AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60811

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60811.t1 MTR_1g096240 92.888 464 25 3 1 463 1 457 0.0 781
MS.gene60811.t1 MTR_1g111140 61.422 464 148 5 13 463 25 470 0.0 529
MS.gene60811.t1 MTR_8g018770 36.092 435 257 10 40 461 115 541 2.79e-68 227
MS.gene60811.t1 MTR_1g091037 30.357 448 257 9 44 463 213 633 6.32e-49 177
MS.gene60811.t1 MTR_1g091037 48.750 80 38 2 44 121 87 165 1.74e-13 73.2
MS.gene60811.t1 MTR_1g091037 30.357 448 257 9 44 463 205 625 6.63e-49 177
MS.gene60811.t1 MTR_1g091037 48.750 80 38 2 44 121 79 157 1.80e-13 73.2
MS.gene60811.t1 MTR_4g120220 26.549 452 270 9 51 463 89 517 2.11e-33 132
MS.gene60811.t1 MTR_2g006820 25.117 426 253 11 41 461 85 449 2.94e-31 125
MS.gene60811.t1 MTR_5g093300 25.000 424 255 10 41 461 88 451 3.19e-31 125
MS.gene60811.t1 MTR_1g096250 77.941 68 11 2 189 255 14 78 5.60e-23 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60811.t1 AT1G34430 74.839 465 115 2 1 463 1 465 0.0 648
MS.gene60811.t1 AT3G25860 66.113 301 89 2 176 463 180 480 2.31e-138 406
MS.gene60811.t1 AT1G54220 35.991 439 251 11 40 461 112 537 1.45e-68 228
MS.gene60811.t1 AT1G54220 35.991 439 251 11 40 461 112 537 1.45e-68 228
MS.gene60811.t1 AT3G13930 36.322 435 255 10 40 461 112 537 3.57e-66 222
MS.gene60811.t1 AT3G52200 31.579 456 241 13 44 463 217 637 5.78e-48 174
MS.gene60811.t1 AT3G52200 46.250 80 40 2 44 121 90 168 2.63e-13 72.8
MS.gene60811.t1 AT3G52200 31.718 454 239 13 44 461 293 711 1.20e-47 175
MS.gene60811.t1 AT3G52200 39.450 109 60 4 18 121 137 244 1.23e-13 73.6
MS.gene60811.t1 AT3G06850 25.926 432 259 8 51 461 87 478 3.82e-33 131
MS.gene60811.t1 AT3G06850 25.926 432 259 8 51 461 87 478 3.82e-33 131
MS.gene60811.t1 AT4G26910 25.296 423 258 10 41 461 94 460 1.44e-27 115
MS.gene60811.t1 AT4G26910 25.296 423 258 10 41 461 93 459 1.51e-27 115
MS.gene60811.t1 AT4G26910 25.180 417 254 10 47 461 1 361 2.34e-26 110
MS.gene60811.t1 AT5G55070 31.892 185 119 4 279 461 281 460 1.76e-19 91.3
MS.gene60811.t1 AT5G55070 31.892 185 119 4 279 461 281 460 1.76e-19 91.3

Find 151 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGTGAAGACTGCGGTTTC+TGG 0.157662 1.2:-72323094 MS.gene60811:CDS
TAGGAATATGGTGGAGAGTT+TGG 0.228931 1.2:-72323020 MS.gene60811:CDS
GTGGAGTTGGGACAAATTAT+TGG 0.234111 1.2:-72323196 MS.gene60811:CDS
AGGAATATGGTGGAGAGTTT+GGG 0.248856 1.2:-72323019 MS.gene60811:CDS
GACATCCATGTCAGCTTTAT+CGG 0.262634 1.2:+72323552 None:intergenic
GACTAGAAAGTAAGATCTTT+AGG 0.307512 1.2:+72319942 None:intergenic
ATTATTGGGACTGGACCTTC+AGG 0.318351 1.2:-72323181 MS.gene60811:CDS
CTACAACTAGAGTTTATAAC+AGG 0.327423 1.2:+72322279 None:intergenic
ATCACCCTACGCGAAGAAAT+TGG 0.330501 1.2:-72323233 MS.gene60811:CDS
GCGGTTTCTGGTGTTGAATT+GGG 0.333108 1.2:-72323082 MS.gene60811:CDS
CATGAAAATTTCGCGGATCT+TGG 0.333734 1.2:+72323675 None:intergenic
ACTTATTACACCGGTGCTTC+AGG 0.337206 1.2:-72322190 MS.gene60811:CDS
TGCGGTTTCTGGTGTTGAAT+TGG 0.350193 1.2:-72323083 MS.gene60811:CDS
AGGAAGAGAGGAACGGTGTT+TGG 0.355488 1.2:+72323770 None:intergenic
TCCCTCCGAAGCCGGATGTT+TGG 0.365725 1.2:+72323273 None:intergenic
GGGAGGTGCGGTTGCGGCGG+AGG 0.371278 1.2:+72323740 None:intergenic
GGCTGTTGTTTCCAAACATC+CGG 0.392579 1.2:-72323284 MS.gene60811:CDS
TGGAGTTGGGACAAATTATT+GGG 0.398298 1.2:-72323195 MS.gene60811:CDS
ACTAGAAAGTAAGATCTTTA+GGG 0.398498 1.2:+72319943 None:intergenic
TGTTGCAGCGGTGGCGGAGC+CGG 0.406267 1.2:-72323113 MS.gene60811:CDS
CTGTTATAAACTCTAGTTGT+AGG 0.410006 1.2:-72322278 MS.gene60811:CDS
CTTTCCAACCTGGGAATGTT+CGG 0.410943 1.2:-72320367 MS.gene60811:CDS
GTTGAAGCATTTGCAGCTAC+AGG 0.415098 1.2:-72323139 MS.gene60811:CDS
GGTGCAGGTGAGGGTGCAGC+AGG 0.415137 1.2:+72323358 None:intergenic
GCCGCTGCAACAACCTTCTT+CGG 0.416181 1.2:+72323304 None:intergenic
AGATGAAGATGAAAGAGCTT+TGG 0.417275 1.2:+72323411 None:intergenic
CAGCGCGAGAGCAGTAGCCT+TGG 0.419733 1.2:+72322311 None:intergenic
AGGCTGCAGCTGCTTAGCTC+TGG 0.423811 1.2:+72322019 None:intergenic
TGTTTCCAAACATCCGGCTT+CGG 0.426350 1.2:-72323278 MS.gene60811:CDS
CTCTTCCCTCCCTCCGAAGC+CGG 0.426499 1.2:+72323265 None:intergenic
GTGGGTGCGGGTGAAGGTGC+AGG 0.429940 1.2:+72323343 None:intergenic
ATAAGATTACTCACAGTTCC+AGG 0.430463 1.2:+72320316 None:intergenic
GAATGCTGTGAGTAGGAATA+TGG 0.448089 1.2:-72323032 MS.gene60811:CDS
TGGTTGAAGTGGTGCGGTAG+AGG 0.454583 1.2:+72323719 None:intergenic
AACAACGACACTATCGCCTT+TGG 0.455584 1.2:+72323582 None:intergenic
GTGGAAGGAGTTGGTTGATA+AGG 0.457344 1.2:-72322042 MS.gene60811:CDS
GGTGCGGTTGCGGCGGAGGA+CGG 0.457710 1.2:+72323744 None:intergenic
AGGGAGTGTTGCAGCGGTGG+CGG 0.459193 1.2:-72323119 MS.gene60811:CDS
ACAGGCGTGGGTGCGGGTGA+AGG 0.462854 1.2:+72323337 None:intergenic
AGATTCTACAGGCGTGGGTG+CGG 0.463517 1.2:+72323330 None:intergenic
GCCGCTATTGTTGTTGAAGA+AGG 0.464692 1.2:-72323505 MS.gene60811:CDS
GCATTCTGCATTGTCGTAAA+CGG 0.467916 1.2:+72323049 None:intergenic
CAAGGCTACTGCTCTCGCGC+TGG 0.468408 1.2:-72322310 MS.gene60811:CDS
TGCGGGTGAAGGTGCAGGTG+AGG 0.469098 1.2:+72323348 None:intergenic
TAAGGAGTTGAAGGTGGAGT+TGG 0.471613 1.2:-72323209 MS.gene60811:CDS
GTTGCGGCGGAGGACGGTGG+AGG 0.472614 1.2:+72323750 None:intergenic
GCCAACTGTTGTGGCTACTA+AGG 0.480368 1.2:-72320200 MS.gene60811:CDS
GGTGCTTCAGGATGCTGATA+AGG 0.482446 1.2:-72322178 MS.gene60811:intron
GGTGAGGGTGCAGCAGGAGA+AGG 0.485903 1.2:+72323364 None:intergenic
CGGTTTCTGGTGTTGAATTG+GGG 0.486100 1.2:-72323081 MS.gene60811:CDS
GTATACCCAACTCTAAAAGT+AGG 0.486215 1.2:+72322992 None:intergenic
GCGGGTGAAGGTGCAGGTGA+GGG 0.491127 1.2:+72323349 None:intergenic
AAGGAGTTGAAGGTGGAGTT+GGG 0.493285 1.2:-72323208 MS.gene60811:CDS
GCAGTCGCTGTGGCTATAGA+TGG 0.499476 1.2:-72322216 MS.gene60811:CDS
TCTATTCATTGTCTAGAAAG+TGG 0.500185 1.2:-72322061 MS.gene60811:CDS
GATTCTACAGGCGTGGGTGC+GGG 0.500688 1.2:+72323331 None:intergenic
GGTAGAGGGAGGTGCGGTTG+CGG 0.500765 1.2:+72323734 None:intergenic
TTAGCCAATTTCTTCGCGTA+GGG 0.501925 1.2:+72323229 None:intergenic
TTTGATGCTATTCTGCCTCC+TGG 0.504002 1.2:-72320334 MS.gene60811:CDS
TTGGGACAAATTATTGGGAC+TGG 0.506592 1.2:-72323190 MS.gene60811:CDS
CCGAGGGTAAAATCGTCTCT+TGG 0.507291 1.2:-72323630 MS.gene60811:CDS
CTTAGCCAATTTCTTCGCGT+AGG 0.509215 1.2:+72323228 None:intergenic
GATCAACGCCGAACATTCCC+AGG 0.510652 1.2:+72320359 None:intergenic
AGATGAAAGAGCTTTGGACT+TGG 0.512131 1.2:+72323417 None:intergenic
TACAGGGAGTGTTGCAGCGG+TGG 0.515441 1.2:-72323122 MS.gene60811:CDS
GGAATATGGTGGAGAGTTTG+GGG 0.518956 1.2:-72323018 MS.gene60811:CDS
TACTTTCACTCTTTCCAACC+TGG 0.519342 1.2:-72320377 MS.gene60811:CDS
CGGTTGAGATTCTACAGGCG+TGG 0.521585 1.2:+72323324 None:intergenic
GGTTGAAGTGGTGCGGTAGA+GGG 0.523309 1.2:+72323720 None:intergenic
GAAATTGGCTAAGGAGTTGA+AGG 0.526925 1.2:-72323218 MS.gene60811:CDS
TTCTTCGGTTGAGATTCTAC+AGG 0.527357 1.2:+72323319 None:intergenic
GTCATTGTGGAACTGAGTGC+TGG 0.528269 1.2:+72323652 None:intergenic
TGTAGAATCTCAACCGAAGA+AGG 0.528458 1.2:-72323317 MS.gene60811:CDS
GCGGTTGCGGCGGAGGACGG+TGG 0.528877 1.2:+72323747 None:intergenic
AAATATCAGATCAAGTCAAA+AGG 0.529005 1.2:-72322357 MS.gene60811:intron
GAAGGTGATGTCGCCGCTGT+TGG 0.535492 1.2:-72323487 MS.gene60811:CDS
GCGGACGACGAAGTGGTTTG+TGG 0.535513 1.2:+72323699 None:intergenic
GTCTAGAAAGTGGAAGGAGT+TGG 0.536472 1.2:-72322051 MS.gene60811:CDS
TGGACCTTCAGGGAGGGTCG+TGG 0.540578 1.2:-72323170 MS.gene60811:CDS
AACATCCGGCTTCGGAGGGA+GGG 0.542090 1.2:-72323270 MS.gene60811:CDS
AGAGGGAGGTGCGGTTGCGG+CGG 0.545245 1.2:+72323737 None:intergenic
AAACATCCGGCTTCGGAGGG+AGG 0.546214 1.2:-72323271 MS.gene60811:CDS
CCAGAAACCGCAGTCTTCAC+CGG 0.546950 1.2:+72323094 None:intergenic
TTCCAAACATCCGGCTTCGG+AGG 0.548692 1.2:-72323275 MS.gene60811:CDS
TCCTTAGTAGCCACAACAGT+TGG 0.552942 1.2:+72320199 None:intergenic
TCCAAACATCCGGCTTCGGA+GGG 0.553180 1.2:-72323274 MS.gene60811:CDS
AGCAGGAGAAGGAGAAGTAG+AGG 0.553943 1.2:+72323375 None:intergenic
GGAGGACGGTGGAGGAAGAG+AGG 0.554510 1.2:+72323758 None:intergenic
TGTTATAAACTCTAGTTGTA+GGG 0.556097 1.2:-72322277 MS.gene60811:CDS
ATTGGCTAAGGAGTTGAAGG+TGG 0.556855 1.2:-72323215 MS.gene60811:CDS
TTATTGGGACTGGACCTTCA+GGG 0.556941 1.2:-72323180 MS.gene60811:CDS
TATACCCAACTCTAAAAGTA+GGG 0.558796 1.2:+72322993 None:intergenic
AACTCTGTCTCAGATTATTG+AGG 0.559596 1.2:-72319967 MS.gene60811:CDS
GGTTGAGATTCTACAGGCGT+GGG 0.563091 1.2:+72323325 None:intergenic
GTCTCTTGGATCAAATCAGA+AGG 0.563675 1.2:-72323616 MS.gene60811:CDS
ACTTTCACTCTTTCCAACCT+GGG 0.563865 1.2:-72320376 MS.gene60811:CDS
GCTACTAAGGATGGTCGCAT+TGG 0.565084 1.2:-72320187 MS.gene60811:CDS
AGTTTCAGCGAGAAATGCGA+TGG 0.567042 1.2:+72323459 None:intergenic
ATTTCTCGCTGAAACTGAAG+AGG 0.570927 1.2:-72323452 MS.gene60811:CDS
TTATCAGCATCCTGAAGCAC+CGG 0.577664 1.2:+72322180 None:intergenic
TGGGACTGGACCTTCAGGGA+GGG 0.578861 1.2:-72323176 MS.gene60811:CDS
TTGAAGCATTTGCAGCTACA+GGG 0.579570 1.2:-72323138 MS.gene60811:CDS
ATAAACTCTAGTTGTAGGGA+TGG 0.580204 1.2:-72322273 MS.gene60811:CDS
AACGCCGAACATTCCCAGGT+TGG 0.582154 1.2:+72320363 None:intergenic
TTCATTGTCTAGAAAGTGGA+AGG 0.582367 1.2:-72322057 MS.gene60811:CDS
GCAGATCACCGTGTAATCTA+CGG 0.582939 1.2:-72320014 MS.gene60811:CDS
GAAGTGGTTTGTGGTTGAAG+TGG 0.588895 1.2:+72323708 None:intergenic
GTGCTGGCATGAAAATTTCG+CGG 0.589246 1.2:+72323668 None:intergenic
ACTGTTGTGGCTACTAAGGA+TGG 0.592061 1.2:-72320196 MS.gene60811:CDS
AGCTACAGGGAGTGTTGCAG+CGG 0.596499 1.2:-72323125 MS.gene60811:CDS
ACCGAAGAAGGTTGTTGCAG+CGG 0.599613 1.2:-72323305 MS.gene60811:CDS
GAGAGCATCAAGTGCATCAG+TGG 0.600462 1.2:+72322964 None:intergenic
TGGCATGAAGAATCAAATGC+AGG 0.601842 1.2:-72320167 MS.gene60811:intron
AACATCACAGCCAACTGTTG+TGG 0.603272 1.2:-72320209 MS.gene60811:CDS
GTACCTGTGGTGTATTCATG+AGG 0.605362 1.2:+72321999 None:intergenic
TGGTGTTGAATTGGGGACTG+TGG 0.606170 1.2:-72323074 MS.gene60811:CDS
TGGTGCGGTAGAGGGAGGTG+CGG 0.606877 1.2:+72323728 None:intergenic
TGCTGTGAGTAGGAATATGG+TGG 0.607504 1.2:-72323029 MS.gene60811:CDS
GATCAGAACCGTAGATTACA+CGG 0.607965 1.2:+72320006 None:intergenic
TATGACAGCATTGCTTGCCA+AGG 0.608654 1.2:-72322328 MS.gene60811:CDS
CAATGCAGAATGCTGTGAGT+AGG 0.608840 1.2:-72323039 MS.gene60811:CDS
CTACGCGAAGAAATTGGCTA+AGG 0.612343 1.2:-72323227 MS.gene60811:CDS
TCTCTTGGATCAAATCAGAA+GGG 0.623110 1.2:-72323615 MS.gene60811:CDS
GTCGCTGTGGCTATAGATGG+TGG 0.623776 1.2:-72322213 MS.gene60811:CDS
TCTTGGCGCGGACGACGAAG+TGG 0.624233 1.2:+72323692 None:intergenic
CTCTTGGATCAAATCAGAAG+GGG 0.626293 1.2:-72323614 MS.gene60811:CDS
ACTTGATGCTCTCTACAAGA+AGG 0.626411 1.2:-72322954 MS.gene60811:intron
TGAATCCGATAAAGCTGACA+TGG 0.626546 1.2:-72323557 MS.gene60811:CDS
GGAGGGAGGGAAGAGAGTGG+TGG 0.629189 1.2:-72323257 MS.gene60811:CDS
CATCAACATTGCAGTCGCTG+TGG 0.633131 1.2:-72322226 MS.gene60811:CDS
TTAGCCACGACCCTCCCTGA+AGG 0.633573 1.2:+72323166 None:intergenic
GGTTTGTGGTTGAAGTGGTG+CGG 0.638794 1.2:+72323713 None:intergenic
GAAGGGGACAAACTCTCCAA+AGG 0.641779 1.2:-72323598 MS.gene60811:CDS
GGCGGAGCCGGTGAAGACTG+CGG 0.642471 1.2:-72323101 MS.gene60811:CDS
TTGGGACTGGACCTTCAGGG+AGG 0.647676 1.2:-72323177 MS.gene60811:CDS
AAATTTCGCGGATCTTGGCG+CGG 0.648033 1.2:+72323680 None:intergenic
TTCGGAGGGAGGGAAGAGAG+TGG 0.651131 1.2:-72323260 MS.gene60811:CDS
GTTTCAGCGAGAAATGCGAT+GGG 0.651735 1.2:+72323460 None:intergenic
CTCAGTTCCACAATGACCGA+GGG 0.651964 1.2:-72323646 MS.gene60811:CDS
CAGCCTCATGAATACACCAC+AGG 0.661316 1.2:-72322002 MS.gene60811:intron
ACCTTCTTCAACAACAATAG+CGG 0.666193 1.2:+72323504 None:intergenic
TGAAGTGGTGCGGTAGAGGG+AGG 0.670069 1.2:+72323723 None:intergenic
ACTCAGTTCCACAATGACCG+AGG 0.671313 1.2:-72323647 MS.gene60811:CDS
AGATGGTGGACTTATTACAC+CGG 0.677164 1.2:-72322199 MS.gene60811:CDS
GAATATGGTGGAGAGTTTGG+GGG 0.700419 1.2:-72323017 MS.gene60811:CDS
GATGTCGAAACTTTCTACGA+CGG 0.722494 1.2:-72323535 MS.gene60811:CDS
CTTCAACAACAATAGCGGCG+AGG 0.722816 1.2:+72323509 None:intergenic
ACGGTGGAGGAAGAGAGGAA+CGG 0.731025 1.2:+72323763 None:intergenic
AGATTACTCACAGTTCCAGG+AGG 0.732119 1.2:+72320319 None:intergenic
TACAACTAGAGTTTATAACA+GGG 0.744003 1.2:+72322280 None:intergenic
TGCGATGGGAGATCCAACAG+CGG 0.746283 1.2:+72323474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATAGTCTATAAAAAAA+AGG + chr1.2:72322937-72322956 None:intergenic 10.0%
!! AAAAAATTAAAAAAATGGCT+TGG - chr1.2:72321901-72321920 MS.gene60811:intron 15.0%
!! ACAGTAATTATCTATTTATT+AGG - chr1.2:72321750-72321769 MS.gene60811:intron 15.0%
!! CAATAAAATCATTTAACATA+AGG - chr1.2:72322612-72322631 MS.gene60811:intron 15.0%
!! TGTCCAAAAAATTAAAAAAA+TGG - chr1.2:72321896-72321915 MS.gene60811:intron 15.0%
!! TTATTGTTTATGAAATTGTA+AGG + chr1.2:72322513-72322532 None:intergenic 15.0%
!!! AAATGATTTTATTGAAACTT+TGG + chr1.2:72322606-72322625 None:intergenic 15.0%
!!! AAGCCATTTTTTTAATTTTT+TGG + chr1.2:72321902-72321921 None:intergenic 15.0%
!!! ATATTAACAAATCTAGTTTA+AGG + chr1.2:72322345-72322364 None:intergenic 15.0%
!!! TTGGTCAAATATTTAATTTA+AGG - chr1.2:72322808-72322827 MS.gene60811:intron 15.0%
!! AAGTTATGTATTTAATGCAT+TGG + chr1.2:72323164-72323183 None:intergenic 20.0%
!! ATAGTCTATAAAAAAAAGGA+GGG + chr1.2:72322933-72322952 None:intergenic 20.0%
!! ATTCAACTGTAAAAACATTA+TGG + chr1.2:72323249-72323268 None:intergenic 20.0%
!! GCTTATAATCTAACATAAAA+TGG - chr1.2:72321596-72321615 MS.gene60811:intron 20.0%
!! GTTTATTTGACGTATATTAT+AGG - chr1.2:72321638-72321657 MS.gene60811:intron 20.0%
!! TAAAGAATAATTTCCTAATC+TGG + chr1.2:72323119-72323138 None:intergenic 20.0%
!! TATAGTCTATAAAAAAAAGG+AGG + chr1.2:72322934-72322953 None:intergenic 20.0%
!! TTCAACTGTAAAAACATTAT+GGG + chr1.2:72323248-72323267 None:intergenic 20.0%
!! TTTATTAAAAATCCCAACAA+TGG + chr1.2:72320912-72320931 None:intergenic 20.0%
!!! GAGTATGACTTATTTATTTT+TGG - chr1.2:72323613-72323632 MS.gene60811:CDS 20.0%
!!! TCAAATAAACCTTTTTAACA+GGG + chr1.2:72321628-72321647 None:intergenic 20.0%
!!! TGTTGGGATTTTTAATAAAT+GGG - chr1.2:72320913-72320932 MS.gene60811:intron 20.0%
!!! TTGAATTTTGACATTCAATT+GGG - chr1.2:72323263-72323282 MS.gene60811:CDS 20.0%
!!! TTGTTGGGATTTTTAATAAA+TGG - chr1.2:72320912-72320931 MS.gene60811:intron 20.0%
! AAAATCCTTGAAGAAAAGTT+TGG - chr1.2:72322068-72322087 MS.gene60811:CDS 25.0%
! AAACTAAAAATGGTAACAGA+GGG + chr1.2:72322665-72322684 None:intergenic 25.0%
! AAATATCAGATCAAGTCAAA+AGG - chr1.2:72321371-72321390 MS.gene60811:intron 25.0%
! AGAACAAGCTATATAATGTT+TGG - chr1.2:72323052-72323071 MS.gene60811:CDS 25.0%
! ATGAACTTTCCAATTTATCA+TGG - chr1.2:72321788-72321807 MS.gene60811:intron 25.0%
! ATTACATAATTCACCATTGT+TGG - chr1.2:72320896-72320915 MS.gene60811:intron 25.0%
! CAAAGCATGAAATTAATGAT+TGG - chr1.2:72322382-72322401 MS.gene60811:intron 25.0%
! GAACAAGCTATATAATGTTT+GGG - chr1.2:72323053-72323072 MS.gene60811:CDS 25.0%
! TACAACTAGAGTTTATAACA+GGG + chr1.2:72321451-72321470 None:intergenic 25.0%
! TATGTGTAAGTGTTATATAC+AGG + chr1.2:72322747-72322766 None:intergenic 25.0%
! TCATGATATGTGTATAGAAT+TGG - chr1.2:72321955-72321974 MS.gene60811:intron 25.0%
! TGTTATAAACTCTAGTTGTA+GGG - chr1.2:72321451-72321470 MS.gene60811:intron 25.0%
! TTAAGGATTCCATGATAAAT+TGG + chr1.2:72321800-72321819 None:intergenic 25.0%
! TTACATAATTCACCATTGTT+GGG - chr1.2:72320897-72320916 MS.gene60811:intron 25.0%
! TTATAGAACACGAATGATTA+GGG - chr1.2:72320950-72320969 MS.gene60811:intron 25.0%
! TTGTTTATTCTAGATTACCA+TGG + chr1.2:72323007-72323026 None:intergenic 25.0%
! TTTATAGAACACGAATGATT+AGG - chr1.2:72320949-72320968 MS.gene60811:intron 25.0%
! TTTGCATCTTAATATTTCCA+GGG - chr1.2:72322886-72322905 MS.gene60811:intron 25.0%
!! AGCATTTTCCAAACTAAAAA+TGG + chr1.2:72322675-72322694 None:intergenic 25.0%
!! GTCAAATAAACCTTTTTAAC+AGG + chr1.2:72321629-72321648 None:intergenic 25.0%
!! TTCTGTTCTTTTATAACTGA+AGG - chr1.2:72323664-72323683 MS.gene60811:CDS 25.0%
!! TTTTGCATCTTAATATTTCC+AGG - chr1.2:72322885-72322904 MS.gene60811:intron 25.0%
!!! CATTATATAGCTTGTTCTTT+TGG + chr1.2:72323050-72323069 None:intergenic 25.0%
!!! GTTGAATTTTGACATTCAAT+TGG - chr1.2:72323262-72323281 MS.gene60811:CDS 25.0%
!!! TACTTGGTTTTATTCTTCTT+GGG - chr1.2:72321999-72322018 MS.gene60811:intron 25.0%
!!! TTTGTGGGTTTATTTTTGTA+GGG - chr1.2:72323478-72323497 MS.gene60811:CDS 25.0%
!!! TTTTGTGGGTTTATTTTTGT+AGG - chr1.2:72323477-72323496 MS.gene60811:CDS 25.0%
AAATCCTTCACAACAAATAG+CGG - chr1.2:72322850-72322869 MS.gene60811:intron 30.0%
AACATGAGTCTACAAGTTTA+AGG + chr1.2:72321308-72321327 None:intergenic 30.0%
AACATGCAATCAATCATACA+TGG + chr1.2:72321203-72321222 None:intergenic 30.0%
AACCTCAAAATATACAGCTA+AGG + chr1.2:72322233-72322252 None:intergenic 30.0%
AACTAAAAATGGTAACAGAG+GGG + chr1.2:72322664-72322683 None:intergenic 30.0%
AAGGTTGGAAGAATAAATCT+GGG - chr1.2:72322278-72322297 MS.gene60811:CDS 30.0%
AATATTTCCAGGGAAGTTTA+TGG - chr1.2:72322896-72322915 MS.gene60811:intron 30.0%
AATCCTTAAATTTGTGGGTA+GGG - chr1.2:72321811-72321830 MS.gene60811:intron 30.0%
ACAAATAAAGCGAATATACG+AGG + chr1.2:72322979-72322998 None:intergenic 30.0%
ATAGATAATTACTGTACCTG+TGG + chr1.2:72321745-72321764 None:intergenic 30.0%
ATATTTGACCAATCAAGTTC+TGG + chr1.2:72322800-72322819 None:intergenic 30.0%
CAAACTAAAAATGGTAACAG+AGG + chr1.2:72322666-72322685 None:intergenic 30.0%
CAAGAAGAATAAAACCAAGT+AGG + chr1.2:72322000-72322019 None:intergenic 30.0%
CATGGAATCCTTAAATTTGT+GGG - chr1.2:72321806-72321825 MS.gene60811:intron 30.0%
CTACAACTAGAGTTTATAAC+AGG + chr1.2:72321452-72321471 None:intergenic 30.0%
CTGTTATAAACTCTAGTTGT+AGG - chr1.2:72321450-72321469 MS.gene60811:intron 30.0%
GTTATAAAAGAACAGAAGTC+TGG + chr1.2:72323661-72323680 None:intergenic 30.0%
GTTCAGACATTTGTATATGT+TGG - chr1.2:72323591-72323610 MS.gene60811:CDS 30.0%
TAAGGTTGGAAGAATAAATC+TGG - chr1.2:72322277-72322296 MS.gene60811:CDS 30.0%
TACATCAACTAACTTTCTAG+AGG - chr1.2:72322194-72322213 MS.gene60811:CDS 30.0%
TATAGAACACGAATGATTAG+GGG - chr1.2:72320951-72320970 MS.gene60811:intron 30.0%
TCATGGAATCCTTAAATTTG+TGG - chr1.2:72321805-72321824 MS.gene60811:intron 30.0%
TCTATTCATTGTCTAGAAAG+TGG - chr1.2:72321667-72321686 MS.gene60811:intron 30.0%
TGCTAAGCTATTTAATACGA+GGG - chr1.2:72322142-72322161 MS.gene60811:intron 30.0%
TTGTTAATATTGCGAGAACA+GGG - chr1.2:72322355-72322374 MS.gene60811:intron 30.0%
TTTGTTAATATTGCGAGAAC+AGG - chr1.2:72322354-72322373 MS.gene60811:intron 30.0%
! TATACCCAACTCTAAAAGTA+GGG + chr1.2:72320738-72320757 None:intergenic 30.0%
! TTCCTTAGCTGTATATTTTG+AGG - chr1.2:72322228-72322247 MS.gene60811:CDS 30.0%
!! ACGTGAATTTGATTGTTTTG+TGG - chr1.2:72323462-72323481 MS.gene60811:CDS 30.0%
!! CGTGAATTTGATTGTTTTGT+GGG - chr1.2:72323463-72323482 MS.gene60811:CDS 30.0%
!! TTGAAGAGTGCTTTAAGTTA+AGG - chr1.2:72322259-72322278 MS.gene60811:CDS 30.0%
!!! CTACTTGGTTTTATTCTTCT+TGG - chr1.2:72321998-72322017 MS.gene60811:intron 30.0%
!!! CTCTGTTACCATTTTTAGTT+TGG - chr1.2:72322664-72322683 MS.gene60811:intron 30.0%
!!! TTGTGGGTTTATTTTTGTAG+GGG - chr1.2:72323479-72323498 MS.gene60811:CDS 30.0%
AACTCTGTCTCAGATTATTG+AGG - chr1.2:72323761-72323780 MS.gene60811:CDS 35.0%
AATAGTACCATAAACTTCCC+TGG + chr1.2:72322906-72322925 None:intergenic 35.0%
ACATTCAACAGTATTGTCTG+TGG - chr1.2:72322454-72322473 MS.gene60811:intron 35.0%
ACCTTCTTCAACAACAATAG+CGG + chr1.2:72320227-72320246 None:intergenic 35.0%
ACTAAAAATGGTAACAGAGG+GGG + chr1.2:72322663-72322682 None:intergenic 35.0%
AGAAACTCAAGAATCCTACA+TGG - chr1.2:72322718-72322737 MS.gene60811:intron 35.0%
AGATGAAGATGAAAGAGCTT+TGG + chr1.2:72320320-72320339 None:intergenic 35.0%
ATAAACTCTAGTTGTAGGGA+TGG - chr1.2:72321455-72321474 MS.gene60811:intron 35.0%
ATAAGATTACTCACAGTTCC+AGG + chr1.2:72323415-72323434 None:intergenic 35.0%
ATACGAGGTAGAATTGTACT+AGG + chr1.2:72322964-72322983 None:intergenic 35.0%
CTCTTTAAGCATACCAGATT+AGG - chr1.2:72323103-72323122 MS.gene60811:CDS 35.0%
CTGAAGAGATAACTTGAAGT+CGG - chr1.2:72322414-72322433 MS.gene60811:intron 35.0%
GAATCCTTAAATTTGTGGGT+AGG - chr1.2:72321810-72321829 MS.gene60811:intron 35.0%
GCTAAGCTATTTAATACGAG+GGG - chr1.2:72322143-72322162 MS.gene60811:intron 35.0%
GTGCTAAGCTATTTAATACG+AGG - chr1.2:72322141-72322160 MS.gene60811:intron 35.0%
TAGCTAGATGACTATCACAT+TGG - chr1.2:72320851-72320870 MS.gene60811:intron 35.0%
TATCTTACCCCACTTTAGTT+AGG - chr1.2:72322551-72322570 MS.gene60811:intron 35.0%
TCTCTTGGATCAAATCAGAA+GGG - chr1.2:72320113-72320132 MS.gene60811:intron 35.0%
TGAAGAGATAACTTGAAGTC+GGG - chr1.2:72322415-72322434 MS.gene60811:intron 35.0%
TGGAGTTGGGACAAATTATT+GGG - chr1.2:72320533-72320552 MS.gene60811:intron 35.0%
TGTGATCTAATCGAAAGTGA+TGG - chr1.2:72323436-72323455 MS.gene60811:CDS 35.0%
TTCATTGTCTAGAAAGTGGA+AGG - chr1.2:72321671-72321690 MS.gene60811:intron 35.0%
! AGAGTGCTTTAAGTTAAGGT+TGG - chr1.2:72322263-72322282 MS.gene60811:CDS 35.0%
! ATGATTAGGGGAAAAAGTGT+TGG - chr1.2:72320963-72320982 MS.gene60811:intron 35.0%
! ATTGAAACTTTGGTCTTCCA+TGG + chr1.2:72322596-72322615 None:intergenic 35.0%
! ATTTTTGTAGGGGGCAATTA+TGG - chr1.2:72323489-72323508 MS.gene60811:CDS 35.0%
! GTATACCCAACTCTAAAAGT+AGG + chr1.2:72320739-72320758 None:intergenic 35.0%
! GTTAGCCAAACTTTTCTTCA+AGG + chr1.2:72322076-72322095 None:intergenic 35.0%
!! CAGCAAATTTTAGCAAGTGT+TGG - chr1.2:72320998-72321017 MS.gene60811:intron 35.0%
!! CTGATTTCTGTTGTTTCTCT+AGG - chr1.2:72323328-72323347 MS.gene60811:CDS 35.0%
!! GTCATTGATTTCACCATTGT+AGG + chr1.2:72322034-72322053 None:intergenic 35.0%
!! TGACTATCACATTGGTTCTT+TGG - chr1.2:72320859-72320878 MS.gene60811:intron 35.0%
!!! TGTGGGTTTATTTTTGTAGG+GGG - chr1.2:72323480-72323499 MS.gene60811:CDS 35.0%
AAATTTGTGGGTAGGGACTT+AGG - chr1.2:72321818-72321837 MS.gene60811:intron 40.0%
AAGCTATTTAATACGAGGGG+TGG - chr1.2:72322146-72322165 MS.gene60811:intron 40.0%
AATTTGTGGGTAGGGACTTA+GGG - chr1.2:72321819-72321838 MS.gene60811:intron 40.0%
ACAACAGAAATCAGTGAAGC+AGG + chr1.2:72323322-72323341 None:intergenic 40.0%
ACTTGATGCTCTCTACAAGA+AGG - chr1.2:72320774-72320793 MS.gene60811:intron 40.0%
ACTTTCACTCTTTCCAACCT+GGG - chr1.2:72323352-72323371 MS.gene60811:CDS 40.0%
AGTCCCTACCCACAAATTTA+AGG + chr1.2:72321817-72321836 None:intergenic 40.0%
AGTGGGGTAAGATAAGACAT+TGG + chr1.2:72322545-72322564 None:intergenic 40.0%
ATTTCTCGCTGAAACTGAAG+AGG - chr1.2:72320276-72320295 MS.gene60811:intron 40.0%
CAACAGAAATCAGTGAAGCA+GGG + chr1.2:72323321-72323340 None:intergenic 40.0%
CATGAAAATTTCGCGGATCT+TGG + chr1.2:72320056-72320075 None:intergenic 40.0%
CTAAAAATGGTAACAGAGGG+GGG + chr1.2:72322662-72322681 None:intergenic 40.0%
CTCTTGGATCAAATCAGAAG+GGG - chr1.2:72320114-72320133 MS.gene60811:intron 40.0%
CTGAAGGAATGCAAATTTGC+AGG - chr1.2:72323680-72323699 MS.gene60811:CDS 40.0%
CTGGGTTTGAAAGAATTAGC+AGG - chr1.2:72322296-72322315 MS.gene60811:CDS 40.0%
GAAATTGGCTAAGGAGTTGA+AGG - chr1.2:72320510-72320529 MS.gene60811:intron 40.0%
GAATGCTGTGAGTAGGAATA+TGG - chr1.2:72320696-72320715 MS.gene60811:intron 40.0%
GATCAGAACCGTAGATTACA+CGG + chr1.2:72323725-72323744 None:intergenic 40.0%
GATGTCGAAACTTTCTACGA+CGG - chr1.2:72320193-72320212 MS.gene60811:CDS 40.0%
GCATTCTGCATTGTCGTAAA+CGG + chr1.2:72320682-72320701 None:intergenic 40.0%
GTCTCTTGGATCAAATCAGA+AGG - chr1.2:72320112-72320131 MS.gene60811:intron 40.0%
GTCTGTGGTCAGTTACAAAT+TGG - chr1.2:72322469-72322488 MS.gene60811:intron 40.0%
GTGGAGTTGGGACAAATTAT+TGG - chr1.2:72320532-72320551 MS.gene60811:intron 40.0%
TACAGCTAAGGAACATCATC+AGG + chr1.2:72322221-72322240 None:intergenic 40.0%
TACTTTCACTCTTTCCAACC+TGG - chr1.2:72323351-72323370 MS.gene60811:CDS 40.0%
TAGACACAACACTAACACGT+TGG - chr1.2:72321034-72321053 MS.gene60811:intron 40.0%
TCCAGTCTACAAAACCTACT+TGG - chr1.2:72321983-72322002 MS.gene60811:intron 40.0%
TGAATCCGATAAAGCTGACA+TGG - chr1.2:72320171-72320190 MS.gene60811:CDS 40.0%
TGGCATGAAGAATCAAATGC+AGG - chr1.2:72323561-72323580 MS.gene60811:CDS 40.0%
TGGTGTTCACCCTGTTAAAA+AGG - chr1.2:72321616-72321635 MS.gene60811:intron 40.0%
TGTAGAATCTCAACCGAAGA+AGG - chr1.2:72320411-72320430 MS.gene60811:intron 40.0%
TTAGCCAATTTCTTCGCGTA+GGG + chr1.2:72320502-72320521 None:intergenic 40.0%
TTATATACAGGCAGCCATGT+AGG + chr1.2:72322735-72322754 None:intergenic 40.0%
TTCTTCGGTTGAGATTCTAC+AGG + chr1.2:72320412-72320431 None:intergenic 40.0%
TTGGGACAAATTATTGGGAC+TGG - chr1.2:72320538-72320557 MS.gene60811:intron 40.0%
! AGGAATATGGTGGAGAGTTT+GGG - chr1.2:72320709-72320728 MS.gene60811:intron 40.0%
! GACATCCATGTCAGCTTTAT+CGG + chr1.2:72320179-72320198 None:intergenic 40.0%
! TAGGAATATGGTGGAGAGTT+TGG - chr1.2:72320708-72320727 MS.gene60811:intron 40.0%
! TTGAAGCATTTGCAGCTACA+GGG - chr1.2:72320590-72320609 MS.gene60811:intron 40.0%
!! ACCAAGTAGGTTTTGTAGAC+TGG + chr1.2:72321987-72322006 None:intergenic 40.0%
!! AGATGAAAGAGCTTTGGACT+TGG + chr1.2:72320314-72320333 None:intergenic 40.0%
!! AGATGGTGGACTTATTACAC+CGG - chr1.2:72321529-72321548 MS.gene60811:intron 40.0%
!! AGTACCGCTATTTGTTGTGA+AGG + chr1.2:72322857-72322876 None:intergenic 40.0%
!! CGCTTTATTTGTTTCTGCCA+TGG - chr1.2:72322987-72323006 MS.gene60811:CDS 40.0%
!! TTAGCAAGTGTTGGCAAACA+CGG - chr1.2:72321007-72321026 MS.gene60811:intron 40.0%
AACAACGACACTATCGCCTT+TGG + chr1.2:72320149-72320168 None:intergenic 45.0%
AACATCACAGCCAACTGTTG+TGG - chr1.2:72323519-72323538 MS.gene60811:CDS 45.0%
AAGGAGTTGAAGGTGGAGTT+GGG - chr1.2:72320520-72320539 MS.gene60811:intron 45.0%
AATTAGCAGGAGAGCTCATG+TGG - chr1.2:72322309-72322328 MS.gene60811:CDS 45.0%
ACTGTTGTGGCTACTAAGGA+TGG - chr1.2:72323532-72323551 MS.gene60811:CDS 45.0%
ACTTATTACACCGGTGCTTC+AGG - chr1.2:72321538-72321557 MS.gene60811:intron 45.0%
AGATAACTTGAAGTCGGGTG+CGG - chr1.2:72322420-72322439 MS.gene60811:intron 45.0%
AGATTACTCACAGTTCCAGG+AGG + chr1.2:72323412-72323431 None:intergenic 45.0%
AGTTTCAGCGAGAAATGCGA+TGG + chr1.2:72320272-72320291 None:intergenic 45.0%
ATCACCCTACGCGAAGAAAT+TGG - chr1.2:72320495-72320514 MS.gene60811:intron 45.0%
ATGGTCAGCCAGAACTTGAT+TGG - chr1.2:72322789-72322808 MS.gene60811:intron 45.0%
ATTATTGGGACTGGACCTTC+AGG - chr1.2:72320547-72320566 MS.gene60811:intron 45.0%
ATTGGCTAAGGAGTTGAAGG+TGG - chr1.2:72320513-72320532 MS.gene60811:intron 45.0%
CAACACGACAATGACACATG+TGG + chr1.2:72321100-72321119 None:intergenic 45.0%
CAATGCAGAATGCTGTGAGT+AGG - chr1.2:72320689-72320708 MS.gene60811:intron 45.0%
CTACGCGAAGAAATTGGCTA+AGG - chr1.2:72320501-72320520 MS.gene60811:intron 45.0%
CTGACCATACACAGAAGAGT+GGG + chr1.2:72322777-72322796 None:intergenic 45.0%
CTTAGCCAATTTCTTCGCGT+AGG + chr1.2:72320503-72320522 None:intergenic 45.0%
CTTTCCAACCTGGGAATGTT+CGG - chr1.2:72323361-72323380 MS.gene60811:CDS 45.0%
GCAGATCACCGTGTAATCTA+CGG - chr1.2:72323714-72323733 MS.gene60811:CDS 45.0%
GTACCTGTGGTGTATTCATG+AGG + chr1.2:72321732-72321751 None:intergenic 45.0%
GTCTAGAAAGTGGAAGGAGT+TGG - chr1.2:72321677-72321696 MS.gene60811:intron 45.0%
GTTTCAGCGAGAAATGCGAT+GGG + chr1.2:72320271-72320290 None:intergenic 45.0%
TAAGGAGTTGAAGGTGGAGT+TGG - chr1.2:72320519-72320538 MS.gene60811:intron 45.0%
TATGACAGCATTGCTTGCCA+AGG - chr1.2:72321400-72321419 MS.gene60811:intron 45.0%
TCCTTAGTAGCCACAACAGT+TGG + chr1.2:72323532-72323551 None:intergenic 45.0%
TGCTGTGAGTAGGAATATGG+TGG - chr1.2:72320699-72320718 MS.gene60811:intron 45.0%
TGTTTCCAAACATCCGGCTT+CGG - chr1.2:72320450-72320469 MS.gene60811:intron 45.0%
TTATCAGCATCCTGAAGCAC+CGG + chr1.2:72321551-72321570 None:intergenic 45.0%
TTATTGGGACTGGACCTTCA+GGG - chr1.2:72320548-72320567 MS.gene60811:intron 45.0%
TTTGATGCTATTCTGCCTCC+TGG - chr1.2:72323394-72323413 MS.gene60811:CDS 45.0%
! CACATGTGTCATTGTCGTGT+TGG - chr1.2:72321098-72321117 MS.gene60811:intron 45.0%
! CCAAGAGACGATTTTACCCT+CGG + chr1.2:72320101-72320120 None:intergenic 45.0%
! GAAGTGGTTTGTGGTTGAAG+TGG + chr1.2:72320023-72320042 None:intergenic 45.0%
! GAATATGGTGGAGAGTTTGG+GGG - chr1.2:72320711-72320730 MS.gene60811:intron 45.0%
! GATTTTACCCTCGGTCATTG+TGG + chr1.2:72320092-72320111 None:intergenic 45.0%
! GCCGCTATTGTTGTTGAAGA+AGG - chr1.2:72320223-72320242 MS.gene60811:CDS 45.0%
! GGAATATGGTGGAGAGTTTG+GGG - chr1.2:72320710-72320729 MS.gene60811:intron 45.0%
! GTAGCTGGCCTAACTAAAGT+GGG + chr1.2:72322562-72322581 None:intergenic 45.0%
! GTGCTGGCATGAAAATTTCG+CGG + chr1.2:72320063-72320082 None:intergenic 45.0%
! GTGGAAGGAGTTGGTTGATA+AGG - chr1.2:72321686-72321705 MS.gene60811:intron 45.0%
! GTTGAAGCATTTGCAGCTAC+AGG - chr1.2:72320589-72320608 MS.gene60811:intron 45.0%
! TAGCTGGCCTAACTAAAGTG+GGG + chr1.2:72322561-72322580 None:intergenic 45.0%
! TGGGCTAGATTCTCCTACAA+TGG - chr1.2:72322018-72322037 MS.gene60811:CDS 45.0%
! TGTAGCTGGCCTAACTAAAG+TGG + chr1.2:72322563-72322582 None:intergenic 45.0%
! TTGTTGTTGCAACATGCTGC+TGG - chr1.2:72321233-72321252 MS.gene60811:intron 45.0%
!! CGGTTTCTGGTGTTGAATTG+GGG - chr1.2:72320647-72320666 MS.gene60811:intron 45.0%
!! GCGGTTTCTGGTGTTGAATT+GGG - chr1.2:72320646-72320665 MS.gene60811:intron 45.0%
!! GGCTGTTGTTTCCAAACATC+CGG - chr1.2:72320444-72320463 MS.gene60811:intron 45.0%
!! TGCGGTTTCTGGTGTTGAAT+TGG - chr1.2:72320645-72320664 MS.gene60811:intron 45.0%
!!! GGGTCCCTACTTTTAGAGTT+GGG - chr1.2:72320731-72320750 MS.gene60811:intron 45.0%
AAATGTTAACGAGTGCCCCC+GGG + chr1.2:72323225-72323244 None:intergenic 50.0%
AAATTTCGCGGATCTTGGCG+CGG + chr1.2:72320051-72320070 None:intergenic 50.0%
ACCACCCACTCTTCTGTGTA+TGG - chr1.2:72322770-72322789 MS.gene60811:intron 50.0%
ACCATACACAGAAGAGTGGG+TGG + chr1.2:72322774-72322793 None:intergenic 50.0%
ACCGAAGAAGGTTGTTGCAG+CGG - chr1.2:72320423-72320442 MS.gene60811:intron 50.0%
ACTCAGTTCCACAATGACCG+AGG - chr1.2:72320081-72320100 MS.gene60811:intron 50.0%
AGCAGGAGAAGGAGAAGTAG+AGG + chr1.2:72320356-72320375 None:intergenic 50.0%
AGGAAGAGAGGAACGGTGTT+TGG + chr1.2:72319961-72319980 None:intergenic 50.0%
CAGCCTCATGAATACACCAC+AGG - chr1.2:72321726-72321745 MS.gene60811:intron 50.0%
CATCAACATTGCAGTCGCTG+TGG - chr1.2:72321502-72321521 MS.gene60811:intron 50.0%
CCGAGGGTAAAATCGTCTCT+TGG - chr1.2:72320098-72320117 MS.gene60811:intron 50.0%
CTCAGTTCCACAATGACCGA+GGG - chr1.2:72320082-72320101 MS.gene60811:intron 50.0%
CTTCAACAACAATAGCGGCG+AGG + chr1.2:72320222-72320241 None:intergenic 50.0%
GAAATGTTAACGAGTGCCCC+CGG + chr1.2:72323226-72323245 None:intergenic 50.0%
GAAGGGGACAAACTCTCCAA+AGG - chr1.2:72320130-72320149 MS.gene60811:intron 50.0%
GCCAACTGTTGTGGCTACTA+AGG - chr1.2:72323528-72323547 MS.gene60811:CDS 50.0%
GCTACTAAGGATGGTCGCAT+TGG - chr1.2:72323541-72323560 MS.gene60811:CDS 50.0%
GCTGACCATACACAGAAGAG+TGG + chr1.2:72322778-72322797 None:intergenic 50.0%
GGTGCTTCAGGATGCTGATA+AGG - chr1.2:72321550-72321569 MS.gene60811:intron 50.0%
GGTTGAGATTCTACAGGCGT+GGG + chr1.2:72320406-72320425 None:intergenic 50.0%
GGTTTGTGGTTGAAGTGGTG+CGG + chr1.2:72320018-72320037 None:intergenic 50.0%
GTCATTGTGGAACTGAGTGC+TGG + chr1.2:72320079-72320098 None:intergenic 50.0%
TAGGGGGCAATTATGGCAGT+TGG - chr1.2:72323496-72323515 MS.gene60811:CDS 50.0%
TGGTAACAGAGGGGGGAAAT+AGG + chr1.2:72322655-72322674 None:intergenic 50.0%
TGTCGCACACCAACTCATGT+CGG - chr1.2:72321121-72321140 MS.gene60811:intron 50.0%
! TGGTGTTGAATTGGGGACTG+TGG - chr1.2:72320654-72320673 MS.gene60811:intron 50.0%
!! AAGACCCTTAAAGAGTGCCC+CGG - chr1.2:72323204-72323223 MS.gene60811:CDS 50.0%
!! GAGAGCATCAAGTGCATCAG+TGG + chr1.2:72320767-72320786 None:intergenic 50.0%
!! GGTATGCTTAAAGAGTGCCC+CGG + chr1.2:72323098-72323117 None:intergenic 50.0%
!! GTATGCTTAAAGAGTGCCCC+GGG + chr1.2:72323097-72323116 None:intergenic 50.0%
!! TATGCTTAAAGAGTGCCCCG+GGG + chr1.2:72323096-72323115 None:intergenic 50.0%
!!! GGGGTCCCTACTTTTAGAGT+TGG - chr1.2:72320730-72320749 MS.gene60811:intron 50.0%
AACGCCGAACATTCCCAGGT+TGG + chr1.2:72323368-72323387 None:intergenic 55.0%
AATGTTAACGAGTGCCCCCG+GGG + chr1.2:72323224-72323243 None:intergenic 55.0%
ACGGTGGAGGAAGAGAGGAA+CGG + chr1.2:72319968-72319987 None:intergenic 55.0%
AGATTCTACAGGCGTGGGTG+CGG + chr1.2:72320401-72320420 None:intergenic 55.0%
ATGGAGTCGACACGTGTAGC+TGG + chr1.2:72322577-72322596 None:intergenic 55.0%
CCAGAAACCGCAGTCTTCAC+CGG + chr1.2:72320637-72320656 None:intergenic 55.0%
CGGTTGAGATTCTACAGGCG+TGG + chr1.2:72320407-72320426 None:intergenic 55.0%
GATCAACGCCGAACATTCCC+AGG + chr1.2:72323372-72323391 None:intergenic 55.0%
GCAGTCGCTGTGGCTATAGA+TGG - chr1.2:72321512-72321531 MS.gene60811:intron 55.0%
GCCGCTGCAACAACCTTCTT+CGG + chr1.2:72320427-72320446 None:intergenic 55.0%
GGTTGAAGTGGTGCGGTAGA+GGG + chr1.2:72320011-72320030 None:intergenic 55.0%
GTCGCTGTGGCTATAGATGG+TGG - chr1.2:72321515-72321534 MS.gene60811:intron 55.0%
GTCTCGTGTCCGACATGAGT+TGG + chr1.2:72321133-72321152 None:intergenic 55.0%
TCCAAACATCCGGCTTCGGA+GGG - chr1.2:72320454-72320473 MS.gene60811:intron 55.0%
TCTTGTTAACGAGTGCCCCC+CGG - chr1.2:72323076-72323095 MS.gene60811:CDS 55.0%
TGCGATGGGAGATCCAACAG+CGG + chr1.2:72320257-72320276 None:intergenic 55.0%
TGGTTGAAGTGGTGCGGTAG+AGG + chr1.2:72320012-72320031 None:intergenic 55.0%
TTCCAAACATCCGGCTTCGG+AGG - chr1.2:72320453-72320472 MS.gene60811:intron 55.0%
!! AGACCCTTAAAGAGTGCCCC+GGG - chr1.2:72323205-72323224 MS.gene60811:CDS 55.0%
!! AGCTACACGTGTCGACTCCA+TGG - chr1.2:72322576-72322595 MS.gene60811:intron 55.0%
!! AGCTACAGGGAGTGTTGCAG+CGG - chr1.2:72320603-72320622 MS.gene60811:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG + chr1.2:72323095-72323114 None:intergenic 55.0%
AAACATCCGGCTTCGGAGGG+AGG - chr1.2:72320457-72320476 MS.gene60811:intron 60.0%
AACATCCGGCTTCGGAGGGA+GGG - chr1.2:72320458-72320477 MS.gene60811:intron 60.0%
AGGCTGCAGCTGCTTAGCTC+TGG + chr1.2:72321712-72321731 None:intergenic 60.0%
CCGGTGAAGACTGCGGTTTC+TGG - chr1.2:72320634-72320653 MS.gene60811:intron 60.0%
CTTGTTAACGAGTGCCCCCC+GGG - chr1.2:72323077-72323096 MS.gene60811:CDS 60.0%
GAAGGTGATGTCGCCGCTGT+TGG - chr1.2:72320241-72320260 MS.gene60811:intron 60.0%
GATTCTACAGGCGTGGGTGC+GGG + chr1.2:72320400-72320419 None:intergenic 60.0%
GCGGACGACGAAGTGGTTTG+TGG + chr1.2:72320032-72320051 None:intergenic 60.0%
TCCCTCCGAAGCCGGATGTT+TGG + chr1.2:72320458-72320477 None:intergenic 60.0%
TGAAGTGGTGCGGTAGAGGG+AGG + chr1.2:72320008-72320027 None:intergenic 60.0%
TGGGACTGGACCTTCAGGGA+GGG - chr1.2:72320552-72320571 MS.gene60811:intron 60.0%
TTAGCCACGACCCTCCCTGA+AGG + chr1.2:72320565-72320584 None:intergenic 60.0%
TTCGGAGGGAGGGAAGAGAG+TGG - chr1.2:72320468-72320487 MS.gene60811:intron 60.0%
TTGGGACTGGACCTTCAGGG+AGG - chr1.2:72320551-72320570 MS.gene60811:intron 60.0%
TTGTTAACGAGTGCCCCCCG+GGG - chr1.2:72323078-72323097 MS.gene60811:CDS 60.0%
!! ACCCTTAAAGAGTGCCCCGG+GGG - chr1.2:72323207-72323226 MS.gene60811:CDS 60.0%
!! GACCCTTAAAGAGTGCCCCG+GGG - chr1.2:72323206-72323225 MS.gene60811:CDS 60.0%
!! TACAGGGAGTGTTGCAGCGG+TGG - chr1.2:72320606-72320625 MS.gene60811:intron 60.0%
!! TGCTTAAAGAGTGCCCCGGG+GGG + chr1.2:72323094-72323113 None:intergenic 60.0%
CAAGGCTACTGCTCTCGCGC+TGG - chr1.2:72321418-72321437 MS.gene60811:intron 65.0%
CAGCGCGAGAGCAGTAGCCT+TGG + chr1.2:72321420-72321439 None:intergenic 65.0%
CTCTTCCCTCCCTCCGAAGC+CGG + chr1.2:72320466-72320485 None:intergenic 65.0%
CTTGAAGTCGGGTGCGGCTG+TGG - chr1.2:72322426-72322445 MS.gene60811:intron 65.0%
GGAGGACGGTGGAGGAAGAG+AGG + chr1.2:72319973-72319992 None:intergenic 65.0%
GGAGGGAGGGAAGAGAGTGG+TGG - chr1.2:72320471-72320490 MS.gene60811:intron 65.0%
TCTTGGCGCGGACGACGAAG+TGG + chr1.2:72320039-72320058 None:intergenic 65.0%
TGGACCTTCAGGGAGGGTCG+TGG - chr1.2:72320558-72320577 MS.gene60811:intron 65.0%
TGGTGCGGTAGAGGGAGGTG+CGG + chr1.2:72320003-72320022 None:intergenic 65.0%
! GCCCCCGGGGCACTCTTTAA+GGG + chr1.2:72323211-72323230 None:intergenic 65.0%
! GCGGGTGAAGGTGCAGGTGA+GGG + chr1.2:72320382-72320401 None:intergenic 65.0%
! GGTAGAGGGAGGTGCGGTTG+CGG + chr1.2:72319997-72320016 None:intergenic 65.0%
! GGTGAGGGTGCAGCAGGAGA+AGG + chr1.2:72320367-72320386 None:intergenic 65.0%
! TGCCCCCGGGGCACTCTTTA+AGG + chr1.2:72323212-72323231 None:intergenic 65.0%
! TGCGGGTGAAGGTGCAGGTG+AGG + chr1.2:72320383-72320402 None:intergenic 65.0%
!! AGGGAGTGTTGCAGCGGTGG+CGG - chr1.2:72320609-72320628 MS.gene60811:intron 65.0%
ACAGGCGTGGGTGCGGGTGA+AGG + chr1.2:72320394-72320413 None:intergenic 70.0%
GGCGGAGCCGGTGAAGACTG+CGG - chr1.2:72320627-72320646 MS.gene60811:intron 70.0%
! AGAGGGAGGTGCGGTTGCGG+CGG + chr1.2:72319994-72320013 None:intergenic 70.0%
! GGTGCAGGTGAGGGTGCAGC+AGG + chr1.2:72320373-72320392 None:intergenic 70.0%
! GTGGGTGCGGGTGAAGGTGC+AGG + chr1.2:72320388-72320407 None:intergenic 70.0%
!! TGTTGCAGCGGTGGCGGAGC+CGG - chr1.2:72320615-72320634 MS.gene60811:intron 70.0%
GGTGCGGTTGCGGCGGAGGA+CGG + chr1.2:72319987-72320006 None:intergenic 75.0%
GTTGCGGCGGAGGACGGTGG+AGG + chr1.2:72319981-72320000 None:intergenic 75.0%
! GCGGTTGCGGCGGAGGACGG+TGG + chr1.2:72319984-72320003 None:intergenic 80.0%
!! GGGAGGTGCGGTTGCGGCGG+AGG + chr1.2:72319991-72320010 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 72319944 72323806 72319944 ID=MS.gene60811
chr1.2 mRNA 72319944 72323806 72319944 ID=MS.gene60811.t1;Parent=MS.gene60811
chr1.2 exon 72322955 72323806 72322955 ID=MS.gene60811.t1.exon1;Parent=MS.gene60811.t1
chr1.2 CDS 72322955 72323806 72322955 ID=cds.MS.gene60811.t1;Parent=MS.gene60811.t1
chr1.2 exon 72322179 72322370 72322179 ID=MS.gene60811.t1.exon2;Parent=MS.gene60811.t1
chr1.2 CDS 72322179 72322370 72322179 ID=cds.MS.gene60811.t1;Parent=MS.gene60811.t1
chr1.2 exon 72322003 72322090 72322003 ID=MS.gene60811.t1.exon3;Parent=MS.gene60811.t1
chr1.2 CDS 72322003 72322090 72322003 ID=cds.MS.gene60811.t1;Parent=MS.gene60811.t1
chr1.2 exon 72320330 72320400 72320330 ID=MS.gene60811.t1.exon4;Parent=MS.gene60811.t1
chr1.2 CDS 72320330 72320400 72320330 ID=cds.MS.gene60811.t1;Parent=MS.gene60811.t1
chr1.2 exon 72320168 72320251 72320168 ID=MS.gene60811.t1.exon5;Parent=MS.gene60811.t1
chr1.2 CDS 72320168 72320251 72320168 ID=cds.MS.gene60811.t1;Parent=MS.gene60811.t1
chr1.2 exon 72319944 72320048 72319944 ID=MS.gene60811.t1.exon6;Parent=MS.gene60811.t1
chr1.2 CDS 72319944 72320048 72319944 ID=cds.MS.gene60811.t1;Parent=MS.gene60811.t1
Gene Sequence

>MS.gene60811

ATGTCTCAGCTTCTCCAAACACCGTTCCTCTCTTCCTCCACCGTCCTCCGCCGCAACCGCACCTCCCTCTACCGCACCACTTCAACCACAAACCACTTCGTCGTCCGCGCCAAGATCCGCGAAATTTTCATGCCAGCACTCAGTTCCACAATGACCGAGGGTAAAATCGTCTCTTGGATCAAATCAGAAGGGGACAAACTCTCCAAAGGCGATAGTGTCGTTGTTGTTGAATCCGATAAAGCTGACATGGATGTCGAAACTTTCTACGACGGTATCCTCGCCGCTATTGTTGTTGAAGAAGGTGATGTCGCCGCTGTTGGATCTCCCATCGCATTTCTCGCTGAAACTGAAGAGGAAATTGAATTAGCCAAGTCCAAAGCTCTTTCATCTTCATCTTCTTCATCATCATCCTCTACTTCTCCTTCTCCTGCTGCACCCTCACCTGCACCTTCACCCGCACCCACGCCTGTAGAATCTCAACCGAAGAAGGTTGTTGCAGCGGCTGTTGTTTCCAAACATCCGGCTTCGGAGGGAGGGAAGAGAGTGGTGGCATCACCCTACGCGAAGAAATTGGCTAAGGAGTTGAAGGTGGAGTTGGGACAAATTATTGGGACTGGACCTTCAGGGAGGGTCGTGGCTAAAGATGTTGAAGCATTTGCAGCTACAGGGAGTGTTGCAGCGGTGGCGGAGCCGGTGAAGACTGCGGTTTCTGGTGTTGAATTGGGGACTGTGGTGCCGTTTACGACAATGCAGAATGCTGTGAGTAGGAATATGGTGGAGAGTTTGGGGGTCCCTACTTTTAGAGTTGGGTATACTATTACCACTGATGCACTTGATGCTCTCTACAAGAAGGTGAATTTTTTGTTATTAATTTCATTATAATTCTCATACTGATTACATTTGATGCTAGCTAGATGACTATCACATTGGTTCTTTGGACATTATATATGCAATTACATAATTCACCATTGTTGGGATTTTTAATAAATGGGTAGTTTACTGATCTTTATAGAACACGAATGATTAGGGGAAAAAGTGTTGGCAAAGAAACTATCAGCAAATTTTAGCAAGTGTTGGCAAACACGGACACTAGACACAACACTAACACGTTGGCATTTGTAATAATTTGAGAAAATGAAATAATTTAATGTAACCACATGTGTCATTGTCGTGTTGGTGTCGCACACCAACTCATGTCGGACACGAGACACACATTTAATATGAACTGTAAATGCTACATAGATATTAGATGCTAGCCATGTATGATTGATTGCATGTTCTTCATGAAGTTGTTGTTGCAACATGCTGCTGGCAGTTTATAATAGTTTGATGTCTAAGTTTTTCAATTTATTCTGTGAACACCTTAAACTTGTAGACTCATGTTCAAACTGTTTTATACATGTTTATTGATTTTGTTTTATTTTATAAAATATCAGATCAAGTCAAAAGGAGTTACTATGACAGCATTGCTTGCCAAGGCTACTGCTCTCGCGCTGGCTAAACACCCTGTTATAAACTCTAGTTGTAGGGATGGTAATAGCTTTACATATAATAGCAGCATCAACATTGCAGTCGCTGTGGCTATAGATGGTGGACTTATTACACCGGTGCTTCAGGATGCTGATAAGGTGCTTGATACTCTATTTTGAGCTGCTTATAATCTAACATAAAATGGTGTTCACCCTGTTAAAAAGGTTTATTTGACGTATATTATAGGTTGATGTCTATTCATTGTCTAGAAAGTGGAAGGAGTTGGTTGATAAGGCCAGAGCTAAGCAGCTGCAGCCTCATGAATACACCACAGGTACAGTAATTATCTATTTATTAGGATTTATTTGATGTCTATGAACTTTCCAATTTATCATGGAATCCTTAAATTTGTGGGTAGGGACTTAGGGCGATTAATAATTAACGTAGTTTGAGTCTTATACTGTATGCATATAATGTATCTTTGTCCAAAAAATTAAAAAAATGGCTTGGAGCTTTCAAACATAAATGACAGCAGCTGAGTTCATGATATGTGTATAGAATTGGTTAAATCCAGTCTACAAAACCTACTTGGTTTTATTCTTCTTGGGCTAGATTCTCCTACAATGGTGAAATCAATGACTGACAAAAATTGATAAAATCCTTGAAGAAAAGTTTGGCTAACTTTGCATTTGAAGATTGCATTTGAGTCGTTGTCAAATTTTATTGAGTGCTAAGCTATTTAATACGAGGGGTGGTGATTATGATGACAAAAAATTTGTATACATCAACTAACTTTCTAGAGGTCCTGATGATGTTCCTTAGCTGTATATTTTGAGGTTTACAATTTGAAGAGTGCTTTAAGTTAAGGTTGGAAGAATAAATCTGGGTTTGAAAGAATTAGCAGGAGAGCTCATGTGGTTAGATCATGCCTTAAACTAGATTTGTTAATATTGCGAGAACAGGGTTTACAAAGCATGAAATTAATGATTGGAAAAGTTCACTGAAGAGATAACTTGAAGTCGGGTGCGGCTGTGGTCATAACATTCAACAGTATTGTCTGTGGTCAGTTACAAATTGGAGAGAATTACAAAAAACACCTTACAATTTCATAAACAATAAAAATCACGACCAATGTCTTATCTTACCCCACTTTAGTTAGGCCAGCTACACGTGTCGACTCCATGGAAGACCAAAGTTTCAATAAAATCATTTAACATAAGGTCTTTTTAAAAGCTTTTCCTATTTCCCCCCTCTGTTACCATTTTTAGTTTGGAAAATGCTTATCATTACGAGAGAGTTACACAAGAAACTCAAGAATCCTACATGGCTGCCTGTATATAACACTTACACATAATAACCACCCACTCTTCTGTGTATGGTCAGCCAGAACTTGATTGGTCAAATATTTAATTTAAGGATTCTTCTCTTTCTTGTATAAATCCTTCACAACAAATAGCGGTACTCTTTTAGTTTTTGCATCTTAATATTTCCAGGGAAGTTTATGGTACTATTGTTTCCCTCCTTTTTTTTATAGACTATAAATTATTCCTAGTACAATTCTACCTCGTATATTCGCTTTATTTGTTTCTGCCATGGTAATCTAGAATAAACAAGTTAAACATTATACTTTCTACCAAAAGAACAAGCTATATAATGTTTGGGTCTTGTTAACGAGTGCCCCCCGGGGCACTCTTTAAGCATACCAGATTAGGAAATTATTCTTTAAAAGATTCAAATAGTTCAATTTCCAATGCATTAAATACATAACTTTTCATAAAAAGTTACTATTTAAGACCCTTAAAGAGTGCCCCGGGGGCACTCGTTAACATTTCCCATAATGTTTTTACAGTTGAATTTTGACATTCAATTGGGCTAATTCAAAGACTTTTTTCTTCTGATATTTTCCCTGCTTCACTGATTTCTGTTGTTTCTCTAGGTACTTTCACTCTTTCCAACCTGGGAATGTTCGGCGTTGATCGCTTTGATGCTATTCTGCCTCCTGGAACTGTGAGTAATCTTATTTGTGATCTAATCGAAAGTGATGGCGTACGTGAATTTGATTGTTTTGTGGGTTTATTTTTGTAGGGGGCAATTATGGCAGTTGGAACATCACAGCCAACTGTTGTGGCTACTAAGGATGGTCGCATTGGCATGAAGAATCAAATGCAGGTATGAGTGTTCAGACATTTGTATATGTTGGAGTATGACTTATTTATTTTTGGTTAAAGAATCGTAAATCGATATCCAGACTTCTGTTCTTTTATAACTGAAGGAATGCAAATTTGCAGGTCAATGTTACAGCAGATCACCGTGTAATCTACGGTTCTGATCTAGCTCTGTTCTTGCAAACTCTGTCTCAGATTATTGAGGACCCTAAAGATCTTACTTTCTAG
Protein sequence

>MS.gene60811.t1

MSQLLQTPFLSSSTVLRRNRTSLYRTTSTTNHFVVRAKIREIFMPALSSTMTEGKIVSWIKSEGDKLSKGDSVVVVESDKADMDVETFYDGILAAIVVEEGDVAAVGSPIAFLAETEEEIELAKSKALSSSSSSSSSSTSPSPAAPSPAPSPAPTPVESQPKKVVAAAVVSKHPASEGGKRVVASPYAKKLAKELKVELGQIIGTGPSGRVVAKDVEAFAATGSVAAVAEPVKTAVSGVELGTVVPFTTMQNAVSRNMVESLGVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALAKHPVINSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQDADKVDVYSLSRKWKELVDKARAKQLQPHEYTTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGTSQPTVVATKDGRIGMKNQMQVNVTADHRVIYGSDLALFLQTLSQIIEDPKDLTF