTGGTGTGCAGTGGTTCTG+AGG | 0.623985 | 8.2:+18973403 | MS.gene60331:CDS |
| AATGATGGATATGTTTACAC+CGG | 0.626851 | 8.2:+18973128 | MS.gene60331:CDS |
| CCATGAAACAGAATATAACA+AGG | 0.635096 | 8.2:-18973009 | None:intergenic |
| AAGACAATTCGGATTTGGCG+AGG | 0.637548 | 8.2:+18973428 | MS.gene60331:CDS |
| GTTTCCGATTTGGTGTGCAG+TGG | 0.647994 | 8.2:+18973395 | MS.gene60331:CDS |
| GAGATGAGACTGTGTCAACA+TGG | 0.652437 | 8.2:-18972965 | None:intergenic |
| TGTAGAATTTCAGAGTTGTG+AGG | 0.653037 | 8.2:-18972581 | None:intergenic |
| GGGACAGAACAATCAAGGTG+TGG | 0.660498 | 8.2:+18973030 | MS.gene60331:CDS |
| TTGTGAAGAAAGAGTACGTG+TGG | 0.685509 | 8.2:-18972490 | None:intergenic |
| TGAGAGAAGGAACTGATGCG+AGG | 0.688278 | 8.2:-18972518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAACAGATAAAAAAATTA+AGG | + | chr8.2:18973151-18973170 | MS.gene60331:CDS | 15.0% |
| !! | AAAACCATGTTAATATTAGA+AGG | + | chr8.2:18972919-18972938 | MS.gene60331:CDS | 20.0% |
| !! | AAGAATTATGAAATTGTTGT+GGG | - | chr8.2:18972551-18972570 | None:intergenic | 20.0% |
| !! | CAGATAAAAAAATTAAGGTT+TGG | + | chr8.2:18973156-18973175 | MS.gene60331:CDS | 20.0% |
| !!! | AATTTTTTTATCTGTTGATC+CGG | - | chr8.2:18973150-18973169 | None:intergenic | 20.0% |
| !!! | CTAATATTAACATGGTTTTT+CGG | - | chr8.2:18972918-18972937 | None:intergenic | 20.0% |
| !!! | TAATATTAACATGGTTTTTC+GGG | - | chr8.2:18972917-18972936 | None:intergenic | 20.0% |
| ! | AAGGTTTGGAAGAAAAATAA+AGG | + | chr8.2:18973170-18973189 | MS.gene60331:CDS | 25.0% |
| ! | ATAAAAAAAGATGCTTCAGA+CGG | - | chr8.2:18973557-18973576 | None:intergenic | 25.0% |
| ! | GAAGAATTATGAAATTGTTG+TGG | - | chr8.2:18972552-18972571 | None:intergenic | 25.0% |
| ! | TAGTGTTAATTGATTGTTGA+GGG | - | chr8.2:18972704-18972723 | None:intergenic | 25.0% |
| ! | TCAATATTGGTATCTGAAAA+AGG | + | chr8.2:18973302-18973321 | MS.gene60331:CDS | 25.0% |
| ! | TTAGTGTTAATTGATTGTTG+AGG | - | chr8.2:18972705-18972724 | None:intergenic | 25.0% |
| !! | AATGGTAATTTGATAGTCAT+AGG | + | chr8.2:18973329-18973348 | MS.gene60331:CDS | 25.0% |
| !! | ACATTTGTTAGTTGATACTT+TGG | + | chr8.2:18973202-18973221 | MS.gene60331:CDS | 25.0% |
| !! | CTTGTTATATTCTGTTTCAT+GGG | + | chr8.2:18973010-18973029 | MS.gene60331:CDS | 25.0% |
| !!! | GTGTGGTAATTAACTTTTTT+TGG | - | chr8.2:18972476-18972495 | None:intergenic | 25.0% |
| AACACAATAGTATCTGGAAA+TGG | + | chr8.2:18972723-18972742 | MS.gene60331:CDS | 30.0% | |
| AACACTAACACAATAGTATC+TGG | + | chr8.2:18972717-18972736 | MS.gene60331:CDS | 30.0% | |
| AAGTTTGGACTGTGATATTA+AGG | + | chr8.2:18973586-18973605 | MS.gene60331:CDS | 30.0% | |
| ACAATAGTTAGGCACTTAAT+TGG | - | chr8.2:18973515-18973534 | None:intergenic | 30.0% | |
| ATATCCTCTTTAACACTTGT+AGG | + | chr8.2:18972609-18972628 | MS.gene60331:CDS | 30.0% | |
| CACAAAGTCTATATTGTGTT+TGG | + | chr8.2:18973367-18973386 | MS.gene60331:CDS | 30.0% | |
| CCATGAAACAGAATATAACA+AGG | - | chr8.2:18973012-18973031 | None:intergenic | 30.0% | |
| GTATCTGAAAAAGGTGAAAA+TGG | + | chr8.2:18973311-18973330 | MS.gene60331:CDS | 30.0% | |
| TGAAACGATCTATGAATGTT+GGG | - | chr8.2:18972881-18972900 | None:intergenic | 30.0% | |
| TGCATGTGATAGATCAATAT+TGG | + | chr8.2:18973289-18973308 | MS.gene60331:CDS | 30.0% | |
| TGTGCCTTCTAATATTAACA+TGG | - | chr8.2:18972926-18972945 | None:intergenic | 30.0% | |
| TTGAGATTCGTTGTTGATAT+TGG | - | chr8.2:18972829-18972848 | None:intergenic | 30.0% | |
| ! | CCTTGTTATATTCTGTTTCA+TGG | + | chr8.2:18973009-18973028 | MS.gene60331:CDS | 30.0% |
| ! | TTTTATCTACAGTGGAAGTT+TGG | + | chr8.2:18973571-18973590 | MS.gene60331:CDS | 30.0% |
| ! | TTTTCCTACAAGTGTTAAAG+AGG | - | chr8.2:18972616-18972635 | None:intergenic | 30.0% |
| !! | AATGATGGATATGTTTACAC+CGG | + | chr8.2:18973128-18973147 | MS.gene60331:CDS | 30.0% |
| !!! | GCATCTTTTTTTATCTACAG+TGG | + | chr8.2:18973563-18973582 | MS.gene60331:CDS | 30.0% |
| !!! | GTATTGTTGTTTGAGTGTTT+TGG | + | chr8.2:18973475-18973494 | MS.gene60331:CDS | 30.0% |
| AAGATAACAAAATCCGCGTT+TGG | + | chr8.2:18972796-18972815 | MS.gene60331:CDS | 35.0% | |
| AAGGCACAAAAAATGCACAT+GGG | + | chr8.2:18972938-18972957 | MS.gene60331:CDS | 35.0% | |
| AGGATAAGACAATTCGGATT+TGG | + | chr8.2:18973423-18973442 | MS.gene60331:CDS | 35.0% | |
| AGTGATCAAGCACAATAGTT+AGG | - | chr8.2:18973526-18973545 | None:intergenic | 35.0% | |
| CAAGGTTCCATCTTTAGATA+AGG | - | chr8.2:18972994-18973013 | None:intergenic | 35.0% | |
| CTTGTCTGAATGAACTACAA+TGG | - | chr8.2:18972760-18972779 | None:intergenic | 35.0% | |
| GCAATCACAGTTTCTAATGA+TGG | + | chr8.2:18973113-18973132 | MS.gene60331:CDS | 35.0% | |
| GTAGGAAAATTCCTTTACAC+TGG | + | chr8.2:18972627-18972646 | MS.gene60331:CDS | 35.0% | |
| GTGAAACGATCTATGAATGT+TGG | - | chr8.2:18972882-18972901 | None:intergenic | 35.0% | |
| TCTCTTGCCTTATCTAAAGA+TGG | + | chr8.2:18972984-18973003 | MS.gene60331:CDS | 35.0% | |
| TGGACTGTGATATTAAGGTT+TGG | + | chr8.2:18973591-18973610 | MS.gene60331:CDS | 35.0% | |
| TGTAGAATTTCAGAGTTGTG+AGG | - | chr8.2:18972584-18972603 | None:intergenic | 35.0% | |
| TTGAGGGTGAGAATGAATAT+GGG | - | chr8.2:18972688-18972707 | None:intergenic | 35.0% | |
| ! | TTGATACTTTGGAGAAACAC+AGG | + | chr8.2:18973213-18973232 | MS.gene60331:CDS | 35.0% |
| !! | GATGGTTCTGTTTTGTATTC+TGG | + | chr8.2:18973266-18973285 | MS.gene60331:CDS | 35.0% |
| !! | GTTCTGAGGATAAGACAATT+CGG | + | chr8.2:18973417-18973436 | MS.gene60331:CDS | 35.0% |
| !! | TATTGGTGATTTTCCAAACG+CGG | - | chr8.2:18972812-18972831 | None:intergenic | 35.0% |
| !! | TGTTGTTTGAGTGTTTTGGA+AGG | + | chr8.2:18973479-18973498 | MS.gene60331:CDS | 35.0% |
| !!! | GTTGTTTGAGTGTTTTGGAA+GGG | + | chr8.2:18973480-18973499 | MS.gene60331:CDS | 35.0% |
| AACCAAAGACTTCACGTGTT+TGG | + | chr8.2:18973055-18973074 | MS.gene60331:CDS | 40.0% | |
| ATCTATGAATGTTGGGAGTG+TGG | - | chr8.2:18972874-18972893 | None:intergenic | 40.0% | |
| GGTGAGAATGAATATGGGAA+AGG | - | chr8.2:18972683-18972702 | None:intergenic | 40.0% | |
| GTCTATATTGTGTTTGGCTG+TGG | + | chr8.2:18973373-18973392 | MS.gene60331:CDS | 40.0% | |
| GTTATTAGAGTCGTTGCTGA+AGG | - | chr8.2:18972451-18972470 | None:intergenic | 40.0% | |
| GTTGAGGGTGAGAATGAATA+TGG | - | chr8.2:18972689-18972708 | None:intergenic | 40.0% | |
| TGTTGGATGAACCAGTGTAA+AGG | - | chr8.2:18972641-18972660 | None:intergenic | 40.0% | |
| TTCATGGGACAGAACAATCA+AGG | + | chr8.2:18973025-18973044 | MS.gene60331:CDS | 40.0% | |
| TTCCAAACACGTGAAGTCTT+TGG | - | chr8.2:18973060-18973079 | None:intergenic | 40.0% | |
| ! | AGACTTCACGTGTTTGGAAT+CGG | + | chr8.2:18973061-18973080 | MS.gene60331:CDS | 40.0% |
| ! | GAAGGCACAAAAAATGCACA+TGG | + | chr8.2:18972937-18972956 | MS.gene60331:CDS | 40.0% |
| ! | TTGTGAAGAAAGAGTACGTG+TGG | - | chr8.2:18972493-18972512 | None:intergenic | 40.0% |
| !!! | AGTGTTTTGGAAGGGCATAA+AGG | + | chr8.2:18973488-18973507 | MS.gene60331:CDS | 40.0% |
| !!! | TAACATGGTTTTTCGGGATG+AGG | - | chr8.2:18972911-18972930 | None:intergenic | 40.0% |
| AAGACAATTCGGATTTGGCG+AGG | + | chr8.2:18973428-18973447 | MS.gene60331:CDS | 45.0% | |
| AGAACCACTGCACACCAAAT+CGG | - | chr8.2:18973402-18973421 | None:intergenic | 45.0% | |
| ATAGTCATAGGTGCTCTTCG+TGG | + | chr8.2:18973341-18973360 | MS.gene60331:CDS | 45.0% | |
| CCAACACAGAAGTCACATCA+TGG | + | chr8.2:18972655-18972674 | MS.gene60331:CDS | 45.0% | |
| CCATGATGTGACTTCTGTGT+TGG | - | chr8.2:18972658-18972677 | None:intergenic | 45.0% | |
| GAGATGAGACTGTGTCAACA+TGG | - | chr8.2:18972968-18972987 | None:intergenic | 45.0% | |
| TTTGGCTGTGGTTTCCGATT+TGG | + | chr8.2:18973385-18973404 | MS.gene60331:CDS | 45.0% | |
| ! | ACTTTGGAGAAACACAGGTC+TGG | + | chr8.2:18973218-18973237 | MS.gene60331:CDS | 45.0% |
| ! | ATGTTGGGAGTGTGGCTAAA+TGG | - | chr8.2:18972866-18972885 | None:intergenic | 45.0% |
| ! | CAGGTCTGGGATTAATGCAT+TGG | + | chr8.2:18973232-18973251 | MS.gene60331:CDS | 45.0% |
| ! | CTTTGGAGAAACACAGGTCT+GGG | + | chr8.2:18973219-18973238 | MS.gene60331:CDS | 45.0% |
| ! | TGTTGGGAGTGTGGCTAAAT+GGG | - | chr8.2:18972865-18972884 | None:intergenic | 45.0% |
| !! | GCATTGGCTCTTAACAGTGA+TGG | + | chr8.2:18973248-18973267 | MS.gene60331:CDS | 45.0% |
| !! | TGTGGGTTTGAGTTGAGAGA+AGG | - | chr8.2:18972534-18972553 | None:intergenic | 45.0% |
| CAGAGTTGTGAGGCATGTGA+AGG | - | chr8.2:18972574-18972593 | None:intergenic | 50.0% | |
| GGGACAGAACAATCAAGGTG+TGG | + | chr8.2:18973030-18973049 | MS.gene60331:CDS | 50.0% | |
| TGAGAGAAGGAACTGATGCG+AGG | - | chr8.2:18972521-18972540 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGCAGTGGTTCTG+AGG | + | chr8.2:18973403-18973422 | MS.gene60331:CDS | 50.0% |
| !! | GTTTCCGATTTGGTGTGCAG+TGG | + | chr8.2:18973395-18973414 | MS.gene60331:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 18972432 | 18973637 | 18972432 | ID=MS.gene60331 |
| chr8.2 | mRNA | 18972432 | 18973637 | 18972432 | ID=MS.gene60331.t1;Parent=MS.gene60331 |
| chr8.2 | exon | 18972432 | 18973637 | 18972432 | ID=MS.gene60331.t1.exon1;Parent=MS.gene60331.t1 |
| chr8.2 | CDS | 18972432 | 18973637 | 18972432 | ID=cds.MS.gene60331.t1;Parent=MS.gene60331.t1 |
| Gene Sequence |
| Protein sequence |
