Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60582.t1 | XP_003591772.1 | 96.1 | 441 | 17 | 0 | 1 | 441 | 1 | 441 | 9.40E-233 | 815.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60582.t1 | Q5SR56 | 25.3 | 395 | 262 | 10 | 2 | 388 | 35 | 404 | 1.4e-22 | 109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60582.t1 | G7I365 | 96.1 | 441 | 17 | 0 | 1 | 441 | 1 | 441 | 6.8e-233 | 815.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051863 | MS.gene60582 | 0.814516 | 1.48E-51 | -1.69E-46 |
| MS.gene054706 | MS.gene60582 | 0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene60582 | -0.801274 | 9.73E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene60582 | 0.815312 | 9.86E-52 | -1.69E-46 |
| MS.gene060405 | MS.gene60582 | 0.809562 | 1.78E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60582.t1 | MTR_1g092880 | 96.145 | 441 | 17 | 0 | 1 | 441 | 1 | 441 | 0.0 | 862 |
| MS.gene60582.t1 | MTR_1g092880 | 97.073 | 410 | 12 | 0 | 1 | 410 | 1 | 410 | 0.0 | 807 |
| MS.gene60582.t1 | MTR_1g092870 | 86.425 | 442 | 59 | 1 | 1 | 441 | 1 | 442 | 0.0 | 783 |
| MS.gene60582.t1 | MTR_1g092880 | 97.403 | 385 | 10 | 0 | 1 | 385 | 1 | 385 | 0.0 | 757 |
| MS.gene60582.t1 | MTR_1g112980 | 36.534 | 427 | 261 | 3 | 10 | 428 | 4 | 428 | 9.38e-93 | 287 |
| MS.gene60582.t1 | MTR_3g114810 | 36.817 | 421 | 251 | 2 | 13 | 420 | 9 | 427 | 1.12e-91 | 284 |
| MS.gene60582.t1 | MTR_1g112980 | 36.313 | 358 | 218 | 3 | 10 | 359 | 4 | 359 | 1.47e-73 | 235 |
| MS.gene60582.t1 | MTR_1g112980 | 36.919 | 344 | 207 | 3 | 10 | 345 | 4 | 345 | 2.56e-71 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60582.t1 | AT5G42210 | 36.321 | 424 | 260 | 2 | 13 | 426 | 10 | 433 | 2.58e-90 | 281 |
| MS.gene60582.t1 | AT5G42210 | 35.770 | 383 | 236 | 2 | 13 | 385 | 10 | 392 | 1.21e-79 | 252 |
| MS.gene60582.t1 | AT2G16980 | 34.312 | 443 | 265 | 4 | 8 | 425 | 4 | 445 | 1.08e-77 | 249 |
| MS.gene60582.t1 | AT2G16980 | 34.312 | 443 | 265 | 4 | 8 | 425 | 19 | 460 | 1.22e-77 | 249 |
| MS.gene60582.t1 | AT2G16980 | 35.104 | 433 | 252 | 4 | 8 | 415 | 19 | 447 | 2.10e-76 | 246 |
| MS.gene60582.t1 | AT2G16970 | 32.594 | 451 | 278 | 4 | 8 | 432 | 4 | 454 | 4.43e-75 | 242 |
| MS.gene60582.t1 | AT2G16990 | 31.655 | 417 | 263 | 2 | 13 | 407 | 8 | 424 | 8.85e-69 | 225 |
| MS.gene60582.t1 | AT2G16980 | 33.416 | 404 | 244 | 3 | 8 | 386 | 19 | 422 | 3.87e-67 | 220 |
| MS.gene60582.t1 | AT2G16970 | 31.667 | 420 | 262 | 3 | 8 | 402 | 4 | 423 | 2.36e-66 | 219 |
| MS.gene60582.t1 | AT2G16990 | 31.463 | 410 | 259 | 2 | 13 | 400 | 8 | 417 | 5.82e-66 | 218 |
| MS.gene60582.t1 | AT2G16990 | 31.463 | 410 | 259 | 2 | 13 | 400 | 8 | 417 | 5.82e-66 | 218 |
| MS.gene60582.t1 | AT2G16970 | 32.178 | 404 | 249 | 3 | 8 | 386 | 4 | 407 | 2.36e-65 | 215 |
| MS.gene60582.t1 | AT2G16970 | 32.178 | 404 | 249 | 3 | 8 | 386 | 4 | 407 | 2.36e-65 | 215 |
| MS.gene60582.t1 | AT2G16980 | 31.250 | 432 | 244 | 4 | 8 | 386 | 19 | 450 | 9.75e-62 | 207 |
| MS.gene60582.t1 | AT2G16990 | 30.479 | 397 | 254 | 2 | 13 | 387 | 8 | 404 | 9.50e-61 | 203 |
| MS.gene60582.t1 | AT2G16990 | 30.479 | 397 | 254 | 2 | 13 | 387 | 8 | 404 | 9.50e-61 | 203 |
| MS.gene60582.t1 | AT2G16970 | 31.300 | 377 | 234 | 3 | 8 | 359 | 4 | 380 | 1.75e-56 | 191 |
| MS.gene60582.t1 | AT2G16990 | 30.488 | 410 | 236 | 3 | 13 | 400 | 8 | 390 | 5.33e-56 | 191 |
| MS.gene60582.t1 | AT2G16970 | 32.184 | 348 | 211 | 3 | 8 | 330 | 4 | 351 | 1.43e-54 | 186 |
| MS.gene60582.t1 | AT2G16970 | 32.184 | 348 | 211 | 3 | 8 | 330 | 4 | 351 | 1.83e-54 | 186 |
| MS.gene60582.t1 | AT2G16980 | 34.906 | 318 | 179 | 3 | 122 | 415 | 1 | 314 | 3.68e-47 | 166 |
| MS.gene60582.t1 | AT2G16990 | 28.994 | 338 | 218 | 2 | 13 | 328 | 8 | 345 | 2.10e-46 | 165 |
| MS.gene60582.t1 | AT2G16990 | 28.994 | 338 | 218 | 2 | 13 | 328 | 8 | 345 | 2.10e-46 | 165 |
| MS.gene60582.t1 | AT2G16970 | 37.430 | 179 | 111 | 1 | 255 | 432 | 169 | 347 | 4.85e-31 | 122 |
| MS.gene60582.t1 | AT2G16970 | 34.706 | 170 | 110 | 1 | 8 | 176 | 4 | 173 | 1.97e-27 | 112 |
Find 85 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTGTAGGCTTGGCTTTC+TGG | 0.046732 | 1.2:-69191201 | MS.gene60582:intron |
| TCCAAAGCCATTTACATTAA+TGG | 0.151907 | 1.2:-69193085 | MS.gene60582:CDS |
| TTGAAGACCATTAATGTAAA+TGG | 0.184689 | 1.2:+69193078 | None:intergenic |
| TCATTACTTGAAGGATTATT+AGG | 0.221635 | 1.2:+69189974 | None:intergenic |
| AACAAAAGGGCAGCAGTATT+TGG | 0.253401 | 1.2:-69192383 | MS.gene60582:CDS |
| GATGATGGTACTTCCAATAT+TGG | 0.263930 | 1.2:-69192949 | MS.gene60582:CDS |
| CCAAATGAGGCACTTAAATA+TGG | 0.298481 | 1.2:+69190875 | None:intergenic |
| GAAATTACCAAAAGGAAATA+TGG | 0.304389 | 1.2:+69192869 | None:intergenic |
| ACCATTAATGTAAATGGCTT+TGG | 0.317187 | 1.2:+69193084 | None:intergenic |
| TCTGAAAGCTGGCCCAATAT+TGG | 0.326045 | 1.2:+69192936 | None:intergenic |
| TCCACCACCATATTTCCTTT+TGG | 0.332298 | 1.2:-69192876 | MS.gene60582:intron |
| AGGAAGAAATGCATATAAAC+TGG | 0.364989 | 1.2:+69192144 | None:intergenic |
| CCTTCCAAGTCATTACTTGA+AGG | 0.370474 | 1.2:+69189965 | None:intergenic |
| TACTTCCACTAAGCATTCAT+TGG | 0.375771 | 1.2:-69193183 | MS.gene60582:CDS |
| TTGGTGTAGCTTTACTTGCT+TGG | 0.383852 | 1.2:-69192592 | MS.gene60582:intron |
| CCGCGGAAATAGTAATCTTC+AGG | 0.389670 | 1.2:-69192020 | MS.gene60582:intron |
| TTTCTGCTTCACATGTTGTT+GGG | 0.389841 | 1.2:-69192343 | MS.gene60582:CDS |
| CTTCTGATGATGGTCGGAAT+TGG | 0.392333 | 1.2:-69191634 | MS.gene60582:CDS |
| GCAGTATTTGGTTGGATCAC+TGG | 0.394856 | 1.2:-69192371 | MS.gene60582:CDS |
| CCATATTTAAGTGCCTCATT+TGG | 0.394933 | 1.2:-69190875 | MS.gene60582:CDS |
| TCCTCATAGATTTATATCTT+CGG | 0.396596 | 1.2:+69192046 | None:intergenic |
| TGGATTAGCATGGGCACCTT+GGG | 0.405021 | 1.2:-69191181 | MS.gene60582:intron |
| GGAAGTAACAAGTGGAATAA+TGG | 0.425167 | 1.2:+69193199 | None:intergenic |
| GCTAAAACCTTTGCATTCAA+AGG | 0.425492 | 1.2:+69190155 | None:intergenic |
| CAACACAGAAGACCCGCTTC+TGG | 0.427306 | 1.2:-69189942 | MS.gene60582:CDS |
| CTGGATTAGCATGGGCACCT+TGG | 0.432018 | 1.2:-69191182 | MS.gene60582:CDS |
| ATGATGGTACTTCCAATATT+GGG | 0.434227 | 1.2:-69192948 | MS.gene60582:CDS |
| GTCAAAGGACTCATTACAAT+TGG | 0.436941 | 1.2:+69190295 | None:intergenic |
| AATTGTGCGAAGCACGTAGT+AGG | 0.440369 | 1.2:+69192544 | None:intergenic |
| GCCTAACTCTTGGATATTTG+TGG | 0.444573 | 1.2:+69192098 | None:intergenic |
| AGCATCAAGCTCAACCAATC+AGG | 0.446005 | 1.2:-69190522 | MS.gene60582:intron |
| CCAATACTTAATCCATTGGT+TGG | 0.448307 | 1.2:-69191342 | MS.gene60582:CDS |
| GCAATCCAATGAATGCTTAG+TGG | 0.451192 | 1.2:+69193178 | None:intergenic |
| CCAACCAATGGATTAAGTAT+TGG | 0.453351 | 1.2:+69191342 | None:intergenic |
| ACTTCCAATACTTAATCCAT+TGG | 0.457054 | 1.2:-69191346 | MS.gene60582:CDS |
| ATGTTGTCAATGAAAACAAA+AGG | 0.465641 | 1.2:-69192397 | MS.gene60582:CDS |
| CCTAACTCTTGGATATTTGT+GGG | 0.469016 | 1.2:+69192099 | None:intergenic |
| ATATGCTATTGATGCAAGTA+AGG | 0.470324 | 1.2:+69191296 | None:intergenic |
| CTAAAACCTTTGCATTCAAA+GGG | 0.470696 | 1.2:+69190156 | None:intergenic |
| CTTGGCTTTCTGGATTAGCA+TGG | 0.472037 | 1.2:-69191191 | MS.gene60582:CDS |
| CCCACAAATATCCAAGAGTT+AGG | 0.475946 | 1.2:-69192099 | MS.gene60582:CDS |
| ACATGTTGTTGGGAACGTCT+TGG | 0.481757 | 1.2:-69192333 | MS.gene60582:CDS |
| TAGAGCAGAAGCCTAACTCT+TGG | 0.495111 | 1.2:+69192088 | None:intergenic |
| GTTCTCAGAACTTCTGATGA+TGG | 0.496970 | 1.2:-69191644 | MS.gene60582:CDS |
| TTGGCTTTCTGGATTAGCAT+GGG | 0.498516 | 1.2:-69191190 | MS.gene60582:CDS |
| CTGCATCTCTGTCGCGTATG+TGG | 0.504768 | 1.2:-69192492 | MS.gene60582:intron |
| AGGAAATATGGTGGTGGACA+TGG | 0.507063 | 1.2:+69192881 | None:intergenic |
| CAGTCCCACATTAAGAGGCA+TGG | 0.508067 | 1.2:-69191879 | MS.gene60582:CDS |
| AAAAGGACAACAAACCTGAT+TGG | 0.508525 | 1.2:+69190508 | None:intergenic |
| AAAGGGCAGCAGTATTTGGT+TGG | 0.512553 | 1.2:-69192379 | MS.gene60582:CDS |
| AATAGCCATGCCTCTTAATG+TGG | 0.525630 | 1.2:+69191874 | None:intergenic |
| ATCACTTTCTCTCCAACCAA+TGG | 0.535617 | 1.2:+69191330 | None:intergenic |
| GGCCATGTTCATCTGAAAGC+TGG | 0.540075 | 1.2:+69192925 | None:intergenic |
| GACATAGATAATGCCAAATG+AGG | 0.541816 | 1.2:+69190862 | None:intergenic |
| TAATCCTTCAAGTAATGACT+TGG | 0.544753 | 1.2:-69189969 | MS.gene60582:CDS |
| ATTTCGTATATAATCAGTAA+AGG | 0.551876 | 1.2:-69192524 | MS.gene60582:CDS |
| TAACAAGGAGTAAAGGTTTG+CGG | 0.552850 | 1.2:+69192904 | None:intergenic |
| TGTTGTCAATGAAAACAAAA+GGG | 0.564808 | 1.2:-69192396 | MS.gene60582:CDS |
| ATCAGCTATGATCCAGAAGC+GGG | 0.566398 | 1.2:+69189930 | None:intergenic |
| GACATGGTAACAAGGAGTAA+AGG | 0.569010 | 1.2:+69192897 | None:intergenic |
| AGAACCATGTCGTGGTGGAG+TGG | 0.569202 | 1.2:-69193238 | None:intergenic |
| TTGAAAACATACCAGCAAAA+CGG | 0.572492 | 1.2:+69191811 | None:intergenic |
| GCCGAAGATATAAATCTATG+AGG | 0.575578 | 1.2:-69192047 | MS.gene60582:CDS |
| TTGGAGCAAGATGATTGTTG+AGG | 0.583697 | 1.2:+69193103 | None:intergenic |
| CCTTCAAGTAATGACTTGGA+AGG | 0.586962 | 1.2:-69189965 | MS.gene60582:CDS |
| TCAGAACTTCTGATGATGGT+CGG | 0.592201 | 1.2:-69191640 | MS.gene60582:CDS |
| ACTTGCTTGGAATCAATCTG+AGG | 0.592218 | 1.2:-69192579 | MS.gene60582:CDS |
| GATGCTCCCTTTGAATGCAA+AGG | 0.600708 | 1.2:-69190162 | MS.gene60582:CDS |
| ACCAAAAGGAAATATGGTGG+TGG | 0.601761 | 1.2:+69192875 | None:intergenic |
| GTATTGCACTCACAAGTCAA+AGG | 0.602247 | 1.2:+69190280 | None:intergenic |
| TGCTTAGTGGAAGTAACAAG+TGG | 0.613388 | 1.2:+69193191 | None:intergenic |
| TGGTGGTGGACATGGTAACA+AGG | 0.613830 | 1.2:+69192889 | None:intergenic |
| TACTCACAGCTGGTTTCACA+AGG | 0.613962 | 1.2:+69190840 | None:intergenic |
| TATATGTGCATCTGTATGCA+TGG | 0.633250 | 1.2:-69190130 | MS.gene60582:intron |
| CCTGAAGATTACTATTTCCG+CGG | 0.635434 | 1.2:+69192020 | None:intergenic |
| ATAGCCATGCCTCTTAATGT+GGG | 0.636523 | 1.2:+69191875 | None:intergenic |
| GGCCAGCTTTCAGATGAACA+TGG | 0.640180 | 1.2:-69192927 | MS.gene60582:CDS |
| ATCTCAGAACCATGTCGTGG+TGG | 0.645426 | 1.2:-69193243 | None:intergenic |
| GAATCCACTCCACCACGACA+TGG | 0.648232 | 1.2:+69193234 | None:intergenic |
| ATTACCAAAAGGAAATATGG+TGG | 0.656790 | 1.2:+69192872 | None:intergenic |
| AATCAGCTATGATCCAGAAG+CGG | 0.664685 | 1.2:+69189929 | None:intergenic |
| ATCATCTCAGAACCATGTCG+TGG | 0.673274 | 1.2:-69193246 | None:intergenic |
| TAAATCTATGAGGAATGCCG+CGG | 0.674285 | 1.2:-69192037 | MS.gene60582:CDS |
| AAAACATACCAGCAAAACGG+TGG | 0.718416 | 1.2:+69191814 | None:intergenic |
| TTGTTGAGGACATAAAGCAG+TGG | 0.744421 | 1.2:+69193117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAAATTAATGTAAAA+TGG | + | chr1.2:69192930-69192949 | None:intergenic | 10.0% |
| !! | TGAAAAACATTATATTATTT+AGG | + | chr1.2:69191266-69191285 | None:intergenic | 10.0% |
| !!! | TTTTTCTTAATCTAATATAT+TGG | - | chr1.2:69190319-69190338 | MS.gene60582:CDS | 10.0% |
| !! | AGAATATAATACAAAAAAAG+TGG | + | chr1.2:69192432-69192451 | None:intergenic | 15.0% |
| !!! | TTTAAAATCAAACATATGAT+TGG | + | chr1.2:69190418-69190437 | None:intergenic | 15.0% |
| !! | AATAGTTACAATCATTAGTT+TGG | + | chr1.2:69191611-69191630 | None:intergenic | 20.0% |
| !! | ACTTGAATAAGAAGTTATAA+CGG | - | chr1.2:69192119-69192138 | MS.gene60582:CDS | 20.0% |
| !! | ATTTCGTATATAATCAGTAA+AGG | - | chr1.2:69190639-69190658 | MS.gene60582:intron | 20.0% |
| !! | CATATGATACATTGTTAATT+TGG | + | chr1.2:69192754-69192773 | None:intergenic | 20.0% |
| !! | GAAAAATTGAAATTACCAAA+AGG | + | chr1.2:69190305-69190324 | None:intergenic | 20.0% |
| !! | TACAAATTTACATGCTTATA+TGG | - | chr1.2:69192196-69192215 | MS.gene60582:intron | 20.0% |
| !!! | ATTTAATTTGTATGCACTAT+CGG | + | chr1.2:69192522-69192541 | None:intergenic | 20.0% |
| !!! | TTCATAATATATTTTGGTGT+AGG | - | chr1.2:69191949-69191968 | MS.gene60582:intron | 20.0% |
| !!! | TTTTGTGATTCTTCTTTATA+AGG | - | chr1.2:69191656-69191675 | MS.gene60582:CDS | 20.0% |
| ! | AATTATAGCTTACTTGTTTC+AGG | - | chr1.2:69190970-69190989 | MS.gene60582:intron | 25.0% |
| ! | ATGTTGTCAATGAAAACAAA+AGG | - | chr1.2:69190766-69190785 | MS.gene60582:intron | 25.0% |
| ! | CTTGAATAAGAAGTTATAAC+GGG | - | chr1.2:69192120-69192139 | MS.gene60582:CDS | 25.0% |
| ! | GAAATTACCAAAAGGAAATA+TGG | + | chr1.2:69190297-69190316 | None:intergenic | 25.0% |
| ! | GAGAAATTAATTGCAATATC+AGG | + | chr1.2:69192592-69192611 | None:intergenic | 25.0% |
| ! | GTTGAGGAATTCAATTAAAT+CGG | + | chr1.2:69191378-69191397 | None:intergenic | 25.0% |
| ! | TAAATAGTAGTAACACAACA+AGG | + | chr1.2:69191407-69191426 | None:intergenic | 25.0% |
| ! | TCATTACTTGAAGGATTATT+AGG | + | chr1.2:69193192-69193211 | None:intergenic | 25.0% |
| ! | TCCTCATAGATTTATATCTT+CGG | + | chr1.2:69191120-69191139 | None:intergenic | 25.0% |
| ! | TGTTGTCAATGAAAACAAAA+GGG | - | chr1.2:69190767-69190786 | MS.gene60582:intron | 25.0% |
| ! | TTGAAGACCATTAATGTAAA+TGG | + | chr1.2:69190088-69190107 | None:intergenic | 25.0% |
| !! | ATACATTGTTAATTTGGTGA+GGG | + | chr1.2:69192748-69192767 | None:intergenic | 25.0% |
| !! | GCTCTCTTCATAATATATTT+TGG | - | chr1.2:69191943-69191962 | MS.gene60582:intron | 25.0% |
| !! | TTATCAATTTTACTTACCCA+AGG | + | chr1.2:69192001-69192020 | None:intergenic | 25.0% |
| !! | TTTGCTTTCTCTGAATTTTA+TGG | - | chr1.2:69192775-69192794 | MS.gene60582:intron | 25.0% |
| !!! | TACTATTTGAAAGCTGTTTT+TGG | - | chr1.2:69191481-69191500 | MS.gene60582:intron | 25.0% |
| AAAAGCTTACTGTGTAATAC+AGG | + | chr1.2:69192092-69192111 | None:intergenic | 30.0% | |
| ACCATTAATGTAAATGGCTT+TGG | + | chr1.2:69190082-69190101 | None:intergenic | 30.0% | |
| ACTTCCAATACTTAATCCAT+TGG | - | chr1.2:69191817-69191836 | MS.gene60582:intron | 30.0% | |
| ACTTCTGTAGTTACAATCAA+TGG | - | chr1.2:69192558-69192577 | MS.gene60582:CDS | 30.0% | |
| AGAAGAGATAAACAACTAGA+GGG | + | chr1.2:69193108-69193127 | None:intergenic | 30.0% | |
| AGGAAGAAATGCATATAAAC+TGG | + | chr1.2:69191022-69191041 | None:intergenic | 30.0% | |
| ATATGCTATTGATGCAAGTA+AGG | + | chr1.2:69191870-69191889 | None:intergenic | 30.0% | |
| ATGATGGTACTTCCAATATT+GGG | - | chr1.2:69190215-69190234 | MS.gene60582:intron | 30.0% | |
| ATTACCAAAAGGAAATATGG+TGG | + | chr1.2:69190294-69190313 | None:intergenic | 30.0% | |
| ATTGATTGTAACTACAGAAG+TGG | + | chr1.2:69192559-69192578 | None:intergenic | 30.0% | |
| CTAAAACCTTTGCATTCAAA+GGG | + | chr1.2:69193010-69193029 | None:intergenic | 30.0% | |
| GAGAGCTTAGATATGATATT+AGG | + | chr1.2:69191929-69191948 | None:intergenic | 30.0% | |
| GAGTAATAAGTAGGTCAAAA+AGG | + | chr1.2:69192675-69192694 | None:intergenic | 30.0% | |
| GATCTCACAATGTAGATATT+TGG | + | chr1.2:69192468-69192487 | None:intergenic | 30.0% | |
| GTAGAGTAGATGAAAGAAAA+TGG | + | chr1.2:69193086-69193105 | None:intergenic | 30.0% | |
| TAATCCTTCAAGTAATGACT+TGG | - | chr1.2:69193194-69193213 | MS.gene60582:CDS | 30.0% | |
| TAGAAGAGATAAACAACTAG+AGG | + | chr1.2:69193109-69193128 | None:intergenic | 30.0% | |
| TATAGCTGTTGAGTTTAATC+TGG | - | chr1.2:69191708-69191727 | MS.gene60582:intron | 30.0% | |
| TATGGTGTAACTTGATTGTA+GGG | - | chr1.2:69192793-69192812 | MS.gene60582:intron | 30.0% | |
| TCAACAAGAATACAGTGAAA+AGG | + | chr1.2:69190551-69190570 | None:intergenic | 30.0% | |
| TCCAAAGCCATTTACATTAA+TGG | - | chr1.2:69190078-69190097 | MS.gene60582:intron | 30.0% | |
| TTATGGTGTAACTTGATTGT+AGG | - | chr1.2:69192792-69192811 | MS.gene60582:intron | 30.0% | |
| TTCACTGTATTCTTGTTGAT+TGG | - | chr1.2:69190552-69190571 | MS.gene60582:intron | 30.0% | |
| TTGAAAACATACCAGCAAAA+CGG | + | chr1.2:69191355-69191374 | None:intergenic | 30.0% | |
| ! | AAAGCACAAACTTTTATTGC+TGG | - | chr1.2:69192817-69192836 | MS.gene60582:intron | 30.0% |
| ! | AAGCACAAACTTTTATTGCT+GGG | - | chr1.2:69192818-69192837 | MS.gene60582:intron | 30.0% |
| ! | AGTTACAATCATTAGTTTGG+AGG | + | chr1.2:69191608-69191627 | None:intergenic | 30.0% |
| ! | CTACTTGCTTGTATAGATTT+TGG | + | chr1.2:69192700-69192719 | None:intergenic | 30.0% |
| ! | GATACATTGTTAATTTGGTG+AGG | + | chr1.2:69192749-69192768 | None:intergenic | 30.0% |
| ! | GTCTCTTTCTTTTATGAGTT+GGG | - | chr1.2:69191312-69191331 | MS.gene60582:CDS | 30.0% |
| ! | GTTACAATCATTAGTTTGGA+GGG | + | chr1.2:69191607-69191626 | None:intergenic | 30.0% |
| ! | TCCTCAAAACTACATTTTTG+TGG | - | chr1.2:69190863-69190882 | MS.gene60582:CDS | 30.0% |
| ! | TGTCTCTTTCTTTTATGAGT+TGG | - | chr1.2:69191311-69191330 | MS.gene60582:CDS | 30.0% |
| !! | AATTGGTTCAATCTTTTCAC+AGG | - | chr1.2:69191546-69191565 | MS.gene60582:intron | 30.0% |
| !! | ACCACAAAAATGTAGTTTTG+AGG | + | chr1.2:69190867-69190886 | None:intergenic | 30.0% |
| !! | ATTTTGGAGGAGTAATAAGT+AGG | + | chr1.2:69192684-69192703 | None:intergenic | 30.0% |
| !!! | AATATATTTTGGTGTAGGCT+TGG | - | chr1.2:69191954-69191973 | MS.gene60582:intron | 30.0% |
| !!! | ACTTTTTCAGATGATTTCTC+TGG | - | chr1.2:69193146-69193165 | MS.gene60582:CDS | 30.0% |
| !!! | CTAGTTTTACAGTTTCAACT+AGG | + | chr1.2:69191042-69191061 | None:intergenic | 30.0% |
| AAAAGGACAACAAACCTGAT+TGG | + | chr1.2:69192658-69192677 | None:intergenic | 35.0% | |
| ACAGGTATAATGATTCTCAG+AGG | - | chr1.2:69191564-69191583 | MS.gene60582:intron | 35.0% | |
| ATACAAAAAAAGTGGCATCG+TGG | + | chr1.2:69192424-69192443 | None:intergenic | 35.0% | |
| CACAACAAGGAAAAAAGTTG+AGG | + | chr1.2:69191394-69191413 | None:intergenic | 35.0% | |
| CCAATACTTAATCCATTGGT+TGG | - | chr1.2:69191821-69191840 | MS.gene60582:intron | 35.0% | |
| CCATATTTAAGTGCCTCATT+TGG | - | chr1.2:69192288-69192307 | MS.gene60582:intron | 35.0% | |
| CCTAACTCTTGGATATTTGT+GGG | + | chr1.2:69191067-69191086 | None:intergenic | 35.0% | |
| GAAAATTCCAGCAATCTAGA+AGG | + | chr1.2:69190192-69190211 | None:intergenic | 35.0% | |
| GACATAGATAATGCCAAATG+AGG | + | chr1.2:69192304-69192323 | None:intergenic | 35.0% | |
| GCCGAAGATATAAATCTATG+AGG | - | chr1.2:69191116-69191135 | MS.gene60582:intron | 35.0% | |
| GCTAAAACCTTTGCATTCAA+AGG | + | chr1.2:69193011-69193030 | None:intergenic | 35.0% | |
| GGAAGTAACAAGTGGAATAA+TGG | + | chr1.2:69189967-69189986 | None:intergenic | 35.0% | |
| GTATTGGAAGTAACACAATC+TGG | + | chr1.2:69191808-69191827 | None:intergenic | 35.0% | |
| GTCAAAGGACTCATTACAAT+TGG | + | chr1.2:69192871-69192890 | None:intergenic | 35.0% | |
| TAACAAGGAGTAAAGGTTTG+CGG | + | chr1.2:69190262-69190281 | None:intergenic | 35.0% | |
| TAATTGCAATATCAGGAGAC+AGG | + | chr1.2:69192585-69192604 | None:intergenic | 35.0% | |
| TACTTCCACTAAGCATTCAT+TGG | - | chr1.2:69189980-69189999 | MS.gene60582:CDS | 35.0% | |
| TATATGTGCATCTGTATGCA+TGG | - | chr1.2:69193033-69193052 | MS.gene60582:intron | 35.0% | |
| TGAGTTTCATTCATCAATGC+AGG | - | chr1.2:69192263-69192282 | MS.gene60582:intron | 35.0% | |
| TGATATATCTTTCCTCTGTC+AGG | - | chr1.2:69190740-69190759 | MS.gene60582:intron | 35.0% | |
| TTCGATGCACGTCTAAAAAA+AGG | + | chr1.2:69192391-69192410 | None:intergenic | 35.0% | |
| TTGTAACAGTACATGATGCA+AGG | + | chr1.2:69192168-69192187 | None:intergenic | 35.0% | |
| TTTCTGCTTCACATGTTGTT+GGG | - | chr1.2:69190820-69190839 | MS.gene60582:intron | 35.0% | |
| ! | AGCACAAACTTTTATTGCTG+GGG | - | chr1.2:69192819-69192838 | MS.gene60582:intron | 35.0% |
| ! | CCAAATGAGGCACTTAAATA+TGG | + | chr1.2:69192291-69192310 | None:intergenic | 35.0% |
| ! | CTTGCTTGTATAGATTTTGG+AGG | + | chr1.2:69192697-69192716 | None:intergenic | 35.0% |
| ! | GATGATGGTACTTCCAATAT+TGG | - | chr1.2:69190214-69190233 | MS.gene60582:intron | 35.0% |
| ! | GTCTAATGAGAAGTTAGCTT+TGG | + | chr1.2:69192908-69192927 | None:intergenic | 35.0% |
| ! | TTTTCTGCTTCACATGTTGT+TGG | - | chr1.2:69190819-69190838 | MS.gene60582:intron | 35.0% |
| !! | CCAACCAATGGATTAAGTAT+TGG | + | chr1.2:69191824-69191843 | None:intergenic | 35.0% |
| !! | TGCTGGAATTTTCAAGATGA+TGG | - | chr1.2:69190199-69190218 | MS.gene60582:intron | 35.0% |
| !! | TTTTATGAGTTGGGAATGTC+TGG | - | chr1.2:69191321-69191340 | MS.gene60582:CDS | 35.0% |
| !! | TTTTTCAGTCCCACATTAAG+AGG | - | chr1.2:69191279-69191298 | MS.gene60582:intron | 35.0% |
| !!! | CTTTTTTCCTTCTAGATTGC+TGG | - | chr1.2:69190182-69190201 | MS.gene60582:CDS | 35.0% |
| AAAACATACCAGCAAAACGG+TGG | + | chr1.2:69191352-69191371 | None:intergenic | 40.0% | |
| AACAAAAGGGCAGCAGTATT+TGG | - | chr1.2:69190780-69190799 | MS.gene60582:intron | 40.0% | |
| AATAGCCATGCCTCTTAATG+TGG | + | chr1.2:69191292-69191311 | None:intergenic | 40.0% | |
| ACAATCTGGAAGAAGTTGAC+AGG | + | chr1.2:69191794-69191813 | None:intergenic | 40.0% | |
| ACCAAAAGGAAATATGGTGG+TGG | + | chr1.2:69190291-69190310 | None:intergenic | 40.0% | |
| ACTTGCTTGGAATCAATCTG+AGG | - | chr1.2:69190584-69190603 | MS.gene60582:intron | 40.0% | |
| ATAGCCATGCCTCTTAATGT+GGG | + | chr1.2:69191291-69191310 | None:intergenic | 40.0% | |
| ATCACATATCTACTCACAGC+TGG | + | chr1.2:69192336-69192355 | None:intergenic | 40.0% | |
| ATCACTTTCTCTCCAACCAA+TGG | + | chr1.2:69191836-69191855 | None:intergenic | 40.0% | |
| CAATGTAGATATTTGGCGAG+AGG | + | chr1.2:69192461-69192480 | None:intergenic | 40.0% | |
| CCCACAAATATCCAAGAGTT+AGG | - | chr1.2:69191064-69191083 | MS.gene60582:intron | 40.0% | |
| CCTGAAGATTACTATTTCCG+CGG | + | chr1.2:69191146-69191165 | None:intergenic | 40.0% | |
| CCTTCCAAGTCATTACTTGA+AGG | + | chr1.2:69193201-69193220 | None:intergenic | 40.0% | |
| GACATGGTAACAAGGAGTAA+AGG | + | chr1.2:69190269-69190288 | None:intergenic | 40.0% | |
| GCAATCCAATGAATGCTTAG+TGG | + | chr1.2:69189988-69190007 | None:intergenic | 40.0% | |
| GCCTAACTCTTGGATATTTG+TGG | + | chr1.2:69191068-69191087 | None:intergenic | 40.0% | |
| GTATTGCACTCACAAGTCAA+AGG | + | chr1.2:69192886-69192905 | None:intergenic | 40.0% | |
| GTTATGAGACTGTCAAGCTA+TGG | + | chr1.2:69191451-69191470 | None:intergenic | 40.0% | |
| GTTCTCAGAACTTCTGATGA+TGG | - | chr1.2:69191519-69191538 | MS.gene60582:intron | 40.0% | |
| TAAATCTATGAGGAATGCCG+CGG | - | chr1.2:69191126-69191145 | MS.gene60582:intron | 40.0% | |
| TGCTTAGTGGAAGTAACAAG+TGG | + | chr1.2:69189975-69189994 | None:intergenic | 40.0% | |
| TTGGAGCAAGATGATTGTTG+AGG | + | chr1.2:69190063-69190082 | None:intergenic | 40.0% | |
| TTGTTGAGGACATAAAGCAG+TGG | + | chr1.2:69190049-69190068 | None:intergenic | 40.0% | |
| ! | CATTAGTTTGGAGGGATCAA+AGG | + | chr1.2:69191599-69191618 | None:intergenic | 40.0% |
| ! | CCTTCAAGTAATGACTTGGA+AGG | - | chr1.2:69193198-69193217 | MS.gene60582:CDS | 40.0% |
| ! | TCCACCACCATATTTCCTTT+TGG | - | chr1.2:69190287-69190306 | MS.gene60582:intron | 40.0% |
| ! | TTGGTGTAGCTTTACTTGCT+TGG | - | chr1.2:69190571-69190590 | MS.gene60582:intron | 40.0% |
| !! | TCAGAACTTCTGATGATGGT+CGG | - | chr1.2:69191523-69191542 | MS.gene60582:intron | 40.0% |
| !! | TTGGCTTTCTGGATTAGCAT+GGG | - | chr1.2:69191973-69191992 | MS.gene60582:intron | 40.0% |
| AAAGGGCAGCAGTATTTGGT+TGG | - | chr1.2:69190784-69190803 | MS.gene60582:intron | 45.0% | |
| AATTGTGCGAAGCACGTAGT+AGG | + | chr1.2:69190622-69190641 | None:intergenic | 45.0% | |
| ACATGTTGTTGGGAACGTCT+TGG | - | chr1.2:69190830-69190849 | MS.gene60582:intron | 45.0% | |
| AGCATCAAGCTCAACCAATC+AGG | - | chr1.2:69192641-69192660 | MS.gene60582:intron | 45.0% | |
| CCGCGGAAATAGTAATCTTC+AGG | - | chr1.2:69191143-69191162 | MS.gene60582:intron | 45.0% | |
| GATGCTCCCTTTGAATGCAA+AGG | - | chr1.2:69193001-69193020 | MS.gene60582:intron | 45.0% | |
| GCAGTATTTGGTTGGATCAC+TGG | - | chr1.2:69190792-69190811 | MS.gene60582:intron | 45.0% | |
| TAGAGCAGAAGCCTAACTCT+TGG | + | chr1.2:69191078-69191097 | None:intergenic | 45.0% | |
| TCTGAAAGCTGGCCCAATAT+TGG | + | chr1.2:69190230-69190249 | None:intergenic | 45.0% | |
| ! | TACTCACAGCTGGTTTCACA+AGG | + | chr1.2:69192326-69192345 | None:intergenic | 45.0% |
| ! | TGGTATAACCACCGTTTTGC+TGG | - | chr1.2:69191341-69191360 | MS.gene60582:CDS | 45.0% |
| !! | AGGAAATATGGTGGTGGACA+TGG | + | chr1.2:69190285-69190304 | None:intergenic | 45.0% |
| !! | CTTCTGATGATGGTCGGAAT+TGG | - | chr1.2:69191529-69191548 | MS.gene60582:intron | 45.0% |
| !! | CTTGGCTTTCTGGATTAGCA+TGG | - | chr1.2:69191972-69191991 | MS.gene60582:intron | 45.0% |
| CAGTCCCACATTAAGAGGCA+TGG | - | chr1.2:69191284-69191303 | MS.gene60582:intron | 50.0% | |
| GGCCAGCTTTCAGATGAACA+TGG | - | chr1.2:69190236-69190255 | MS.gene60582:intron | 50.0% | |
| GGCCATGTTCATCTGAAAGC+TGG | + | chr1.2:69190241-69190260 | None:intergenic | 50.0% | |
| TGACAACATCTGCCTGACAG+AGG | + | chr1.2:69190755-69190774 | None:intergenic | 50.0% | |
| ! | TTGGTGTAGGCTTGGCTTTC+TGG | - | chr1.2:69191962-69191981 | MS.gene60582:intron | 50.0% |
| !! | TGGATTAGCATGGGCACCTT+GGG | - | chr1.2:69191982-69192001 | MS.gene60582:intron | 50.0% |
| !! | TGGTGGTGGACATGGTAACA+AGG | + | chr1.2:69190277-69190296 | None:intergenic | 50.0% |
| CAACACAGAAGACCCGCTTC+TGG | - | chr1.2:69193221-69193240 | MS.gene60582:CDS | 55.0% | |
| CTGCATCTCTGTCGCGTATG+TGG | - | chr1.2:69190671-69190690 | MS.gene60582:intron | 55.0% | |
| !! | CTGGATTAGCATGGGCACCT+TGG | - | chr1.2:69191981-69192000 | MS.gene60582:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 69189931 | 69193254 | 69189931 | ID=MS.gene60582 |
| chr1.2 | mRNA | 69189931 | 69193254 | 69189931 | ID=MS.gene60582.t1;Parent=MS.gene60582 |
| chr1.2 | exon | 69193072 | 69193254 | 69193072 | ID=MS.gene60582.t1.exon1;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69193072 | 69193254 | 69193072 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69192877 | 69192988 | 69192877 | ID=MS.gene60582.t1.exon2;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69192877 | 69192988 | 69192877 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69192493 | 69192605 | 69192493 | ID=MS.gene60582.t1.exon3;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69192493 | 69192605 | 69192493 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69192301 | 69192423 | 69192301 | ID=MS.gene60582.t1.exon4;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69192301 | 69192423 | 69192301 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69192021 | 69192193 | 69192021 | ID=MS.gene60582.t1.exon5;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69192021 | 69192193 | 69192021 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69191823 | 69191898 | 69191823 | ID=MS.gene60582.t1.exon6;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69191823 | 69191898 | 69191823 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69191618 | 69191704 | 69191618 | ID=MS.gene60582.t1.exon7;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69191618 | 69191704 | 69191618 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69191296 | 69191376 | 69191296 | ID=MS.gene60582.t1.exon8;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69191296 | 69191376 | 69191296 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69191182 | 69191214 | 69191182 | ID=MS.gene60582.t1.exon9;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69191182 | 69191214 | 69191182 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69190847 | 69190900 | 69190847 | ID=MS.gene60582.t1.exon10;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69190847 | 69190900 | 69190847 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69190523 | 69190564 | 69190523 | ID=MS.gene60582.t1.exon11;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69190523 | 69190564 | 69190523 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69190293 | 69190371 | 69190293 | ID=MS.gene60582.t1.exon12;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69190293 | 69190371 | 69190293 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69190131 | 69190201 | 69190131 | ID=MS.gene60582.t1.exon13;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69190131 | 69190201 | 69190131 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| chr1.2 | exon | 69189931 | 69190029 | 69189931 | ID=MS.gene60582.t1.exon14;Parent=MS.gene60582.t1 |
| chr1.2 | CDS | 69189931 | 69190029 | 69189931 | ID=cds.MS.gene60582.t1;Parent=MS.gene60582.t1 |
| Gene Sequence |
| Protein sequence |
