AlfalfaGEDB | MS.gene60757

M. sativa cultivar XinJiangDaYe / MS.gene60757

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60757.t1	XP_013469571.1	98.1	571	11	0	1	571	1	571	0.00E+00	1136.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60757.t1	Q9XIC5	42.8	593	268	17	4	567	1	551	2.1e-108	394.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60757.t1	A0A072VNK6	98.1	571	11	0	1	571	1	571	0.0e+00	1136.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene60757.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053879	MS.gene60757	0.806149	9.46E-50	-1.69E-46
MS.gene054892	MS.gene60757	0.816599	5.09E-52	-1.69E-46
MS.gene054893	MS.gene60757	0.81533	9.77E-52	-1.69E-46
MS.gene055150	MS.gene60757	0.836225	1.06E-56	-1.69E-46
MS.gene055886	MS.gene60757	0.813013	3.17E-51	-1.69E-46
MS.gene057622	MS.gene60757	0.801079	1.07E-48	-1.69E-46
MS.gene058095	MS.gene60757	0.80961	1.74E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60757.t1	MTR_1g097300	98.074	571	11	0	1	571	1	571	0.0	1174
MS.gene60757.t1	MTR_1g097300	97.448	431	11	0	141	571	1	431	0.0	873
MS.gene60757.t1	MTR_3g096140	52.261	199	90	1	13	211	1	194	1.04e-69	226
MS.gene60757.t1	MTR_3g096140	52.261	199	90	1	13	211	1	194	1.08e-68	226
MS.gene60757.t1	MTR_8g063550	56.000	175	77	0	20	194	7	181	2.12e-67	222
MS.gene60757.t1	MTR_8g063550	56.000	175	77	0	20	194	7	181	4.69e-67	224
MS.gene60757.t1	MTR_8g063550	56.000	175	77	0	20	194	7	181	7.28e-67	224
MS.gene60757.t1	MTR_8g093580	54.857	175	79	0	20	194	7	181	3.33e-65	221
MS.gene60757.t1	MTR_6g477900	59.006	161	66	0	21	181	8	168	1.18e-60	201
MS.gene60757.t1	MTR_5g076850	61.728	162	61	1	21	181	8	169	1.38e-60	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60757.t1	AT1G34190	43.121	596	266	19	4	569	1	553	5.39e-139	415
MS.gene60757.t1	AT1G34180	41.356	590	286	19	6	567	3	560	6.17e-125	379
MS.gene60757.t1	AT1G34180	40.532	602	286	20	6	567	3	572	1.65e-121	370
MS.gene60757.t1	AT1G34180	47.354	378	161	10	6	370	3	355	3.86e-99	308
MS.gene60757.t1	AT1G34180	45.897	390	161	11	6	370	3	367	1.54e-95	299
MS.gene60757.t1	AT1G32870	37.478	563	286	15	21	567	12	524	2.70e-85	275
MS.gene60757.t1	AT1G32870	37.478	563	286	15	21	567	48	560	9.35e-85	275
MS.gene60757.t1	AT5G09330	41.791	335	173	8	21	339	8	336	1.59e-72	240
MS.gene60757.t1	AT5G09330	41.791	335	173	8	21	339	8	336	1.59e-72	240
MS.gene60757.t1	AT5G09330	41.791	335	173	8	21	339	8	336	1.59e-72	240

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Find 126 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAACATCTCTGCATCT+TGG	0.490156	1.2:-71561968	None:intergenic
AAATTGATGAAATCATTAAA+GGG	0.472368	1.2:+71561171	MS.gene60757:CDS
AACAAAGGCCCACAGAGCTG+AGG	0.632369	1.2:-71562602	None:intergenic
AACACCCGCAGTCCAGCTGA+AGG	0.628590	1.2:+71562140	MS.gene60757:CDS
AACATCTCTGCATCTTGGTA+AGG	0.509554	1.2:-71561963	None:intergenic
AAGGTAATACCTTAACATCA+CGG	0.661498	1.2:-71560835	None:intergenic
ACAGTTTGATTTGCGTCTTC+TGG	0.203030	1.2:-71562089	None:intergenic
ACATGTTGCTGGTCAAGGAC+AGG	0.530141	1.2:-71561209	None:intergenic
ACATTGTCAACAGCAGCCTC+TGG	0.508902	1.2:-71561110	None:intergenic
ACCATTTAAAGAAGAAGAAT+GGG	0.480249	1.2:+71561037	MS.gene60757:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAATACCTTAACATCA+CGG	-	chr1.2:71560838-71560857	None:intergenic	30.0%
ACAAAATGACAATCACCAAT+CGG	-	chr1.2:71559759-71559778	None:intergenic	30.0%
ACCAATCGGAAAAACATAAA+AGG	-	chr1.2:71559745-71559764	None:intergenic	30.0%
ATCTGAAAAGGAAGATTTGT+GGG	+	chr1.2:71559618-71559637	MS.gene60757:CDS	30.0%
CACATAAAGCAATAAGAATC+GGG	-	chr1.2:71562810-71562829	None:intergenic	30.0%
CACCATTTAAAGAAGAAGAA+TGG	+	chr1.2:71561036-71561055	MS.gene60757:CDS	30.0%
GAGATCAAAACTACAAAAAC+AGG	-	chr1.2:71561394-71561413	None:intergenic	30.0%
GCACATAAAGCAATAAGAAT+CGG	-	chr1.2:71562811-71562830	None:intergenic	30.0%
TAATGTAAATTCAGTTGACC+GGG	+	chr1.2:71561082-71561101	MS.gene60757:CDS	30.0%
TATCTGAAAAGGAAGATTTG+TGG	+	chr1.2:71559617-71559636	MS.gene60757:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	71559512	71562888	71559512	ID=MS.gene60757
chr1.2	mRNA	71559512	71562888	71559512	ID=MS.gene60757.t1;Parent=MS.gene60757
chr1.2	exon	71559512	71559707	71559512	ID=MS.gene60757.t1.exon1;Parent=MS.gene60757.t1
chr1.2	CDS	71559512	71559707	71559512	ID=cds.MS.gene60757.t1;Parent=MS.gene60757.t1
chr1.2	exon	71560570	71560847	71560570	ID=MS.gene60757.t1.exon2;Parent=MS.gene60757.t1
chr1.2	CDS	71560570	71560847	71560570	ID=cds.MS.gene60757.t1;Parent=MS.gene60757.t1
chr1.2	exon	71560966	71561256	71560966	ID=MS.gene60757.t1.exon3;Parent=MS.gene60757.t1
chr1.2	CDS	71560966	71561256	71560966	ID=cds.MS.gene60757.t1;Parent=MS.gene60757.t1
chr1.2	exon	71561618	71562194	71561618	ID=MS.gene60757.t1.exon4;Parent=MS.gene60757.t1
chr1.2	CDS	71561618	71562194	71561618	ID=cds.MS.gene60757.t1;Parent=MS.gene60757.t1
chr1.2	exon	71562515	71562888	71562515	ID=MS.gene60757.t1.exon5;Parent=MS.gene60757.t1
chr1.2	CDS	71562515	71562888	71562515	ID=cds.MS.gene60757.t1;Parent=MS.gene60757.t1

Gene Sequence

>MS.gene60757

ATGGGTGCGGTTTCGGAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATGTCGTCGATGCCAGGTTTTCGCTTTCATCCAACAGATGAGGAGTTGGTGATGTATTATCTGAAAAGGAAGATTTGTGGGAAGAAGTTGAAGTTCAACGTTATCAAGGAAACTGATGTGTACAAGTGGGATCCTGAGGATTTACCTGGTATTTGATTTTGCTCTTCACTCTTATTTCAGTACCTTTTATGTTTTTCCGATTGGTGATTGTCATTTTGTTGACCTAGTTTTTTTTGTTGGTTATGTTTATGATTTTTGGTTTTGTTTGTTGGTTATATTAATGTTTTTGGTTTTGTTTGTTGGTTATGTTCATGTTTTTGGTTTTGTTTAATGGTTATAAGGTGTTGATTTGGGTATGAATGTTTAGATCTCCTTGTTGTGAATATTATGTACAGTACTTAGCAATTCAGGATATGACCTATGCTTATTTGATATTTTGGATGTGTTTTTCAGGTTAGAGCCTCAAGAGTTGACTTCCATTTGTTTCGATAAGGTTTTTGTGTGTTATTTGGGTTCTTTTGTTTTGTCGATCTGAGTGATTCATGTTATGACTTATAATTGGTGTTTATTCGATGGGTGGTACCGCGAATCTGTTTGTACGAGTTTCTTTTTATTTTAGCTTTGACCTGGACGTAAGACTGATTATCAGTTCCCCTCCCCTTTGTGGGGTTCATTGACACTGTCAGCTTTATCTATTTTTTGGGGTATGTTGAGATCTCTTGGTTGATATGGTCAGTGGATATTTTAGATGAATTGAAGTTTCCTTCAGTGCATGATAGGTCCGTAGATATTTTTGGTTCTCAAATTCGTGTCATGTGATGATCTGCTTGTATATGTTGGTAAATATGGTTAATTGCGATCTTTTGAATTTATTTCCTTCAAATAATGGGTTTTTGGAGTTCTAATGATCTATGCTATATGATTGTAGTATCGTTTCAATTTGATTGATAAAACTTACACTTCTTCATTTCTTTTGGTTTGATTGCTTACTTGCTTGTATTATTCTGCAGAACAATCTTTCCTGAAAACTGGAGACAGGCAATGGTTCTTTTTCTGTCATAGAGATAGGAAGTATCCTAACGGTGGAAGGTCTAGTCGAGCAACTAGACATGGCTACTGGAAAGCTACTGGAAAAGATCGAAATGTGATATACAATTCTCGGTCAGTTGGAGTGAAAAAGACACTTGTTTTCTATCTTGGCAGAGCTCCTAGTGGTGAGCGAACTGATTGGGTTATGCATGAGTACACTATGGATGAAGATGAGCTTAAGACATGCCGTGATGTTAAGGTATTACCTTCAACTGACTATTTTGATTTAAAATTATTGTTTCTGTTGGTTGTTTTGATTACTAAAATAGTATTATTTATTTACTGACTGTCAAATTTTGATATAAATTCATTATCAGGACTATTATGCACTTTACAAGGTTTTCAAGAAAAGTGGACCGGGTCCTAAGAACGGTGAACAGTATGGTGCACCATTTAAAGAAGAAGAATGGGCAGATGACGATGTTGTAGATTTTAATGTAAATTCAGTTGACCGGGAGGTTCCAGAGGCTGCTGTTGACAATGTTATTGATCAGCATCAGCTGCAGCCGTTGTTTGATGATGAAATTGATGAAATCATTAAAGGGATGCTTGATGTTGAGCCTGTCCTTGACCAGCAACATGTGAATGGTTATGTTGACTTTCCTCAGGTGTGTGATCTGCCTGGAGTATTTTTTTTCTAAAATTCTTATAAATTTAGTTATGCCTTTATTCCTTTTTTGTTGTTGCGGGTAGGGGGAGGAACTTGAATCAGTACCATGTATGTAATCATCTGTTTTTATTTCCTGTTTTTGTAGTTTTGATCTCAATGTTCATAAATTGATACCCATTTGACAAAAAAAAAAACTTTGCAGCTTTTTATAAGGGTTTTGGTGGTTGTAGTTTTTCTTGTTTAGTTAAAATGTGAAAACCTGATCGTAGTATTGTTCTTCTCTCTTGTTTTCCTTCTATTGGTCTTCTCTCATATTTTCTAAATAACCGCTGACAGACATTTTTCCATGAATAATATAGGTTGCTGATGAAGAAACACGAAATATGGTCATGGATCAATTCTATGAGGCCATGATATTCCCTGATCCAAGTGAAAAACAGCAATCTAGCAGTCAGCTTTATGATGCGCAGCCCAGCTTTGACTTCAATCATCAATCAGTTTATTCTCACTTGTGTATTTCTGAAGCACCTGAGGTCACTTCCACTCCGAACATTCAAAGCGGGGAGGAGCTTGTCTTTTACGAGGAAGGCTTCTTGGAAATTAATGATCTCATTGATACCGAATCTACATTTTCAAATACAGATAAGCTTAACAACGATCTCATTGAGAACCTCCAGTTTGAAGATGTGTTGAGTGAATTTGATCCTTACCAAGATGCAGAGATGTTTCTTTGTGGCCTGGGGTCTATTAACGAAGAAACAGTTTCACATGCATATATGAATAGCACTGGCAGCAATATTGAAAATCAGAGTTACCAGTTGTTGTCCAATCCAGAAGACGCAAATCAAACTGTTGATGAATTCTGGATGCATGTTGAAAGAAACACCCGCAGTCCAGCTGAAGGTTATGATGGTTCTTTCTCTCTAACAAATCCAGGTATAGTCATTGGCACAAGCTACAATGTTGCTCAACTGGCAAATAATGATTTTACTTTCTTCGATTTGGATGGAGATTCAAGCTTCCCATCTCATTTCTGCTGAGCTCGTCACAGTTTACTGCTCCTGGTTGACACGCCAACTTGCGCGTGGCAGAAACCTTTTTGGAGTTTAAATTTTGTGATGTTTAGAGAGCTTTAGAAATTAAAACTAAAACTTACGACATTATATTTCTGTTTTTGAGCCAATTTCAAGTGGCTCTTCTGCTTAGAAAATGTCATAGGCTATCCCTAATTTGTCATAGTTTTTGGTCATGTTTAGGTGTTGTGTGTGACTCTGTCGGCTTTCCTACTGAAAGCACTGAAAATCAAAGAAGCACTGTAGAAGATGTTAAAACAAGTAGATTCTCCTCAGCTCTGTGGGCCTTTGTTGATTCAATACCTACCACTCCTGCATCAGCTGCTGAAAATCCCTTGGTAAATCGGGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTGAAGATCAAGCCCACCGACAACAACATTGCTGCAGGTAATAATGACACTGCAACTATGAAGAGAGCAGGCAGAAAGGGGGTCTCATTCCTTTTCTTCCCGATTCTTATTGCTTTATGTGCTTTCTTGTGGGTTTCTATTGGAAATTTAAGACTATTAGGGAGGTGCGTCTCCCCTTGA

Protein sequence

>MS.gene60757.t1

MGAVSESASADCFSEVMSSMPGFRFHPTDEELVMYYLKRKICGKKLKFNVIKETDVYKWDPEDLPEQSFLKTGDRQWFFFCHRDRKYPNGGRSSRATRHGYWKATGKDRNVIYNSRSVGVKKTLVFYLGRAPSGERTDWVMHEYTMDEDELKTCRDVKDYYALYKVFKKSGPGPKNGEQYGAPFKEEEWADDDVVDFNVNSVDREVPEAAVDNVIDQHQLQPLFDDEIDEIIKGMLDVEPVLDQQHVNGYVDFPQVADEETRNMVMDQFYEAMIFPDPSEKQQSSSQLYDAQPSFDFNHQSVYSHLCISEAPEVTSTPNIQSGEELVFYEEGFLEINDLIDTESTFSNTDKLNNDLIENLQFEDVLSEFDPYQDAEMFLCGLGSINEETVSHAYMNSTGSNIENQSYQLLSNPEDANQTVDEFWMHVERNTRSPAEGYDGSFSLTNPGVVCDSVGFPTESTENQRSTVEDVKTSRFSSALWAFVDSIPTTPASAAENPLVNRALNRMSSFSRVKIKPTDNNIAAGNNDTATMKRAGRKGVSFLFFPILIALCAFLWVSIGNLRLLGRCVSP