AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89048

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89048.t1 MTR_2g103410 93.750 432 27 0 21 452 20 451 0.0 823
MS.gene89048.t1 MTR_2g103410 91.946 298 24 0 21 318 20 317 0.0 551
MS.gene89048.t1 MTR_7g113910 64.000 450 81 7 4 450 2 373 0.0 538
MS.gene89048.t1 MTR_1g052315 48.925 372 186 3 56 426 60 428 1.57e-121 362
MS.gene89048.t1 MTR_8g065030 45.501 389 210 2 52 440 57 443 1.87e-117 352
MS.gene89048.t1 MTR_2g060350 42.563 437 226 8 11 426 7 439 2.75e-114 343
MS.gene89048.t1 MTR_7g091850 48.128 374 191 3 54 426 70 441 3.78e-114 343
MS.gene89048.t1 MTR_7g091840 49.062 320 160 3 54 371 59 377 4.95e-104 315
MS.gene89048.t1 MTR_3g030540 45.845 373 197 4 55 426 65 433 4.55e-101 309
MS.gene89048.t1 MTR_1g086390 43.307 381 203 7 59 428 80 458 3.97e-98 303
MS.gene89048.t1 MTR_6g005630 42.051 390 212 8 42 427 24 403 5.47e-98 300
MS.gene89048.t1 MTR_4g094715 40.519 385 216 7 53 427 58 439 1.38e-93 290
MS.gene89048.t1 MTR_7g110050 41.425 379 212 7 59 428 66 443 3.02e-93 290
MS.gene89048.t1 MTR_2g103650 40.984 366 210 5 60 420 28 392 9.56e-92 284
MS.gene89048.t1 MTR_5g033680 38.363 391 228 6 59 439 58 445 7.82e-89 278
MS.gene89048.t1 MTR_2g049400 41.935 372 207 7 60 430 28 391 2.27e-87 272
MS.gene89048.t1 MTR_5g043350 38.830 376 219 5 60 431 29 397 7.65e-86 268
MS.gene89048.t1 MTR_3g438050 37.306 386 230 6 50 430 17 395 8.99e-85 265
MS.gene89048.t1 MTR_2g032710 39.740 385 219 7 53 427 60 441 2.72e-84 266
MS.gene89048.t1 MTR_6g028080 37.895 380 223 6 57 431 27 398 6.54e-84 263
MS.gene89048.t1 MTR_6g005630 39.744 390 198 10 42 427 24 380 2.46e-83 262
MS.gene89048.t1 MTR_3g084380 39.108 381 218 6 45 420 6 377 1.70e-82 259
MS.gene89048.t1 MTR_4g120320 38.084 428 236 14 17 429 8 421 9.32e-82 259
MS.gene89048.t1 MTR_8g065010 36.816 402 220 8 56 427 103 500 1.19e-80 259
MS.gene89048.t1 MTR_4g083660 40.106 379 218 8 54 430 3 374 1.46e-80 254
MS.gene89048.t1 MTR_3g054320 38.743 382 218 5 60 437 30 399 1.50e-80 255
MS.gene89048.t1 MTR_5g034090 36.776 397 218 8 60 427 121 513 2.43e-80 258
MS.gene89048.t1 MTR_4g084050 36.631 374 216 7 57 419 20 383 1.11e-79 252
MS.gene89048.t1 MTR_8g009810 39.529 382 222 7 51 430 26 400 3.22e-79 251
MS.gene89048.t1 MTR_0157s0060 37.867 375 217 4 65 435 3 365 5.12e-78 247
MS.gene89048.t1 MTR_4g034020 37.867 375 217 4 65 435 3 365 5.12e-78 247
MS.gene89048.t1 MTR_8g010070 37.887 388 219 7 47 430 19 388 2.39e-76 244
MS.gene89048.t1 MTR_2g435640 37.995 379 223 7 57 429 50 422 3.22e-76 244
MS.gene89048.t1 MTR_8g010080 37.867 375 214 7 59 431 30 387 3.82e-76 243
MS.gene89048.t1 MTR_8g010110 35.904 376 223 5 59 432 30 389 6.36e-76 243
MS.gene89048.t1 MTR_3g084360 35.602 382 234 5 53 430 17 390 3.64e-74 238
MS.gene89048.t1 MTR_8g010090 35.200 375 225 6 59 431 30 388 6.47e-74 237
MS.gene89048.t1 MTR_1g012390 37.037 378 222 10 56 427 24 391 3.01e-73 236
MS.gene89048.t1 MTR_7g035415 43.003 293 152 6 59 347 39 320 1.81e-71 229
MS.gene89048.t1 MTR_8g008765 37.048 332 191 4 56 385 27 342 2.44e-71 229
MS.gene89048.t1 MTR_8g010040 39.142 373 206 8 57 426 29 383 2.27e-70 228
MS.gene89048.t1 MTR_8g030930 35.789 380 229 9 58 429 25 397 2.20e-69 226
MS.gene89048.t1 MTR_2g058840 36.034 358 220 6 59 413 24 375 5.92e-68 223
MS.gene89048.t1 MTR_2g058670 35.890 365 213 7 59 413 24 377 1.22e-67 222
MS.gene89048.t1 MTR_1g013730 34.853 373 219 8 57 426 24 375 5.36e-66 216
MS.gene89048.t1 MTR_8g077320 39.934 303 136 5 59 347 32 302 4.39e-65 213
MS.gene89048.t1 MTR_1g013740 34.324 370 219 7 60 426 35 383 7.66e-65 214
MS.gene89048.t1 MTR_1g088160 34.031 382 235 9 59 431 34 407 1.12e-64 214
MS.gene89048.t1 MTR_2g029170 37.353 340 200 10 95 430 31 361 4.29e-64 211
MS.gene89048.t1 MTR_2g058640 34.884 387 217 9 59 429 24 391 1.05e-62 209
MS.gene89048.t1 MTR_5g097860 34.783 322 200 7 58 375 23 338 1.73e-59 198
MS.gene89048.t1 MTR_5g063430 36.213 301 177 6 58 354 23 312 5.77e-59 196
MS.gene89048.t1 MTR_8g010050 32.905 389 205 8 47 431 19 355 3.46e-58 195
MS.gene89048.t1 MTR_8g008700 35.463 313 164 5 120 430 14 290 1.31e-55 186
MS.gene89048.t1 MTR_5g034090 36.014 286 154 5 60 318 121 404 1.97e-55 190
MS.gene89048.t1 MTR_2g100040 30.601 366 191 10 39 399 9 316 7.56e-44 157
MS.gene89048.t1 MTR_8g031180 39.024 205 117 2 204 403 73 274 1.52e-41 149
MS.gene89048.t1 MTR_5g090160 27.366 391 234 12 60 415 44 419 1.57e-23 102
MS.gene89048.t1 MTR_4g124980 25.061 407 254 14 59 429 73 464 6.03e-22 98.6
MS.gene89048.t1 MTR_2g042740 24.408 422 267 15 59 441 55 463 5.01e-21 95.9
MS.gene89048.t1 MTR_7g110710 27.873 409 234 16 60 429 43 429 3.73e-20 93.2
MS.gene89048.t1 MTR_7g110710 27.873 409 234 16 60 429 43 429 4.09e-20 92.8
MS.gene89048.t1 MTR_3g449590 29.268 328 188 13 60 356 47 361 5.19e-20 92.4
MS.gene89048.t1 MTR_4g120730 29.720 286 177 9 158 429 153 428 9.55e-19 88.6
MS.gene89048.t1 MTR_3g096330 24.736 473 280 18 19 443 41 485 8.15e-18 86.7
MS.gene89048.t1 MTR_7g078680 24.566 403 256 14 61 429 56 444 2.49e-17 84.7
MS.gene89048.t1 MTR_7g088550 29.319 191 119 4 158 337 163 348 3.32e-16 80.9
MS.gene89048.t1 MTR_1g100050 24.943 437 268 17 1 402 1 412 3.79e-16 80.9
MS.gene89048.t1 MTR_1g099850 26.389 360 210 16 1 327 6 343 6.72e-16 80.1
MS.gene89048.t1 MTR_1g086030 27.019 359 209 13 60 384 82 421 6.81e-16 80.1
MS.gene89048.t1 MTR_1g086030 27.376 263 162 7 137 384 69 317 1.93e-14 75.1
MS.gene89048.t1 MTR_1g100060 26.255 259 168 8 158 402 206 455 2.76e-14 75.1
MS.gene89048.t1 MTR_8g098840 22.642 371 243 12 61 399 45 403 2.96e-14 75.1
MS.gene89048.t1 MTR_7g092470 24.277 346 211 12 60 375 48 372 3.52e-13 71.6
MS.gene89048.t1 MTR_1g100040 27.604 192 121 5 158 337 169 354 6.04e-13 70.9
MS.gene89048.t1 MTR_8g028725 25.322 233 154 6 158 377 168 393 9.04e-13 70.5
MS.gene89048.t1 MTR_2g435340 28.141 199 119 5 158 341 85 274 7.04e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89048.t1 AT1G80170 58.010 412 170 2 31 441 26 435 0.0 516
MS.gene89048.t1 AT1G80170 57.986 288 119 1 31 318 26 311 1.10e-123 363
MS.gene89048.t1 AT2G41850 49.219 384 184 6 51 432 59 433 1.18e-119 356
MS.gene89048.t1 AT3G07970 50.432 347 168 3 56 401 67 410 9.29e-119 354
MS.gene89048.t1 AT1G70500 44.156 385 212 3 52 435 59 441 1.38e-118 355
MS.gene89048.t1 AT1G23460 44.935 385 209 3 52 435 35 417 1.76e-115 346
MS.gene89048.t1 AT1G23460 44.935 385 209 3 52 435 59 441 2.82e-115 346
MS.gene89048.t1 AT3G57510 45.918 392 197 6 37 426 50 428 3.27e-115 345
MS.gene89048.t1 AT1G56710 44.125 383 201 6 59 430 47 427 6.68e-105 318
MS.gene89048.t1 AT3G15720 41.013 395 216 6 56 444 20 403 1.30e-97 301
MS.gene89048.t1 AT3G15720 41.013 395 216 6 56 444 19 402 1.38e-97 300
MS.gene89048.t1 AT5G14650 40.153 391 223 8 46 432 37 420 1.54e-95 295
MS.gene89048.t1 AT3G15720 40.506 395 215 7 56 444 19 399 4.51e-95 294
MS.gene89048.t1 AT1G02460 42.820 383 203 9 59 427 88 468 9.29e-94 292
MS.gene89048.t1 AT1G05660 38.727 377 223 6 56 431 24 393 1.04e-92 286
MS.gene89048.t1 AT1G05650 38.522 379 225 6 54 431 22 393 3.61e-91 282
MS.gene89048.t1 AT2G43890 39.247 372 215 8 61 430 30 392 1.73e-90 280
MS.gene89048.t1 AT1G48100 37.186 398 236 8 53 439 73 467 2.29e-89 280
MS.gene89048.t1 AT4G01890 42.338 385 200 12 59 426 64 443 3.87e-89 279
MS.gene89048.t1 AT3G26610 36.449 428 258 7 9 426 17 440 6.70e-88 276
MS.gene89048.t1 AT2G43870 42.133 375 207 8 54 426 15 381 2.47e-87 272
MS.gene89048.t1 AT2G43880 40.054 372 214 7 60 430 31 394 9.47e-87 271
MS.gene89048.t1 AT3G59850 40.533 375 214 7 58 430 21 388 1.89e-85 267
MS.gene89048.t1 AT3G59850 40.533 375 214 7 58 430 65 432 3.30e-85 268
MS.gene89048.t1 AT4G35670 38.564 376 221 4 61 434 25 392 3.82e-84 264
MS.gene89048.t1 AT1G65570 38.095 378 224 8 56 430 27 397 1.43e-83 263
MS.gene89048.t1 AT1G10640 39.599 399 208 9 58 427 117 511 1.54e-83 266
MS.gene89048.t1 AT5G17200 39.547 397 204 7 47 419 26 410 3.42e-83 262
MS.gene89048.t1 AT5G44840 36.340 377 231 4 58 432 22 391 4.51e-83 261
MS.gene89048.t1 AT5G27530 37.467 379 219 3 58 434 51 413 2.82e-82 261
MS.gene89048.t1 AT3G15720 40.115 349 192 6 102 444 2 339 3.48e-81 256
MS.gene89048.t1 AT1G60590 36.765 408 216 10 55 427 118 518 4.89e-81 260
MS.gene89048.t1 AT2G43860 39.142 373 218 7 60 430 33 398 5.25e-79 251
MS.gene89048.t1 AT1G78400 37.037 378 226 8 57 429 32 402 5.86e-77 246
MS.gene89048.t1 AT1G17150 36.598 388 233 9 50 431 22 402 2.26e-74 239
MS.gene89048.t1 AT1G02790 35.990 389 226 6 52 429 44 420 1.09e-73 238
MS.gene89048.t1 AT4G18180 37.275 389 221 9 59 429 38 421 6.62e-73 236
MS.gene89048.t1 AT3G07830 36.592 358 216 7 76 429 37 387 8.36e-72 232
MS.gene89048.t1 AT5G44830 35.799 338 199 3 95 431 11 331 2.65e-71 229
MS.gene89048.t1 AT1G80140 37.391 345 201 9 91 430 2 336 2.06e-69 224
MS.gene89048.t1 AT5G48140 35.556 360 220 6 76 431 37 388 3.76e-69 225
MS.gene89048.t1 AT2G15450 34.103 390 240 10 52 431 22 404 6.13e-69 225
MS.gene89048.t1 AT3G07820 35.475 358 220 7 76 429 36 386 8.40e-68 221
MS.gene89048.t1 AT2G15460 34.545 385 235 10 52 426 22 399 9.94e-68 222
MS.gene89048.t1 AT3G07840 36.313 358 217 7 76 429 37 387 1.85e-67 221
MS.gene89048.t1 AT2G43880 40.134 299 171 6 60 357 31 322 2.15e-67 218
MS.gene89048.t1 AT2G33160 35.142 387 238 7 50 429 22 402 1.03e-66 226
MS.gene89048.t1 AT4G32380 35.840 399 239 10 57 448 23 411 1.29e-66 220
MS.gene89048.t1 AT2G15470 33.846 390 241 10 52 431 22 404 6.01e-66 217
MS.gene89048.t1 AT1G43080 33.508 382 238 9 58 430 29 403 8.44e-66 217
MS.gene89048.t1 AT2G26620 32.808 381 242 9 58 431 29 402 1.23e-64 214
MS.gene89048.t1 AT1G43090 33.690 374 232 9 58 422 29 395 8.76e-64 213
MS.gene89048.t1 AT4G35670 38.542 288 169 2 143 430 2 281 3.82e-63 206
MS.gene89048.t1 AT4G13760 31.510 384 245 8 58 431 29 404 4.22e-63 209
MS.gene89048.t1 AT1G43100 33.422 374 233 9 58 422 29 395 8.02e-62 207
MS.gene89048.t1 AT2G40310 31.152 382 249 7 58 431 29 404 3.16e-61 205
MS.gene89048.t1 AT3G14040 35.027 374 232 7 60 429 71 437 1.62e-59 201
MS.gene89048.t1 AT5G39910 37.294 303 164 6 59 356 35 316 3.06e-58 196
MS.gene89048.t1 AT3G07850 34.031 382 241 7 52 429 62 436 7.09e-58 197
MS.gene89048.t1 AT5G14650 36.496 274 168 4 46 318 37 305 3.61e-57 191
MS.gene89048.t1 AT4G32375 38.148 270 159 3 135 403 5 267 4.08e-56 192
MS.gene89048.t1 AT4G32370 37.134 307 174 8 55 351 29 326 1.05e-54 186
MS.gene89048.t1 AT4G32380 36.513 304 179 9 57 356 23 316 2.89e-49 173
MS.gene89048.t1 AT3G62110 29.513 349 197 11 60 373 43 377 2.27e-24 105
MS.gene89048.t1 AT3G62110 29.513 349 197 11 60 373 43 377 2.27e-24 105
MS.gene89048.t1 AT5G41870 27.742 465 262 18 3 429 4 432 1.32e-23 103
MS.gene89048.t1 AT4G33440 29.012 324 175 12 56 341 68 374 3.33e-21 96.3
MS.gene89048.t1 AT3G42950 24.471 425 261 14 59 440 65 472 2.94e-20 93.6
MS.gene89048.t1 AT4G23820 27.394 376 226 10 60 402 41 402 2.94e-20 93.2
MS.gene89048.t1 AT1G19170 24.390 410 254 15 59 429 86 478 1.48e-18 88.6
MS.gene89048.t1 AT5G49215 27.021 433 243 16 49 434 30 436 1.58e-18 88.2
MS.gene89048.t1 AT5G49215 27.021 433 243 16 49 434 32 438 1.90e-18 87.8
MS.gene89048.t1 AT3G48950 24.603 378 226 14 62 399 47 405 2.83e-17 84.3
MS.gene89048.t1 AT3G06770 26.004 473 259 15 5 429 2 431 1.06e-15 79.3
MS.gene89048.t1 AT3G06770 25.949 474 260 15 4 429 2 432 1.17e-15 79.3
MS.gene89048.t1 AT2G23900 23.580 352 221 14 62 378 58 396 1.97e-14 75.5
MS.gene89048.t1 AT4G23500 27.895 190 117 5 158 334 181 363 5.22e-14 74.3
MS.gene89048.t1 AT3G61490 25.407 307 180 11 61 332 46 338 1.41e-13 73.2
MS.gene89048.t1 AT3G61490 25.407 307 180 11 61 332 46 338 1.41e-13 73.2
MS.gene89048.t1 AT3G61490 25.407 307 180 11 61 332 46 338 1.41e-13 73.2
MS.gene89048.t1 AT3G61490 25.828 302 175 11 61 327 159 446 1.48e-13 73.2
MS.gene89048.t1 AT3G61490 25.407 307 180 11 61 332 61 353 1.57e-13 72.8
MS.gene89048.t1 AT3G57790 24.917 301 182 12 60 332 35 319 1.42e-12 70.1
MS.gene89048.t1 AT3G57790 24.917 301 182 12 60 332 35 319 1.42e-12 70.1
MS.gene89048.t1 AT3G06770 26.829 287 184 7 158 429 69 344 3.37e-12 68.2
MS.gene89048.t1 AT3G06770 25.970 335 206 9 126 429 39 362 4.22e-12 67.8
MS.gene89048.t1 AT3G06770 25.970 335 206 9 126 429 39 362 4.22e-12 67.8
MS.gene89048.t1 AT3G16850 25.155 322 192 11 60 346 40 347 1.72e-11 66.2

Find 120 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGGATTCCATCGGTATT+AGG 0.201677 2.4:+2072707 None:intergenic
ATATCCTTCATTAATATTCT+AGG 0.212042 2.4:-2071081 MS.gene89048:CDS
GTTCTTTCCATCACTCATTT+TGG 0.214496 2.4:-2073901 MS.gene89048:CDS
CATCTATACAACACTGATAA+TGG 0.236084 2.4:-2071631 MS.gene89048:CDS
ATCACTGCAGGCAAATTTAA+TGG 0.242128 2.4:+2071038 None:intergenic
TTCAGGCCTTCTTGAAGGTT+TGG 0.258824 2.4:-2073493 MS.gene89048:intron
TAGTATTGATCTATTATTAT+TGG 0.266163 2.4:+2071433 None:intergenic
CACATTCCAGAATATCTTAA+TGG 0.285684 2.4:-2071470 MS.gene89048:CDS
ATTATCAAACTCCCACGTTC+TGG 0.285907 2.4:-2073961 MS.gene89048:CDS
GAAGGTGGAGGGAGAATAGA+TGG 0.297947 2.4:-2073138 MS.gene89048:CDS
AACCCGCCTGGATTTGGATT+TGG 0.305803 2.4:+2073921 None:intergenic
GGAAAGAACCCGCCTGGATT+TGG 0.307981 2.4:+2073915 None:intergenic
TCCATGTGAAGGACTATATC+TGG 0.310839 2.4:-2071010 MS.gene89048:CDS
TCAGGCCTTCTTGAAGGTTT+GGG 0.313872 2.4:-2073492 MS.gene89048:intron
ATCTATACAACACTGATAAT+GGG 0.317699 2.4:-2071630 MS.gene89048:CDS
ATTCAAAATGTAATTGTTGA+TGG 0.333748 2.4:-2071658 MS.gene89048:CDS
CCTGGATTTGGATTTGGATC+TGG 0.334814 2.4:+2073927 None:intergenic
TTTGGATTTGGATCTGGTTC+GGG 0.344983 2.4:+2073933 None:intergenic
ACAGAATTAATAGCAGGATT+TGG 0.350920 2.4:+2070844 None:intergenic
GAAATTGCTTGTTCTCTCTC+TGG 0.353244 2.4:-2073470 MS.gene89048:CDS
ATTTGGATTTGGATCTGGTT+CGG 0.353273 2.4:+2073932 None:intergenic
GGCAAATTTAATGGTTTCTT+CGG 0.366996 2.4:+2071047 None:intergenic
TGTGGATTCCATCGGTATTA+GGG 0.369785 2.4:+2072708 None:intergenic
GATATTCTGGAATGTGATCT+TGG 0.388014 2.4:+2071477 None:intergenic
TCAGAAATTCTTCACGGGTC+TGG 0.389569 2.4:-2071844 MS.gene89048:CDS
AACAATGATATATATAGAAA+TGG 0.400596 2.4:+2074059 None:intergenic
TTGATCTATTATTATTGGAT+TGG 0.401401 2.4:+2071438 None:intergenic
GTGAATCACCTTTCTGTAGA+AGG 0.414133 2.4:-2073156 MS.gene89048:CDS
CACGGTCCACCAATGTCAAT+TGG 0.416662 2.4:+2073401 None:intergenic
CTGGACCACAGGAAATATTT+CGG 0.417209 2.4:+2071819 None:intergenic
GAAATACAAGATCTTATTGT+TGG 0.420722 2.4:-2070957 MS.gene89048:CDS
ACGACATCCATGCAAGAATC+AGG 0.421050 2.4:-2071401 MS.gene89048:intron
TTTAAACCATGCCATACGTC+AGG 0.426062 2.4:+2073207 None:intergenic
TCTGAAAGTCAGAAACCTTA+TGG 0.427392 2.4:-2072819 MS.gene89048:CDS
TTATCAAACTCCCACGTTCT+GGG 0.428059 2.4:-2073960 MS.gene89048:CDS
CTGAGATAGCAATACATTAG+TGG 0.428913 2.4:+2073074 None:intergenic
CCGTGAAGAATTTCTGACTA+TGG 0.429646 2.4:+2071850 None:intergenic
AAAGATAGTGTAATTAGAAC+AGG 0.430176 2.4:-2072659 MS.gene89048:intron
TTTGGCTATTTAGCACCATA+AGG 0.434636 2.4:+2072804 None:intergenic
GGAGTTGATCTTGCAAGATC+TGG 0.438214 2.4:+2073095 None:intergenic
CGAAATATTTCCTGTGGTCC+AGG 0.456840 2.4:-2071818 MS.gene89048:CDS
GCAAATGGATTTACTTCCAC+GGG 0.466116 2.4:-2073179 MS.gene89048:CDS
ATGGTTTAAATAAGCGCAAA+TGG 0.466463 2.4:-2073194 MS.gene89048:CDS
TTTCTTCAATCATACTTTGG+AGG 0.470788 2.4:-2070979 MS.gene89048:CDS
GTGGTCCAGGTCATGGCATA+AGG 0.472549 2.4:-2071805 MS.gene89048:intron
CTTGTCAGTCCAATTGACAT+TGG 0.476571 2.4:-2073410 MS.gene89048:CDS
TGTGCATGGTGGATGAATAA+AGG 0.485885 2.4:+2074015 None:intergenic
GCTTAGGAAAATCAAACGTA+TGG 0.487471 2.4:-2071687 MS.gene89048:CDS
GTCGATCTAAGATCACTTTG+AGG 0.490157 2.4:-2073379 MS.gene89048:CDS
GTTCAGACAGAATTAATAGC+AGG 0.495347 2.4:+2070838 None:intergenic
GTCAGTCCAATTGACATTGG+TGG 0.498328 2.4:-2073407 MS.gene89048:CDS
ATCACTACTTGTCGAAAAGC+AGG 0.499218 2.4:+2070894 None:intergenic
TGGAGGGAGAATAGATGGAA+TGG 0.499731 2.4:-2073133 MS.gene89048:CDS
GGAGGGAGAATAGATGGAAT+GGG 0.507401 2.4:-2073132 MS.gene89048:CDS
GAGAATAGATGGAATGGGAC+AGG 0.519778 2.4:-2073127 MS.gene89048:CDS
CACCTTTCTGTAGAAGGTGG+AGG 0.520732 2.4:-2073150 MS.gene89048:CDS
GATTCCATCGGTATTAGGGC+TGG 0.523054 2.4:+2072712 None:intergenic
ATTTCCTGTGGTCCAGGTCA+TGG 0.524646 2.4:-2071812 MS.gene89048:CDS
CCATAGTCAGAAATTCTTCA+CGG 0.524969 2.4:-2071850 MS.gene89048:CDS
GTTGTGCTTGTGCTTGTGCA+TGG 0.529138 2.4:+2074001 None:intergenic
TTCAATACCTGATTCTTGCA+TGG 0.529530 2.4:+2071394 None:intergenic
AAATTTAATGGTTTCTTCGG+TGG 0.529972 2.4:+2071050 None:intergenic
ATTATGAAAACCATCACCTA+TGG 0.537109 2.4:+2073876 None:intergenic
TCTTATTGTTGGCAAGCTCA+TGG 0.538338 2.4:-2070946 MS.gene89048:CDS
GCGCCACTAACCGTTGGAGC+AGG 0.541200 2.4:+2072964 None:intergenic
CAAGCTCATGGCTCTGCTCA+AGG 0.541272 2.4:-2070934 MS.gene89048:CDS
AGTGATGGAAAGAACCCGCC+TGG 0.541770 2.4:+2073909 None:intergenic
TCGATCTAAGATCACTTTGA+GGG 0.543860 2.4:-2073378 MS.gene89048:intron
TCGGTATTAGGGCTGGAGGC+AGG 0.544994 2.4:+2072719 None:intergenic
CCAGATCCAAATCCAAATCC+AGG 0.547681 2.4:-2073927 MS.gene89048:CDS
CGCAAATGGATTTACTTCCA+CGG 0.548823 2.4:-2073180 MS.gene89048:CDS
ATCCACATTAGTGCTACAAA+AGG 0.548972 2.4:-2072692 MS.gene89048:CDS
CTTGCATTTATGAAAAGTCA+AGG 0.554504 2.4:+2072844 None:intergenic
TTTCACCTTATGCCATGACC+TGG 0.556262 2.4:+2071800 None:intergenic
CGCGTTCACTAGCTGTATGC+GGG 0.558176 2.4:-2072771 MS.gene89048:CDS
TATGCCATGACCTGGACCAC+AGG 0.562132 2.4:+2071808 None:intergenic
GCCATGTCTTCCTGCTCCAA+CGG 0.565057 2.4:-2072974 MS.gene89048:intron
GCCTCCAGCCCTAATACCGA+TGG 0.565150 2.4:-2072716 MS.gene89048:CDS
AATTTCCCAAACCTTCAAGA+AGG 0.566327 2.4:+2073487 None:intergenic
CATAGTCAGAAATTCTTCAC+GGG 0.571736 2.4:-2071849 MS.gene89048:CDS
AGTTCCTAGAATATTAATGA+AGG 0.573685 2.4:+2071077 None:intergenic
TCCCTCCACCTTCTACAGAA+AGG 0.574731 2.4:+2073148 None:intergenic
CACCACGAGACCCTGACGTA+TGG 0.576199 2.4:-2073218 MS.gene89048:CDS
GTTCGGGTTGACCCAGAACG+TGG 0.577885 2.4:+2073949 None:intergenic
CTTAGGAAAATCAAACGTAT+GGG 0.579944 2.4:-2071686 MS.gene89048:CDS
ACATGGAGAAGCATCACTGC+AGG 0.583543 2.4:+2071026 None:intergenic
ACCTTTCTGTAGAAGGTGGA+GGG 0.590327 2.4:-2073149 MS.gene89048:CDS
TCCAGATATAGTCCTTCACA+TGG 0.593470 2.4:+2071009 None:intergenic
GCAGACTTCAGCTGTTCAAG+TGG 0.594772 2.4:-2071109 MS.gene89048:intron
TATGGCACCAAAATGAGTGA+TGG 0.595270 2.4:+2073894 None:intergenic
ACCGTTGGAGCAGGAAGACA+TGG 0.595442 2.4:+2072973 None:intergenic
CTACTTGTCGAAAAGCAGGC+AGG 0.598107 2.4:+2070898 None:intergenic
TGCCATACGTCAGGGTCTCG+TGG 0.598890 2.4:+2073216 None:intergenic
ATCCAAATCCAAATCCAGGC+GGG 0.599305 2.4:-2073923 MS.gene89048:CDS
GGTGAGAATCAAAACATGGC+AGG 0.600627 2.4:-2071608 MS.gene89048:intron
ATAATAGAGTCAAGTCCTTG+TGG 0.608306 2.4:+2073979 None:intergenic
TTAAACCATGCCATACGTCA+GGG 0.612652 2.4:+2073208 None:intergenic
TCCATCGGTATTAGGGCTGG+AGG 0.613023 2.4:+2072715 None:intergenic
AGCACTAATGTGGATTCCAT+CGG 0.625910 2.4:+2072700 None:intergenic
TCTATACAACACTGATAATG+GGG 0.627017 2.4:-2071629 MS.gene89048:CDS
TCGCGTTCACTAGCTGTATG+CGG 0.627303 2.4:-2072772 MS.gene89048:CDS
CGAGACCCTGACGTATGGCA+TGG 0.627441 2.4:-2073213 MS.gene89048:CDS
AATCACCTTTCTGTAGAAGG+TGG 0.627809 2.4:-2073153 MS.gene89048:CDS
CTTGTCGAAAAGCAGGCAGG+AGG 0.628985 2.4:+2070901 None:intergenic
TAGATGGAATGGGACAGGAA+TGG 0.629282 2.4:-2073122 MS.gene89048:CDS
ATGGAATGGGACAGGAATGG+TGG 0.629500 2.4:-2073119 MS.gene89048:CDS
AGTGATGCTTCTCCATGTGA+AGG 0.638862 2.4:-2071021 MS.gene89048:CDS
ATTCTGGAATGTGATCTTGG+AGG 0.640527 2.4:+2071480 None:intergenic
GTGCTTGTGCTTGTGCATGG+TGG 0.641670 2.4:+2074004 None:intergenic
GAATAAAGGAACAAGTACAA+TGG 0.643499 2.4:+2074029 None:intergenic
CAGACTTCAGCTGTTCAAGT+GGG 0.648661 2.4:-2071108 MS.gene89048:CDS
TGGATCCGAAATATTTCCTG+TGG 0.650180 2.4:-2071824 MS.gene89048:CDS
TTGTCGAAAAGCAGGCAGGA+GGG 0.655120 2.4:+2070902 None:intergenic
CAAGCACAAGCACAACCACA+AGG 0.663127 2.4:-2073994 MS.gene89048:CDS
ATGGGGTGAGAATCAAAACA+TGG 0.670172 2.4:-2071612 MS.gene89048:CDS
CAGAAAGGTGATTCACCCCG+TGG 0.688997 2.4:+2073163 None:intergenic
TTCGGGTTGACCCAGAACGT+GGG 0.689501 2.4:+2073950 None:intergenic
GATCCAAATCCAAATCCAGG+CGG 0.712455 2.4:-2073924 MS.gene89048:CDS
CAAATGGATTTACTTCCACG+GGG 0.737068 2.4:-2073178 MS.gene89048:CDS
AAAGTGATCTTAGATCGACA+CGG 0.771784 2.4:+2073383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTGTAAATCATTTATA+AGG - chr2.4:2072891-2072910 MS.gene89048:intron 15.0%
!! AACAATGATATATATAGAAA+TGG + chr2.4:2070859-2070878 None:intergenic 15.0%
!! ATTATACAATTTATACTACT+TGG + chr2.4:2073170-2073189 None:intergenic 15.0%
!! TTTAAATAGTAATAACATGT+TGG - chr2.4:2072357-2072376 MS.gene89048:intron 15.0%
!!! AAATGATTTACACATTTTTA+TGG + chr2.4:2072888-2072907 None:intergenic 15.0%
!!! ACTTGTTTTTAGTAAAATAT+AGG - chr2.4:2072417-2072436 MS.gene89048:intron 15.0%
!!! ATTTTTTTATCTATCTTTTC+AGG - chr2.4:2071405-2071424 MS.gene89048:CDS 15.0%
!!! CATTATTATTTTTGAATGTA+TGG - chr2.4:2072705-2072724 MS.gene89048:CDS 15.0%
!!! TAGTATTGATCTATTATTAT+TGG + chr2.4:2073485-2073504 None:intergenic 15.0%
!!! TTATTTGTTTTATAGATCTT+AGG - chr2.4:2071663-2071682 MS.gene89048:CDS 15.0%
!! ACAACTGAAAATATCATATA+GGG + chr2.4:2072760-2072779 None:intergenic 20.0%
!! ATATCCTTCATTAATATTCT+AGG - chr2.4:2073834-2073853 MS.gene89048:intron 20.0%
!! ATTCAAAATGTAATTGTTGA+TGG - chr2.4:2073257-2073276 MS.gene89048:intron 20.0%
!! CAAATCATTCAAAACTATAT+AGG + chr2.4:2073640-2073659 None:intergenic 20.0%
!! TAACAATGAATAAACTTTGT+AGG - chr2.4:2072461-2072480 MS.gene89048:intron 20.0%
!! TTGATCTATTATTATTGGAT+TGG + chr2.4:2073480-2073499 None:intergenic 20.0%
!! TTTCAATGTTACATTATTGT+TGG + chr2.4:2072863-2072882 None:intergenic 20.0%
!!! ACAAGAAAAGTTTTTTCATA+TGG + chr2.4:2071490-2071509 None:intergenic 20.0%
!!! ATTTTTCTTCAATCATACTT+TGG - chr2.4:2073933-2073952 MS.gene89048:CDS 20.0%
!!! GAATTTTAAGATATTTTTGC+TGG - chr2.4:2073541-2073560 MS.gene89048:intron 20.0%
! AAAGATAGTGTAATTAGAAC+AGG - chr2.4:2072256-2072275 MS.gene89048:intron 25.0%
! AATAAACTTTGTAGGCATAA+GGG - chr2.4:2072469-2072488 MS.gene89048:intron 25.0%
! AATGAAAGTAGTCATTTCTA+TGG + chr2.4:2072943-2072962 None:intergenic 25.0%
! AGTTCCTAGAATATTAATGA+AGG + chr2.4:2073841-2073860 None:intergenic 25.0%
! ATCTATACAACACTGATAAT+GGG - chr2.4:2073285-2073304 MS.gene89048:intron 25.0%
! CACAACTGAAAATATCATAT+AGG + chr2.4:2072761-2072780 None:intergenic 25.0%
! CTTGATCATTAAGTTTATTC+TGG + chr2.4:2072983-2073002 None:intergenic 25.0%
! GAAATACAAGATCTTATTGT+TGG - chr2.4:2073958-2073977 MS.gene89048:CDS 25.0%
! GGAAATGTTTAATGTTGTAA+GGG - chr2.4:2072796-2072815 MS.gene89048:CDS 25.0%
! TGAAAAATAGGTTCAAGTAT+CGG + chr2.4:2073199-2073218 None:intergenic 25.0%
! TGAAACTTCATTTACTATGT+AGG - chr2.4:2072048-2072067 MS.gene89048:intron 25.0%
! TGGAAATGTTTAATGTTGTA+AGG - chr2.4:2072795-2072814 MS.gene89048:CDS 25.0%
!! ACAGAAATTCGTTTAAAATC+CGG + chr2.4:2071589-2071608 None:intergenic 25.0%
!! CATTTTCCATTAAGATATTC+TGG + chr2.4:2073454-2073473 None:intergenic 25.0%
!! TCATTAATTTGAATCCTTGT+TGG + chr2.4:2073735-2073754 None:intergenic 25.0%
!!! ATGTTCACTTTTAGTTCATT+AGG - chr2.4:2073141-2073160 MS.gene89048:CDS 25.0%
!!! TTACCTTGTTTTTTACACAA+GGG - chr2.4:2072568-2072587 MS.gene89048:intron 25.0%
!!! TTATTGTTGGTTTATTGTTC+AGG + chr2.4:2072850-2072869 None:intergenic 25.0%
AAATTTAATGGTTTCTTCGG+TGG + chr2.4:2073868-2073887 None:intergenic 30.0%
AATCCCTTGTGTAAAAAACA+AGG + chr2.4:2072574-2072593 None:intergenic 30.0%
ACAGAATTAATAGCAGGATT+TGG + chr2.4:2074074-2074093 None:intergenic 30.0%
ACATCAAAAGTCCAAATTCA+AGG + chr2.4:2071097-2071116 None:intergenic 30.0%
ACCATGATATACTGATAAAC+AGG - chr2.4:2071376-2071395 MS.gene89048:intron 30.0%
ACCTGTTTATCAGTATATCA+TGG + chr2.4:2071380-2071399 None:intergenic 30.0%
ACTGACATGATTATAATCGA+TGG + chr2.4:2073691-2073710 None:intergenic 30.0%
ATATTCATTCATAGTCCACA+AGG - chr2.4:2071207-2071226 MS.gene89048:intron 30.0%
ATGGTTTAAATAAGCGCAAA+TGG - chr2.4:2071721-2071740 MS.gene89048:intron 30.0%
ATTATGAAAACCATCACCTA+TGG + chr2.4:2071042-2071061 None:intergenic 30.0%
ATTTATAGCCACTGAATGTT+AGG - chr2.4:2071286-2071305 MS.gene89048:intron 30.0%
CACATTCCAGAATATCTTAA+TGG - chr2.4:2073445-2073464 MS.gene89048:CDS 30.0%
CATCAAAAGTCCAAATTCAA+GGG + chr2.4:2071096-2071115 None:intergenic 30.0%
CATCTATACAACACTGATAA+TGG - chr2.4:2073284-2073303 MS.gene89048:intron 30.0%
CTTAGGAAAATCAAACGTAT+GGG - chr2.4:2073229-2073248 MS.gene89048:CDS 30.0%
CTTGCATTTATGAAAAGTCA+AGG + chr2.4:2072074-2072093 None:intergenic 30.0%
CTTGTGTAAAAAACAAGGTA+AGG + chr2.4:2072569-2072588 None:intergenic 30.0%
GAATAAACTTTGTAGGCATA+AGG - chr2.4:2072468-2072487 MS.gene89048:intron 30.0%
GAATAAAGGAACAAGTACAA+TGG + chr2.4:2070889-2070908 None:intergenic 30.0%
GGCAAATTTAATGGTTTCTT+CGG + chr2.4:2073871-2073890 None:intergenic 30.0%
TATAAGATGCCTACAAAGTA+GGG + chr2.4:2072663-2072682 None:intergenic 30.0%
TTAATGTTGTAAGGGAGATA+GGG - chr2.4:2072804-2072823 MS.gene89048:CDS 30.0%
TTATAAGATGCCTACAAAGT+AGG + chr2.4:2072664-2072683 None:intergenic 30.0%
TTTAATGTTGTAAGGGAGAT+AGG - chr2.4:2072803-2072822 MS.gene89048:CDS 30.0%
TTTCTTCAATCATACTTTGG+AGG - chr2.4:2073936-2073955 MS.gene89048:CDS 30.0%
! AATGCTAGTGTTACTCATAT+TGG - chr2.4:2072301-2072320 MS.gene89048:intron 30.0%
! ATACTGTTTTCCCTTGAATT+TGG - chr2.4:2071083-2071102 MS.gene89048:CDS 30.0%
! GTTGTGTAGCTTTTAAACTT+TGG - chr2.4:2072775-2072794 MS.gene89048:CDS 30.0%
! TCTATACAACACTGATAATG+GGG - chr2.4:2073286-2073305 MS.gene89048:intron 30.0%
!! ATTCTGGAACTTCTACAAAA+CGG + chr2.4:2072967-2072986 None:intergenic 30.0%
!! TTGAACCTATTTTTCAGCAT+TGG - chr2.4:2073203-2073222 MS.gene89048:CDS 30.0%
!!! ATTTTGAAGTCATCATCACT+TGG + chr2.4:2071910-2071929 None:intergenic 30.0%
!!! CTTACCTTGTTTTTTACACA+AGG - chr2.4:2072567-2072586 MS.gene89048:intron 30.0%
AAAGTGATCTTAGATCGACA+CGG + chr2.4:2071535-2071554 None:intergenic 35.0%
AACTTGCAAAAACATCCTTG+TGG + chr2.4:2071225-2071244 None:intergenic 35.0%
AATTTCCCAAACCTTCAAGA+AGG + chr2.4:2071431-2071450 None:intergenic 35.0%
ACAAATCACCTAACATTCAG+TGG + chr2.4:2071297-2071316 None:intergenic 35.0%
ACTAGCATTGCATTAGATTG+AGG + chr2.4:2072290-2072309 None:intergenic 35.0%
AGCTACCAATGCTGAAAAAT+AGG + chr2.4:2073211-2073230 None:intergenic 35.0%
ATAAGATGCCTACAAAGTAG+GGG + chr2.4:2072662-2072681 None:intergenic 35.0%
ATAATAGAGTCAAGTCCTTG+TGG + chr2.4:2070939-2070958 None:intergenic 35.0%
ATCACTGCAGGCAAATTTAA+TGG + chr2.4:2073880-2073899 None:intergenic 35.0%
ATCCACATTAGTGCTACAAA+AGG - chr2.4:2072223-2072242 MS.gene89048:intron 35.0%
ATTGTTATCACGTGACTGAA+AGG + chr2.4:2072620-2072639 None:intergenic 35.0%
ATTTGGATTTGGATCTGGTT+CGG + chr2.4:2070986-2071005 None:intergenic 35.0%
CATACAATACACCAAATGGT+GGG + chr2.4:2072543-2072562 None:intergenic 35.0%
CATAGTCAGAAATTCTTCAC+GGG - chr2.4:2073066-2073085 MS.gene89048:intron 35.0%
CCATAGTCAGAAATTCTTCA+CGG - chr2.4:2073065-2073084 MS.gene89048:intron 35.0%
CTGAGATAGCAATACATTAG+TGG + chr2.4:2071844-2071863 None:intergenic 35.0%
GCTTAGGAAAATCAAACGTA+TGG - chr2.4:2073228-2073247 MS.gene89048:CDS 35.0%
GTCATTTCTATGGTGTTTCA+AGG + chr2.4:2072933-2072952 None:intergenic 35.0%
TAATGTTGTAAGGGAGATAG+GGG - chr2.4:2072805-2072824 MS.gene89048:CDS 35.0%
TCAATAGACTTGTCATCACT+AGG + chr2.4:2073380-2073399 None:intergenic 35.0%
TCTGAAAGTCAGAAACCTTA+TGG - chr2.4:2072096-2072115 MS.gene89048:intron 35.0%
TGTCTCATTGAGCTAGATAT+AGG - chr2.4:2071314-2071333 MS.gene89048:intron 35.0%
TTCAATACCTGATTCTTGCA+TGG + chr2.4:2073524-2073543 None:intergenic 35.0%
TTTGGCTATTTAGCACCATA+AGG + chr2.4:2072114-2072133 None:intergenic 35.0%
! GTTCTTTCCATCACTCATTT+TGG - chr2.4:2071014-2071033 MS.gene89048:CDS 35.0%
! TCGATCTAAGATCACTTTGA+GGG - chr2.4:2071537-2071556 MS.gene89048:intron 35.0%
! TGGACTTTTGATGTTGTTGT+TGG - chr2.4:2071103-2071122 MS.gene89048:CDS 35.0%
! TGGTTTTCATAATGACACTC+AGG - chr2.4:2071049-2071068 MS.gene89048:CDS 35.0%
!! ACAAGGATGTTTTTGCAAGT+TGG - chr2.4:2071224-2071243 MS.gene89048:intron 35.0%
!! CAAGGATGTTTTTGCAAGTT+GGG - chr2.4:2071225-2071244 MS.gene89048:intron 35.0%
!! GATATTCTGGAATGTGATCT+TGG + chr2.4:2073441-2073460 None:intergenic 35.0%
!! TGTTGGTTTATTGTTCAGGT+TGG + chr2.4:2072846-2072865 None:intergenic 35.0%
!!! CAGACAGTGATTTTTTTGAG+AGG - chr2.4:2073610-2073629 MS.gene89048:intron 35.0%
!!! TTTTTCAGCATTGGTAGCTT+AGG - chr2.4:2073212-2073231 MS.gene89048:CDS 35.0%
AATCACCTTTCTGTAGAAGG+TGG - chr2.4:2071762-2071781 MS.gene89048:intron 40.0%
AATCCTTGTTGGAGATTGAC+AGG + chr2.4:2073724-2073743 None:intergenic 40.0%
AATGTTGTAAGGGAGATAGG+GGG - chr2.4:2072806-2072825 MS.gene89048:CDS 40.0%
ACTGCATTATGTCCCATTTC+AGG - chr2.4:2073028-2073047 MS.gene89048:intron 40.0%
AGCACTAATGTGGATTCCAT+CGG + chr2.4:2072218-2072237 None:intergenic 40.0%
ATCACTACTTGTCGAAAAGC+AGG + chr2.4:2074024-2074043 None:intergenic 40.0%
ATGCAGTCATCACCTGAAAT+GGG + chr2.4:2073043-2073062 None:intergenic 40.0%
ATGGGGTGAGAATCAAAACA+TGG - chr2.4:2073303-2073322 MS.gene89048:intron 40.0%
ATGTGGATTCCATCGGTATT+AGG + chr2.4:2072211-2072230 None:intergenic 40.0%
ATTATCAAACTCCCACGTTC+TGG - chr2.4:2070954-2070973 MS.gene89048:CDS 40.0%
ATTCCTGTCAATCTCCAACA+AGG - chr2.4:2073718-2073737 MS.gene89048:intron 40.0%
CCGTGAAGAATTTCTGACTA+TGG + chr2.4:2073068-2073087 None:intergenic 40.0%
CTGGACCACAGGAAATATTT+CGG + chr2.4:2073099-2073118 None:intergenic 40.0%
CTTGTCAGTCCAATTGACAT+TGG - chr2.4:2071505-2071524 MS.gene89048:intron 40.0%
GAAATTGCTTGTTCTCTCTC+TGG - chr2.4:2071445-2071464 MS.gene89048:CDS 40.0%
GCATACAATACACCAAATGG+TGG + chr2.4:2072544-2072563 None:intergenic 40.0%
GCTGCATACAATACACCAAA+TGG + chr2.4:2072547-2072566 None:intergenic 40.0%
GTGAATCACCTTTCTGTAGA+AGG - chr2.4:2071759-2071778 MS.gene89048:intron 40.0%
GTTAGTGGCGCTTCAAAATA+TGG - chr2.4:2071963-2071982 MS.gene89048:intron 40.0%
TAAGATGCCTACAAAGTAGG+GGG + chr2.4:2072661-2072680 None:intergenic 40.0%
TATGGCACCAAAATGAGTGA+TGG + chr2.4:2071024-2071043 None:intergenic 40.0%
TCCAGATATAGTCCTTCACA+TGG + chr2.4:2073909-2073928 None:intergenic 40.0%
TCCATGTGAAGGACTATATC+TGG - chr2.4:2073905-2073924 MS.gene89048:CDS 40.0%
TCTTATTGTTGGCAAGCTCA+TGG - chr2.4:2073969-2073988 MS.gene89048:CDS 40.0%
TGGATCCGAAATATTTCCTG+TGG - chr2.4:2073091-2073110 MS.gene89048:CDS 40.0%
TGTGGATTCCATCGGTATTA+GGG + chr2.4:2072210-2072229 None:intergenic 40.0%
TTAAACCATGCCATACGTCA+GGG + chr2.4:2071710-2071729 None:intergenic 40.0%
TTATCAAACTCCCACGTTCT+GGG - chr2.4:2070955-2070974 MS.gene89048:CDS 40.0%
TTTAAACCATGCCATACGTC+AGG + chr2.4:2071711-2071730 None:intergenic 40.0%
! CAAATGGATTTACTTCCACG+GGG - chr2.4:2071737-2071756 MS.gene89048:intron 40.0%
! CAAGAGTGTGTGAAATCTAC+CGG - chr2.4:2071567-2071586 MS.gene89048:intron 40.0%
! CACCTTTTGTAGCACTAATG+TGG + chr2.4:2072228-2072247 None:intergenic 40.0%
! CGCAAATGGATTTACTTCCA+CGG - chr2.4:2071735-2071754 MS.gene89048:intron 40.0%
! GAGTCGAGCCAAATTTTCAA+GGG - chr2.4:2073398-2073417 MS.gene89048:CDS 40.0%
! GCAAATGGATTTACTTCCAC+GGG - chr2.4:2071736-2071755 MS.gene89048:intron 40.0%
! GTCGATCTAAGATCACTTTG+AGG - chr2.4:2071536-2071555 MS.gene89048:intron 40.0%
! TGAGTCGAGCCAAATTTTCA+AGG - chr2.4:2073397-2073416 MS.gene89048:CDS 40.0%
! TTTGGATTTGGATCTGGTTC+GGG + chr2.4:2070985-2071004 None:intergenic 40.0%
!! ATCTTTTCAGGCCTTCTTGA+AGG - chr2.4:2071417-2071436 MS.gene89048:CDS 40.0%
!! ATTCTGGAATGTGATCTTGG+AGG + chr2.4:2073438-2073457 None:intergenic 40.0%
!! TGTGCATGGTGGATGAATAA+AGG + chr2.4:2070903-2070922 None:intergenic 40.0%
!!! ATCACTCATTTTGGTGCCAT+AGG - chr2.4:2071023-2071042 MS.gene89048:CDS 40.0%
!!! TGAACGCGATGTGCATTTTT+TGG + chr2.4:2072132-2072151 None:intergenic 40.0%
ACCTTTCTGTAGAAGGTGGA+GGG - chr2.4:2071766-2071785 MS.gene89048:intron 45.0%
ACGACATCCATGCAAGAATC+AGG - chr2.4:2073514-2073533 MS.gene89048:intron 45.0%
AGTGATGCTTCTCCATGTGA+AGG - chr2.4:2073894-2073913 MS.gene89048:CDS 45.0%
ATCCAAATCCAAATCCAGGC+GGG - chr2.4:2070992-2071011 MS.gene89048:CDS 45.0%
CACTCCCACCCTTGAAAATT+TGG + chr2.4:2073409-2073428 None:intergenic 45.0%
CAGACTTCAGCTGTTCAAGT+GGG - chr2.4:2073807-2073826 MS.gene89048:intron 45.0%
CATATGCAATGTCTGGGAAG+GGG - chr2.4:2072516-2072535 MS.gene89048:intron 45.0%
CCAGATCCAAATCCAAATCC+AGG - chr2.4:2070988-2071007 MS.gene89048:CDS 45.0%
CCTGGATTTGGATTTGGATC+TGG + chr2.4:2070991-2071010 None:intergenic 45.0%
CGAAATATTTCCTGTGGTCC+AGG - chr2.4:2073097-2073116 MS.gene89048:CDS 45.0%
CGGTAGATTTCACACACTCT+TGG + chr2.4:2071569-2071588 None:intergenic 45.0%
CTTCCCAGACATTGCATATG+CGG + chr2.4:2072516-2072535 None:intergenic 45.0%
GAGAATAGATGGAATGGGAC+AGG - chr2.4:2071788-2071807 MS.gene89048:intron 45.0%
GATCCAAATCCAAATCCAGG+CGG - chr2.4:2070991-2071010 MS.gene89048:CDS 45.0%
GATGCAGTCATCACCTGAAA+TGG + chr2.4:2073044-2073063 None:intergenic 45.0%
GCATATGCAATGTCTGGGAA+GGG - chr2.4:2072515-2072534 MS.gene89048:intron 45.0%
GGAGGGAGAATAGATGGAAT+GGG - chr2.4:2071783-2071802 MS.gene89048:intron 45.0%
GGTGAGAATCAAAACATGGC+AGG - chr2.4:2073307-2073326 MS.gene89048:intron 45.0%
GTCAGTCCAATTGACATTGG+TGG - chr2.4:2071508-2071527 MS.gene89048:intron 45.0%
TAGATGGAATGGGACAGGAA+TGG - chr2.4:2071793-2071812 MS.gene89048:intron 45.0%
TCAGAAATTCTTCACGGGTC+TGG - chr2.4:2073071-2073090 MS.gene89048:intron 45.0%
TCAGGCCTTCTTGAAGGTTT+GGG - chr2.4:2071423-2071442 MS.gene89048:CDS 45.0%
TGGAGGGAGAATAGATGGAA+TGG - chr2.4:2071782-2071801 MS.gene89048:intron 45.0%
TTCAGGCCTTCTTGAAGGTT+TGG - chr2.4:2071422-2071441 MS.gene89048:CDS 45.0%
TTCCCAGACATTGCATATGC+GGG + chr2.4:2072515-2072534 None:intergenic 45.0%
TTTCACCTTATGCCATGACC+TGG + chr2.4:2073118-2073137 None:intergenic 45.0%
! GGAGTTGATCTTGCAAGATC+TGG + chr2.4:2071823-2071842 None:intergenic 45.0%
!! CAAATTTTCAAGGGTGGGAG+TGG - chr2.4:2073407-2073426 MS.gene89048:CDS 45.0%
!! CGAGCCAAATTTTCAAGGGT+GGG - chr2.4:2073402-2073421 MS.gene89048:CDS 45.0%
!! TCGAGCCAAATTTTCAAGGG+TGG - chr2.4:2073401-2073420 MS.gene89048:CDS 45.0%
!!! CATTTTGGTGCCATAGGTGA+TGG - chr2.4:2071029-2071048 MS.gene89048:CDS 45.0%
AACCCGCCTGGATTTGGATT+TGG + chr2.4:2070997-2071016 None:intergenic 50.0%
ATGGAATGGGACAGGAATGG+TGG - chr2.4:2071796-2071815 MS.gene89048:intron 50.0%
ATTTCCTGTGGTCCAGGTCA+TGG - chr2.4:2073103-2073122 MS.gene89048:CDS 50.0%
CAAGCACAAGCACAACCACA+AGG - chr2.4:2070921-2070940 MS.gene89048:CDS 50.0%
CACCTTTCTGTAGAAGGTGG+AGG - chr2.4:2071765-2071784 MS.gene89048:intron 50.0%
CACGGTCCACCAATGTCAAT+TGG + chr2.4:2071517-2071536 None:intergenic 50.0%
CAGGAAGACATGGCTGCAAA+AGG + chr2.4:2071935-2071954 None:intergenic 50.0%
CGCATATGCAATGTCTGGGA+AGG - chr2.4:2072514-2072533 MS.gene89048:intron 50.0%
CTACTTGTCGAAAAGCAGGC+AGG + chr2.4:2074020-2074039 None:intergenic 50.0%
CTCCCGCATATGCAATGTCT+GGG - chr2.4:2072510-2072529 MS.gene89048:intron 50.0%
GAAGACTCCCCCTACTTTGT+AGG - chr2.4:2072651-2072670 MS.gene89048:intron 50.0%
GAAGGTGGAGGGAGAATAGA+TGG - chr2.4:2071777-2071796 MS.gene89048:intron 50.0%
GATTCCATCGGTATTAGGGC+TGG + chr2.4:2072206-2072225 None:intergenic 50.0%
GCAGACTTCAGCTGTTCAAG+TGG - chr2.4:2073806-2073825 MS.gene89048:intron 50.0%
GTTGTGCTTGTGCTTGTGCA+TGG + chr2.4:2070917-2070936 None:intergenic 50.0%
TCCCTCCACCTTCTACAGAA+AGG + chr2.4:2071770-2071789 None:intergenic 50.0%
TCGCGTTCACTAGCTGTATG+CGG - chr2.4:2072143-2072162 MS.gene89048:intron 50.0%
TGTAAGGGAGATAGGGGGAA+AGG - chr2.4:2072811-2072830 MS.gene89048:CDS 50.0%
TTGTCGAAAAGCAGGCAGGA+GGG + chr2.4:2074016-2074035 None:intergenic 50.0%
! TGCGGGAGCTTTAGTGCATT+AGG + chr2.4:2072498-2072517 None:intergenic 50.0%
! TTTGAAGCGCCACTAACCGT+TGG + chr2.4:2071960-2071979 None:intergenic 50.0%
!! ACATGGAGAAGCATCACTGC+AGG + chr2.4:2073892-2073911 None:intergenic 50.0%
ACCGTTGGAGCAGGAAGACA+TGG + chr2.4:2071945-2071964 None:intergenic 55.0%
CAGAAAGGTGATTCACCCCG+TGG + chr2.4:2071755-2071774 None:intergenic 55.0%
CGCGTTCACTAGCTGTATGC+GGG - chr2.4:2072144-2072163 MS.gene89048:intron 55.0%
CTTCCTGCTCCAACGGTTAG+TGG - chr2.4:2071948-2071967 MS.gene89048:intron 55.0%
CTTGTCGAAAAGCAGGCAGG+AGG + chr2.4:2074017-2074036 None:intergenic 55.0%
GCCATGTCTTCCTGCTCCAA+CGG - chr2.4:2071941-2071960 MS.gene89048:intron 55.0%
GCTCCCGCATATGCAATGTC+TGG - chr2.4:2072509-2072528 MS.gene89048:intron 55.0%
GGAAAGAACCCGCCTGGATT+TGG + chr2.4:2071003-2071022 None:intergenic 55.0%
GTGCTTGTGCTTGTGCATGG+TGG + chr2.4:2070914-2070933 None:intergenic 55.0%
GTGGTCCAGGTCATGGCATA+AGG - chr2.4:2073110-2073129 MS.gene89048:CDS 55.0%
TATGCCATGACCTGGACCAC+AGG + chr2.4:2073110-2073129 None:intergenic 55.0%
TCCATCGGTATTAGGGCTGG+AGG + chr2.4:2072203-2072222 None:intergenic 55.0%
! AGTGATGGAAAGAACCCGCC+TGG + chr2.4:2071009-2071028 None:intergenic 55.0%
! CAAGCTCATGGCTCTGCTCA+AGG - chr2.4:2073981-2074000 MS.gene89048:CDS 55.0%
!! TTCGGGTTGACCCAGAACGT+GGG + chr2.4:2070968-2070987 None:intergenic 55.0%
CACCACGAGACCCTGACGTA+TGG - chr2.4:2071697-2071716 MS.gene89048:CDS 60.0%
CGAGACCCTGACGTATGGCA+TGG - chr2.4:2071702-2071721 MS.gene89048:intron 60.0%
GCCTCCAGCCCTAATACCGA+TGG - chr2.4:2072199-2072218 MS.gene89048:intron 60.0%
TCGGTATTAGGGCTGGAGGC+AGG + chr2.4:2072199-2072218 None:intergenic 60.0%
TGCCATACGTCAGGGTCTCG+TGG + chr2.4:2071702-2071721 None:intergenic 60.0%
TGGGAAGGGGTCCCACCATT+TGG - chr2.4:2072529-2072548 MS.gene89048:intron 60.0%
!! GTTCGGGTTGACCCAGAACG+TGG + chr2.4:2070969-2070988 None:intergenic 60.0%
GCGCCACTAACCGTTGGAGC+AGG + chr2.4:2071954-2071973 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 2070840 2074097 2070840 ID=MS.gene89048
chr2.4 mRNA 2070840 2074097 2070840 ID=MS.gene89048.t1;Parent=MS.gene89048
chr2.4 exon 2073867 2074097 2073867 ID=MS.gene89048.t1.exon1;Parent=MS.gene89048.t1
chr2.4 CDS 2073867 2074097 2073867 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2073379 2073510 2073379 ID=MS.gene89048.t1.exon2;Parent=MS.gene89048.t1
chr2.4 CDS 2073379 2073510 2073379 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2073089 2073259 2073089 ID=MS.gene89048.t1.exon3;Parent=MS.gene89048.t1
chr2.4 CDS 2073089 2073259 2073089 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2072975 2072995 2072975 ID=MS.gene89048.t1.exon4;Parent=MS.gene89048.t1
chr2.4 CDS 2072975 2072995 2072975 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2072660 2072867 2072660 ID=MS.gene89048.t1.exon5;Parent=MS.gene89048.t1
chr2.4 CDS 2072660 2072867 2072660 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2071806 2071887 2071806 ID=MS.gene89048.t1.exon6;Parent=MS.gene89048.t1
chr2.4 CDS 2071806 2071887 2071806 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2071609 2071717 2071609 ID=MS.gene89048.t1.exon7;Parent=MS.gene89048.t1
chr2.4 CDS 2071609 2071717 2071609 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2071402 2071518 2071402 ID=MS.gene89048.t1.exon8;Parent=MS.gene89048.t1
chr2.4 CDS 2071402 2071518 2071402 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
chr2.4 exon 2070840 2071127 2070840 ID=MS.gene89048.t1.exon9;Parent=MS.gene89048.t1
chr2.4 CDS 2070840 2071127 2070840 ID=cds.MS.gene89048.t1;Parent=MS.gene89048.t1
Gene Sequence

>MS.gene89048

ATGAGATCTTCTTCTTCCATTTCTATATATATCATTGTTATTATCTCCATTGTACTTGTTCCTTTATTCATCCACCATGCACAAGCACAAGCACAACCACAAGGACTTGACTCTATTATCAAACTCCCACGTTCTGGGTCAACCCGAACCAGATCCAAATCCAAATCCAGGCGGGTTCTTTCCATCACTCATTTTGGTGCCATAGGTGATGGTTTTCATAATGACACTCAGGTATTAATTATGATACTGTTTTCCCTTGAATTTGGACTTTTGATGTTGTTGTTGGTACATTTTTGTTAATGATTTTTATCATGTACAAAATGTATTTGTTGTTCATTCACAAATGCATCATAGTGAAATGTAAATGATATTCATTCATAGTCCACAAGGATGTTTTTGCAAGTTGGGTGTTTCTTTTTAAAATGTGAGCATAATAGAGAATTTTGATTTATAGCCACTGAATGTTAGGTGATTTGTCTCATTGAGCTAGATATAGGATAAGTAAATTTTAGAATCTTCATCAATGATACTTTGTTACCATGATATACTGATAAACAGGTTATTAATTTTTTTATCTATCTTTTCAGGCCTTCTTGAAGGTTTGGGAAATTGCTTGTTCTCTCTCTGGATTCATCAATATAGTTTTTCCATATGAAAAAACTTTTCTTGTCAGTCCAATTGACATTGGTGGACCGTGTCGATCTAAGATCACTTTGAGGGTAAGCACCAAGAGTGTGTGAAATCTACCGGATTTTAAACGAATTTCTGTCATATGTATCATTCAATTCTTGAATGAAATGTGTCGTATTGAAAATGTTTATTATTATTTGTTTTATAGATCTTAGGAACAATAGTTGCACCACGAGACCCTGACGTATGGCATGGTTTAAATAAGCGCAAATGGATTTACTTCCACGGGGTGAATCACCTTTCTGTAGAAGGTGGAGGGAGAATAGATGGAATGGGACAGGAATGGTGGTCCAGATCTTGCAAGATCAACTCCACTAATGTATTGCTATCTCAGAAACTTATTTTCATATGTAGTTGAAGTTTATTCATCAGTTTAACCAAGTGATGATGACTTCAAAATCTCCTTTTGCAGCCATGTCTTCCTGCTCCAACGGTTAGTGGCGCTTCAAAATATGGAGCAAAACAGTTCATTTCTCTAATCTGATGATACATTAATTATGAATCTATTAGCTGAAATATGAAACTTCATTTACTATGTAGGCCTTGACTTTTCATAAATGCAAGAGTCTGAAAGTCAGAAACCTTATGGTGCTAAATAGCCAAAAAATGCACATCGCGTTCACTAGCTGTATGCGGGTTGTTGCATCACGTCTCAAAGTATTAGCACCTGCCTCCAGCCCTAATACCGATGGAATCCACATTAGTGCTACAAAAGGTGTTGAGATTAAAGATAGTGTAATTAGAACAGGTGTGTTATCCTCAATCTAATGCAATGCTAGTGTTACTCATATTGGAAGATTTCAGTGATAGTTTAACATCTTATTTATTTTAAATAGTAATAACATGTTGGTGTTTTAACAGTCAATCATATTTCAGAAATCATAGAAACTTGTTTTTAGTAAAATATAGGATAAGCAGAAAGAAACTATCGTAACAATGAATAAACTTTGTAGGCATAAGGGCAGCCTAATGCACTAAAGCTCCCGCATATGCAATGTCTGGGAAGGGGTCCCACCATTTGGTGTATTGTATGCAGCCTTACCTTGTTTTTTACACAAGGGATTGTTTTGAAGACTTGAACGCGTGACCTTTCAGTCACGTGATAACAATTTTACTGTTGCGAAGACTCCCCCTACTTTGTAGGCATCTTATAAGTTTTTAAGTTTTATGATTATCATTATTATTTTTGAATGTATGGAACTAGTTGAATATGATATGCATGTCATTCCCTATATGATATTTTCAGTTGTGTAGCTTTTAAACTTTGGAAATGTTTAATGTTGTAAGGGAGATAGGGGGAAAGGCATGTGCAACCAACCTGAACAATAAACCAACAATAATGTAACATTGAAACACCATAAAAATGTGTAAATCATTTATAAGGTCAGAGAAATGTGTAACCTTGAAACACCATAGAAATGACTACTTTCATTACCGTTTTGTAGAAGTTCCAGAATAAACTTAATGATCAAGTAATGTGTCAGAAGACAAACATTTCACTGCATTATGTCCCATTTCAGGTGATGACTGCATCTCCATAGTCAGAAATTCTTCACGGGTCTGGATCCGAAATATTTCCTGTGGTCCAGGTCATGGCATAAGGTGAAAGTAATGTTCACTTTTAGTTCATTAGGATACCAAGTAGTATAAATTGTATAATTCTTAACCGATACTTGAACCTATTTTTCAGCATTGGTAGCTTAGGAAAATCAAACGTATGGGAGAAGATTCAAAATGTAATTGTTGATGGAGCACATCTATACAACACTGATAATGGGGTGAGAATCAAAACATGGCAGGTAACTTTCTTCGTAACTGTATCATTTTCATTCTCATTATATATTTCACCTAGTGATGACAAGTCTATTGAGTCGAGCCAAATTTTCAAGGGTGGGAGTGGTTTTGCCTCCAAGATCACATTCCAGAATATCTTAATGGAAAATGTGTCCAATCCAATAATAATAGATCAATACTACTGCGATTCACGACATCCATGCAAGAATCAGGTATTGAATTTTAAGATATTTTTGCTGGATTTTTTTGTATGTCTGCATGTTCATGTACTGACACTATTAATAGTCAGACAGTGATTTTTTTGAGAGGATAGCCTATATAGTTTTGAATGATTTGTAGAATGTAATAGCTGATTTCACAATTTCCATCGATTATAATCATGTCAGTGACACACATTCCTGTCAATCTCCAACAAGGATTCAAATTAATGAAGTTTCATAATAATATAATTCAACTGAAGATATTATGCTGTAAAAATTTATGCAGACTTCAGCTGTTCAAGTGGGAAACATATCCTTCATTAATATTCTAGGAACTTCAGCCACCGAAGAAACCATTAAATTTGCCTGCAGTGATGCTTCTCCATGTGAAGGACTATATCTGGAAAATATTTTTCTTCAATCATACTTTGGAGGAAATACAAGATCTTATTGTTGGCAAGCTCATGGCTCTGCTCAAGGTTATGTGTACCCTCCTGCCTGCTTTTCGACAAGTAGTGATTTAATTAGACAAAATGTCTTGTTAGAGCCAAATCCTGCTATTAATTCTGTCTGA
Protein sequence

>MS.gene89048.t1

MRSSSSISIYIIVIISIVLVPLFIHHAQAQAQPQGLDSIIKLPRSGSTRTRSKSKSRRVLSITHFGAIGDGFHNDTQAFLKVWEIACSLSGFINIVFPYEKTFLVSPIDIGGPCRSKITLRILGTIVAPRDPDVWHGLNKRKWIYFHGVNHLSVEGGGRIDGMGQEWWSRSCKINSTNPCLPAPTALTFHKCKSLKVRNLMVLNSQKMHIAFTSCMRVVASRLKVLAPASSPNTDGIHISATKGVEIKDSVIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGSLGKSNVWEKIQNVIVDGAHLYNTDNGVRIKTWQGGSGFASKITFQNILMENVSNPIIIDQYYCDSRHPCKNQTSAVQVGNISFINILGTSATEETIKFACSDASPCEGLYLENIFLQSYFGGNTRSYCWQAHGSAQGYVYPPACFSTSSDLIRQNVLLEPNPAINSV