AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86370.t1 MTR_2g103410 94.444 432 24 0 21 452 20 451 0.0 830
MS.gene86370.t1 MTR_2g103410 92.282 298 23 0 21 318 20 317 0.0 554
MS.gene86370.t1 MTR_7g113910 63.858 451 80 7 4 450 2 373 0.0 540
MS.gene86370.t1 MTR_1g052315 48.925 372 186 3 56 426 60 428 1.45e-121 362
MS.gene86370.t1 MTR_8g065030 45.501 389 210 2 52 440 57 443 2.90e-118 354
MS.gene86370.t1 MTR_7g091850 48.128 374 191 3 54 426 70 441 8.25e-114 342
MS.gene86370.t1 MTR_2g060350 46.543 376 194 6 54 426 68 439 1.21e-113 341
MS.gene86370.t1 MTR_7g091840 48.910 321 161 3 54 372 59 378 1.51e-103 313
MS.gene86370.t1 MTR_3g030540 45.845 373 197 4 55 426 65 433 4.08e-101 309
MS.gene86370.t1 MTR_1g086390 43.307 381 203 7 59 428 80 458 6.17e-99 305
MS.gene86370.t1 MTR_6g005630 42.051 390 212 8 42 427 24 403 4.86e-98 301
MS.gene86370.t1 MTR_4g094715 40.519 385 216 7 53 427 58 439 2.27e-94 292
MS.gene86370.t1 MTR_7g110050 41.270 378 212 6 59 427 66 442 4.75e-94 291
MS.gene86370.t1 MTR_2g103650 41.257 366 209 5 60 420 28 392 2.09e-92 285
MS.gene86370.t1 MTR_5g033680 38.619 391 227 7 59 439 58 445 1.15e-89 281
MS.gene86370.t1 MTR_2g049400 42.091 373 205 8 60 430 28 391 4.87e-88 274
MS.gene86370.t1 MTR_5g043350 38.564 376 220 5 60 431 29 397 2.10e-85 267
MS.gene86370.t1 MTR_2g032710 39.740 385 219 7 53 427 60 441 3.37e-85 269
MS.gene86370.t1 MTR_3g438050 37.306 386 230 6 50 430 17 395 5.79e-85 266
MS.gene86370.t1 MTR_6g028080 37.895 380 223 6 57 431 27 398 4.44e-84 264
MS.gene86370.t1 MTR_6g005630 39.744 390 198 10 42 427 24 380 1.80e-83 262
MS.gene86370.t1 MTR_3g084380 39.108 381 218 6 45 420 6 377 1.40e-82 260
MS.gene86370.t1 MTR_4g120320 37.907 430 238 14 14 429 7 421 5.01e-82 259
MS.gene86370.t1 MTR_3g054320 38.601 386 213 6 60 437 30 399 4.41e-81 256
MS.gene86370.t1 MTR_5g034090 37.028 397 217 8 60 427 121 513 5.41e-81 260
MS.gene86370.t1 MTR_4g083660 39.842 379 219 8 54 430 3 374 9.17e-81 254
MS.gene86370.t1 MTR_8g065010 36.567 402 221 8 56 427 103 500 4.70e-80 257
MS.gene86370.t1 MTR_4g084050 36.631 374 216 7 57 419 20 383 1.34e-79 252
MS.gene86370.t1 MTR_8g009810 39.005 382 224 7 51 430 26 400 5.68e-79 251
MS.gene86370.t1 MTR_0157s0060 37.867 375 217 4 65 435 3 365 1.02e-76 244
MS.gene86370.t1 MTR_4g034020 37.867 375 217 4 65 435 3 365 1.02e-76 244
MS.gene86370.t1 MTR_2g435640 37.995 379 223 7 57 429 50 422 2.31e-76 244
MS.gene86370.t1 MTR_8g010070 37.887 388 219 7 47 430 19 388 2.61e-76 243
MS.gene86370.t1 MTR_8g010080 37.867 375 214 7 59 431 30 387 1.18e-75 242
MS.gene86370.t1 MTR_8g010110 35.904 376 223 5 59 432 30 389 7.54e-75 239
MS.gene86370.t1 MTR_3g084360 35.602 382 234 5 53 430 17 390 2.53e-74 238
MS.gene86370.t1 MTR_8g010090 35.200 375 225 6 59 431 30 388 2.33e-73 236
MS.gene86370.t1 MTR_1g012390 37.037 378 222 10 56 427 24 391 9.05e-73 234
MS.gene86370.t1 MTR_8g008765 37.048 332 191 4 56 385 27 342 6.66e-71 228
MS.gene86370.t1 MTR_7g035415 42.662 293 153 6 59 347 39 320 1.10e-70 227
MS.gene86370.t1 MTR_8g010040 39.142 373 206 8 57 426 29 383 3.33e-70 228
MS.gene86370.t1 MTR_8g030930 35.526 380 230 9 58 429 25 397 6.25e-69 224
MS.gene86370.t1 MTR_2g058840 35.754 358 221 6 59 413 24 375 1.88e-68 224
MS.gene86370.t1 MTR_2g058670 34.959 369 211 7 59 413 24 377 5.55e-68 223
MS.gene86370.t1 MTR_1g013730 34.853 373 219 8 57 426 24 375 6.42e-66 216
MS.gene86370.t1 MTR_1g088160 34.031 382 235 9 59 431 34 407 2.69e-65 215
MS.gene86370.t1 MTR_1g013740 34.324 370 219 7 60 426 35 383 4.14e-65 214
MS.gene86370.t1 MTR_2g029170 37.353 340 200 10 95 430 31 361 5.11e-65 213
MS.gene86370.t1 MTR_8g077320 39.934 303 136 5 59 347 32 302 1.41e-64 212
MS.gene86370.t1 MTR_2g058640 34.840 376 232 7 59 429 24 391 1.49e-63 211
MS.gene86370.t1 MTR_5g097860 34.472 322 201 7 58 375 23 338 1.37e-59 199
MS.gene86370.t1 MTR_5g063430 36.213 301 177 6 58 354 23 312 2.04e-58 194
MS.gene86370.t1 MTR_8g010050 32.905 389 205 8 47 431 19 355 6.25e-58 194
MS.gene86370.t1 MTR_5g034090 36.364 286 153 5 60 318 121 404 1.73e-55 190
MS.gene86370.t1 MTR_8g008700 35.463 313 164 5 120 430 14 290 2.70e-55 186
MS.gene86370.t1 MTR_2g100040 30.601 366 191 10 39 399 9 316 7.49e-44 157
MS.gene86370.t1 MTR_8g031180 39.024 205 117 2 204 403 73 274 9.71e-42 150
MS.gene86370.t1 MTR_5g090160 27.366 391 234 12 60 415 44 419 3.50e-23 102
MS.gene86370.t1 MTR_4g124980 25.061 407 254 14 59 429 73 464 5.49e-22 98.6
MS.gene86370.t1 MTR_2g042740 24.408 422 267 14 59 441 55 463 1.44e-21 97.4
MS.gene86370.t1 MTR_3g449590 29.003 331 185 13 60 356 47 361 1.23e-19 91.3
MS.gene86370.t1 MTR_7g110710 26.895 409 238 15 60 429 43 429 1.59e-18 88.2
MS.gene86370.t1 MTR_7g110710 26.895 409 238 15 60 429 43 429 1.75e-18 87.8
MS.gene86370.t1 MTR_4g120730 29.371 286 178 9 158 429 153 428 2.03e-17 84.7
MS.gene86370.t1 MTR_7g078680 25.062 403 254 15 61 429 56 444 6.96e-17 83.2
MS.gene86370.t1 MTR_3g096330 24.211 475 282 18 19 444 41 486 1.53e-16 82.8
MS.gene86370.t1 MTR_1g100050 24.943 437 268 17 1 402 1 412 1.66e-16 82.0
MS.gene86370.t1 MTR_1g099850 26.944 360 208 17 1 327 6 343 3.85e-16 80.9
MS.gene86370.t1 MTR_7g088550 29.319 191 119 4 158 337 163 348 5.39e-16 80.5
MS.gene86370.t1 MTR_1g086030 26.149 348 209 11 60 373 82 415 9.83e-16 79.7
MS.gene86370.t1 MTR_1g100060 26.255 259 168 8 158 402 206 455 1.95e-14 75.9
MS.gene86370.t1 MTR_1g086030 27.757 263 161 7 137 384 69 317 2.15e-14 75.1
MS.gene86370.t1 MTR_8g098840 23.948 309 192 11 61 337 45 342 2.83e-14 75.1
MS.gene86370.t1 MTR_1g100040 27.119 236 151 7 158 381 169 395 3.57e-13 71.6
MS.gene86370.t1 MTR_7g092470 24.277 346 211 12 60 375 48 372 4.80e-13 71.2
MS.gene86370.t1 MTR_8g028725 25.991 227 148 6 158 371 168 387 1.17e-12 70.1
MS.gene86370.t1 MTR_8g007320 37.647 85 52 1 346 430 11 94 5.91e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86370.t1 AT1G80170 57.767 412 171 2 31 441 26 435 0.0 516
MS.gene86370.t1 AT1G80170 57.639 288 120 1 31 318 26 311 1.36e-123 362
MS.gene86370.t1 AT3G07970 50.720 347 167 3 56 401 67 410 1.62e-119 356
MS.gene86370.t1 AT2G41850 49.219 384 184 6 51 432 59 433 2.65e-119 355
MS.gene86370.t1 AT1G70500 44.156 385 212 3 52 435 59 441 6.32e-119 356
MS.gene86370.t1 AT1G23460 44.935 385 209 3 52 435 35 417 1.40e-115 346
MS.gene86370.t1 AT1G23460 44.935 385 209 3 52 435 59 441 1.89e-115 347
MS.gene86370.t1 AT3G57510 42.141 439 227 8 2 426 3 428 8.13e-115 344
MS.gene86370.t1 AT1G56710 44.125 383 201 6 59 430 47 427 4.48e-105 319
MS.gene86370.t1 AT5G14650 40.409 391 222 9 46 432 37 420 4.28e-96 296
MS.gene86370.t1 AT3G15720 40.759 395 217 6 56 444 19 402 8.07e-96 296
MS.gene86370.t1 AT3G15720 40.759 395 217 6 56 444 20 403 9.26e-96 296
MS.gene86370.t1 AT1G02460 42.559 383 204 8 59 427 88 468 3.14e-94 293
MS.gene86370.t1 AT1G05660 38.992 377 222 6 56 431 24 393 9.29e-94 289
MS.gene86370.t1 AT3G15720 40.253 395 216 7 56 444 19 399 3.80e-93 289
MS.gene86370.t1 AT1G05650 38.786 379 224 6 54 431 22 393 5.24e-92 284
MS.gene86370.t1 AT2G43890 39.247 372 215 8 61 430 30 392 1.86e-91 283
MS.gene86370.t1 AT4G01890 39.498 438 237 14 11 426 12 443 2.62e-90 282
MS.gene86370.t1 AT1G48100 36.935 398 237 8 53 439 73 467 1.55e-89 280
MS.gene86370.t1 AT3G26610 36.916 428 256 7 9 426 17 440 3.68e-88 277
MS.gene86370.t1 AT2G43870 41.867 375 208 8 54 426 15 381 1.77e-87 272
MS.gene86370.t1 AT2G43880 40.054 372 214 7 60 430 31 394 2.39e-87 272
MS.gene86370.t1 AT3G59850 40.267 375 215 7 58 430 21 388 1.81e-85 267
MS.gene86370.t1 AT3G59850 40.267 375 215 7 58 430 65 432 3.40e-85 268
MS.gene86370.t1 AT4G35670 38.564 376 221 4 61 434 25 392 1.52e-84 265
MS.gene86370.t1 AT1G10640 39.599 399 208 9 58 427 117 511 4.29e-84 268
MS.gene86370.t1 AT5G17200 39.798 397 203 7 47 419 26 410 2.37e-83 263
MS.gene86370.t1 AT5G44840 36.340 377 231 4 58 432 22 391 3.23e-83 261
MS.gene86370.t1 AT5G27530 37.731 379 218 3 58 434 51 413 4.02e-83 263
MS.gene86370.t1 AT1G65570 38.095 378 224 8 56 430 27 397 5.92e-83 261
MS.gene86370.t1 AT1G60590 36.520 408 217 10 55 427 118 518 4.44e-81 260
MS.gene86370.t1 AT3G15720 39.828 349 193 6 102 444 2 339 1.25e-79 252
MS.gene86370.t1 AT2G43860 39.410 373 217 7 60 430 33 398 2.98e-79 251
MS.gene86370.t1 AT1G78400 37.037 378 226 8 57 429 32 402 1.23e-76 245
MS.gene86370.t1 AT1G17150 36.598 388 233 9 50 431 22 402 1.00e-74 240
MS.gene86370.t1 AT1G02790 34.588 425 245 7 16 429 18 420 1.28e-74 240
MS.gene86370.t1 AT4G18180 36.856 388 224 8 59 429 38 421 1.44e-72 235
MS.gene86370.t1 AT5G44830 35.799 338 199 3 95 431 11 331 1.82e-71 229
MS.gene86370.t1 AT3G07830 36.034 358 218 7 76 429 37 387 5.24e-71 230
MS.gene86370.t1 AT1G80140 37.681 345 200 9 91 430 2 336 1.68e-69 224
MS.gene86370.t1 AT2G15450 34.103 390 240 10 52 431 22 404 2.14e-69 226
MS.gene86370.t1 AT5G48140 35.000 360 222 6 76 431 37 388 1.98e-68 223
MS.gene86370.t1 AT2G15460 34.545 385 235 10 52 426 22 399 2.96e-68 223
MS.gene86370.t1 AT3G07820 35.475 358 220 7 76 429 36 386 4.67e-68 222
MS.gene86370.t1 AT2G43880 40.134 299 171 6 60 357 31 322 1.93e-67 219
MS.gene86370.t1 AT3G07840 35.340 382 229 8 59 429 13 387 2.42e-67 221
MS.gene86370.t1 AT2G33160 35.567 388 235 8 50 429 22 402 7.97e-67 226
MS.gene86370.t1 AT1G43080 33.770 382 237 9 58 430 29 403 8.98e-67 219
MS.gene86370.t1 AT2G15470 33.846 390 241 10 52 431 22 404 2.04e-66 218
MS.gene86370.t1 AT4G32380 35.589 399 240 10 57 448 23 411 2.59e-66 219
MS.gene86370.t1 AT2G26620 32.808 381 242 9 58 431 29 402 4.72e-65 214
MS.gene86370.t1 AT1G43090 33.957 374 231 9 58 422 29 395 9.13e-65 215
MS.gene86370.t1 AT4G35670 38.542 288 169 2 143 430 2 281 1.23e-63 207
MS.gene86370.t1 AT4G13760 31.510 384 245 8 58 431 29 404 2.01e-63 211
MS.gene86370.t1 AT1G43100 33.690 374 232 9 58 422 29 395 7.16e-63 210
MS.gene86370.t1 AT2G40310 31.152 382 249 7 58 431 29 404 4.92e-62 207
MS.gene86370.t1 AT3G14040 34.759 374 233 7 60 429 71 437 5.37e-60 202
MS.gene86370.t1 AT3G07850 33.770 382 242 7 52 429 62 436 1.28e-58 199
MS.gene86370.t1 AT5G39910 36.964 303 165 6 59 356 35 316 2.33e-57 194
MS.gene86370.t1 AT5G14650 36.861 274 167 5 46 318 37 305 5.45e-57 191
MS.gene86370.t1 AT4G32375 38.148 270 159 3 135 403 5 267 5.71e-56 191
MS.gene86370.t1 AT4G32370 36.364 319 184 8 55 363 29 338 3.06e-54 184
MS.gene86370.t1 AT4G32380 36.184 304 180 9 57 356 23 316 3.60e-49 173
MS.gene86370.t1 AT3G62110 28.653 349 200 11 60 373 43 377 5.34e-24 104
MS.gene86370.t1 AT3G62110 28.653 349 200 11 60 373 43 377 5.34e-24 104
MS.gene86370.t1 AT5G41870 27.957 465 261 18 3 429 4 432 1.19e-23 103
MS.gene86370.t1 AT4G33440 25.659 417 242 16 56 429 68 459 9.00e-21 95.1
MS.gene86370.t1 AT4G23820 26.963 382 218 12 60 401 41 401 2.19e-20 93.6
MS.gene86370.t1 AT3G42950 24.471 425 261 14 59 440 65 472 2.99e-20 93.6
MS.gene86370.t1 AT1G19170 23.171 410 259 14 59 429 86 478 7.44e-19 89.4
MS.gene86370.t1 AT5G49215 26.559 433 245 16 49 434 30 436 4.52e-17 83.6
MS.gene86370.t1 AT3G48950 25.000 380 222 15 62 399 47 405 5.10e-17 83.6
MS.gene86370.t1 AT5G49215 26.559 433 245 16 49 434 32 438 5.99e-17 83.2
MS.gene86370.t1 AT3G06770 25.793 473 260 15 5 429 2 431 3.70e-15 77.8
MS.gene86370.t1 AT3G06770 25.738 474 261 15 4 429 2 432 4.48e-15 77.4
MS.gene86370.t1 AT2G23900 23.580 352 221 14 62 378 58 396 2.48e-14 75.5
MS.gene86370.t1 AT4G23500 27.895 190 117 5 158 334 181 363 3.53e-14 75.1
MS.gene86370.t1 AT3G61490 30.055 183 108 6 158 327 271 446 1.97e-13 72.8
MS.gene86370.t1 AT3G61490 29.255 188 113 6 158 332 173 353 2.23e-13 72.4
MS.gene86370.t1 AT3G61490 29.255 188 113 6 158 332 158 338 2.43e-13 72.4
MS.gene86370.t1 AT3G61490 29.255 188 113 6 158 332 158 338 2.43e-13 72.4
MS.gene86370.t1 AT3G61490 29.255 188 113 6 158 332 158 338 2.43e-13 72.4
MS.gene86370.t1 AT3G57790 24.917 301 182 12 60 332 35 319 1.68e-12 69.7
MS.gene86370.t1 AT3G57790 24.917 301 182 12 60 332 35 319 1.68e-12 69.7
MS.gene86370.t1 AT3G06770 26.481 287 185 7 158 429 69 344 1.08e-11 66.6
MS.gene86370.t1 AT3G06770 25.672 335 207 9 126 429 39 362 1.45e-11 66.2
MS.gene86370.t1 AT3G06770 25.672 335 207 9 126 429 39 362 1.45e-11 66.2
MS.gene86370.t1 AT3G16850 25.155 322 192 11 60 346 40 347 3.59e-11 65.5

Find 121 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGGATTCCATCAGTATT+AGG 0.197943 2.3:+1549963 None:intergenic
GTTCTTTCCATCACTCATTT+TGG 0.214496 2.3:-1551179 MS.gene86370:CDS
TATCTTTACAACACTGATAA+TGG 0.215916 2.3:-1548923 MS.gene86370:CDS
ATCACTGCAGGCAAATTTAA+TGG 0.242128 2.3:+1548314 None:intergenic
TTCAGGCCTTCTTGAAGGTT+TGG 0.258824 2.3:-1550749 MS.gene86370:intron
TAGTATTGATCTATTATTAT+TGG 0.266163 2.3:+1548725 None:intergenic
ATCTTTACAACACTGATAAT+GGG 0.275213 2.3:-1548922 MS.gene86370:CDS
CACATTCCAGAATATCTTAA+TGG 0.285684 2.3:-1548762 MS.gene86370:CDS
ATTATCAAACTCCCACGTTC+TGG 0.285907 2.3:-1551239 MS.gene86370:CDS
GAAGGTGGAGGGAGAATAGA+TGG 0.297947 2.3:-1550394 MS.gene86370:CDS
AACCCGCCTGGATTTGGATT+TGG 0.305803 2.3:+1551199 None:intergenic
GGAAAGAACCCGCCTGGATT+TGG 0.307981 2.3:+1551193 None:intergenic
TCAGGCCTTCTTGAAGGTTT+GGG 0.313872 2.3:-1550748 MS.gene86370:intron
TCCATGCGAAGGACTATATC+TGG 0.328133 2.3:-1548286 MS.gene86370:CDS
ATTCAAAATGTAATTGTTGA+TGG 0.333748 2.3:-1548950 MS.gene86370:CDS
CCTGGATTTGGATTTGGATC+TGG 0.334814 2.3:+1551205 None:intergenic
TTTGGATTTGGATCTGGTTC+GGG 0.344983 2.3:+1551211 None:intergenic
TCAGAAATTCTTCACGGGTC+TGG 0.349912 2.3:-1549136 MS.gene86370:CDS
ACAGAATTAATAGCAGGATT+TGG 0.350920 2.3:+1548120 None:intergenic
GAAATTGCTTGTTCTCTCTC+TGG 0.353244 2.3:-1550726 MS.gene86370:CDS
ATTTGGATTTGGATCTGGTT+CGG 0.353273 2.3:+1551210 None:intergenic
GCAAGCTCATGGTTCTGCTC+AGG 0.364948 2.3:-1548211 MS.gene86370:CDS
GGCAAATTTAATGGTTTCTT+CGG 0.366996 2.3:+1548323 None:intergenic
GATATTCTGGAATGTGATCT+TGG 0.388014 2.3:+1548769 None:intergenic
AACAATGATATATATAGAAA+TGG 0.400596 2.3:+1551337 None:intergenic
TTGATCTATTATTATTGGAT+TGG 0.401401 2.3:+1548730 None:intergenic
CGAAATATTTCCTGCGGTCC+AGG 0.405337 2.3:-1549110 MS.gene86370:CDS
CTGAGATAGCAATACATTAG+TGG 0.412225 2.3:+1550330 None:intergenic
GTGAATCACCTTTCTGTAGA+AGG 0.414133 2.3:-1550412 MS.gene86370:CDS
CACGGTCCACCAATGTCAAT+TGG 0.416662 2.3:+1550657 None:intergenic
TTTAAACCATGCCATATGTC+AGG 0.419031 2.3:+1550463 None:intergenic
CTGGACCGCAGGAAATATTT+CGG 0.419458 2.3:+1549111 None:intergenic
GAAATACAAGATCTTATTGT+TGG 0.420722 2.3:-1548233 MS.gene86370:CDS
ACGACATCCATGCAAGAATC+AGG 0.421050 2.3:-1548693 MS.gene86370:intron
TGTGGATTCCATCAGTATTA+GGG 0.421148 2.3:+1549964 None:intergenic
TTATCAAACTCCCACGTTCT+GGG 0.428059 2.3:-1551238 MS.gene86370:CDS
AAAGATAGTGTAATTAGAAC+AGG 0.430176 2.3:-1549915 MS.gene86370:intron
ATATCCTTCATTAATATTCA+AGG 0.433661 2.3:-1548357 MS.gene86370:CDS
ATCACTACTTGTTGAAAAGC+AGG 0.454010 2.3:+1548170 None:intergenic
GCAAATGGATTTACTTCCAC+GGG 0.466116 2.3:-1550435 MS.gene86370:CDS
ATGGTTTAAATAAGCGCAAA+TGG 0.466463 2.3:-1550450 MS.gene86370:CDS
CAAGCTCATGGTTCTGCTCA+GGG 0.473039 2.3:-1548210 MS.gene86370:CDS
GGTGTTGATCTTGCAAGATC+TGG 0.475427 2.3:+1550351 None:intergenic
GCGGTCCAGGTCATGGCATA+AGG 0.477965 2.3:-1549097 MS.gene86370:intron
CACCACGAGACCCTGACATA+TGG 0.479091 2.3:-1550474 MS.gene86370:CDS
TTTCTTCGATCATACTTTGG+AGG 0.486465 2.3:-1548255 MS.gene86370:CDS
GCTTAGGAAAATCAAACGTA+TGG 0.487471 2.3:-1548979 MS.gene86370:CDS
GTCGATCTAAGATCACTTTG+AGG 0.490157 2.3:-1550635 MS.gene86370:CDS
GTTCAGACAGAATTAATAGC+AGG 0.495347 2.3:+1548114 None:intergenic
GTCAGTCCAATTGACATTGG+TGG 0.498328 2.3:-1550663 MS.gene86370:CDS
TGGAGGGAGAATAGATGGAA+TGG 0.499731 2.3:-1550389 MS.gene86370:CDS
CATTAATATTCAAGGAACTT+CGG 0.505412 2.3:-1548349 MS.gene86370:CDS
GGAGGGAGAATAGATGGAAT+GGG 0.507401 2.3:-1550388 MS.gene86370:CDS
CGCATTCACTAGCTGTATGC+GGG 0.515066 2.3:-1550027 MS.gene86370:CDS
ATTTCCTGCGGTCCAGGTCA+TGG 0.517475 2.3:-1549104 MS.gene86370:CDS
CTTGTCAGTCCAATTGACAT+TGG 0.518229 2.3:-1550666 MS.gene86370:CDS
AGTTCCTTGAATATTAATGA+AGG 0.518756 2.3:+1548353 None:intergenic
GAGAATAGATGGAATGGGAC+AGG 0.519778 2.3:-1550383 MS.gene86370:CDS
CCATTGTCAGAAATTCTTCA+CGG 0.520353 2.3:-1549142 MS.gene86370:CDS
CACCTTTCTGTAGAAGGTGG+AGG 0.520732 2.3:-1550406 MS.gene86370:CDS
CATTGTCAGAAATTCTTCAC+GGG 0.523478 2.3:-1549141 MS.gene86370:CDS
GTTGTGCTTGTGCTTGTGCA+TGG 0.529138 2.3:+1551279 None:intergenic
TTCAATACCTGATTCTTGCA+TGG 0.529530 2.3:+1548686 None:intergenic
AAATTTAATGGTTTCTTCGG+TGG 0.531158 2.3:+1548326 None:intergenic
TCTTATTGTTGGCAAGCTCA+TGG 0.536577 2.3:-1548222 MS.gene86370:CDS
ATTATGAAAACCATCACCTA+TGG 0.537109 2.3:+1551154 None:intergenic
TCAGTATTAGGGCTGGAAGC+AGG 0.538760 2.3:+1549975 None:intergenic
GCGCCACTAACCGTTGGAGC+AGG 0.541200 2.3:+1550220 None:intergenic
AGTGATGGAAAGAACCCGCC+TGG 0.541770 2.3:+1551187 None:intergenic
TCGATCTAAGATCACTTTGA+GGG 0.543860 2.3:-1550634 MS.gene86370:intron
CCAGATCCAAATCCAAATCC+AGG 0.547681 2.3:-1551205 MS.gene86370:CDS
CGCAAATGGATTTACTTCCA+CGG 0.548823 2.3:-1550436 MS.gene86370:CDS
ATCCACATTAGTGCTACAAA+AGG 0.548972 2.3:-1549948 MS.gene86370:CDS
GATTCCATCAGTATTAGGGC+TGG 0.550615 2.3:+1549968 None:intergenic
CTTGCATTTATGAAAAGTCA+AGG 0.554504 2.3:+1550100 None:intergenic
GCTTCCAGCCCTAATACTGA+TGG 0.563965 2.3:-1549972 MS.gene86370:CDS
GCCATGTCTTCCTGCTCCAA+CGG 0.565057 2.3:-1550230 MS.gene86370:intron
AATTTCCCAAACCTTCAAGA+AGG 0.566327 2.3:+1550743 None:intergenic
TCCCTCCACCTTCTACAGAA+AGG 0.574731 2.3:+1550404 None:intergenic
TCCAGATATAGTCCTTCGCA+TGG 0.577421 2.3:+1548285 None:intergenic
GTTCGGGTTGACCCAGAACG+TGG 0.577885 2.3:+1551227 None:intergenic
TATGCCATGACCTGGACCGC+AGG 0.579266 2.3:+1549100 None:intergenic
CTTAGGAAAATCAAACGTAT+GGG 0.579944 2.3:-1548978 MS.gene86370:CDS
GCATGGAGAAGCATCACTGC+AGG 0.584741 2.3:+1548302 None:intergenic
TTAAACCATGCCATATGTCA+GGG 0.584939 2.3:+1550464 None:intergenic
TTTCACCTTATGCCATGACC+TGG 0.585279 2.3:+1549092 None:intergenic
ACCTTTCTGTAGAAGGTGGA+GGG 0.590327 2.3:-1550405 MS.gene86370:CDS
CAGACTTCAGCTGTTCAAGT+GGG 0.594864 2.3:-1548384 MS.gene86370:CDS
TATGGCACCAAAATGAGTGA+TGG 0.595270 2.3:+1551172 None:intergenic
ACCGTTGGAGCAGGAAGACA+TGG 0.595442 2.3:+1550229 None:intergenic
TGCCATATGTCAGGGTCTCG+TGG 0.597428 2.3:+1550472 None:intergenic
ATCCAAATCCAAATCCAGGC+GGG 0.599305 2.3:-1551201 MS.gene86370:CDS
GGTGAGAATCAAAACATGGC+AGG 0.600627 2.3:-1548900 MS.gene86370:intron
GCAGACTTCAGCTGTTCAAG+TGG 0.600789 2.3:-1548385 MS.gene86370:intron
CTACTTGTTGAAAAGCAGGC+AGG 0.606629 2.3:+1548174 None:intergenic
ATAATAGAGTCAAGTCCTTG+TGG 0.608306 2.3:+1551257 None:intergenic
TCTTTACAACACTGATAATG+GGG 0.611264 2.3:-1548921 MS.gene86370:CDS
CTTGTTGAAAAGCAGGCAGG+AGG 0.616288 2.3:+1548177 None:intergenic
CCGTGAAGAATTTCTGACAA+TGG 0.622012 2.3:+1549142 None:intergenic
AGTGATGCTTCTCCATGCGA+AGG 0.626792 2.3:-1548297 MS.gene86370:CDS
CGAGACCCTGACATATGGCA+TGG 0.627441 2.3:-1550469 MS.gene86370:CDS
AATCACCTTTCTGTAGAAGG+TGG 0.627809 2.3:-1550409 MS.gene86370:CDS
TAGATGGAATGGGACAGGAA+TGG 0.629282 2.3:-1550378 MS.gene86370:CDS
ATGGAATGGGACAGGAATGG+TGG 0.629500 2.3:-1550375 MS.gene86370:CDS
TCGCATTCACTAGCTGTATG+CGG 0.629981 2.3:-1550028 MS.gene86370:CDS
TGTGCATGGTGGATGAGTAA+AGG 0.640085 2.3:+1551293 None:intergenic
ATTCTGGAATGTGATCTTGG+AGG 0.640527 2.3:+1548772 None:intergenic
GTGCTTGTGCTTGTGCATGG+TGG 0.641670 2.3:+1551282 None:intergenic
GAGTAAAGGAACAAGTACAA+TGG 0.643499 2.3:+1551307 None:intergenic
TTTGGCTATTTAGCACCACA+AGG 0.650329 2.3:+1550060 None:intergenic
TCTGAAAGTCAGAAACCTTG+TGG 0.650336 2.3:-1550075 MS.gene86370:CDS
TTGTTGAAAAGCAGGCAGGA+GGG 0.660825 2.3:+1548178 None:intergenic
CAAGCACAAGCACAACCACA+AGG 0.663127 2.3:-1551272 MS.gene86370:CDS
ATGGGGTGAGAATCAAAACA+TGG 0.670172 2.3:-1548904 MS.gene86370:CDS
TGGATCCGAAATATTTCCTG+CGG 0.672303 2.3:-1549116 MS.gene86370:CDS
AGACTTCAGCTGTTCAAGTG+GGG 0.681157 2.3:-1548383 MS.gene86370:CDS
CAGAAAGGTGATTCACCCCG+TGG 0.688997 2.3:+1550419 None:intergenic
TTCGGGTTGACCCAGAACGT+GGG 0.689501 2.3:+1551228 None:intergenic
GATCCAAATCCAAATCCAGG+CGG 0.712455 2.3:-1551202 MS.gene86370:CDS
CAAATGGATTTACTTCCACG+GGG 0.737068 2.3:-1550434 MS.gene86370:CDS
AAAGTGATCTTAGATCGACA+CGG 0.771784 2.3:+1550639 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTATTCAAAATATAT+AGG + chr2.3:1550903-1550922 None:intergenic 10.0%
!! AACAATGATATATATAGAAA+TGG + chr2.3:1548135-1548154 None:intergenic 15.0%
!! ATTATACAATTTATACTACT+TGG + chr2.3:1550432-1550451 None:intergenic 15.0%
!!! AAATGATTTACACATTTTTA+TGG + chr2.3:1550154-1550173 None:intergenic 15.0%
!!! AATTTTAAGATATTTTTGCA+GGG - chr2.3:1550804-1550823 MS.gene86370:intron 15.0%
!!! CATTATTATTTTTGAATGTA+TGG - chr2.3:1549971-1549990 MS.gene86370:CDS 15.0%
!!! TAGTATTGATCTATTATTAT+TGG + chr2.3:1550747-1550766 None:intergenic 15.0%
!!! TTATTTGTTTTATAGATCAT+AGG - chr2.3:1548961-1548980 MS.gene86370:CDS 15.0%
!!! TTTTTTTTATCTATCTTTTC+AGG - chr2.3:1548703-1548722 MS.gene86370:CDS 15.0%
!! ATATCCTTCATTAATATTCA+AGG - chr2.3:1551112-1551131 MS.gene86370:intron 20.0%
!! ATTCAAAATGTAATTGTTGA+TGG - chr2.3:1550519-1550538 MS.gene86370:intron 20.0%
!! TAATGAGAATGAAAATGATA+CGG + chr2.3:1550610-1550629 None:intergenic 20.0%
!! TTGATCTATTATTATTGGAT+TGG + chr2.3:1550742-1550761 None:intergenic 20.0%
!! TTTCAATGTTACATTATTGT+TGG + chr2.3:1550129-1550148 None:intergenic 20.0%
!!! ACAAGAAATGTTTTTTCATA+TGG + chr2.3:1548788-1548807 None:intergenic 20.0%
!!! ACCTGTTTTTAGTAAAATAT+AGG - chr2.3:1549681-1549700 MS.gene86370:intron 20.0%
!!! GAATTTTAAGATATTTTTGC+AGG - chr2.3:1550803-1550822 MS.gene86370:intron 20.0%
!!! TCCTATATTTTACTAAAAAC+AGG + chr2.3:1549685-1549704 None:intergenic 20.0%
! AAAGATAGTGTAATTAGAAC+AGG - chr2.3:1549554-1549573 MS.gene86370:intron 25.0%
! AATAAACTTTGTAGGCATAA+TGG - chr2.3:1549733-1549752 MS.gene86370:intron 25.0%
! AGTTCCTTGAATATTAATGA+AGG + chr2.3:1551119-1551138 None:intergenic 25.0%
! ATATTCATTCATATTCCACA+AGG - chr2.3:1548504-1548523 MS.gene86370:intron 25.0%
! ATCTTTACAACACTGATAAT+GGG - chr2.3:1550547-1550566 MS.gene86370:intron 25.0%
! CATTAATATTCAAGGAACTT+CGG - chr2.3:1551120-1551139 MS.gene86370:intron 25.0%
! GAAATACAAGATCTTATTGT+TGG - chr2.3:1551236-1551255 MS.gene86370:CDS 25.0%
! GGAAATGTTTAATGTTGTAA+GGG - chr2.3:1550062-1550081 MS.gene86370:CDS 25.0%
! TAACAACGAATAAACTTTGT+AGG - chr2.3:1549725-1549744 MS.gene86370:intron 25.0%
! TATCTTTACAACACTGATAA+TGG - chr2.3:1550546-1550565 MS.gene86370:intron 25.0%
! TGAAAAATAGGTTCAAGTAT+CGG + chr2.3:1550461-1550480 None:intergenic 25.0%
! TGGAAATGTTTAATGTTGTA+AGG - chr2.3:1550061-1550080 MS.gene86370:CDS 25.0%
!! ACAGAATTTCGTTTAAAATC+CGG + chr2.3:1548887-1548906 None:intergenic 25.0%
!! ATTTTTCTTCGATCATACTT+TGG - chr2.3:1551211-1551230 MS.gene86370:CDS 25.0%
!! CATTTTCCATTAAGATATTC+TGG + chr2.3:1550716-1550735 None:intergenic 25.0%
!! TCATTAATTTGAATCCTTGT+TGG + chr2.3:1550997-1551016 None:intergenic 25.0%
!!! AACGAAAGTAGTCATTTTTA+TGG + chr2.3:1550210-1550229 None:intergenic 25.0%
!!! ATGTTCACTTTTAGTTCATT+AGG - chr2.3:1550403-1550422 MS.gene86370:CDS 25.0%
!!! ATTCTAGAACTTCTACAAAA+CGG + chr2.3:1550234-1550253 None:intergenic 25.0%
!!! TAGTCAGTTATTTTTTTGAG+AGG - chr2.3:1550873-1550892 MS.gene86370:intron 25.0%
!!! TGAAACTACTTTTACTATGT+AGG - chr2.3:1549346-1549365 MS.gene86370:intron 25.0%
!!! TTACCTTGTTTTTTACACAA+GGG - chr2.3:1549832-1549851 MS.gene86370:intron 25.0%
!!! TTATTGTTGGTTTATTGTTC+AGG + chr2.3:1550116-1550135 None:intergenic 25.0%
AAATTTAATGGTTTCTTCGG+TGG + chr2.3:1551146-1551165 None:intergenic 30.0%
AATACTAGCGTTACTCATAT+TGG - chr2.3:1549599-1549618 MS.gene86370:intron 30.0%
AATCCCTTGTGTAAAAAACA+AGG + chr2.3:1549838-1549857 None:intergenic 30.0%
ACAGAATTAATAGCAGGATT+TGG + chr2.3:1551352-1551371 None:intergenic 30.0%
ACCATGATATACTGATAAAC+AGG - chr2.3:1548673-1548692 MS.gene86370:intron 30.0%
ACCTGTTTATCAGTATATCA+TGG + chr2.3:1548677-1548696 None:intergenic 30.0%
ACTGACATGATTATAATCGA+TGG + chr2.3:1550953-1550972 None:intergenic 30.0%
ATCAGATTAGAGAAATGAAC+TGG + chr2.3:1549293-1549312 None:intergenic 30.0%
ATGGTTTAAATAAGCGCAAA+TGG - chr2.3:1549019-1549038 MS.gene86370:intron 30.0%
ATTATGAAAACCATCACCTA+TGG + chr2.3:1548318-1548337 None:intergenic 30.0%
ATTTATAGCCACTGAATGTT+AGG - chr2.3:1548583-1548602 MS.gene86370:intron 30.0%
ATTTCACTGCATTACATTTC+AGG - chr2.3:1550290-1550309 MS.gene86370:intron 30.0%
CACATTCCAGAATATCTTAA+TGG - chr2.3:1550707-1550726 MS.gene86370:CDS 30.0%
CTTAGGAAAATCAAACGTAT+GGG - chr2.3:1550491-1550510 MS.gene86370:CDS 30.0%
CTTGCATTTATGAAAAGTCA+AGG + chr2.3:1549372-1549391 None:intergenic 30.0%
CTTGTGTAAAAAACAAGGTA+AGG + chr2.3:1549833-1549852 None:intergenic 30.0%
GCGACTGAAAATATCATATA+GGG + chr2.3:1550026-1550045 None:intergenic 30.0%
GGCAAATTTAATGGTTTCTT+CGG + chr2.3:1551149-1551168 None:intergenic 30.0%
TATAAGATGCCTACAAAGTA+GGG + chr2.3:1549929-1549948 None:intergenic 30.0%
TTATAAGATGCCTACAAAGT+AGG + chr2.3:1549930-1549949 None:intergenic 30.0%
! ATACTGTTTTCCCTTGAATT+TGG - chr2.3:1548359-1548378 MS.gene86370:CDS 30.0%
! TCTTTACAACACTGATAATG+GGG - chr2.3:1550548-1550567 MS.gene86370:intron 30.0%
!! TTGAACCTATTTTTCAGCAT+TGG - chr2.3:1550465-1550484 MS.gene86370:CDS 30.0%
!!! CTTACCTTGTTTTTTACACA+AGG - chr2.3:1549831-1549850 MS.gene86370:intron 30.0%
AAAGTGATCTTAGATCGACA+CGG + chr2.3:1548833-1548852 None:intergenic 35.0%
AATTTCCCAAACCTTCAAGA+AGG + chr2.3:1548729-1548748 None:intergenic 35.0%
ACAAATCACCTAACATTCAG+TGG + chr2.3:1548594-1548613 None:intergenic 35.0%
AGCTACCAATGCTGAAAAAT+AGG + chr2.3:1550473-1550492 None:intergenic 35.0%
ATAAGATGCCTACAAAGTAG+GGG + chr2.3:1549928-1549947 None:intergenic 35.0%
ATAATAGAGTCAAGTCCTTG+TGG + chr2.3:1548215-1548234 None:intergenic 35.0%
ATCACTGCAGGCAAATTTAA+TGG + chr2.3:1551158-1551177 None:intergenic 35.0%
ATCCACATTAGTGCTACAAA+AGG - chr2.3:1549521-1549540 MS.gene86370:intron 35.0%
ATGTGGATTCCATCAGTATT+AGG + chr2.3:1549509-1549528 None:intergenic 35.0%
ATTTGGATTTGGATCTGGTT+CGG + chr2.3:1548262-1548281 None:intergenic 35.0%
CATTGTCAGAAATTCTTCAC+GGG - chr2.3:1550328-1550347 MS.gene86370:intron 35.0%
CCATTGTCAGAAATTCTTCA+CGG - chr2.3:1550327-1550346 MS.gene86370:intron 35.0%
CGCGACTGAAAATATCATAT+AGG + chr2.3:1550027-1550046 None:intergenic 35.0%
CTACCACCCTAAAGAAAATT+TGG + chr2.3:1550669-1550688 None:intergenic 35.0%
CTGAGATAGCAATACATTAG+TGG + chr2.3:1549142-1549161 None:intergenic 35.0%
GAGTAAAGGAACAAGTACAA+TGG + chr2.3:1548165-1548184 None:intergenic 35.0%
GCTAGTATTGCATTAGATTG+AGG + chr2.3:1549588-1549607 None:intergenic 35.0%
GCTTAGGAAAATCAAACGTA+TGG - chr2.3:1550490-1550509 MS.gene86370:CDS 35.0%
GTTGTTATCACATGACTGAA+AGG + chr2.3:1549884-1549903 None:intergenic 35.0%
TCAATAGACTTGTCATCACT+AGG + chr2.3:1550640-1550659 None:intergenic 35.0%
TGCAGGACATTACATTCTTA+CGG + chr2.3:1551057-1551076 None:intergenic 35.0%
TGTCTCATTGAGCTAGATAT+AGG - chr2.3:1548611-1548630 MS.gene86370:intron 35.0%
TGTGGATTCCATCAGTATTA+GGG + chr2.3:1549508-1549527 None:intergenic 35.0%
TTAAACCATGCCATATGTCA+GGG + chr2.3:1549008-1549027 None:intergenic 35.0%
TTAATGTTGTAAGGGAGAGA+GGG - chr2.3:1550070-1550089 MS.gene86370:CDS 35.0%
TTAGTGGCGCTTCAAAATAT+GGG - chr2.3:1549262-1549281 MS.gene86370:intron 35.0%
TTCAATACCTGATTCTTGCA+TGG + chr2.3:1550786-1550805 None:intergenic 35.0%
TTTAAACCATGCCATATGTC+AGG + chr2.3:1549009-1549028 None:intergenic 35.0%
TTTAATGTTGTAAGGGAGAG+AGG - chr2.3:1550069-1550088 MS.gene86370:CDS 35.0%
TTTCCCTTGAATTTGGACTT+TGG - chr2.3:1548366-1548385 MS.gene86370:CDS 35.0%
TTTCTTCGATCATACTTTGG+AGG - chr2.3:1551214-1551233 MS.gene86370:CDS 35.0%
! AGTCGAGCCAAATTTTCTTT+AGG - chr2.3:1550659-1550678 MS.gene86370:CDS 35.0%
! ATCACTACTTGTTGAAAAGC+AGG + chr2.3:1551302-1551321 None:intergenic 35.0%
! GTCGAGCCAAATTTTCTTTA+GGG - chr2.3:1550660-1550679 MS.gene86370:CDS 35.0%
! GTTCTTTCCATCACTCATTT+TGG - chr2.3:1548290-1548309 MS.gene86370:CDS 35.0%
! TCGATCTAAGATCACTTTGA+GGG - chr2.3:1548835-1548854 MS.gene86370:intron 35.0%
! TGGTTTTCATAATGACACTC+AGG - chr2.3:1548325-1548344 MS.gene86370:CDS 35.0%
!! GATATTCTGGAATGTGATCT+TGG + chr2.3:1550703-1550722 None:intergenic 35.0%
!! TGTTGGTTTATTGTTCAGGT+TGG + chr2.3:1550112-1550131 None:intergenic 35.0%
!!! AATTTTCTTTAGGGTGGTAG+TGG - chr2.3:1550669-1550688 MS.gene86370:CDS 35.0%
!!! TGAATGCGATGTGCATTTTT+TGG + chr2.3:1549430-1549449 None:intergenic 35.0%
!!! TTTTTCAGCATTGGTAGCTT+AGG - chr2.3:1550474-1550493 MS.gene86370:CDS 35.0%
AACTTGCAAGAACATCCTTG+TGG + chr2.3:1548522-1548541 None:intergenic 40.0%
AATCACCTTTCTGTAGAAGG+TGG - chr2.3:1549060-1549079 MS.gene86370:intron 40.0%
AATCCTTGTTGGAGATTGAC+AGG + chr2.3:1550986-1551005 None:intergenic 40.0%
ACAAGGATGTTCTTGCAAGT+TGG - chr2.3:1548521-1548540 MS.gene86370:intron 40.0%
ATGGGGTGAGAATCAAAACA+TGG - chr2.3:1550565-1550584 MS.gene86370:intron 40.0%
ATTATCAAACTCCCACGTTC+TGG - chr2.3:1548230-1548249 MS.gene86370:CDS 40.0%
ATTCCTGTCAATCTCCAACA+AGG - chr2.3:1550980-1550999 MS.gene86370:intron 40.0%
CAAGGATGTTCTTGCAAGTT+GGG - chr2.3:1548522-1548541 MS.gene86370:intron 40.0%
CATACAATACACCAAATGGC+GGG + chr2.3:1549807-1549826 None:intergenic 40.0%
CCGTGAAGAATTTCTGACAA+TGG + chr2.3:1550330-1550349 None:intergenic 40.0%
CCTCCAAAGTCCAAATTCAA+GGG + chr2.3:1548372-1548391 None:intergenic 40.0%
CTTGTCAGTCCAATTGACAT+TGG - chr2.3:1548803-1548822 MS.gene86370:intron 40.0%
GAAATTGCTTGTTCTCTCTC+TGG - chr2.3:1548743-1548762 MS.gene86370:CDS 40.0%
GCATACAATACACCAAATGG+CGG + chr2.3:1549808-1549827 None:intergenic 40.0%
GCTGCATACAATACACCAAA+TGG + chr2.3:1549811-1549830 None:intergenic 40.0%
GTGAATCACCTTTCTGTAGA+AGG - chr2.3:1549057-1549076 MS.gene86370:intron 40.0%
GTTAGTGGCGCTTCAAAATA+TGG - chr2.3:1549261-1549280 MS.gene86370:intron 40.0%
TAAGATGCCTACAAAGTAGG+GGG + chr2.3:1549927-1549946 None:intergenic 40.0%
TAGTGGCGCTTCAAAATATG+GGG - chr2.3:1549263-1549282 MS.gene86370:intron 40.0%
TATGGCACCAAAATGAGTGA+TGG + chr2.3:1548300-1548319 None:intergenic 40.0%
TCTGAAAGTCAGAAACCTTG+TGG - chr2.3:1549394-1549413 MS.gene86370:intron 40.0%
TCTTATTGTTGGCAAGCTCA+TGG - chr2.3:1551247-1551266 MS.gene86370:CDS 40.0%
TGGATCCGAAATATTTCCTG+CGG - chr2.3:1550353-1550372 MS.gene86370:CDS 40.0%
TTATCAAACTCCCACGTTCT+GGG - chr2.3:1548231-1548250 MS.gene86370:CDS 40.0%
TTTGGCTATTTAGCACCACA+AGG + chr2.3:1549412-1549431 None:intergenic 40.0%
! CAAATGGATTTACTTCCACG+GGG - chr2.3:1549035-1549054 MS.gene86370:intron 40.0%
! CAAGAGTGTGTGAAATCTAC+CGG - chr2.3:1548865-1548884 MS.gene86370:intron 40.0%
! CACCTTTTGTAGCACTAATG+TGG + chr2.3:1549526-1549545 None:intergenic 40.0%
! CGCAAATGGATTTACTTCCA+CGG - chr2.3:1549033-1549052 MS.gene86370:intron 40.0%
! GCAAATGGATTTACTTCCAC+GGG - chr2.3:1549034-1549053 MS.gene86370:intron 40.0%
! GTCGATCTAAGATCACTTTG+AGG - chr2.3:1548834-1548853 MS.gene86370:intron 40.0%
! TTTGGATTTGGATCTGGTTC+GGG + chr2.3:1548261-1548280 None:intergenic 40.0%
!! ATCTTTTCAGGCCTTCTTGA+AGG - chr2.3:1548715-1548734 MS.gene86370:CDS 40.0%
!! ATTCTGGAATGTGATCTTGG+AGG + chr2.3:1550700-1550719 None:intergenic 40.0%
!! GAGCCAAATTTTCTTTAGGG+TGG - chr2.3:1550663-1550682 MS.gene86370:CDS 40.0%
!!! ATCACTCATTTTGGTGCCAT+AGG - chr2.3:1548299-1548318 MS.gene86370:CDS 40.0%
ACAACTTTACCGTTGCACCA+AGG - chr2.3:1549899-1549918 MS.gene86370:intron 45.0%
ACCTTTCTGTAGAAGGTGGA+GGG - chr2.3:1549064-1549083 MS.gene86370:intron 45.0%
ACGACATCCATGCAAGAATC+AGG - chr2.3:1550776-1550795 MS.gene86370:intron 45.0%
AGACTTCAGCTGTTCAAGTG+GGG - chr2.3:1551086-1551105 MS.gene86370:intron 45.0%
ATCCAAATCCAAATCCAGGC+GGG - chr2.3:1548268-1548287 MS.gene86370:CDS 45.0%
CAGACTTCAGCTGTTCAAGT+GGG - chr2.3:1551085-1551104 MS.gene86370:intron 45.0%
CCAGATCCAAATCCAAATCC+AGG - chr2.3:1548264-1548283 MS.gene86370:CDS 45.0%
CCCTTGAATTTGGACTTTGG+AGG - chr2.3:1548369-1548388 MS.gene86370:CDS 45.0%
CCTGGATTTGGATTTGGATC+TGG + chr2.3:1548267-1548286 None:intergenic 45.0%
CGGTAGATTTCACACACTCT+TGG + chr2.3:1548867-1548886 None:intergenic 45.0%
CTGGACCGCAGGAAATATTT+CGG + chr2.3:1550361-1550380 None:intergenic 45.0%
CTTCCCAGACATTGCGTATA+CGG + chr2.3:1549780-1549799 None:intergenic 45.0%
GAGAATAGATGGAATGGGAC+AGG - chr2.3:1549086-1549105 MS.gene86370:intron 45.0%
GATCCAAATCCAAATCCAGG+CGG - chr2.3:1548267-1548286 MS.gene86370:CDS 45.0%
GATTCCATCAGTATTAGGGC+TGG + chr2.3:1549504-1549523 None:intergenic 45.0%
GCCTCCAAAGTCCAAATTCA+AGG + chr2.3:1548373-1548392 None:intergenic 45.0%
GGAGGGAGAATAGATGGAAT+GGG - chr2.3:1549081-1549100 MS.gene86370:intron 45.0%
GGTGAGAATCAAAACATGGC+AGG - chr2.3:1550569-1550588 MS.gene86370:intron 45.0%
GTATACGCAATGTCTGGGAA+GGG - chr2.3:1549779-1549798 MS.gene86370:intron 45.0%
GTCAGTCCAATTGACATTGG+TGG - chr2.3:1548806-1548825 MS.gene86370:intron 45.0%
TAGATGGAATGGGACAGGAA+TGG - chr2.3:1549091-1549110 MS.gene86370:intron 45.0%
TATACGCAATGTCTGGGAAG+GGG - chr2.3:1549780-1549799 MS.gene86370:intron 45.0%
TCAGAAATTCTTCACGGGTC+TGG - chr2.3:1550333-1550352 MS.gene86370:intron 45.0%
TCAGGCCTTCTTGAAGGTTT+GGG - chr2.3:1548721-1548740 MS.gene86370:CDS 45.0%
TCCAGATATAGTCCTTCGCA+TGG + chr2.3:1551187-1551206 None:intergenic 45.0%
TCCATGCGAAGGACTATATC+TGG - chr2.3:1551183-1551202 MS.gene86370:CDS 45.0%
TCGCATTCACTAGCTGTATG+CGG - chr2.3:1549441-1549460 MS.gene86370:intron 45.0%
TGAAGTCTGCATCACAATGC+AGG + chr2.3:1551074-1551093 None:intergenic 45.0%
TGGAGGGAGAATAGATGGAA+TGG - chr2.3:1549080-1549099 MS.gene86370:intron 45.0%
TGTAAGGGAGAGAGGGAAAA+AGG - chr2.3:1550077-1550096 MS.gene86370:CDS 45.0%
TTCAGGCCTTCTTGAAGGTT+TGG - chr2.3:1548720-1548739 MS.gene86370:CDS 45.0%
TTCCCAGACATTGCGTATAC+GGG + chr2.3:1549779-1549798 None:intergenic 45.0%
TTGTTGAAAAGCAGGCAGGA+GGG + chr2.3:1551294-1551313 None:intergenic 45.0%
TTTCACCTTATGCCATGACC+TGG + chr2.3:1550380-1550399 None:intergenic 45.0%
! ATTTGGACTTTGGAGGCTTG+AGG - chr2.3:1548376-1548395 MS.gene86370:CDS 45.0%
! CTACTTGTTGAAAAGCAGGC+AGG + chr2.3:1551298-1551317 None:intergenic 45.0%
! GTCGCGTAGCTTTTGAACTT+TGG - chr2.3:1550041-1550060 MS.gene86370:CDS 45.0%
! TACGGGAGCTTTAGTGCATT+AGG + chr2.3:1549762-1549781 None:intergenic 45.0%
!! GGTGTTGATCTTGCAAGATC+TGG + chr2.3:1549121-1549140 None:intergenic 45.0%
!! TGTGCATGGTGGATGAGTAA+AGG + chr2.3:1548179-1548198 None:intergenic 45.0%
!!! CATTTTGGTGCCATAGGTGA+TGG - chr2.3:1548305-1548324 MS.gene86370:CDS 45.0%
AACCCGCCTGGATTTGGATT+TGG + chr2.3:1548273-1548292 None:intergenic 50.0%
AAGGTCACGCGTTCAAGTCT+TGG + chr2.3:1549865-1549884 None:intergenic 50.0%
AGTGATGCTTCTCCATGCGA+AGG - chr2.3:1551172-1551191 MS.gene86370:CDS 50.0%
ATGGAATGGGACAGGAATGG+TGG - chr2.3:1549094-1549113 MS.gene86370:intron 50.0%
CAAGCACAAGCACAACCACA+AGG - chr2.3:1548197-1548216 MS.gene86370:CDS 50.0%
CACCTTTCTGTAGAAGGTGG+AGG - chr2.3:1549063-1549082 MS.gene86370:intron 50.0%
CACGGTCCACCAATGTCAAT+TGG + chr2.3:1548815-1548834 None:intergenic 50.0%
CAGGAAGACATGGCTGCAAA+AGG + chr2.3:1549233-1549252 None:intergenic 50.0%
CGAAATATTTCCTGCGGTCC+AGG - chr2.3:1550359-1550378 MS.gene86370:CDS 50.0%
CGCATTCACTAGCTGTATGC+GGG - chr2.3:1549442-1549461 MS.gene86370:intron 50.0%
CGTATACGCAATGTCTGGGA+AGG - chr2.3:1549778-1549797 MS.gene86370:intron 50.0%
CTCCCGTATACGCAATGTCT+GGG - chr2.3:1549774-1549793 MS.gene86370:intron 50.0%
CTTGTTGAAAAGCAGGCAGG+AGG + chr2.3:1551295-1551314 None:intergenic 50.0%
GAAGGTGGAGGGAGAATAGA+TGG - chr2.3:1549075-1549094 MS.gene86370:intron 50.0%
GCAGACTTCAGCTGTTCAAG+TGG - chr2.3:1551084-1551103 MS.gene86370:intron 50.0%
GCTTCCAGCCCTAATACTGA+TGG - chr2.3:1549497-1549516 MS.gene86370:intron 50.0%
GTTGTGCTTGTGCTTGTGCA+TGG + chr2.3:1548193-1548212 None:intergenic 50.0%
TCAGTATTAGGGCTGGAAGC+AGG + chr2.3:1549497-1549516 None:intergenic 50.0%
TCCCTCCACCTTCTACAGAA+AGG + chr2.3:1549068-1549087 None:intergenic 50.0%
! CAAGCTCATGGTTCTGCTCA+GGG - chr2.3:1551259-1551278 MS.gene86370:CDS 50.0%
! TTTGAAGCGCCACTAACCGT+TGG + chr2.3:1549258-1549277 None:intergenic 50.0%
ACCGTTGGAGCAGGAAGACA+TGG + chr2.3:1549243-1549262 None:intergenic 55.0%
ATTTCCTGCGGTCCAGGTCA+TGG - chr2.3:1550365-1550384 MS.gene86370:CDS 55.0%
CAAGGCTCCCCCTACTTTGT+AGG - chr2.3:1549917-1549936 MS.gene86370:CDS 55.0%
CACCACGAGACCCTGACATA+TGG - chr2.3:1548995-1549014 MS.gene86370:intron 55.0%
CAGAAAGGTGATTCACCCCG+TGG + chr2.3:1549053-1549072 None:intergenic 55.0%
CGAGACCCTGACATATGGCA+TGG - chr2.3:1549000-1549019 MS.gene86370:intron 55.0%
CTACAAAGTAGGGGGAGCCT+TGG + chr2.3:1549919-1549938 None:intergenic 55.0%
CTTCCTGCTCCAACGGTTAG+TGG - chr2.3:1549246-1549265 MS.gene86370:intron 55.0%
GCCATGTCTTCCTGCTCCAA+CGG - chr2.3:1549239-1549258 MS.gene86370:intron 55.0%
GCTCCCGTATACGCAATGTC+TGG - chr2.3:1549773-1549792 MS.gene86370:intron 55.0%
GGAAAGAACCCGCCTGGATT+TGG + chr2.3:1548279-1548298 None:intergenic 55.0%
GTGCTTGTGCTTGTGCATGG+TGG + chr2.3:1548190-1548209 None:intergenic 55.0%
TGCCATATGTCAGGGTCTCG+TGG + chr2.3:1549000-1549019 None:intergenic 55.0%
! AGTGATGGAAAGAACCCGCC+TGG + chr2.3:1548285-1548304 None:intergenic 55.0%
! GCAAGCTCATGGTTCTGCTC+AGG - chr2.3:1551258-1551277 MS.gene86370:CDS 55.0%
!! GCATGGAGAAGCATCACTGC+AGG + chr2.3:1551170-1551189 None:intergenic 55.0%
!! TTCGGGTTGACCCAGAACGT+GGG + chr2.3:1548244-1548263 None:intergenic 55.0%
GCGGTCCAGGTCATGGCATA+AGG - chr2.3:1550372-1550391 MS.gene86370:CDS 60.0%
TATGCCATGACCTGGACCGC+AGG + chr2.3:1550372-1550391 None:intergenic 60.0%
! TAGGGGGAGCCTTGGTGCAA+CGG + chr2.3:1549911-1549930 None:intergenic 60.0%
!! GTTCGGGTTGACCCAGAACG+TGG + chr2.3:1548245-1548264 None:intergenic 60.0%
GCGCCACTAACCGTTGGAGC+AGG + chr2.3:1549252-1549271 None:intergenic 65.0%
TGGGAAGGGGTCCCGCCATT+TGG - chr2.3:1549793-1549812 MS.gene86370:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 1548116 1551375 1548116 ID=MS.gene86370
chr2.3 mRNA 1548116 1551375 1548116 ID=MS.gene86370.t1;Parent=MS.gene86370
chr2.3 exon 1551145 1551375 1551145 ID=MS.gene86370.t1.exon1;Parent=MS.gene86370.t1
chr2.3 CDS 1551145 1551375 1551145 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1550635 1550766 1550635 ID=MS.gene86370.t1.exon2;Parent=MS.gene86370.t1
chr2.3 CDS 1550635 1550766 1550635 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1550345 1550515 1550345 ID=MS.gene86370.t1.exon3;Parent=MS.gene86370.t1
chr2.3 CDS 1550345 1550515 1550345 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1550231 1550251 1550231 ID=MS.gene86370.t1.exon4;Parent=MS.gene86370.t1
chr2.3 CDS 1550231 1550251 1550231 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1549916 1550123 1549916 ID=MS.gene86370.t1.exon5;Parent=MS.gene86370.t1
chr2.3 CDS 1549916 1550123 1549916 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1549098 1549179 1549098 ID=MS.gene86370.t1.exon6;Parent=MS.gene86370.t1
chr2.3 CDS 1549098 1549179 1549098 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1548901 1549009 1548901 ID=MS.gene86370.t1.exon7;Parent=MS.gene86370.t1
chr2.3 CDS 1548901 1549009 1548901 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1548694 1548810 1548694 ID=MS.gene86370.t1.exon8;Parent=MS.gene86370.t1
chr2.3 CDS 1548694 1548810 1548694 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
chr2.3 exon 1548116 1548403 1548116 ID=MS.gene86370.t1.exon9;Parent=MS.gene86370.t1
chr2.3 CDS 1548116 1548403 1548116 ID=cds.MS.gene86370.t1;Parent=MS.gene86370.t1
Gene Sequence

>MS.gene86370

ATGAGATCTTCTTCTTCCATTTCTATATATATCATTGTTATTATCTCCATTGTACTTGTTCCTTTACTCATCCACCATGCACAAGCACAAGCACAACCACAAGGACTTGACTCTATTATCAAACTCCCACGTTCTGGGTCAACCCGAACCAGATCCAAATCCAAATCCAGGCGGGTTCTTTCCATCACTCATTTTGGTGCCATAGGTGATGGTTTTCATAATGACACTCAGGTATTAATTATGATACTGTTTTCCCTTGAATTTGGACTTTGGAGGCTTGAGGTTTGAGTTTATTTGATGTTGTTCGTACATTTTTGTTAATGATTTTTATCATGTACAAAATGTAATTGTTGTTCATTCACAAATGCATCATAGTGAAATGTAAATGATATTCATTCATATTCCACAAGGATGTTCTTGCAAGTTGGGTGTTTCTTTTTAAAATGTGAGCATAATAGAGAATTTTGATTTATAGCCACTGAATGTTAGGTGATTTGTCTCATTGAGCTAGATATAGGATAAGTAAATTTTAGAATCTTCATCAATGATACTTTGTTACCATGATATACTGATAAACAGGTTATTAATTTTTTTTATCTATCTTTTCAGGCCTTCTTGAAGGTTTGGGAAATTGCTTGTTCTCTCTCTGGATTCATCAATATTGTTTTTCCATATGAAAAAACATTTCTTGTCAGTCCAATTGACATTGGTGGACCGTGTCGATCTAAGATCACTTTGAGGGTAAGCACCAAGAGTGTGTGAAATCTACCGGATTTTAAACGAAATTCTGTCATATGCATCTTTCAATTCTTGAATGAAATGTGTTGTATTGAAAATGTTTATTATTATTTGTTTTATAGATCATAGGAACAATAGTTGCACCACGAGACCCTGACATATGGCATGGTTTAAATAAGCGCAAATGGATTTACTTCCACGGGGTGAATCACCTTTCTGTAGAAGGTGGAGGGAGAATAGATGGAATGGGACAGGAATGGTGGTCCAGATCTTGCAAGATCAACACCACTAATGTATTGCTATCTCAGAAACTTATTTTCATATGTAGTTGAAGTTTATTCATCAGTTTAACTAAGTGATGATGACTTCAAAATCTCCTTTTGCAGCCATGTCTTCCTGCTCCAACGGTTAGTGGCGCTTCAAAATATGGGGCAAACCAGTTCATTTCTCTAATCTGATGATACATTAGTTATGAATCTATTAGCTGAAATATGAAACTACTTTTACTATGTAGGCCTTGACTTTTCATAAATGCAAGAGTCTGAAAGTCAGAAACCTTGTGGTGCTAAATAGCCAAAAAATGCACATCGCATTCACTAGCTGTATGCGGGTTGTTGCATCACGTCTCAAAGTACTAGCACCTGCTTCCAGCCCTAATACTGATGGAATCCACATTAGTGCTACAAAAGGTGTTGAGATTAAAGATAGTGTAATTAGAACAGGTGTGTTATCCTCAATCTAATGCAATACTAGCGTTACTCATATTGGAAAATCTCAGTGATAGTTTAACATCTTATTTATTTTAACATATTTCAGAAATCATAGAAACCTGTTTTTAGTAAAATATAGGATAAGCAGAAAGAAACTAGCGTAACAACGAATAAACTTTGTAGGCATAATGGCAGCCTAATGCACTAAAGCTCCCGTATACGCAATGTCTGGGAAGGGGTCCCGCCATTTGGTGTATTGTATGCAGCCTTACCTTGTTTTTTACACAAGGGATTGTTTCCAAGACTTGAACGCGTGACCTTTCAGTCATGTGATAACAACTTTACCGTTGCACCAAGGCTCCCCCTACTTTGTAGGCATCTTATAAGTTTTTAAGTTTTATGATTATCATTATTATTTTTGAATGTATGGAACTAGCTGAATATAATATGCATGTCATTCCCTATATGATATTTTCAGTCGCGTAGCTTTTGAACTTTGGAAATGTTTAATGTTGTAAGGGAGAGAGGGAAAAAGGCAAGTGCAACCAACCTGAACAATAAACCAACAATAATGTAACATTGAAACACCATAAAAATGTGTAAATCATTTATAAGATCAGAGAAAATGTGTAACATTGAAATGCCATAAAAATGACTACTTTCGTTACCGTTTTGTAGAAGTTCTAGAATAAACTTAATGATCAAGTAATGTGTCAGAAGACAAACATTTCACTGCATTACATTTCAGGTGATGACTGCATCTCCATTGTCAGAAATTCTTCACGGGTCTGGATCCGAAATATTTCCTGCGGTCCAGGTCATGGCATAAGGTGAAAGTCATGTTCACTTTTAGTTCATTAGGACACCAAGTAGTATAAATTGTATAATTCTTAACCGATACTTGAACCTATTTTTCAGCATTGGTAGCTTAGGAAAATCAAACGTATGGGAGAAGATTCAAAATGTAATTGTTGATGGAGCTTATCTTTACAACACTGATAATGGGGTGAGAATCAAAACATGGCAGGTAACTTTCTTCGTAACCGTATCATTTTCATTCTCATTATATTTCACCTAGTGATGACAAGTCTATTGAGTCGAGCCAAATTTTCTTTAGGGTGGTAGTGGTTTTGCCTCCAAGATCACATTCCAGAATATCTTAATGGAAAATGTGTCCAATCCAATAATAATAGATCAATACTACTGCGATTCACGACATCCATGCAAGAATCAGGTATTGAATTTTAAGATATTTTTGCAGGGTTTTTTTTATATGTCTGCATGTTCATGTACTGACACTATTAATTAATAGTCAGTTATTTTTTTGAGAGGATAGCCTATATATTTTGAATAATTTGTAGAATATAATAGCTGATTTCACAATTTCCATCGATTATAATCATGTCAGTGACACACATTCCTGTCAATCTCCAACAAGGATTCAAATTAATGAAGTTTCATAATAATTTAATTCAATTGAAGATATTATGCCGTAAGAATGTAATGTCCTGCATTGTGATGCAGACTTCAGCTGTTCAAGTGGGGAACATATCCTTCATTAATATTCAAGGAACTTCGGCCACCGAAGAAACCATTAAATTTGCCTGCAGTGATGCTTCTCCATGCGAAGGACTATATCTGGAAAATATTTTTCTTCGATCATACTTTGGAGGAAATACAAGATCTTATTGTTGGCAAGCTCATGGTTCTGCTCAGGGTTATGTGTACCCTCCTGCCTGCTTTTCAACAAGTAGTGATTTAATTAGACAGAATGTCTTGTTAGAGCCAAATCCTGCTATTAATTCTGTCTGA
Protein sequence

>MS.gene86370.t1

MRSSSSISIYIIVIISIVLVPLLIHHAQAQAQPQGLDSIIKLPRSGSTRTRSKSKSRRVLSITHFGAIGDGFHNDTQAFLKVWEIACSLSGFINIVFPYEKTFLVSPIDIGGPCRSKITLRIIGTIVAPRDPDIWHGLNKRKWIYFHGVNHLSVEGGGRIDGMGQEWWSRSCKINTTNPCLPAPTALTFHKCKSLKVRNLVVLNSQKMHIAFTSCMRVVASRLKVLAPASSPNTDGIHISATKGVEIKDSVIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGSLGKSNVWEKIQNVIVDGAYLYNTDNGVRIKTWQGGSGFASKITFQNILMENVSNPIIIDQYYCDSRHPCKNQTSAVQVGNISFINIQGTSATEETIKFACSDASPCEGLYLENIFLRSYFGGNTRSYCWQAHGSAQGYVYPPACFSTSSDLIRQNVLLEPNPAINSV