AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61066

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61066.t1 MTR_8g065030 98.918 462 4 1 1 462 1 461 0.0 936
MS.gene61066.t1 MTR_7g091850 46.739 368 193 3 64 429 75 441 4.16e-117 351
MS.gene61066.t1 MTR_2g103410 45.550 382 206 2 64 443 58 439 1.21e-115 347
MS.gene61066.t1 MTR_1g052315 46.049 367 194 4 66 430 65 429 1.99e-115 347
MS.gene61066.t1 MTR_2g060350 44.595 370 198 6 64 429 73 439 4.55e-109 330
MS.gene61066.t1 MTR_6g005630 42.416 389 215 5 54 441 34 414 2.01e-106 323
MS.gene61066.t1 MTR_3g030540 44.800 375 193 4 41 409 46 412 3.27e-103 315
MS.gene61066.t1 MTR_4g094715 40.609 394 221 6 64 446 64 455 1.53e-101 311
MS.gene61066.t1 MTR_1g086390 39.901 406 222 8 64 456 80 476 3.81e-101 311
MS.gene61066.t1 MTR_7g110050 40.731 383 213 7 64 434 66 446 3.26e-99 305
MS.gene61066.t1 MTR_7g091840 45.714 315 167 3 64 375 64 377 3.02e-96 295
MS.gene61066.t1 MTR_5g034090 40.106 379 197 6 64 415 120 495 4.72e-93 291
MS.gene61066.t1 MTR_8g065010 38.257 413 221 7 53 434 95 504 2.33e-92 290
MS.gene61066.t1 MTR_6g005630 39.846 389 202 7 54 441 34 391 2.83e-92 285
MS.gene61066.t1 MTR_2g032710 40.204 393 222 6 53 434 55 445 2.10e-91 285
MS.gene61066.t1 MTR_5g033680 33.632 446 272 6 1 436 7 438 1.48e-87 275
MS.gene61066.t1 MTR_2g103650 38.843 363 214 5 66 421 29 390 3.76e-86 270
MS.gene61066.t1 MTR_7g113910 45.031 322 142 5 125 443 74 363 1.37e-85 267
MS.gene61066.t1 MTR_3g084380 39.655 348 195 6 69 410 25 363 9.25e-85 266
MS.gene61066.t1 MTR_4g083660 40.318 377 205 11 66 434 10 374 8.35e-83 260
MS.gene61066.t1 MTR_8g009810 39.737 380 220 7 54 430 24 397 2.53e-82 259
MS.gene61066.t1 MTR_3g438050 37.401 377 223 7 64 434 26 395 2.88e-80 254
MS.gene61066.t1 MTR_4g084050 36.911 382 217 9 66 434 24 394 2.36e-78 249
MS.gene61066.t1 MTR_6g028080 35.185 378 225 10 66 434 31 397 2.60e-78 249
MS.gene61066.t1 MTR_2g049400 38.874 373 216 10 65 434 28 391 3.36e-78 249
MS.gene61066.t1 MTR_3g084360 35.359 362 220 7 66 421 25 378 5.20e-76 243
MS.gene61066.t1 MTR_3g054320 35.714 378 224 7 69 440 34 398 2.26e-75 242
MS.gene61066.t1 MTR_2g103410 46.538 260 138 1 64 322 58 317 3.05e-75 239
MS.gene61066.t1 MTR_5g043350 36.418 335 201 5 66 395 30 357 3.31e-74 239
MS.gene61066.t1 MTR_2g435640 38.462 351 205 7 61 405 49 394 5.74e-74 239
MS.gene61066.t1 MTR_0157s0060 36.997 373 212 7 70 434 3 360 1.54e-73 236
MS.gene61066.t1 MTR_4g034020 36.997 373 212 7 70 434 3 360 1.54e-73 236
MS.gene61066.t1 MTR_8g030930 33.684 380 231 8 64 431 26 396 2.59e-71 231
MS.gene61066.t1 MTR_8g010070 34.392 378 222 11 64 434 30 388 2.77e-69 226
MS.gene61066.t1 MTR_2g029170 38.551 345 193 11 97 434 29 361 1.66e-67 220
MS.gene61066.t1 MTR_4g120320 35.279 377 230 9 61 429 48 418 3.82e-67 221
MS.gene61066.t1 MTR_8g010090 33.777 376 226 9 64 434 30 387 1.13e-66 219
MS.gene61066.t1 MTR_1g088160 35.356 379 226 10 64 431 34 404 1.78e-66 219
MS.gene61066.t1 MTR_8g010040 35.677 384 224 9 55 433 22 387 1.88e-66 218
MS.gene61066.t1 MTR_8g010110 33.598 378 228 8 64 436 30 389 3.77e-66 217
MS.gene61066.t1 MTR_5g034090 39.860 286 144 4 64 322 120 404 4.68e-66 218
MS.gene61066.t1 MTR_1g012390 35.185 378 227 10 66 435 29 396 8.38e-66 217
MS.gene61066.t1 MTR_2g058640 35.328 351 214 5 63 406 23 367 9.96e-64 211
MS.gene61066.t1 MTR_2g058840 34.711 363 216 7 64 416 24 375 1.22e-63 212
MS.gene61066.t1 MTR_8g010080 32.620 374 232 7 64 434 30 386 1.49e-63 211
MS.gene61066.t1 MTR_2g058670 34.795 365 215 8 64 416 24 377 3.33e-63 211
MS.gene61066.t1 MTR_1g013740 31.362 389 235 10 54 435 26 389 1.28e-61 206
MS.gene61066.t1 MTR_8g008765 34.347 329 197 5 64 389 30 342 1.16e-60 202
MS.gene61066.t1 MTR_7g035415 39.796 294 159 6 64 351 39 320 2.07e-60 201
MS.gene61066.t1 MTR_5g063430 34.219 301 182 6 64 359 24 313 2.02e-58 195
MS.gene61066.t1 MTR_1g013730 30.670 388 237 10 54 434 18 380 4.68e-58 196
MS.gene61066.t1 MTR_5g097860 35.185 324 199 8 64 382 24 341 6.26e-55 187
MS.gene61066.t1 MTR_8g010050 30.688 378 202 12 64 434 30 354 2.85e-53 182
MS.gene61066.t1 MTR_8g077320 37.086 302 145 7 64 351 32 302 8.89e-53 181
MS.gene61066.t1 MTR_8g008700 34.201 269 159 4 123 389 13 265 3.07e-46 162
MS.gene61066.t1 MTR_8g031180 39.423 208 117 3 208 409 73 277 7.81e-42 150
MS.gene61066.t1 MTR_2g100040 30.141 355 189 10 56 404 16 317 4.72e-40 147
MS.gene61066.t1 MTR_4g124980 26.037 434 268 15 63 456 72 492 4.98e-28 116
MS.gene61066.t1 MTR_2g042740 25.056 447 282 16 47 456 42 472 8.79e-26 110
MS.gene61066.t1 MTR_7g110710 29.947 374 217 14 65 405 43 404 7.28e-25 107
MS.gene61066.t1 MTR_7g110710 29.947 374 217 14 65 405 43 404 9.39e-25 107
MS.gene61066.t1 MTR_4g120730 25.128 390 250 14 65 422 40 419 6.63e-23 101
MS.gene61066.t1 MTR_1g086030 29.532 342 204 12 65 377 82 415 1.64e-22 100
MS.gene61066.t1 MTR_1g100040 27.202 386 239 13 51 406 45 418 2.87e-21 96.7
MS.gene61066.t1 MTR_2g435340 24.808 391 250 13 65 422 37 416 3.79e-21 95.9
MS.gene61066.t1 MTR_1g100060 27.062 388 237 14 51 406 82 455 4.29e-21 96.3
MS.gene61066.t1 MTR_3g096330 25.000 400 251 13 62 426 73 458 2.19e-20 94.7
MS.gene61066.t1 MTR_1g100050 27.062 388 237 14 51 406 39 412 2.31e-20 94.0
MS.gene61066.t1 MTR_7g088550 26.287 369 230 13 70 406 55 413 4.80e-20 92.8
MS.gene61066.t1 MTR_8g098840 25.316 395 250 15 66 426 45 428 9.67e-20 92.0
MS.gene61066.t1 MTR_1g086030 28.522 291 175 10 115 377 26 311 1.12e-18 88.2
MS.gene61066.t1 MTR_5g090160 25.594 379 239 11 65 411 44 411 1.28e-18 88.6
MS.gene61066.t1 MTR_8g028725 25.240 416 262 13 65 444 55 457 1.63e-18 88.2
MS.gene61066.t1 MTR_7g078680 25.185 405 254 12 66 434 56 447 2.57e-18 87.8
MS.gene61066.t1 MTR_2g435340 25.260 289 197 8 152 427 74 356 4.15e-17 83.2
MS.gene61066.t1 MTR_1g099850 26.829 369 227 13 70 406 60 417 7.83e-17 83.2
MS.gene61066.t1 MTR_3g449590 23.810 378 246 12 65 411 47 413 5.04e-16 80.5
MS.gene61066.t1 MTR_8g007320 38.571 70 43 0 361 430 22 91 1.61e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61066.t1 AT1G23460 67.778 450 139 3 14 462 16 460 0.0 627
MS.gene61066.t1 AT1G23460 68.636 440 133 2 24 462 1 436 0.0 623
MS.gene61066.t1 AT1G70500 63.617 470 161 6 1 462 1 468 0.0 616
MS.gene61066.t1 AT1G80170 47.927 386 195 4 64 446 52 434 7.91e-126 373
MS.gene61066.t1 AT3G07970 47.246 345 177 4 66 408 72 413 1.01e-111 337
MS.gene61066.t1 AT3G57510 45.652 368 190 6 65 429 68 428 5.96e-109 329
MS.gene61066.t1 AT2G41850 46.467 368 187 5 65 429 68 428 2.98e-105 320
MS.gene61066.t1 AT4G01890 43.210 405 212 9 53 441 53 455 7.21e-105 320
MS.gene61066.t1 AT1G02460 41.902 389 208 8 64 436 88 474 1.55e-104 320
MS.gene61066.t1 AT1G56710 42.119 387 208 8 61 434 44 427 1.59e-102 313
MS.gene61066.t1 AT5G14650 40.150 401 226 7 57 453 43 433 1.27e-100 308
MS.gene61066.t1 AT1G48100 39.791 382 217 6 64 434 79 458 7.61e-99 305
MS.gene61066.t1 AT1G10640 39.851 404 210 7 61 434 115 515 3.17e-96 300
MS.gene61066.t1 AT3G26610 36.652 442 258 8 5 440 9 434 8.68e-92 286
MS.gene61066.t1 AT1G60590 37.717 403 215 7 66 435 124 523 3.61e-91 287
MS.gene61066.t1 AT3G15720 39.633 381 210 8 65 437 23 391 7.20e-89 278
MS.gene61066.t1 AT3G15720 39.633 381 210 8 65 437 24 392 7.25e-89 278
MS.gene61066.t1 AT3G15720 39.108 381 209 9 65 437 23 388 3.82e-86 271
MS.gene61066.t1 AT2G43890 39.084 371 216 8 66 434 30 392 1.37e-85 268
MS.gene61066.t1 AT4G35670 40.230 348 197 4 66 410 25 364 9.64e-85 266
MS.gene61066.t1 AT1G80170 48.462 260 133 1 64 322 52 311 1.02e-84 263
MS.gene61066.t1 AT2G43880 38.798 366 215 7 66 429 32 390 3.59e-83 262
MS.gene61066.t1 AT1G05660 37.067 375 225 9 64 435 27 393 5.76e-83 261
MS.gene61066.t1 AT1G05650 36.533 375 229 7 63 435 26 393 8.61e-82 258
MS.gene61066.t1 AT2G43870 40.426 376 204 12 66 434 22 384 1.20e-81 258
MS.gene61066.t1 AT1G65570 41.176 374 209 9 65 434 31 397 1.99e-81 257
MS.gene61066.t1 AT5G27530 36.719 384 208 4 64 444 52 403 6.11e-81 258
MS.gene61066.t1 AT3G59850 40.214 373 211 10 66 434 24 388 6.58e-81 256
MS.gene61066.t1 AT3G59850 40.214 373 211 10 66 434 68 432 1.48e-80 256
MS.gene61066.t1 AT5G44840 38.462 351 204 6 64 410 23 365 4.13e-78 248
MS.gene61066.t1 AT1G80140 38.576 337 189 7 101 429 6 332 6.58e-78 246
MS.gene61066.t1 AT3G15720 39.349 338 186 7 107 437 3 328 6.73e-77 245
MS.gene61066.t1 AT2G43860 38.770 374 217 10 65 434 33 398 7.19e-76 243
MS.gene61066.t1 AT1G17150 36.074 377 228 9 64 434 32 401 2.09e-73 237
MS.gene61066.t1 AT2G15450 34.465 383 232 10 64 435 30 404 9.83e-73 235
MS.gene61066.t1 AT1G78400 34.828 379 231 8 61 431 31 401 1.73e-72 234
MS.gene61066.t1 AT2G15460 34.483 377 229 9 64 429 30 399 5.02e-72 233
MS.gene61066.t1 AT2G33160 36.292 383 223 9 60 430 27 400 1.27e-71 239
MS.gene61066.t1 AT2G15470 34.204 383 233 10 64 435 30 404 5.02e-71 231
MS.gene61066.t1 AT1G43080 34.417 369 224 9 64 421 30 391 1.32e-70 229
MS.gene61066.t1 AT2G26620 34.474 380 234 8 64 435 30 402 2.11e-70 229
MS.gene61066.t1 AT5G17200 35.230 369 205 7 60 405 34 391 5.69e-70 228
MS.gene61066.t1 AT4G18180 36.901 355 212 7 64 410 38 388 7.15e-70 228
MS.gene61066.t1 AT1G43090 34.146 369 225 9 64 421 30 391 9.06e-70 228
MS.gene61066.t1 AT1G43100 33.875 369 226 9 64 421 30 391 6.87e-69 226
MS.gene61066.t1 AT4G13760 33.594 384 234 11 64 435 30 404 1.11e-68 224
MS.gene61066.t1 AT5G14650 41.199 267 152 3 57 322 43 305 1.51e-67 219
MS.gene61066.t1 AT5G44830 37.898 314 175 5 99 410 11 306 8.37e-67 217
MS.gene61066.t1 AT2G43880 39.933 298 170 7 66 361 32 322 1.20e-66 217
MS.gene61066.t1 AT1G02790 34.160 363 223 8 47 406 34 383 6.44e-66 218
MS.gene61066.t1 AT2G40310 33.158 380 237 9 66 435 32 404 1.47e-65 216
MS.gene61066.t1 AT3G07840 33.684 380 243 5 66 441 22 396 1.77e-65 216
MS.gene61066.t1 AT3G14040 35.433 381 235 8 56 431 62 436 1.24e-63 213
MS.gene61066.t1 AT4G32380 32.804 378 238 7 52 420 12 382 4.12e-63 211
MS.gene61066.t1 AT5G48140 34.302 344 214 6 78 416 34 370 2.41e-61 205
MS.gene61066.t1 AT3G07850 34.946 372 231 8 65 431 70 435 1.24e-60 204
MS.gene61066.t1 AT4G35670 39.245 265 153 2 146 410 1 257 3.62e-59 196
MS.gene61066.t1 AT5G39910 30.239 377 199 6 64 435 35 352 7.10e-59 198
MS.gene61066.t1 AT3G07830 31.476 359 235 6 78 431 34 386 1.25e-58 198
MS.gene61066.t1 AT4G32370 35.756 344 203 9 35 367 2 338 1.08e-56 191
MS.gene61066.t1 AT3G07820 31.198 359 236 6 63 416 18 370 3.15e-56 191
MS.gene61066.t1 AT4G32375 34.266 286 178 3 137 419 3 281 5.84e-54 186
MS.gene61066.t1 AT4G32380 34.395 314 192 7 52 360 12 316 1.07e-46 167
MS.gene61066.t1 AT3G62110 30.836 347 194 14 65 377 43 377 8.96e-27 112
MS.gene61066.t1 AT3G62110 30.836 347 194 14 65 377 43 377 8.96e-27 112
MS.gene61066.t1 AT2G23900 25.575 391 243 13 67 421 58 436 1.49e-24 106
MS.gene61066.t1 AT3G42950 25.000 428 267 16 63 454 64 473 6.68e-23 101
MS.gene61066.t1 AT1G19170 24.048 420 268 14 45 429 72 475 9.07e-22 98.2
MS.gene61066.t1 AT5G41870 28.158 380 218 14 64 405 44 406 1.16e-21 97.4
MS.gene61066.t1 AT4G23820 27.415 383 234 14 65 415 41 411 2.22e-21 96.7
MS.gene61066.t1 AT3G48950 24.661 369 234 10 70 405 50 407 2.61e-21 96.7
MS.gene61066.t1 AT5G49215 24.747 396 257 12 44 409 22 406 1.40e-20 94.4
MS.gene61066.t1 AT5G49215 24.747 396 257 12 44 409 24 408 1.49e-20 94.4
MS.gene61066.t1 AT4G33440 25.700 393 251 12 62 423 69 451 4.01e-20 93.2
MS.gene61066.t1 AT4G23500 25.558 403 255 13 66 434 69 460 6.12e-20 92.8
MS.gene61066.t1 AT3G06770 25.737 373 230 12 65 403 43 402 6.97e-19 89.4
MS.gene61066.t1 AT3G06770 25.737 373 230 12 65 403 44 403 7.47e-19 89.0
MS.gene61066.t1 AT3G61490 24.324 370 241 12 66 405 61 421 2.81e-16 81.6
MS.gene61066.t1 AT3G61490 24.324 370 241 12 66 405 46 406 2.88e-16 81.3
MS.gene61066.t1 AT3G61490 24.324 370 241 12 66 405 46 406 2.88e-16 81.3
MS.gene61066.t1 AT3G61490 24.324 370 241 12 66 405 46 406 2.88e-16 81.3
MS.gene61066.t1 AT3G16850 22.762 391 256 12 65 422 40 417 3.12e-16 81.3
MS.gene61066.t1 AT3G61490 24.324 370 241 12 66 405 159 519 5.69e-16 80.9
MS.gene61066.t1 AT3G06770 24.601 313 195 9 122 403 31 333 3.55e-15 77.4
MS.gene61066.t1 AT3G06770 24.601 313 195 9 122 403 31 333 3.55e-15 77.4
MS.gene61066.t1 AT3G06770 24.585 301 186 9 134 403 25 315 2.03e-13 72.0

Find 94 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCATCTGTTGGCTATTC+TGG 0.169467 8.1:-38503016 None:intergenic
GGAACCAATAGAACAGATTT+TGG 0.208488 8.1:-38502396 None:intergenic
AGCCAAACGCGTGGAAGTTT+TGG 0.227777 8.1:-38502622 None:intergenic
TGCCATTCAGCTCAAGGATT+TGG 0.250772 8.1:+38505429 MS.gene61066:CDS
TTGTAGTCCCACTTACATTT+TGG 0.252854 8.1:-38505299 None:intergenic
TGTAGTCACGAAAGTGATTT+TGG 0.253475 8.1:+38504405 MS.gene61066:CDS
GTCACTGCAGTCAAATTTAA+TGG 0.268057 8.1:-38505334 None:intergenic
AAATATGGACAGATTCTTCT+TGG 0.276621 8.1:+38501978 None:intergenic
ATAGTGGCGAATGGAGTTTC+AGG 0.295850 8.1:+38502021 MS.gene61066:CDS
GTTAATGCAACGAAATTCAT+AGG 0.304534 8.1:+38502438 MS.gene61066:CDS
AGTTCATCTATAAAGGTTAA+AGG 0.314242 8.1:+38502984 MS.gene61066:CDS
ATTGTCCAAGACTGCAAAAT+TGG 0.318689 8.1:+38503146 MS.gene61066:CDS
ACAAGGTAACGGCGTCCTTT+AGG 0.328112 8.1:-38502417 None:intergenic
TACACCAAAATCTGTTCTAT+TGG 0.328917 8.1:+38502392 MS.gene61066:CDS
AGTCCTTAGCAATGTTGATT+TGG 0.335788 8.1:+38505377 MS.gene61066:CDS
TTTCTTCCAGTCATCAGCTT+TGG 0.352016 8.1:+38505257 MS.gene61066:intron
ATATGAATTCCGTCAGTGTT+TGG 0.362947 8.1:-38503104 None:intergenic
TCAGCTCAAGGATTTGGATA+TGG 0.367389 8.1:+38505435 MS.gene61066:CDS
CGATACAAGTTCATCTATAA+AGG 0.367696 8.1:+38502977 MS.gene61066:CDS
GTGGACCAGGACATGGAATC+AGG 0.368153 8.1:+38503585 MS.gene61066:CDS
TCCCAGTTCTTAGGATCTTC+CGG 0.369647 8.1:-38502598 None:intergenic
GGAGGTGCTGGATATGTTAA+AGG 0.370065 8.1:+38504967 MS.gene61066:CDS
AACTTTCTGACATACCTTCA+TGG 0.370106 8.1:+38502124 MS.gene61066:CDS
ATCCAAAACTTCCACGCGTT+TGG 0.373107 8.1:+38502620 MS.gene61066:CDS
TTTGCATTTCTCCAGATTGA+TGG 0.378623 8.1:+38502562 MS.gene61066:intron
TTCTTCTTGGTTTCTTTACT+CGG 0.379428 8.1:+38501991 MS.gene61066:CDS
AGCTTTGGTGCTGCAGGAAA+TGG 0.388430 8.1:+38502186 MS.gene61066:CDS
TTTACTCGGTTTGCTTATAG+TGG 0.390214 8.1:+38502005 MS.gene61066:CDS
TAAAATTGATCTATAAGAAT+GGG 0.393440 8.1:-38505030 None:intergenic
GCAGTCAAATTTAATGGCCT+TGG 0.403608 8.1:-38505328 None:intergenic
CTCCGGAAGATCCTAAGAAC+TGG 0.407663 8.1:+38502596 MS.gene61066:CDS
CAAGGCTCTGGAGTTATTGA+CGG 0.420399 8.1:+38502676 MS.gene61066:CDS
TTGGATACAGCACTTCTAAA+GGG 0.432719 8.1:+38504424 MS.gene61066:CDS
TTGACGGCTCAGGAAGTAAA+TGG 0.432957 8.1:+38502692 MS.gene61066:CDS
CTTGGTAAAGATAACTCAAC+TGG 0.447181 8.1:+38504382 MS.gene61066:CDS
TTTGGATACAGCACTTCTAA+AGG 0.453983 8.1:+38504423 MS.gene61066:CDS
CTTGTGAATATAGATAGCTT+TGG 0.454173 8.1:+38502171 MS.gene61066:CDS
GTAAAATTGATCTATAAGAA+TGG 0.463416 8.1:-38505031 None:intergenic
CAAGACTGCAAAATTGGAAC+AGG 0.468126 8.1:+38503152 MS.gene61066:CDS
TCAGTGTTTGGACTGTCTCC+TGG 0.469867 8.1:-38503092 None:intergenic
ATAGATAGCTTTGGTGCTGC+AGG 0.470470 8.1:+38502180 MS.gene61066:CDS
TGATGGAACACTGGTTGCTC+CGG 0.475544 8.1:+38502579 MS.gene61066:CDS
TAACTATAGTTCTGTGTGAC+GGG 0.476817 8.1:-38505553 None:intergenic
TCTGTTCTATTGGTTCCTAA+AGG 0.479333 8.1:+38502402 MS.gene61066:CDS
ACCGTTGGTGCACCTTTGCA+AGG 0.479936 8.1:-38502856 None:intergenic
GAGGTGCTGGATATGTTAAA+GGG 0.497893 8.1:+38504968 MS.gene61066:CDS
TATAGATGAACTTGTATCGA+TGG 0.501752 8.1:-38502973 None:intergenic
ATCCAAATCCTTGAGCTGAA+TGG 0.502123 8.1:-38505431 None:intergenic
ATGATTAGATTGTCTTTACA+AGG 0.505103 8.1:-38502462 None:intergenic
AGTCTTAATTCTAAGACCAT+TGG 0.510878 8.1:-38504452 None:intergenic
ATGATGTGCGACAACAACTT+TGG 0.511955 8.1:+38502048 MS.gene61066:CDS
CCGCGTTCGCTTGTCCATGA+AGG 0.523462 8.1:-38502138 None:intergenic
ACATATTGCCATTCAGCTCA+AGG 0.523769 8.1:+38505423 MS.gene61066:CDS
CATGTCATGTAGGGAGGTGC+TGG 0.523870 8.1:+38504955 MS.gene61066:intron
TAAAGACAATCTAATCATCC+AGG 0.530090 8.1:+38502467 MS.gene61066:CDS
TTAATGCAACGAAATTCATA+GGG 0.535160 8.1:+38502439 MS.gene61066:CDS
GGAGTTAAAGTGGCATCACC+AGG 0.538430 8.1:+38503074 MS.gene61066:CDS
TCTTAGAATTAAGACTTGGC+AGG 0.540406 8.1:+38504459 MS.gene61066:CDS
TCTCCAAATCAACATTGCTA+AGG 0.541315 8.1:-38505380 None:intergenic
GTTGATTTGGAGAAACAAGA+TGG 0.543075 8.1:+38505390 MS.gene61066:CDS
TGATACCTGATTCCATGTCC+TGG 0.547348 8.1:-38503590 None:intergenic
GAATTAAGGCATTCAGCTGA+AGG 0.547826 8.1:-38505468 None:intergenic
ATAATGTACCAAAATGTAAG+TGG 0.551720 8.1:+38505291 MS.gene61066:CDS
ATATTGTAAAATGCATCTGT+TGG 0.555096 8.1:-38503025 None:intergenic
TGAATTTCGTTGCATTAACA+AGG 0.555793 8.1:-38502434 None:intergenic
CGTCAATAACTCCAGAGCCT+TGG 0.555802 8.1:-38502675 None:intergenic
TCTCCAGATTGATGGAACAC+TGG 0.557615 8.1:+38502570 MS.gene61066:intron
TTAACTATAGTTCTGTGTGA+CGG 0.558669 8.1:-38505554 None:intergenic
TGACACAGAGGAAGATTATG+AGG 0.559293 8.1:+38502095 MS.gene61066:CDS
CTTCTAAAGGGGACTACCAA+TGG 0.563594 8.1:+38504436 MS.gene61066:CDS
TCTGGAGTTATTGACGGCTC+AGG 0.564729 8.1:+38502682 MS.gene61066:CDS
TGGATACAGCACTTCTAAAG+GGG 0.580220 8.1:+38504425 MS.gene61066:CDS
TCGTTGCATTAACAAGGTAA+CGG 0.584606 8.1:-38502428 None:intergenic
CATAATCTTCCTCTGTGTCA+AGG 0.592302 8.1:-38502092 None:intergenic
GGTTTGCTTATAGTGGCGAA+TGG 0.593921 8.1:+38502012 MS.gene61066:CDS
GCCTTGCAAAGGTGCACCAA+CGG 0.604733 8.1:+38502855 MS.gene61066:intron
TCCGGAAGATCCTAAGAACT+GGG 0.607519 8.1:+38502597 MS.gene61066:CDS
CTAAGGACTAAGTTGCTGCA+TGG 0.619838 8.1:-38505363 None:intergenic
AAAATTGATCTATAAGAATG+GGG 0.621737 8.1:-38505029 None:intergenic
CGGCTCAGGAAGTAAATGGT+GGG 0.625021 8.1:+38502696 MS.gene61066:CDS
ATGGTCTTAGAATTAAGACT+TGG 0.628616 8.1:+38504455 MS.gene61066:CDS
GGGTACGCTTTCAGAATGTG+AGG 0.631944 8.1:+38504989 MS.gene61066:CDS
ACGGCTCAGGAAGTAAATGG+TGG 0.633961 8.1:+38502695 MS.gene61066:CDS
CCTTCATGGACAAGCGAACG+CGG 0.635643 8.1:+38502138 MS.gene61066:CDS
TAATGTACCAAAATGTAAGT+GGG 0.636159 8.1:+38505292 MS.gene61066:CDS
TCCAACCTCATGTCAAAACC+AGG 0.643988 8.1:+38505062 MS.gene61066:CDS
TGGAGAAACTGATGATACTG+AGG 0.647771 8.1:+38502206 MS.gene61066:CDS
TGGGACTACAAATAGTGCCA+AGG 0.654414 8.1:+38505311 MS.gene61066:CDS
ACGCTTTCAGAATGTGAGGG+TGG 0.678654 8.1:+38504993 MS.gene61066:CDS
ACTCAACAACCTTGACACAG+AGG 0.681814 8.1:+38502083 MS.gene61066:CDS
GGTACGCTTTCAGAATGTGA+GGG 0.685332 8.1:+38504990 MS.gene61066:CDS
GGAGACAGTCCAAACACTGA+CGG 0.687886 8.1:+38503095 MS.gene61066:CDS
AGGTGCTGGATATGTTAAAG+GGG 0.703846 8.1:+38504969 MS.gene61066:CDS
TCATGGACAAGCGAACGCGG+CGG 0.737434 8.1:+38502141 MS.gene61066:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTTGATTAATTAATTA+TGG + chr8.1:38505168-38505187 MS.gene61066:intron 10.0%
!!! TCATTTAAAATCATATAAAA+TGG + chr8.1:38503462-38503481 MS.gene61066:intron 10.0%
!! AAAATAAATTTATATTGCAC+TGG + chr8.1:38504285-38504304 MS.gene61066:intron 15.0%
!! TAAAAATAAACTTATATTGC+AGG + chr8.1:38502791-38502810 MS.gene61066:intron 15.0%
!! TAAAATATAGAATACAACAA+TGG - chr8.1:38502900-38502919 None:intergenic 15.0%
!! TAAAATTGATCTATAAGAAT+GGG - chr8.1:38505033-38505052 None:intergenic 15.0%
!! TAATCAAATTAAACATATTC+AGG + chr8.1:38504113-38504132 MS.gene61066:intron 15.0%
!! TACAAGTTAAATATTAATGT+AGG - chr8.1:38505226-38505245 None:intergenic 15.0%
!!! ATTGATCAATTCTTATTTAT+AGG + chr8.1:38502338-38502357 MS.gene61066:intron 15.0%
!!! TGTAAAATTTTCAGAATATT+TGG + chr8.1:38502747-38502766 MS.gene61066:intron 15.0%
!! AAAATTGATCTATAAGAATG+GGG - chr8.1:38505032-38505051 None:intergenic 20.0%
!! AATAACTACTTTACCTAATA+TGG - chr8.1:38504321-38504340 None:intergenic 20.0%
!! GAATAAAGTTTATGTTAGTT+AGG - chr8.1:38504710-38504729 None:intergenic 20.0%
!! GTAAAATTGATCTATAAGAA+TGG - chr8.1:38505034-38505053 None:intergenic 20.0%
!! TCTAGAAAGATAAAAAAAGT+GGG - chr8.1:38504180-38504199 None:intergenic 20.0%
!! TGTTGAACATAGAAAAAAAT+AGG - chr8.1:38502261-38502280 None:intergenic 20.0%
!! TTAAAATAATGTTATGTGTG+TGG - chr8.1:38504220-38504239 None:intergenic 20.0%
!! TTTAGTTATTTGAATTTCAG+AGG - chr8.1:38503906-38503925 None:intergenic 20.0%
!! TTTCAAACATGCATTTATTA+AGG - chr8.1:38503221-38503240 None:intergenic 20.0%
!!! AAAATGAAGAGAATTTTTTG+TGG + chr8.1:38503566-38503585 MS.gene61066:CDS 20.0%
!!! ATTGATTTTGTACTAAATTG+AGG - chr8.1:38503629-38503648 None:intergenic 20.0%
!!! CACACATAACATTATTTTAA+TGG + chr8.1:38504220-38504239 MS.gene61066:intron 20.0%
!!! TATAACTTTTACCAAAATCA+CGG + chr8.1:38503277-38503296 MS.gene61066:intron 20.0%
!!! TTAAATTTTAGTTGCATGTT+TGG - chr8.1:38503338-38503357 None:intergenic 20.0%
!!! TTCTAGAAAGATAAAAAAAG+TGG - chr8.1:38504181-38504200 None:intergenic 20.0%
!!! TTGATTTTGTACTAAATTGA+GGG - chr8.1:38503628-38503647 None:intergenic 20.0%
! AGTTCATCTATAAAGGTTAA+AGG + chr8.1:38502984-38503003 MS.gene61066:CDS 25.0%
! ATAATGTACCAAAATGTAAG+TGG + chr8.1:38505291-38505310 MS.gene61066:CDS 25.0%
! ATATTGTAAAATGCATCTGT+TGG - chr8.1:38503028-38503047 None:intergenic 25.0%
! ATGATTAGATTGTCTTTACA+AGG - chr8.1:38502465-38502484 None:intergenic 25.0%
! TAACTGTGCTATATTATTCA+GGG + chr8.1:38503504-38503523 MS.gene61066:intron 25.0%
! TAATGTACCAAAATGTAAGT+GGG + chr8.1:38505292-38505311 MS.gene61066:CDS 25.0%
! TACAATTACAATTACTGACA+TGG + chr8.1:38502537-38502556 MS.gene61066:intron 25.0%
! TAGTTTAACTATGAGTTTAG+TGG + chr8.1:38504752-38504771 MS.gene61066:intron 25.0%
! TCAATTTACATTATCACAAG+TGG - chr8.1:38503778-38503797 None:intergenic 25.0%
! TTAATGCAACGAAATTCATA+GGG + chr8.1:38502439-38502458 MS.gene61066:CDS 25.0%
! TTTATGTTAGTTAGGTTCAT+GGG - chr8.1:38504702-38504721 None:intergenic 25.0%
!! GTTTAAAATTAGAGTGCTTA+TGG + chr8.1:38503668-38503687 MS.gene61066:intron 25.0%
!! TAGGATAAAATTTGCTTGAT+TGG - chr8.1:38505207-38505226 None:intergenic 25.0%
!! TGATTTTGTACTAAATTGAG+GGG - chr8.1:38503627-38503646 None:intergenic 25.0%
!! TTTTGGTAAAAGTTATACGT+TGG - chr8.1:38503274-38503293 None:intergenic 25.0%
!!! AAATGTAGTTTTAACTCTGA+AGG + chr8.1:38502929-38502948 MS.gene61066:intron 25.0%
!!! AAGTTTTATCACTGGAATTA+AGG - chr8.1:38505485-38505504 None:intergenic 25.0%
!!! AATGTAGTTTTAACTCTGAA+GGG + chr8.1:38502930-38502949 MS.gene61066:intron 25.0%
!!! CTACTTTTTTTTTACAGCAT+TGG + chr8.1:38504355-38504374 MS.gene61066:intron 25.0%
AACTGTGCTATATTATTCAG+GGG + chr8.1:38503505-38503524 MS.gene61066:intron 30.0%
AATAACGTGAGTTACATTAC+CGG + chr8.1:38504593-38504612 MS.gene61066:intron 30.0%
AGACACAAAAATTTCATGAG+TGG - chr8.1:38503721-38503740 None:intergenic 30.0%
ATCACAAGTGGCATATATAA+AGG - chr8.1:38503766-38503785 None:intergenic 30.0%
ATGTTTATGATTGAGTAGTG+TGG + chr8.1:38503194-38503213 MS.gene61066:intron 30.0%
ATTTATATTGCACTGGAAAG+TGG + chr8.1:38504292-38504311 MS.gene61066:intron 30.0%
CACTTACATTTCAGAACTAT+GGG + chr8.1:38504846-38504865 MS.gene61066:intron 30.0%
CGATACAAGTTCATCTATAA+AGG + chr8.1:38502977-38502996 MS.gene61066:CDS 30.0%
CTAACTGTGCTATATTATTC+AGG + chr8.1:38503503-38503522 MS.gene61066:intron 30.0%
CTTGTGAATATAGATAGCTT+TGG + chr8.1:38502171-38502190 MS.gene61066:CDS 30.0%
GTTAATGCAACGAAATTCAT+AGG + chr8.1:38502438-38502457 MS.gene61066:CDS 30.0%
GTTTATGTTAGTTAGGTTCA+TGG - chr8.1:38504703-38504722 None:intergenic 30.0%
TAAAGACAATCTAATCATCC+AGG + chr8.1:38502467-38502486 MS.gene61066:CDS 30.0%
TACACCAAAATCTGTTCTAT+TGG + chr8.1:38502392-38502411 MS.gene61066:CDS 30.0%
TATAGATGAACTTGTATCGA+TGG - chr8.1:38502976-38502995 None:intergenic 30.0%
TCACTTACATTTCAGAACTA+TGG + chr8.1:38504845-38504864 MS.gene61066:intron 30.0%
TGAATTTCGTTGCATTAACA+AGG - chr8.1:38502437-38502456 None:intergenic 30.0%
TTATGTTAGTTAGGTTCATG+GGG - chr8.1:38504701-38504720 None:intergenic 30.0%
TTCTTCTTGGTTTCTTTACT+CGG + chr8.1:38501991-38502010 MS.gene61066:CDS 30.0%
! ATGGTCTTAGAATTAAGACT+TGG + chr8.1:38504455-38504474 MS.gene61066:CDS 30.0%
! TTTCTAGAAGAGTTAGTTAC+AGG + chr8.1:38504192-38504211 MS.gene61066:intron 30.0%
!! AGTCTTAATTCTAAGACCAT+TGG - chr8.1:38504455-38504474 None:intergenic 30.0%
!! ATCTTGAGAAGTTTTATCAC+TGG - chr8.1:38505493-38505512 None:intergenic 30.0%
!! TCGAATTTTAGGAGTTAAAG+TGG + chr8.1:38503064-38503083 MS.gene61066:CDS 30.0%
!! TGTTTTGTTCATGTCATGTA+GGG + chr8.1:38504946-38504965 MS.gene61066:intron 30.0%
!! TTGTTTTGTTCATGTCATGT+AGG + chr8.1:38504945-38504964 MS.gene61066:intron 30.0%
AACTTTCTGACATACCTTCA+TGG + chr8.1:38502124-38502143 MS.gene61066:CDS 35.0%
AAGAAAGTTGTTCTTACCGT+TGG - chr8.1:38502874-38502893 None:intergenic 35.0%
ACATGCACTTTACACATTCA+AGG + chr8.1:38502278-38502297 MS.gene61066:intron 35.0%
ATATGAATTCCGTCAGTGTT+TGG - chr8.1:38503107-38503126 None:intergenic 35.0%
ATCAACTTCATGTGAGTTTG+GGG - chr8.1:38504142-38504161 None:intergenic 35.0%
ATTGTCCAAGACTGCAAAAT+TGG + chr8.1:38503146-38503165 MS.gene61066:CDS 35.0%
CATCAACTTCATGTGAGTTT+GGG - chr8.1:38504143-38504162 None:intergenic 35.0%
CTTGGTAAAGATAACTCAAC+TGG + chr8.1:38504382-38504401 MS.gene61066:CDS 35.0%
GTCACTGCAGTCAAATTTAA+TGG - chr8.1:38505337-38505356 None:intergenic 35.0%
TATAGCACAGTTAGTCAATG+TGG - chr8.1:38503497-38503516 None:intergenic 35.0%
TATAGGCTCTTCAAAAAGCA+TGG + chr8.1:38502355-38502374 MS.gene61066:intron 35.0%
TCGTTGCATTAACAAGGTAA+CGG - chr8.1:38502431-38502450 None:intergenic 35.0%
TCTCCAAATCAACATTGCTA+AGG - chr8.1:38505383-38505402 None:intergenic 35.0%
TCTTAGAATTAAGACTTGGC+AGG + chr8.1:38504459-38504478 MS.gene61066:CDS 35.0%
TGGAAAGTGGAAACCATATT+AGG + chr8.1:38504305-38504324 MS.gene61066:intron 35.0%
TTGGAGTTTCGACAAAATTG+CGG - chr8.1:38503255-38503274 None:intergenic 35.0%
TTGGATACAGCACTTCTAAA+GGG + chr8.1:38504424-38504443 MS.gene61066:CDS 35.0%
TTTGCATTTCTCCAGATTGA+TGG + chr8.1:38502562-38502581 MS.gene61066:intron 35.0%
TTTGGATACAGCACTTCTAA+AGG + chr8.1:38504423-38504442 MS.gene61066:CDS 35.0%
! AACTTTTACCAAAATCACGG+TGG + chr8.1:38503280-38503299 MS.gene61066:intron 35.0%
! AGTCCTTAGCAATGTTGATT+TGG + chr8.1:38505377-38505396 MS.gene61066:CDS 35.0%
! ATAGGCTCTTCAAAAAGCAT+GGG + chr8.1:38502356-38502375 MS.gene61066:intron 35.0%
! GGAACCAATAGAACAGATTT+TGG - chr8.1:38502399-38502418 None:intergenic 35.0%
! TACGTGACTTGTGTAAACAT+AGG + chr8.1:38504244-38504263 MS.gene61066:intron 35.0%
! TGTAGTCACGAAAGTGATTT+TGG + chr8.1:38504405-38504424 MS.gene61066:CDS 35.0%
! TTGTAGTCCCACTTACATTT+TGG - chr8.1:38505302-38505321 None:intergenic 35.0%
! TTTACTCGGTTTGCTTATAG+TGG + chr8.1:38502005-38502024 MS.gene61066:CDS 35.0%
!! GTTGATTTGGAGAAACAAGA+TGG + chr8.1:38505390-38505409 MS.gene61066:CDS 35.0%
!! TAGGGTTTTGACAGACTTTA+AGG - chr8.1:38504673-38504692 None:intergenic 35.0%
!! TCTGTTCTATTGGTTCCTAA+AGG + chr8.1:38502402-38502421 MS.gene61066:CDS 35.0%
!! TTGAAGAAAGCTGTTTTCCA+AGG + chr8.1:38502658-38502677 MS.gene61066:CDS 35.0%
!! TTTTACAGCATTGGAAGTCT+TGG + chr8.1:38504364-38504383 MS.gene61066:intron 35.0%
!!! AAGAGAATTTTTTGTGGACC+AGG + chr8.1:38503572-38503591 MS.gene61066:CDS 35.0%
!!! ATGTGTTGATTTTGAGTACC+TGG - chr8.1:38505083-38505102 None:intergenic 35.0%
!!! TTTTTTGTGTATGCATCACC+TGG - chr8.1:38502488-38502507 None:intergenic 35.0%
ACATATTGCCATTCAGCTCA+AGG + chr8.1:38505423-38505442 MS.gene61066:CDS 40.0%
ATCCAAATCCTTGAGCTGAA+TGG - chr8.1:38505434-38505453 None:intergenic 40.0%
ATGATGTGCGACAACAACTT+TGG + chr8.1:38502048-38502067 MS.gene61066:CDS 40.0%
ATGTAACTCACGTTATTGCG+AGG - chr8.1:38504590-38504609 None:intergenic 40.0%
CAAGACTGCAAAATTGGAAC+AGG + chr8.1:38503152-38503171 MS.gene61066:CDS 40.0%
CATAATCTTCCTCTGTGTCA+AGG - chr8.1:38502095-38502114 None:intergenic 40.0%
CATCAAAGAAATCCTCACAC+CGG - chr8.1:38504615-38504634 None:intergenic 40.0%
CTAAATTGAGGGGTGAAGAT+TGG - chr8.1:38503617-38503636 None:intergenic 40.0%
GCAGTCAAATTTAATGGCCT+TGG - chr8.1:38505331-38505350 None:intergenic 40.0%
GCATCAACTTCATGTGAGTT+TGG - chr8.1:38504144-38504163 None:intergenic 40.0%
TCAGCTCAAGGATTTGGATA+TGG + chr8.1:38505435-38505454 MS.gene61066:CDS 40.0%
TGACACAGAGGAAGATTATG+AGG + chr8.1:38502095-38502114 MS.gene61066:CDS 40.0%
TGGAGAAACTGATGATACTG+AGG + chr8.1:38502206-38502225 MS.gene61066:CDS 40.0%
TTATCTCCAAAGCTGATGAC+TGG - chr8.1:38505266-38505285 None:intergenic 40.0%
TTTCTTCCAGTCATCAGCTT+TGG + chr8.1:38505257-38505276 MS.gene61066:intron 40.0%
TTTGTTCATGTCATGTAGGG+AGG + chr8.1:38504949-38504968 MS.gene61066:intron 40.0%
! AATGCATCTGTTGGCTATTC+TGG - chr8.1:38503019-38503038 None:intergenic 40.0%
! CTGTTCCAATTTTGCAGTCT+TGG - chr8.1:38503154-38503173 None:intergenic 40.0%
! GAATTAAGGCATTCAGCTGA+AGG - chr8.1:38505471-38505490 None:intergenic 40.0%
! TAGGCTCTTCAAAAAGCATG+GGG + chr8.1:38502357-38502376 MS.gene61066:intron 40.0%
! TGCGATGCTGTTCGAATTTT+AGG + chr8.1:38503053-38503072 MS.gene61066:CDS 40.0%
! TGGATACAGCACTTCTAAAG+GGG + chr8.1:38504425-38504444 MS.gene61066:CDS 40.0%
! TTTTTCTCACAGCCTTGCAA+AGG + chr8.1:38502844-38502863 MS.gene61066:intron 40.0%
!! AGGTGCTGGATATGTTAAAG+GGG + chr8.1:38504969-38504988 MS.gene61066:CDS 40.0%
!! GAGGTGCTGGATATGTTAAA+GGG + chr8.1:38504968-38504987 MS.gene61066:CDS 40.0%
!!! AGTTTTGGATCCCAGTTCTT+AGG - chr8.1:38502610-38502629 None:intergenic 40.0%
!!! ATTTTTTGTGGACCAGGACA+TGG + chr8.1:38503578-38503597 MS.gene61066:CDS 40.0%
ACTCAACAACCTTGACACAG+AGG + chr8.1:38502083-38502102 MS.gene61066:CDS 45.0%
ATAGTGGCGAATGGAGTTTC+AGG + chr8.1:38502021-38502040 MS.gene61066:CDS 45.0%
ATCCAAAACTTCCACGCGTT+TGG + chr8.1:38502620-38502639 MS.gene61066:CDS 45.0%
CAACCAGTGTTCCATCAATC+TGG - chr8.1:38502576-38502595 None:intergenic 45.0%
CGGTGTGAGGATTTCTTTGA+TGG + chr8.1:38504613-38504632 MS.gene61066:intron 45.0%
CTAAGGACTAAGTTGCTGCA+TGG - chr8.1:38505366-38505385 None:intergenic 45.0%
GGTACGCTTTCAGAATGTGA+GGG + chr8.1:38504990-38505009 MS.gene61066:CDS 45.0%
TAGGTTCATGGGGTTCACTA+GGG - chr8.1:38504691-38504710 None:intergenic 45.0%
TCCAACCTCATGTCAAAACC+AGG + chr8.1:38505062-38505081 MS.gene61066:CDS 45.0%
TCCCAGTTCTTAGGATCTTC+CGG - chr8.1:38502601-38502620 None:intergenic 45.0%
TCCGGAAGATCCTAAGAACT+GGG + chr8.1:38502597-38502616 MS.gene61066:CDS 45.0%
TCTCCAGATTGATGGAACAC+TGG + chr8.1:38502570-38502589 MS.gene61066:intron 45.0%
TCTGAAGGGTGATTCATTGC+AGG + chr8.1:38502944-38502963 MS.gene61066:intron 45.0%
TGAGTTACATTACCGGTGTG+AGG + chr8.1:38504600-38504619 MS.gene61066:intron 45.0%
TGATACCTGATTCCATGTCC+TGG - chr8.1:38503593-38503612 None:intergenic 45.0%
TGCCATTCAGCTCAAGGATT+TGG + chr8.1:38505429-38505448 MS.gene61066:CDS 45.0%
TGGGACTACAAATAGTGCCA+AGG + chr8.1:38505311-38505330 MS.gene61066:CDS 45.0%
TTAGGTTCATGGGGTTCACT+AGG - chr8.1:38504692-38504711 None:intergenic 45.0%
TTGACGGCTCAGGAAGTAAA+TGG + chr8.1:38502692-38502711 MS.gene61066:CDS 45.0%
! CTTCTAAAGGGGACTACCAA+TGG + chr8.1:38504436-38504455 MS.gene61066:CDS 45.0%
! GGTTTGCTTATAGTGGCGAA+TGG + chr8.1:38502012-38502031 MS.gene61066:CDS 45.0%
!! AAAGCTGTTTTCCAAGGCTC+TGG + chr8.1:38502664-38502683 MS.gene61066:CDS 45.0%
!! ATAGATAGCTTTGGTGCTGC+AGG + chr8.1:38502180-38502199 MS.gene61066:CDS 45.0%
!! CAAGGCTCTGGAGTTATTGA+CGG + chr8.1:38502676-38502695 MS.gene61066:CDS 45.0%
!! CTCACATGAAGTTGATGCCA+CGG + chr8.1:38504146-38504165 MS.gene61066:intron 45.0%
!! GGAGGTGCTGGATATGTTAA+AGG + chr8.1:38504967-38504986 MS.gene61066:CDS 45.0%
!!! ACCTGGTTTTGACATGAGGT+TGG - chr8.1:38505066-38505085 None:intergenic 45.0%
!!! GAGTACCTGGTTTTGACATG+AGG - chr8.1:38505070-38505089 None:intergenic 45.0%
AAAAGTGGGAACCACAACCG+TGG - chr8.1:38504166-38504185 None:intergenic 50.0%
ACGCTTTCAGAATGTGAGGG+TGG + chr8.1:38504993-38505012 MS.gene61066:CDS 50.0%
ACGGCTCAGGAAGTAAATGG+TGG + chr8.1:38502695-38502714 MS.gene61066:CDS 50.0%
CGGCTCAGGAAGTAAATGGT+GGG + chr8.1:38502696-38502715 MS.gene61066:CDS 50.0%
CGTCAATAACTCCAGAGCCT+TGG - chr8.1:38502678-38502697 None:intergenic 50.0%
CTCCGGAAGATCCTAAGAAC+TGG + chr8.1:38502596-38502615 MS.gene61066:CDS 50.0%
GAAAAATCGAGCCAAACGCG+TGG - chr8.1:38502634-38502653 None:intergenic 50.0%
GGAGACAGTCCAAACACTGA+CGG + chr8.1:38503095-38503114 MS.gene61066:CDS 50.0%
GGAGTTAAAGTGGCATCACC+AGG + chr8.1:38503074-38503093 MS.gene61066:CDS 50.0%
GGGTACGCTTTCAGAATGTG+AGG + chr8.1:38504989-38505008 MS.gene61066:CDS 50.0%
TCAGTGTTTGGACTGTCTCC+TGG - chr8.1:38503095-38503114 None:intergenic 50.0%
! ACAAGGTAACGGCGTCCTTT+AGG - chr8.1:38502420-38502439 None:intergenic 50.0%
! ACAGTGTGCCACCGTGATTT+TGG - chr8.1:38503291-38503310 None:intergenic 50.0%
! AGCCAAACGCGTGGAAGTTT+TGG - chr8.1:38502625-38502644 None:intergenic 50.0%
! TCTGGAGTTATTGACGGCTC+AGG + chr8.1:38502682-38502701 MS.gene61066:CDS 50.0%
! TGATGGAACACTGGTTGCTC+CGG + chr8.1:38502579-38502598 MS.gene61066:CDS 50.0%
!! AGCTTTGGTGCTGCAGGAAA+TGG + chr8.1:38502186-38502205 MS.gene61066:CDS 50.0%
!! TGAAGTTGATGCCACGGTTG+TGG + chr8.1:38504152-38504171 MS.gene61066:intron 50.0%
ACCGTTGGTGCACCTTTGCA+AGG - chr8.1:38502859-38502878 None:intergenic 55.0%
CCTTCATGGACAAGCGAACG+CGG + chr8.1:38502138-38502157 MS.gene61066:CDS 55.0%
GTGGACCAGGACATGGAATC+AGG + chr8.1:38503585-38503604 MS.gene61066:CDS 55.0%
! CATGTCATGTAGGGAGGTGC+TGG + chr8.1:38504955-38504974 MS.gene61066:intron 55.0%
! GCCTTGCAAAGGTGCACCAA+CGG + chr8.1:38502855-38502874 MS.gene61066:intron 55.0%
CCGCGTTCGCTTGTCCATGA+AGG - chr8.1:38502141-38502160 None:intergenic 60.0%
TCATGGACAAGCGAACGCGG+CGG + chr8.1:38502141-38502160 MS.gene61066:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 38501982 38505572 38501982 ID=MS.gene61066
chr8.1 mRNA 38501982 38505572 38501982 ID=MS.gene61066.t1;Parent=MS.gene61066
chr8.1 exon 38501982 38502227 38501982 ID=MS.gene61066.t1.exon1;Parent=MS.gene61066.t1
chr8.1 CDS 38501982 38502227 38501982 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38502360 38502488 38502360 ID=MS.gene61066.t1.exon2;Parent=MS.gene61066.t1
chr8.1 CDS 38502360 38502488 38502360 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38502577 38502747 38502577 ID=MS.gene61066.t1.exon3;Parent=MS.gene61066.t1
chr8.1 CDS 38502577 38502747 38502577 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38502856 38502876 38502856 ID=MS.gene61066.t1.exon4;Parent=MS.gene61066.t1
chr8.1 CDS 38502856 38502876 38502856 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38502966 38503173 38502966 ID=MS.gene61066.t1.exon5;Parent=MS.gene61066.t1
chr8.1 CDS 38502966 38503173 38502966 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38503525 38503606 38503525 ID=MS.gene61066.t1.exon6;Parent=MS.gene61066.t1
chr8.1 CDS 38503525 38503606 38503525 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38504372 38504480 38504372 ID=MS.gene61066.t1.exon7;Parent=MS.gene61066.t1
chr8.1 CDS 38504372 38504480 38504372 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38504967 38505083 38504967 ID=MS.gene61066.t1.exon8;Parent=MS.gene61066.t1
chr8.1 CDS 38504967 38505083 38504967 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
chr8.1 exon 38505267 38505572 38505267 ID=MS.gene61066.t1.exon9;Parent=MS.gene61066.t1
chr8.1 CDS 38505267 38505572 38505267 ID=cds.MS.gene61066.t1;Parent=MS.gene61066.t1
Gene Sequence

>MS.gene61066

ATGGACAGATTCTTCTTGGTTTCTTTACTCGGTTTGCTTATAGTGGCGAATGGAGTTTCAGGAAGCATGATGTGCGACAACAACTTTGGCATGCTTGAAGAACTCAACAACCTTGACACAGAGGAAGATTATGAGGTAGAAGAACTTTCTGACATACCTTCATGGACAAGCGAACGCGGCGGAAAAGTTCTTGTGAATATAGATAGCTTTGGTGCTGCAGGAAATGGAGAAACTGATGATACTGAGGTAAAGTTCTTTCATTATTTGCAAATTCGTCCTATTTTTTTCTATGTTCAACATGCACTTTACACATTCAAGGTTGTTGAACATATGCAACTGTTATATTTTTTTTCTGTATTGATCAATTCTTATTTATAGGCTCTTCAAAAAGCATGGGGAGTTGCTTGTTCTACACCAAAATCTGTTCTATTGGTTCCTAAAGGACGCCGTTACCTTGTTAATGCAACGAAATTCATAGGGCCTTGTAAAGACAATCTAATCATCCAGGTGATGCATACACAAAAAAGTCATTTAGTTTTATCAGCGACTCATCATTACAATTACAATTACTGACATGGTATTTGCATTTCTCCAGATTGATGGAACACTGGTTGCTCCGGAAGATCCTAAGAACTGGGATCCAAAACTTCCACGCGTTTGGCTCGATTTTTCTAAATTGAAGAAAGCTGTTTTCCAAGGCTCTGGAGTTATTGACGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGACTAATGTAAAATTTTCAGAATATTTGGCTTTGTTATCTTACAAATATTTAAAAATAAACTTATATTGCAGGCAATAATAATTTTCTGTTTTTGTTTTTTTCTTTTTCTCACAGCCTTGCAAAGGTGCACCAACGGTAAGAACAACTTTCTTACACCATTGTTGTATTCTATATTTTAAGCACAAAAAAATGTAGTTTTAACTCTGAAGGGTGATTCATTGCAGGCACTAACCATCGATACAAGTTCATCTATAAAGGTTAAAGGACTAACTATCCAGAATAGCCAACAGATGCATTTTACAATATCGCGATGCGATGCTGTTCGAATTTTAGGAGTTAAAGTGGCATCACCAGGAGACAGTCCAAACACTGACGGAATTCATATTAGTGAATCAACAAATGTCATTGTCCAAGACTGCAAAATTGGAACAGGTTCTGAACTTAGAATCAACATGTTTATGATTGAGTAGTGTGGTCCTTAATAAATGCATGTTTGAAATCACATTTGCACCGCAATTTTGTCGAAACTCCAACGTATAACTTTTACCAAAATCACGGTGGCACACTGTGCTTATGTCAAATTTACTGTCAATCCAAACATGCAACTAAAATTTAATTATGTTGAAATTTTACATTCAAATTTTCTTTCAAAGTATAAACATATCTAAATATAAATCGCTTTATTTCGAACTCAATTATACTCAAAACAATTTATAATTTTCATTTAAAATCATATAAAATGGTCACACAAACCACATTGACTAACTGTGCTATATTATTCAGGGGATGATTGCATTTCAATTGTGAATGCTAGTTCTAATATCAAAATGAAGAGAATTTTTTGTGGACCAGGACATGGAATCAGGTATCATCCAATCTTCACCCCTCAATTTAGTACAAAATCAATGTTAATACTTGTTTGTTACGTTTAAAATTAGAGTGCTTATGGTTGCACAAAGATTTTCTGACACTAATGCCACTCATGAAATTTTTGTGTCTAAACGCTTTGTAAAACTATCTACCTTTATATATGCCACTTGTGATAATGTAAATTGACATCTGTAAAAAAATTAAAAAGATAAAAGTGATATTGAAATCATAAATTAATTTTTTACTGTTATTTGACATATATTTAAGTATTTACTAGTAAAATCATTTTTACCTCTGAAATTCAAATAACTAAAATGATGTAAAGTAGATTTTGTTCTAAGTTAAAATGATGAAAATAGTTTAGCTTTATTTTATCTTTTGTTATAGAAATAGTTCATCAATAAATACTTATATAATAAGTGATTTATTAAGCTGTATATACAATTAGACTAAAAGCATTCAAGCACAACTAACTTTACTTCAAAGTTTTTAACTTAAATTTAATCAAATTAAACATATTCAGGCAACCCCAAACTCACATGAAGTTGATGCCACGGTTGTGGTTCCCACTTTTTTTATCTTTCTAGAAGAGTTAGTTACAGGAACCACACACATAACATTATTTTAATGGTTACGTGACTTGTGTAAACATAGGATATCAAACTCAAAGATAAAAATAAATTTATATTGCACTGGAAAGTGGAAACCATATTAGGTAAAGTAGTTATTTTCTTTCTCTAACACTACTTTTTTTTTACAGCATTGGAAGTCTTGGTAAAGATAACTCAACTGGTGTAGTCACGAAAGTGATTTTGGATACAGCACTTCTAAAGGGGACTACCAATGGTCTTAGAATTAAGACTTGGCAGGTAGAATTTTTTATTTCTATCTTGATTAAATTTTGCTAAATATTTATTATGTAGTATTGTTAATTAATTAATTTAATTGACTCAATTGATAAAGAGCTTAATCATACCTCGCAATAACGTGAGTTACATTACCGGTGTGAGGATTTCTTTGATGGAGAATTTGTAAATACTTTGTTAGCGTTCTCTCAGCCTTAAAGTCTGTCAAAACCCTAGTGAACCCCATGAACCTAACTAACATAAACTTTATTCTATAAAAAACAATATCATTAATTAGTTTAACTATGAGTTTAGTGGATATACACATAGAGTGAAAGAGAAAATTATATCGCATTTAATTGAACATTTTATAATTTGAAATTATTTTTCACTTACATTTCAGAACTATGGGAACTGATGAATTTGAAAATGACAAATAATGCTTTACTGATGAATTTGAAAATGACAAATAATGCTTTCTCTCTATCTTGTTTTGTTCATGTCATGTAGGGAGGTGCTGGATATGTTAAAGGGGTACGCTTTCAGAATGTGAGGGTGGAAAATGTATCAAACCCCATTCTTATAGATCAATTTTACTGTGATTCTCCAACCTCATGTCAAAACCAGGTACTCAAAATCAACACATCATTTTAAAGATTTGAGTTCTTTAATGTTTCATTTTTTTTTAATGATGTTTAAATTATTATTGTATATACTTGATTAATTAATTATGGTTTTGATACTTTTCCAATCAAGCAAATTTTATCCTACATTAATATTTAACTTGTATGATTTTTTTTTTTCTTCCAGTCATCAGCTTTGGAGATAAGTGAGATAATGTACCAAAATGTAAGTGGGACTACAAATAGTGCCAAGGCCATTAAATTTGACTGCAGTGACACTGTTCCATGCAGCAACTTAGTCCTTAGCAATGTTGATTTGGAGAAACAAGATGGCACAGTTGAAACATATTGCCATTCAGCTCAAGGATTTGGATATGGTGTTGTTCATCCTTCAGCTGAATGCCTTAATTCCAGTGATAAAACTTCTCAAGATGATGAATCTCAATCTATTATTTCTGAAGATGATGATTATACCCGTCACACAGAACTATAG
Protein sequence

>MS.gene61066.t1

MDRFFLVSLLGLLIVANGVSGSMMCDNNFGMLEELNNLDTEEDYEVEELSDIPSWTSERGGKVLVNIDSFGAAGNGETDDTEALQKAWGVACSTPKSVLLVPKGRRYLVNATKFIGPCKDNLIIQIDGTLVAPEDPKNWDPKLPRVWLDFSKLKKAVFQGSGVIDGSGSKWWAASCKKNKTNPCKGAPTALTIDTSSSIKVKGLTIQNSQQMHFTISRCDAVRILGVKVASPGDSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGVVTKVILDTALLKGTTNGLRIKTWQGGAGYVKGVRFQNVRVENVSNPILIDQFYCDSPTSCQNQSSALEISEIMYQNVSGTTNSAKAIKFDCSDTVPCSNLVLSNVDLEKQDGTVETYCHSAQGFGYGVVHPSAECLNSSDKTSQDDESQSIISEDDDYTRHTEL