AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36228

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36228.t1 MTR_2g103410 92.824 432 26 2 21 447 20 451 0.0 803
MS.gene36228.t1 MTR_7g113910 64.062 448 79 7 4 445 2 373 0.0 536
MS.gene36228.t1 MTR_2g103410 90.604 298 23 2 21 313 20 317 0.0 532
MS.gene36228.t1 MTR_1g052315 48.656 372 186 4 52 421 60 428 3.96e-119 355
MS.gene36228.t1 MTR_8g065030 45.501 389 209 3 48 435 57 443 3.89e-116 348
MS.gene36228.t1 MTR_2g060350 46.543 376 193 7 50 421 68 439 7.13e-113 339
MS.gene36228.t1 MTR_7g091850 47.861 374 191 4 50 421 70 441 2.66e-111 335
MS.gene36228.t1 MTR_7g091840 48.750 320 160 4 50 366 59 377 2.14e-101 308
MS.gene36228.t1 MTR_3g030540 45.845 373 196 5 51 421 65 433 1.36e-99 305
MS.gene36228.t1 MTR_6g005630 42.308 390 210 9 38 422 24 403 8.92e-98 300
MS.gene36228.t1 MTR_1g086390 43.570 381 201 8 55 423 80 458 1.26e-97 301
MS.gene36228.t1 MTR_4g094715 40.779 385 214 8 49 422 58 439 3.35e-93 289
MS.gene36228.t1 MTR_7g110050 41.799 378 209 8 55 422 66 442 8.07e-93 288
MS.gene36228.t1 MTR_2g103650 40.710 366 210 6 56 415 28 392 1.71e-90 280
MS.gene36228.t1 MTR_5g033680 38.619 391 226 7 55 434 58 445 7.18e-88 276
MS.gene36228.t1 MTR_2g049400 42.204 372 205 8 56 425 28 391 3.60e-87 271
MS.gene36228.t1 MTR_5g043350 38.830 376 218 6 56 426 29 397 2.34e-85 267
MS.gene36228.t1 MTR_6g028080 38.158 380 221 7 53 426 27 398 1.89e-83 262
MS.gene36228.t1 MTR_3g438050 37.306 386 229 7 46 425 17 395 1.99e-83 262
MS.gene36228.t1 MTR_2g032710 39.740 385 218 8 49 422 60 441 3.67e-83 263
MS.gene36228.t1 MTR_6g005630 40.000 390 196 11 38 422 24 380 4.45e-83 261
MS.gene36228.t1 MTR_3g084380 39.108 381 217 7 41 415 6 377 2.54e-81 256
MS.gene36228.t1 MTR_8g065010 37.065 402 218 9 52 422 103 500 2.85e-80 258
MS.gene36228.t1 MTR_5g034090 37.028 397 216 9 56 422 121 513 5.44e-80 257
MS.gene36228.t1 MTR_4g120320 39.895 381 212 12 53 424 49 421 6.43e-80 254
MS.gene36228.t1 MTR_4g083660 40.106 379 217 9 50 425 3 374 1.50e-79 251
MS.gene36228.t1 MTR_3g054320 38.743 382 217 6 56 432 30 399 1.80e-79 252
MS.gene36228.t1 MTR_4g084050 36.364 374 216 8 53 414 20 383 2.30e-78 249
MS.gene36228.t1 MTR_8g009810 39.529 382 221 8 47 425 26 400 2.94e-78 249
MS.gene36228.t1 MTR_0157s0060 37.867 375 216 5 61 430 3 365 1.79e-76 243
MS.gene36228.t1 MTR_4g034020 37.867 375 216 5 61 430 3 365 1.79e-76 243
MS.gene36228.t1 MTR_8g010070 38.144 388 217 8 43 425 19 388 9.28e-76 242
MS.gene36228.t1 MTR_8g010110 36.170 376 221 6 55 427 30 389 4.17e-75 240
MS.gene36228.t1 MTR_8g010080 37.867 375 213 8 55 426 30 387 5.18e-75 240
MS.gene36228.t1 MTR_2g435640 37.995 379 222 8 53 424 50 422 7.24e-75 241
MS.gene36228.t1 MTR_3g084360 35.602 382 233 6 49 425 17 390 1.52e-73 236
MS.gene36228.t1 MTR_1g012390 37.302 378 220 11 52 422 24 391 7.37e-73 234
MS.gene36228.t1 MTR_8g010090 35.467 375 223 7 55 426 30 388 9.95e-73 234
MS.gene36228.t1 MTR_7g035415 43.003 293 151 7 55 342 39 320 2.12e-70 226
MS.gene36228.t1 MTR_8g008765 37.048 332 190 5 52 380 27 342 3.11e-70 226
MS.gene36228.t1 MTR_8g010040 39.142 373 205 9 53 421 29 383 4.74e-69 224
MS.gene36228.t1 MTR_8g030930 36.053 380 227 10 54 424 25 397 1.39e-68 224
MS.gene36228.t1 MTR_2g058840 36.313 358 218 7 55 408 24 375 9.38e-67 219
MS.gene36228.t1 MTR_2g058670 36.164 365 211 8 55 408 24 377 2.36e-66 218
MS.gene36228.t1 MTR_1g013730 35.121 373 217 9 53 421 24 375 1.77e-65 215
MS.gene36228.t1 MTR_1g013740 34.595 370 217 8 56 421 35 383 3.70e-64 212
MS.gene36228.t1 MTR_8g077320 39.934 303 135 6 55 342 32 302 5.32e-64 211
MS.gene36228.t1 MTR_1g088160 34.031 382 234 10 55 426 34 407 2.02e-63 210
MS.gene36228.t1 MTR_2g029170 37.353 340 199 11 91 425 31 361 4.29e-63 208
MS.gene36228.t1 MTR_2g058640 34.884 387 216 10 55 424 24 391 2.20e-61 205
MS.gene36228.t1 MTR_5g097860 34.783 322 199 8 54 370 23 338 2.99e-58 195
MS.gene36228.t1 MTR_5g063430 36.545 301 175 7 54 349 23 312 3.30e-58 194
MS.gene36228.t1 MTR_8g010050 33.162 389 203 9 43 426 19 355 1.27e-57 194
MS.gene36228.t1 MTR_5g034090 36.364 286 152 6 56 313 121 404 3.99e-55 189
MS.gene36228.t1 MTR_8g008700 35.463 313 163 6 116 425 14 290 1.81e-54 183
MS.gene36228.t1 MTR_2g100040 30.601 366 190 11 35 394 9 316 9.55e-43 154
MS.gene36228.t1 MTR_8g031180 39.024 205 116 3 200 398 73 274 3.05e-40 145
MS.gene36228.t1 MTR_5g090160 27.366 391 233 13 56 410 44 419 2.07e-22 99.8
MS.gene36228.t1 MTR_4g124980 25.428 409 249 16 55 424 73 464 2.71e-21 96.7
MS.gene36228.t1 MTR_2g042740 25.236 424 260 17 55 436 55 463 3.34e-21 96.3
MS.gene36228.t1 MTR_7g110710 28.224 411 229 17 56 424 43 429 6.75e-20 92.0
MS.gene36228.t1 MTR_7g110710 28.224 411 229 17 56 424 43 429 1.08e-19 91.7
MS.gene36228.t1 MTR_3g449590 29.268 328 187 14 56 351 47 361 8.13e-19 89.0
MS.gene36228.t1 MTR_4g120730 29.720 286 176 10 154 424 153 428 1.71e-17 84.7
MS.gene36228.t1 MTR_7g078680 24.814 403 254 15 57 424 56 444 1.72e-16 82.0
MS.gene36228.t1 MTR_1g100050 25.173 433 267 17 1 397 1 412 3.98e-16 80.9
MS.gene36228.t1 MTR_1g086030 27.095 358 209 13 56 379 82 421 5.76e-16 80.5
MS.gene36228.t1 MTR_3g096330 26.748 329 194 12 140 438 174 485 7.35e-16 80.5
MS.gene36228.t1 MTR_1g099850 26.966 356 208 16 1 322 6 343 9.00e-16 79.7
MS.gene36228.t1 MTR_7g088550 29.843 191 117 5 154 332 163 348 2.22e-15 78.6
MS.gene36228.t1 MTR_1g086030 27.481 262 162 7 133 379 69 317 1.80e-14 75.5
MS.gene36228.t1 MTR_1g100060 27.027 259 165 9 154 397 206 455 7.32e-14 73.9
MS.gene36228.t1 MTR_8g098840 22.911 371 241 13 57 394 45 403 1.79e-13 72.4
MS.gene36228.t1 MTR_7g092470 25.217 345 208 12 56 370 48 372 1.62e-12 69.7
MS.gene36228.t1 MTR_1g100040 28.125 192 119 6 154 332 169 354 3.83e-12 68.6
MS.gene36228.t1 MTR_8g028725 26.201 229 148 7 154 368 168 389 7.82e-12 67.4
MS.gene36228.t1 MTR_2g435340 25.868 317 185 13 56 336 37 339 3.59e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36228.t1 AT1G80170 58.010 412 169 3 27 436 26 435 0.0 513
MS.gene36228.t1 AT1G80170 57.986 288 118 2 27 313 26 311 2.64e-122 359
MS.gene36228.t1 AT3G07970 50.432 347 167 4 52 396 67 410 2.81e-117 350
MS.gene36228.t1 AT1G70500 44.156 385 211 4 48 430 59 441 5.44e-117 350
MS.gene36228.t1 AT2G41850 48.958 384 184 7 47 427 59 433 7.32e-117 349
MS.gene36228.t1 AT1G23460 44.935 385 208 4 48 430 35 417 3.09e-114 342
MS.gene36228.t1 AT1G23460 44.935 385 208 4 48 430 59 441 6.83e-114 342
MS.gene36228.t1 AT3G57510 45.663 392 197 7 33 421 50 428 1.25e-112 338
MS.gene36228.t1 AT1G56710 44.125 383 200 7 55 425 47 427 1.73e-103 315
MS.gene36228.t1 AT3G15720 41.013 395 215 7 52 439 20 403 2.61e-96 297
MS.gene36228.t1 AT3G15720 41.013 395 215 7 52 439 19 402 3.53e-96 297
MS.gene36228.t1 AT5G14650 40.409 391 221 9 42 427 37 420 2.26e-95 294
MS.gene36228.t1 AT3G15720 40.506 395 214 8 52 439 19 399 1.21e-93 290
MS.gene36228.t1 AT1G02460 43.081 383 201 10 55 422 88 468 1.81e-93 291
MS.gene36228.t1 AT1G05660 38.727 377 222 7 52 426 24 393 2.04e-92 285
MS.gene36228.t1 AT1G05650 38.522 379 224 7 50 426 22 393 9.08e-91 281
MS.gene36228.t1 AT2G43890 39.247 372 214 9 57 425 30 392 3.08e-90 279
MS.gene36228.t1 AT4G01890 39.318 440 233 15 11 421 9 443 7.34e-89 278
MS.gene36228.t1 AT1G48100 37.186 398 235 9 49 434 73 467 5.11e-88 276
MS.gene36228.t1 AT3G26610 36.768 427 253 8 9 421 17 440 1.85e-86 272
MS.gene36228.t1 AT2G43880 40.054 372 213 8 56 425 31 394 3.02e-86 269
MS.gene36228.t1 AT2G43870 42.133 375 206 9 50 421 15 381 3.13e-86 269
MS.gene36228.t1 AT3G59850 40.533 375 213 8 54 425 21 388 4.61e-84 263
MS.gene36228.t1 AT4G35670 38.830 376 219 5 57 429 25 392 6.60e-84 263
MS.gene36228.t1 AT3G59850 40.533 375 213 8 54 425 65 432 1.09e-83 264
MS.gene36228.t1 AT1G10640 39.599 399 207 9 54 422 117 511 4.10e-83 265
MS.gene36228.t1 AT1G65570 38.095 378 223 9 52 425 27 397 3.49e-82 259
MS.gene36228.t1 AT5G44840 36.074 377 231 5 54 427 22 391 4.21e-82 258
MS.gene36228.t1 AT5G27530 37.731 379 217 4 54 429 51 413 7.00e-82 260
MS.gene36228.t1 AT5G17200 39.547 397 203 8 43 414 26 410 8.81e-82 258
MS.gene36228.t1 AT1G60590 37.010 408 214 11 51 422 118 518 1.22e-80 259
MS.gene36228.t1 AT3G15720 40.115 349 191 7 98 439 2 339 9.39e-80 252
MS.gene36228.t1 AT2G43860 39.142 373 217 8 56 425 33 398 1.56e-77 247
MS.gene36228.t1 AT1G78400 37.302 378 224 9 53 424 32 402 5.12e-77 246
MS.gene36228.t1 AT1G17150 36.598 388 232 10 46 426 22 402 1.57e-73 236
MS.gene36228.t1 AT4G18180 37.532 389 219 10 55 424 38 421 2.00e-72 234
MS.gene36228.t1 AT1G02790 35.990 389 225 7 48 424 44 420 4.35e-72 233
MS.gene36228.t1 AT3G07830 36.313 358 216 8 72 424 37 387 1.90e-71 231
MS.gene36228.t1 AT5G44830 35.608 337 198 4 92 426 12 331 2.59e-70 226
MS.gene36228.t1 AT2G15450 34.359 390 238 11 48 426 22 404 5.06e-69 225
MS.gene36228.t1 AT5G48140 35.833 360 218 7 72 426 37 388 5.52e-69 224
MS.gene36228.t1 AT1G80140 37.391 345 200 10 87 425 2 336 3.91e-68 220
MS.gene36228.t1 AT2G15460 34.805 385 233 11 48 421 22 399 5.79e-68 222
MS.gene36228.t1 AT3G07820 35.196 358 220 8 72 424 36 386 2.26e-67 220
MS.gene36228.t1 AT3G07840 36.313 358 216 8 72 424 37 387 3.03e-67 220
MS.gene36228.t1 AT2G43880 40.134 299 170 7 56 352 31 322 5.40e-67 217
MS.gene36228.t1 AT2G15470 34.103 390 239 11 48 426 22 404 3.40e-66 218
MS.gene36228.t1 AT2G33160 35.401 387 236 8 46 424 22 402 4.04e-66 224
MS.gene36228.t1 AT1G43080 33.770 382 236 10 54 425 29 403 6.57e-66 217
MS.gene36228.t1 AT4G32380 35.840 399 238 11 53 443 23 411 2.71e-65 216
MS.gene36228.t1 AT2G26620 33.071 381 240 10 54 426 29 402 9.34e-65 214
MS.gene36228.t1 AT1G43090 33.957 374 230 10 54 417 29 395 6.08e-64 213
MS.gene36228.t1 AT4G13760 31.771 384 243 9 54 426 29 404 2.75e-63 210
MS.gene36228.t1 AT4G35670 38.889 288 167 3 139 425 2 281 7.63e-63 205
MS.gene36228.t1 AT1G43100 33.690 374 231 10 54 417 29 395 5.35e-62 207
MS.gene36228.t1 AT2G40310 31.414 382 247 8 54 426 29 404 2.37e-61 205
MS.gene36228.t1 AT3G14040 35.294 374 230 8 56 424 71 437 1.89e-58 198
MS.gene36228.t1 AT5G39910 37.624 303 162 7 55 351 35 316 1.03e-57 194
MS.gene36228.t1 AT3G07850 34.293 382 239 8 48 424 62 436 5.67e-57 194
MS.gene36228.t1 AT5G14650 36.861 274 166 5 42 313 37 305 6.35e-57 191
MS.gene36228.t1 AT4G32375 38.519 270 157 4 131 398 5 267 2.04e-55 190
MS.gene36228.t1 AT4G32370 37.134 307 173 9 51 346 29 326 1.42e-53 182
MS.gene36228.t1 AT4G32380 36.513 304 178 10 53 351 23 316 4.84e-48 170
MS.gene36228.t1 AT3G62110 30.172 348 195 11 56 368 43 377 8.30e-25 107
MS.gene36228.t1 AT3G62110 30.172 348 195 11 56 368 43 377 8.30e-25 107
MS.gene36228.t1 AT5G41870 27.549 461 263 18 3 424 4 432 1.47e-22 100
MS.gene36228.t1 AT4G33440 29.321 324 173 13 52 336 68 374 1.95e-20 94.0
MS.gene36228.t1 AT3G42950 24.590 427 257 16 55 435 65 472 9.17e-20 92.0
MS.gene36228.t1 AT4G23820 27.394 376 225 11 56 397 41 402 3.83e-19 89.7
MS.gene36228.t1 AT5G49215 27.252 433 241 17 45 429 30 436 3.38e-18 87.0
MS.gene36228.t1 AT5G49215 27.252 433 241 17 45 429 32 438 3.71e-18 87.0
MS.gene36228.t1 AT1G19170 25.000 412 248 17 55 424 86 478 5.19e-18 86.7
MS.gene36228.t1 AT3G48950 24.734 376 227 14 58 394 47 405 9.11e-17 82.8
MS.gene36228.t1 AT3G06770 26.170 470 257 18 5 424 2 431 2.71e-14 75.1
MS.gene36228.t1 AT3G06770 26.115 471 258 18 4 424 2 432 3.50e-14 74.7
MS.gene36228.t1 AT2G23900 24.148 352 218 15 58 373 58 396 5.16e-14 74.3
MS.gene36228.t1 AT4G23500 27.749 191 115 6 154 329 181 363 1.67e-13 72.8
MS.gene36228.t1 AT3G61490 25.733 307 178 12 57 327 46 338 8.01e-13 70.5
MS.gene36228.t1 AT3G61490 25.733 307 178 12 57 327 46 338 8.01e-13 70.5
MS.gene36228.t1 AT3G61490 25.733 307 178 12 57 327 46 338 8.01e-13 70.5
MS.gene36228.t1 AT3G61490 26.159 302 173 12 57 322 159 446 8.75e-13 70.9
MS.gene36228.t1 AT3G61490 25.733 307 178 12 57 327 61 353 9.91e-13 70.5
MS.gene36228.t1 AT3G57790 24.277 346 208 16 56 366 35 361 2.68e-11 65.9
MS.gene36228.t1 AT3G57790 24.277 346 208 16 56 366 35 361 2.68e-11 65.9
MS.gene36228.t1 AT3G06770 26.829 287 183 8 154 424 69 344 7.98e-11 63.9
MS.gene36228.t1 AT3G06770 25.970 335 205 10 122 424 39 362 1.00e-10 63.5
MS.gene36228.t1 AT3G06770 25.970 335 205 10 122 424 39 362 1.00e-10 63.5

Find 0 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTTATAGATCTT+AGG - 15689:12773-12792 MS.gene36228:intron 10.0%
!! AAATGTGTAAATCATTTATA+AGG - 15689:14001-14020 MS.gene36228:intron 15.0%
!! AACAATGATATATATAGAAA+TGG + 15689:11972-11991 None:intergenic 15.0%
!! ATTATACAATTTATACTACT+TGG + 15689:14280-14299 None:intergenic 15.0%
!! ATTTAAAGAAATATTCAATG+CGG + 15689:14557-14576 None:intergenic 15.0%
!! TTTAAATAGTAATAACATGT+TGG - 15689:13467-13486 MS.gene36228:intron 15.0%
!!! AAATGATTTACACATTTTTA+TGG + 15689:13998-14017 None:intergenic 15.0%
!!! ACTTGTTTTTAGTAAAATAT+AGG - 15689:13527-13546 MS.gene36228:intron 15.0%
!!! ATTTTTTTATCTATCTTTTC+AGG - 15689:12506-12525 MS.gene36228:intron 15.0%
!!! CATTATTATTTTTGAATGTA+TGG - 15689:13815-13834 MS.gene36228:intron 15.0%
!!! TAGTATTGATCTATTATTAT+TGG + 15689:15248-15267 None:intergenic 15.0%
!! AAACTACCATTGATATTTAA+AGG + 15689:14680-14699 None:intergenic 20.0%
!! ACAACTGAAAATATCATATA+GGG + 15689:13870-13889 None:intergenic 20.0%
!! ATATCCTTCATTAATATTCT+AGG - 15689:15597-15616 MS.gene36228:intron 20.0%
!! ATTCAAAATGTAATTGTTGA+TGG - 15689:14367-14386 MS.gene36228:intron 20.0%
!! CAAATCATTCAAAACTATAT+AGG + 15689:15403-15422 None:intergenic 20.0%
!! TAACAATGAATAAACTTTGT+AGG - 15689:13571-13590 MS.gene36228:intron 20.0%
!! TTGATCTATTATTATTGGAT+TGG + 15689:15243-15262 None:intergenic 20.0%
!! TTTAAAGAAATATTCAATGC+GGG + 15689:14556-14575 None:intergenic 20.0%
!! TTTCAATGTTACATTATTGT+TGG + 15689:13973-13992 None:intergenic 20.0%
!!! ACAAGAAAAGTTTTTTCATA+TGG + 15689:12591-12610 None:intergenic 20.0%
!!! ATTTTTCTTCAATCATACTT+TGG - 15689:15696-15715 MS.gene36228:CDS 20.0%
!!! GAATTTTAAGATATTTTTGC+TGG - 15689:15304-15323 MS.gene36228:intron 20.0%
! AAAGATAGTGTAATTAGAAC+AGG - 15689:13366-13385 MS.gene36228:intron 25.0%
! AATAAACTTTGTAGGCATAA+GGG - 15689:13579-13598 MS.gene36228:CDS 25.0%
! AATGAAAGTAGTCATTTCTA+TGG + 15689:14053-14072 None:intergenic 25.0%
! AGTTCCTAGAATATTAATGA+AGG + 15689:15604-15623 None:intergenic 25.0%
! ATCTATACAACACTGATAAT+GGG - 15689:15048-15067 MS.gene36228:intron 25.0%
! ATGTATTACGATATTTCTCT+AGG + 15689:14604-14623 None:intergenic 25.0%
! CACAACTGAAAATATCATAT+AGG + 15689:13871-13890 None:intergenic 25.0%
! CTTGATCATTAAGTTTATTC+TGG + 15689:14093-14112 None:intergenic 25.0%
! GAAATACAAGATCTTATTGT+TGG - 15689:15721-15740 MS.gene36228:CDS 25.0%
! GGAAATGTTTAATGTTGTAA+GGG - 15689:13906-13925 MS.gene36228:intron 25.0%
! TGAAAAATAGGTTCAAGTAT+CGG + 15689:14309-14328 None:intergenic 25.0%
! TGAAACTTCATTTACTATGT+AGG - 15689:13158-13177 MS.gene36228:intron 25.0%
! TGGAAATGTTTAATGTTGTA+AGG - 15689:13905-13924 MS.gene36228:intron 25.0%
! TGTATTACGATATTTCTCTA+GGG + 15689:14603-14622 None:intergenic 25.0%
! TTAAAGAAATATTCAATGCG+GGG + 15689:14555-14574 None:intergenic 25.0%
!! AGAGAAATCTGTTTAAAATC+TGG + 15689:12690-12709 None:intergenic 25.0%
!! CATTTTCCATTAAGATATTC+TGG + 15689:15217-15236 None:intergenic 25.0%
!! TCATTAATTTGAATCCTTGT+TGG + 15689:15498-15517 None:intergenic 25.0%
!!! AAAATGTAATTGTTGATGGT+AGG - 15689:14371-14390 MS.gene36228:intron 25.0%
!!! ATAAAGTACTTTTCTGCATT+CGG - 15689:14744-14763 MS.gene36228:intron 25.0%
!!! ATGTTCACTTTTAGTTCATT+AGG - 15689:14251-14270 MS.gene36228:intron 25.0%
!!! TTACCTTGTTTTTTACACAA+GGG - 15689:13678-13697 MS.gene36228:intron 25.0%
!!! TTATTGTTGGTTTATTGTTC+AGG + 15689:13960-13979 None:intergenic 25.0%
AAATTTAATGGTTTCTTCGG+TGG + 15689:15631-15650 None:intergenic 30.0%
AATCCCTTGTGTAAAAAACA+AGG + 15689:13684-13703 None:intergenic 30.0%
ACAGAATTAATAGCAGGATT+TGG + 15689:15837-15856 None:intergenic 30.0%
ACATCAAAAGTCCAAATTCA+AGG + 15689:12198-12217 None:intergenic 30.0%
ACCATGATATACTGATAAAC+AGG - 15689:12477-12496 MS.gene36228:intron 30.0%
ACCTGTTTATCAGTATATCA+TGG + 15689:12481-12500 None:intergenic 30.0%
ACTGACATGATTATAATCGA+TGG + 15689:15454-15473 None:intergenic 30.0%
ATATTCATTCATAGTCCACA+AGG - 15689:12308-12327 MS.gene36228:intron 30.0%
ATGGTTTAAATAAGCGCAAA+TGG - 15689:12831-12850 MS.gene36228:intron 30.0%
ATTATGAAAACCATCACCTA+TGG + 15689:12143-12162 None:intergenic 30.0%
ATTTATAGCCACTGAATGTT+AGG - 15689:12387-12406 MS.gene36228:intron 30.0%
CACATTCCAGAATATCTTAA+TGG - 15689:15208-15227 MS.gene36228:CDS 30.0%
CATCAAAAGTCCAAATTCAA+GGG + 15689:12197-12216 None:intergenic 30.0%
CATCTATACAACACTGATAA+TGG - 15689:15047-15066 MS.gene36228:intron 30.0%
CTTAGGAAAATCAAACGTAT+GGG - 15689:14339-14358 MS.gene36228:intron 30.0%
CTTGCATTTATGAAAAGTCA+AGG + 15689:13184-13203 None:intergenic 30.0%
CTTGTGTAAAAAACAAGGTA+AGG + 15689:13679-13698 None:intergenic 30.0%
GAATAAACTTTGTAGGCATA+AGG - 15689:13578-13597 MS.gene36228:CDS 30.0%
GAATAAAGGAACAAGTACAA+TGG + 15689:12002-12021 None:intergenic 30.0%
GGCAAATTTAATGGTTTCTT+CGG + 15689:15634-15653 None:intergenic 30.0%
GTATTACGATATTTCTCTAG+GGG + 15689:14602-14621 None:intergenic 30.0%
GTTGCTCCTTTAAATATCAA+TGG - 15689:14671-14690 MS.gene36228:intron 30.0%
TATAAGATGCCTACAAAGTA+GGG + 15689:13773-13792 None:intergenic 30.0%
TGTTAAAGTGAGCATATTGA+TGG + 15689:14630-14649 None:intergenic 30.0%
TTAATGTTGTAAGGGAGATA+GGG - 15689:13914-13933 MS.gene36228:intron 30.0%
TTATAAGATGCCTACAAAGT+AGG + 15689:13774-13793 None:intergenic 30.0%
TTTAATGTTGTAAGGGAGAT+AGG - 15689:13913-13932 MS.gene36228:intron 30.0%
TTTCTTCAATCATACTTTGG+AGG - 15689:15699-15718 MS.gene36228:CDS 30.0%
! AATGCTAGTGTTACTCATAT+TGG - 15689:13411-13430 MS.gene36228:intron 30.0%
! ATACTGTTTTCCCTTGAATT+TGG - 15689:12184-12203 MS.gene36228:CDS 30.0%
! GTTGTGTAGCTTTTAAACTT+TGG - 15689:13885-13904 MS.gene36228:intron 30.0%
! TCTATACAACACTGATAATG+GGG - 15689:15049-15068 MS.gene36228:intron 30.0%
!! ATTCTGGAACTTCTACAAAA+CGG + 15689:14077-14096 None:intergenic 30.0%
!! CAGAAAAGTACTTTATACAC+GGG + 15689:14827-14846 None:intergenic 30.0%
!! GCAGAAAAGTACTTTATACA+CGG + 15689:14828-14847 None:intergenic 30.0%
!! TAAAGTACTTTTCTGCATTC+GGG - 15689:14745-14764 MS.gene36228:intron 30.0%
!! TTGAACCTATTTTTCAGCAT+TGG - 15689:14313-14332 MS.gene36228:intron 30.0%
!!! CTTACCTTGTTTTTTACACA+AGG - 15689:13677-13696 MS.gene36228:intron 30.0%
AAAGTGATCTTAGATCGACA+AGG + 15689:12636-12655 None:intergenic 35.0%
AACTTGCAAAAACATCCTTG+TGG + 15689:12326-12345 None:intergenic 35.0%
AAGTACTTTATACACGGGTA+TGG + 15689:14822-14841 None:intergenic 35.0%
AAGTATATGAGAATCGGGTA+TGG + 15689:14442-14461 None:intergenic 35.0%
AATTTCCCAAACCTTCAAGA+AGG + 15689:12532-12551 None:intergenic 35.0%
ACAAATCACCTAACATTCAG+TGG + 15689:12398-12417 None:intergenic 35.0%
ACGGGTAAGTATATGAGAAT+CGG + 15689:14448-14467 None:intergenic 35.0%
ACTAGCATTGCATTAGATTG+AGG + 15689:13400-13419 None:intergenic 35.0%
AGCTACCAATGCTGAAAAAT+AGG + 15689:14321-14340 None:intergenic 35.0%
AGTACTTTATACACGGGTAT+GGG + 15689:14821-14840 None:intergenic 35.0%
AGTATATGAGAATCGGGTAT+GGG + 15689:14441-14460 None:intergenic 35.0%
ATAAGATGCCTACAAAGTAG+GGG + 15689:13772-13791 None:intergenic 35.0%
ATAATAGAGTCAAGTCCTTG+TGG + 15689:12040-12059 None:intergenic 35.0%
ATCACTGCAGGCAAATTTAA+TGG + 15689:15643-15662 None:intergenic 35.0%
ATCCACATTAGTGCTACAAA+AGG - 15689:13333-13352 MS.gene36228:intron 35.0%
ATTGTTATCACGTGACTGAA+AGG + 15689:13730-13749 None:intergenic 35.0%
ATTTGGATTTGGATCTGGTT+CGG + 15689:12087-12106 None:intergenic 35.0%
CATACAATACACCAAATGGT+GGG + 15689:13653-13672 None:intergenic 35.0%
CATAGTCAGAAATTCTTCAC+GGG - 15689:14176-14195 MS.gene36228:intron 35.0%
CCATAGTCAGAAATTCTTCA+CGG - 15689:14175-14194 MS.gene36228:intron 35.0%
CGATTTCAAAACACAGGTAT+GGG + 15689:14908-14927 None:intergenic 35.0%
CTGAGATAGCAATACATTAG+TGG + 15689:12954-12973 None:intergenic 35.0%
GCTTAGGAAAATCAAACGTA+TGG - 15689:14338-14357 MS.gene36228:intron 35.0%
GTCATTTCTATGGTGTTTCA+AGG + 15689:14043-14062 None:intergenic 35.0%
TAATGTTGTAAGGGAGATAG+GGG - 15689:13915-13934 MS.gene36228:intron 35.0%
TCAATAGACTTGTCATCACT+AGG + 15689:15143-15162 None:intergenic 35.0%
TCTGAAAGTCAGAAACCTTA+TGG - 15689:13206-13225 MS.gene36228:intron 35.0%
TGTCTCATTGAGCTAGATAT+AGG - 15689:12415-12434 MS.gene36228:intron 35.0%
TTCAATACCTGATTCTTGCA+TGG + 15689:15287-15306 None:intergenic 35.0%
TTTGGCTATTTAGCACCATA+AGG + 15689:13224-13243 None:intergenic 35.0%
! GAGTCGAGCCAAATTTTAAA+GGG - 15689:15161-15180 MS.gene36228:CDS 35.0%
! GTTCTTTCCATCACTCATTT+TGG - 15689:12115-12134 MS.gene36228:CDS 35.0%
! TCGATCTAAGATCACTTTGA+GGG - 15689:12638-12657 MS.gene36228:intron 35.0%
! TGAGTCGAGCCAAATTTTAA+AGG - 15689:15160-15179 MS.gene36228:CDS 35.0%
! TGGACTTTTGATGTTGTTGT+TGG - 15689:12204-12223 MS.gene36228:CDS 35.0%
! TGGTTTTCATAATGACACTC+AGG - 15689:12150-12169 MS.gene36228:CDS 35.0%
!! ACAAGGATGTTTTTGCAAGT+TGG - 15689:12325-12344 MS.gene36228:intron 35.0%
!! CAAGGATGTTTTTGCAAGTT+GGG - 15689:12326-12345 MS.gene36228:intron 35.0%
!! GATATTCTGGAATGTGATCT+TGG + 15689:15204-15223 None:intergenic 35.0%
!! TGTTGGTTTATTGTTCAGGT+TGG + 15689:13956-13975 None:intergenic 35.0%
!!! ATACCTGTGTTTTGAAATCG+GGG - 15689:14908-14927 MS.gene36228:CDS 35.0%
!!! CAGACAGTGATTTTTTTGAG+AGG - 15689:15373-15392 MS.gene36228:intron 35.0%
!!! CATACCTGTGTTTTGAAATC+GGG - 15689:14907-14926 MS.gene36228:CDS 35.0%
!!! CCATACCTGTGTTTTGAAAT+CGG - 15689:14906-14925 MS.gene36228:CDS 35.0%
!!! TGAATGCGATGTGCATTTTT+TGG + 15689:13242-13261 None:intergenic 35.0%
!!! TTTTTCAGCATTGGTAGCTT+AGG - 15689:14322-14341 MS.gene36228:intron 35.0%
AAAACCCGTCAAATTGGGTT+TGG - 15689:14969-14988 MS.gene36228:CDS 40.0%
AATCACCTTTCTGTAGAAGG+TGG - 15689:12872-12891 MS.gene36228:intron 40.0%
AATCCTTGTTGGAGATTGAC+AGG + 15689:15487-15506 None:intergenic 40.0%
AATGTTGTAAGGGAGATAGG+GGG - 15689:13916-13935 MS.gene36228:intron 40.0%
ACTGCATTATGTCCCATTTC+AGG - 15689:14138-14157 MS.gene36228:intron 40.0%
AGAAATATTCAATGCGGGGA+CGG + 15689:14551-14570 None:intergenic 40.0%
AGCACTAATGTGGATTCCAT+CGG + 15689:13328-13347 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG - 15689:14944-14963 MS.gene36228:CDS 40.0%
ATAGATGTGCTCCATCAACT+AGG + 15689:15034-15053 None:intergenic 40.0%
ATCACTACTTGTCGAAAAGC+AGG + 15689:15787-15806 None:intergenic 40.0%
ATGCAGTCATCACCTGAAAT+GGG + 15689:14153-14172 None:intergenic 40.0%
ATGGGGTGAGAATCAAAACA+TGG - 15689:15066-15085 MS.gene36228:intron 40.0%
ATGTGGATTCCATCGGTATT+AGG + 15689:13321-13340 None:intergenic 40.0%
ATTATCAAACTCCCACGTTC+TGG - 15689:12055-12074 MS.gene36228:CDS 40.0%
ATTCCTGTCAATCTCCAACA+AGG - 15689:15481-15500 MS.gene36228:intron 40.0%
CCGATTTCAAAACACAGGTA+TGG + 15689:14909-14928 None:intergenic 40.0%
CCGTGAAGAATTTCTGACTA+TGG + 15689:14178-14197 None:intergenic 40.0%
CGGGTAAGTATATGAGAATC+GGG + 15689:14447-14466 None:intergenic 40.0%
CTGGACCACAGGAAATATTT+CGG + 15689:14209-14228 None:intergenic 40.0%
CTTGTCAGTCCAATTGACAT+TGG - 15689:12606-12625 MS.gene36228:CDS 40.0%
GAAATTGCTTGTTCTCTCTC+TGG - 15689:12546-12565 MS.gene36228:CDS 40.0%
GCATACAATACACCAAATGG+TGG + 15689:13654-13673 None:intergenic 40.0%
GCTGCATACAATACACCAAA+TGG + 15689:13657-13676 None:intergenic 40.0%
GTATATGAGAATCGGGTATG+GGG + 15689:14440-14459 None:intergenic 40.0%
GTGAATCACCTTTCTGTAGA+AGG - 15689:12869-12888 MS.gene36228:intron 40.0%
GTTAGTGGCGCTTCAAAATA+TGG - 15689:13073-13092 MS.gene36228:intron 40.0%
TAAGATGCCTACAAAGTAGG+GGG + 15689:13771-13790 None:intergenic 40.0%
TATGGCACCAAAATGAGTGA+TGG + 15689:12125-12144 None:intergenic 40.0%
TCCAGATATAGTCCTTCACA+TGG + 15689:15672-15691 None:intergenic 40.0%
TCCATGTGAAGGACTATATC+TGG - 15689:15668-15687 MS.gene36228:CDS 40.0%
TCTTATTGTTGGCAAGCTCA+TGG - 15689:15732-15751 MS.gene36228:CDS 40.0%
TGGATCCGAAATATTTCCTG+TGG - 15689:14201-14220 MS.gene36228:intron 40.0%
TGTGGATTCCATCGGTATTA+GGG + 15689:13320-13339 None:intergenic 40.0%
TTAAACCATGCCATACGTCA+GGG + 15689:12820-12839 None:intergenic 40.0%
TTATCAAACTCCCACGTTCT+GGG - 15689:12056-12075 MS.gene36228:CDS 40.0%
TTCAAAACACAGGTATGGGA+CGG + 15689:14904-14923 None:intergenic 40.0%
TTCAATTTCTCATCCCCGTT+GGG + 15689:14484-14503 None:intergenic 40.0%
TTTAAACCATGCCATACGTC+AGG + 15689:12821-12840 None:intergenic 40.0%
TTTCCCCGATTTCAAAACAC+AGG + 15689:14914-14933 None:intergenic 40.0%
! CAAATGGATTTACTTCCACG+GGG - 15689:12847-12866 MS.gene36228:intron 40.0%
! CACCTTTTGTAGCACTAATG+TGG + 15689:13338-13357 None:intergenic 40.0%
! CGCAAATGGATTTACTTCCA+CGG - 15689:12845-12864 MS.gene36228:intron 40.0%
! GCAAATGGATTTACTTCCAC+GGG - 15689:12846-12865 MS.gene36228:intron 40.0%
! GTCGATCTAAGATCACTTTG+AGG - 15689:12637-12656 MS.gene36228:intron 40.0%
! TTTGGATTTGGATCTGGTTC+GGG + 15689:12086-12105 None:intergenic 40.0%
!! ATCTTTTCAGGCCTTCTTGA+AGG - 15689:12518-12537 MS.gene36228:CDS 40.0%
!! ATTCTGGAATGTGATCTTGG+AGG + 15689:15201-15220 None:intergenic 40.0%
!! CAAATTTTAAAGGGTGGGAG+TGG - 15689:15170-15189 MS.gene36228:CDS 40.0%
!! CACTCCCACCCTTTAAAATT+TGG + 15689:15172-15191 None:intergenic 40.0%
!! CGAGCCAAATTTTAAAGGGT+GGG - 15689:15165-15184 MS.gene36228:CDS 40.0%
!! GTAATTGTTGATGGTAGGCA+TGG - 15689:14376-14395 MS.gene36228:intron 40.0%
!! TCGAGCCAAATTTTAAAGGG+TGG - 15689:15164-15183 MS.gene36228:CDS 40.0%
!! TGTGCATGGTGGATGAATAA+AGG + 15689:12016-12035 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG + 15689:14944-14963 None:intergenic 40.0%
!!! ATCACTCATTTTGGTGCCAT+AGG - 15689:12124-12143 MS.gene36228:CDS 40.0%
AAATATTCAATGCGGGGACG+GGG + 15689:14549-14568 None:intergenic 45.0%
ACCTTTCTGTAGAAGGTGGA+GGG - 15689:12876-12895 MS.gene36228:intron 45.0%
ACGACATCCATGCAAGAATC+AGG - 15689:15277-15296 MS.gene36228:intron 45.0%
AGTGATGCTTCTCCATGTGA+AGG - 15689:15657-15676 MS.gene36228:CDS 45.0%
ATCCAAATCCAAATCCAGGC+GGG - 15689:12093-12112 MS.gene36228:CDS 45.0%
CAAGGTCCACCAATGTCAAT+TGG + 15689:12618-12637 None:intergenic 45.0%
CAGACTTCAGCTGTTCAAGT+GGG - 15689:15570-15589 MS.gene36228:intron 45.0%
CATATGCAATGTCTGGGAAG+GGG - 15689:13626-13645 MS.gene36228:CDS 45.0%
CCAGATCCAAATCCAAATCC+AGG - 15689:12089-12108 MS.gene36228:CDS 45.0%
CCGAACCAAACCCAATTTGA+CGG + 15689:14977-14996 None:intergenic 45.0%
CCTGGATTTGGATTTGGATC+TGG + 15689:12092-12111 None:intergenic 45.0%
CGAAATATTTCCTGTGGTCC+AGG - 15689:14207-14226 MS.gene36228:intron 45.0%
CGAACCAAACCCAATTTGAC+GGG + 15689:14976-14995 None:intergenic 45.0%
CTTCCCAGACATTGCATATG+CGG + 15689:13626-13645 None:intergenic 45.0%
CTTTATACACGGGTATGGGA+CGG + 15689:14817-14836 None:intergenic 45.0%
GAAATATTCAATGCGGGGAC+GGG + 15689:14550-14569 None:intergenic 45.0%
GAGAATAGATGGAATGGGAC+AGG - 15689:12898-12917 MS.gene36228:intron 45.0%
GATCCAAATCCAAATCCAGG+CGG - 15689:12092-12111 MS.gene36228:CDS 45.0%
GATGCAGTCATCACCTGAAA+TGG + 15689:14154-14173 None:intergenic 45.0%
GCATATGCAATGTCTGGGAA+GGG - 15689:13625-13644 MS.gene36228:CDS 45.0%
GGAGGGAGAATAGATGGAAT+GGG - 15689:12893-12912 MS.gene36228:intron 45.0%
GGTGAGAATCAAAACATGGC+AGG - 15689:15070-15089 MS.gene36228:intron 45.0%
GTCAGTCCAATTGACATTGG+TGG - 15689:12609-12628 MS.gene36228:CDS 45.0%
GTTCAATTTCTCATCCCCGT+TGG + 15689:14485-14504 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG - 15689:14945-14964 MS.gene36228:CDS 45.0%
TAGATGGAATGGGACAGGAA+TGG - 15689:12903-12922 MS.gene36228:intron 45.0%
TCAAAACACAGGTATGGGAC+GGG + 15689:14903-14922 None:intergenic 45.0%
TCAGAAATTCTTCACGGGTC+TGG - 15689:14181-14200 MS.gene36228:intron 45.0%
TCAGGCCTTCTTGAAGGTTT+GGG - 15689:12524-12543 MS.gene36228:CDS 45.0%
TCGCATTCACTAGCTGTATG+CGG - 15689:13253-13272 MS.gene36228:intron 45.0%
TGGAGGGAGAATAGATGGAA+TGG - 15689:12892-12911 MS.gene36228:intron 45.0%
TTCAGGCCTTCTTGAAGGTT+TGG - 15689:12523-12542 MS.gene36228:CDS 45.0%
TTCCCAGACATTGCATATGC+GGG + 15689:13625-13644 None:intergenic 45.0%
TTGTTGCCATGCCTAGTTGA+TGG - 15689:15020-15039 MS.gene36228:intron 45.0%
TTTATACACGGGTATGGGAC+GGG + 15689:14816-14835 None:intergenic 45.0%
TTTCACCTTATGCCATGACC+TGG + 15689:14228-14247 None:intergenic 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG - 15689:14974-14993 MS.gene36228:CDS 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG - 15689:14975-14994 MS.gene36228:CDS 45.0%
! GGAGTTGATCTTGCAAGATC+TGG + 15689:12933-12952 None:intergenic 45.0%
! TTGATGGTAGGCATGGCAAT+GGG - 15689:14383-14402 MS.gene36228:intron 45.0%
!! AAATTGGGTTTGGTTCGGGT+GGG - 15689:14979-14998 MS.gene36228:CDS 45.0%
!!! CATTTTGGTGCCATAGGTGA+TGG - 15689:12130-12149 MS.gene36228:CDS 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG + 15689:14945-14964 None:intergenic 45.0%
AACCCGCCTGGATTTGGATT+TGG + 15689:12098-12117 None:intergenic 50.0%
ACCCAAACCCAGTCAAAACG+GGG - 15689:14946-14965 MS.gene36228:CDS 50.0%
ACGAGTTTGGGTATGGGTTC+GGG - 15689:14768-14787 MS.gene36228:intron 50.0%
ACGGGGAAAACCCGTCAAAT+TGG - 15689:14963-14982 MS.gene36228:CDS 50.0%
ACTGGGTTTGGGTATGGGTT+TGG + 15689:14939-14958 None:intergenic 50.0%
ATCCACCATGCACAACCACA+AGG - 15689:12022-12041 MS.gene36228:CDS 50.0%
ATGAGAATCGGGTATGGGGA+CGG + 15689:14436-14455 None:intergenic 50.0%
ATGGAATGGGACAGGAATGG+TGG - 15689:12906-12925 MS.gene36228:intron 50.0%
ATTCGGGACGAGTTTGGGTA+TGG - 15689:14761-14780 MS.gene36228:intron 50.0%
ATTTCCTGTGGTCCAGGTCA+TGG - 15689:14213-14232 MS.gene36228:intron 50.0%
CAAGTCCTTGTGGTTGTGCA+TGG + 15689:12030-12049 None:intergenic 50.0%
CACCTTTCTGTAGAAGGTGG+AGG - 15689:12875-12894 MS.gene36228:intron 50.0%
CAGGAAGACATGGCTGCAAA+AGG + 15689:13045-13064 None:intergenic 50.0%
CGCATATGCAATGTCTGGGA+AGG - 15689:13624-13643 MS.gene36228:CDS 50.0%
CGCATTCACTAGCTGTATGC+GGG - 15689:13254-13273 MS.gene36228:intron 50.0%
CGGGGAAAACCCGTCAAATT+GGG - 15689:14964-14983 MS.gene36228:CDS 50.0%
CTACTTGTCGAAAAGCAGGC+AGG + 15689:15783-15802 None:intergenic 50.0%
CTCCCGCATATGCAATGTCT+GGG - 15689:13620-13639 MS.gene36228:CDS 50.0%
CTGGGTTTGGGTATGGGTTT+GGG + 15689:14938-14957 None:intergenic 50.0%
GAAGACTCCCCCTACTTTGT+AGG - 15689:13761-13780 MS.gene36228:intron 50.0%
GAAGGTGGAGGGAGAATAGA+TGG - 15689:12887-12906 MS.gene36228:intron 50.0%
GACGAGTTTGGGTATGGGTT+CGG - 15689:14767-14786 MS.gene36228:intron 50.0%
GATTCCATCGGTATTAGGGC+TGG + 15689:13316-13335 None:intergenic 50.0%
GCAGACTTCAGCTGTTCAAG+TGG - 15689:15569-15588 MS.gene36228:intron 50.0%
GGCAACAAAACCCATACCCA+TGG + 15689:15008-15027 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG - 15689:14466-14485 MS.gene36228:CDS 50.0%
GTTGGGTATGGGTAGGGTAA+CGG + 15689:14467-14486 None:intergenic 50.0%
TCCCTCCACCTTCTACAGAA+AGG + 15689:12880-12899 None:intergenic 50.0%
TCTGCATTCGGGACGAGTTT+GGG - 15689:14756-14775 MS.gene36228:intron 50.0%
TGATGGTAGGCATGGCAATG+GGG - 15689:14384-14403 MS.gene36228:intron 50.0%
TGTAAGGGAGATAGGGGGAA+AGG - 15689:13921-13940 MS.gene36228:intron 50.0%
TGTGCTCCATCAACTAGGCA+TGG + 15689:15029-15048 None:intergenic 50.0%
TTACCCTACCCATACCCAAC+GGG - 15689:14467-14486 MS.gene36228:CDS 50.0%
TTCGGGACGAGTTTGGGTAT+GGG - 15689:14762-14781 MS.gene36228:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG + 15689:14478-14497 None:intergenic 50.0%
TTCTGCATTCGGGACGAGTT+TGG - 15689:14755-14774 MS.gene36228:intron 50.0%
TTGGGTATGGGTAGGGTAAC+GGG + 15689:14466-14485 None:intergenic 50.0%
TTGTCGAAAAGCAGGCAGGA+GGG + 15689:15779-15798 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG + 15689:14479-14498 None:intergenic 50.0%
! CAAGCTCATGGTTCTGCTCA+AGG - 15689:15744-15763 MS.gene36228:CDS 50.0%
! TGCGGGAGCTTTAGTGCATT+AGG + 15689:13608-13627 None:intergenic 50.0%
! TTTGAAGCGCCACTAACCGT+TGG + 15689:13070-13089 None:intergenic 50.0%
!! ACATGGAGAAGCATCACTGC+AGG + 15689:15655-15674 None:intergenic 50.0%
!! CAAATTGGGTTTGGTTCGGG+TGG - 15689:14978-14997 MS.gene36228:CDS 50.0%
!! GTTGATGGTAGGCATGGCAA+TGG - 15689:14382-14401 MS.gene36228:intron 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG + 15689:14956-14975 None:intergenic 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG + 15689:14950-14969 None:intergenic 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG + 15689:14951-14970 None:intergenic 50.0%
ACAGGTATGGGACGGGTAAC+GGG + 15689:14896-14915 None:intergenic 55.0%
ACCGTTGGAGCAGGAAGACA+TGG + 15689:13055-13074 None:intergenic 55.0%
ATACCCGAACCCATTGGGGA+CGG + 15689:14515-14534 None:intergenic 55.0%
ATCCCCGTTGGGTATGGGTA+GGG + 15689:14473-14492 None:intergenic 55.0%
CACAGGTATGGGACGGGTAA+CGG + 15689:14897-14916 None:intergenic 55.0%
CAGAAAGGTGATTCACCCCG+TGG + 15689:12865-12884 None:intergenic 55.0%
CGAGTTTGGGTATGGGTTCG+GGG - 15689:14769-14788 MS.gene36228:intron 55.0%
CTTCCTGCTCCAACGGTTAG+TGG - 15689:13058-13077 MS.gene36228:intron 55.0%
CTTGTCGAAAAGCAGGCAGG+AGG + 15689:15780-15799 None:intergenic 55.0%
GCCATGTCTTCCTGCTCCAA+CGG - 15689:13051-13070 MS.gene36228:intron 55.0%
GCTCCCGCATATGCAATGTC+TGG - 15689:13619-13638 MS.gene36228:CDS 55.0%
GGAAAGAACCCGCCTGGATT+TGG + 15689:12104-12123 None:intergenic 55.0%
GGGTGGGTAACCATGGGTAT+GGG - 15689:14995-15014 MS.gene36228:CDS 55.0%
GTCCTTGTGGTTGTGCATGG+TGG + 15689:12027-12046 None:intergenic 55.0%
GTGGTCCAGGTCATGGCATA+AGG - 15689:14220-14239 MS.gene36228:intron 55.0%
TACCCTACCCATACCCAACG+GGG - 15689:14468-14487 MS.gene36228:CDS 55.0%
TATGCCATGACCTGGACCAC+AGG + 15689:14220-14239 None:intergenic 55.0%
TCCATCGGTATTAGGGCTGG+AGG + 15689:13313-13332 None:intergenic 55.0%
TGAGAATCGGGTATGGGGAC+GGG + 15689:14435-14454 None:intergenic 55.0%
TTTGGGTATGGGTTCGGGGT+GGG - 15689:14773-14792 MS.gene36228:intron 55.0%
! AGTGATGGAAAGAACCCGCC+TGG + 15689:12110-12129 None:intergenic 55.0%
! TGGTTCGGGTGGGTAACCAT+GGG - 15689:14989-15008 MS.gene36228:CDS 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG + 15689:14957-14976 None:intergenic 55.0%
!! GGGACGGGTAACGGGTATAT+AGG + 15689:14801-14820 None:intergenic 55.0%
!! TTCGGGTTGACCCAGAACGT+GGG + 15689:12069-12088 None:intergenic 55.0%
!! TTGGTTCGGGTGGGTAACCA+TGG - 15689:14988-15007 MS.gene36228:CDS 55.0%
AACCCATTGGGGACGGGGAT+GGG + 15689:14508-14527 None:intergenic 60.0%
ACGGGTATGGGACGGGTAAC+GGG + 15689:14809-14828 None:intergenic 60.0%
ATTCAATGCGGGGACGGGGA+TGG + 15689:14545-14564 None:intergenic 60.0%
CACCACGAGACCCTGACGTA+TGG - 15689:12807-12826 MS.gene36228:intron 60.0%
CACGGGTATGGGACGGGTAA+CGG + 15689:14810-14829 None:intergenic 60.0%
CATCCCCGTTGGGTATGGGT+AGG + 15689:14474-14493 None:intergenic 60.0%
CGAGACCCTGACGTATGGCA+TGG - 15689:12812-12831 MS.gene36228:intron 60.0%
CGGGGATACCCGAACCCATT+GGG + 15689:14520-14539 None:intergenic 60.0%
CGGGTGGGTAACCATGGGTA+TGG - 15689:14994-15013 MS.gene36228:CDS 60.0%
GAGAATCGGGTATGGGGACG+GGG + 15689:14434-14453 None:intergenic 60.0%
GCCTCCAGCCCTAATACCGA+TGG - 15689:13309-13328 MS.gene36228:intron 60.0%
GGGGATACCCGAACCCATTG+GGG + 15689:14519-14538 None:intergenic 60.0%
GGTAGGCATGGCAATGGGGT+GGG - 15689:14388-14407 MS.gene36228:intron 60.0%
GTAGGCATGGCAATGGGGTG+GGG - 15689:14389-14408 MS.gene36228:intron 60.0%
GTTTGGGTATGGGTTCGGGG+TGG - 15689:14772-14791 MS.gene36228:intron 60.0%
TACCCGAACCCATTGGGGAC+GGG + 15689:14514-14533 None:intergenic 60.0%
TCGGTATTAGGGCTGGAGGC+AGG + 15689:13309-13328 None:intergenic 60.0%
TGCCATACGTCAGGGTCTCG+TGG + 15689:12812-12831 None:intergenic 60.0%
TGGGAAGGGGTCCCACCATT+TGG - 15689:13639-13658 MS.gene36228:intron 60.0%
TGGTAGGCATGGCAATGGGG+TGG - 15689:14387-14406 MS.gene36228:intron 60.0%
TTCAATGCGGGGACGGGGAT+GGG + 15689:14544-14563 None:intergenic 60.0%
! ATCCCCGTCCCCAATGGGTT+CGG - 15689:14508-14527 MS.gene36228:CDS 60.0%
!! GTTCGGGTTGACCCAGAACG+TGG + 15689:12070-12089 None:intergenic 60.0%
AACCCCATCCCCGTCCCCAA+TGG - 15689:14502-14521 MS.gene36228:CDS 65.0%
ACCCATTGGGGACGGGGATG+GGG + 15689:14507-14526 None:intergenic 65.0%
ACCCCATCCCCGTCCCCAAT+GGG - 15689:14503-14522 MS.gene36228:CDS 65.0%
ACCCGAACCCATTGGGGACG+GGG + 15689:14513-14532 None:intergenic 65.0%
CATGGCAATGGGGTGGGGTG+GGG - 15689:14394-14413 MS.gene36228:intron 65.0%
GAACCCATTGGGGACGGGGA+TGG + 15689:14509-14528 None:intergenic 65.0%
GCATGGCAATGGGGTGGGGT+GGG - 15689:14393-14412 MS.gene36228:intron 65.0%
GCGCCACTAACCGTTGGAGC+AGG + 15689:13064-13083 None:intergenic 65.0%
GCGGGGATACCCGAACCCAT+TGG + 15689:14521-14540 None:intergenic 65.0%
TCAATGCGGGGACGGGGATG+GGG + 15689:14543-14562 None:intergenic 65.0%
! TCCCCGTCCCCAATGGGTTC+GGG - 15689:14509-14528 MS.gene36228:CDS 65.0%
CAATGGGGTGGGGTGGGGAC+GGG - 15689:14399-14418 MS.gene36228:intron 70.0%
GCAATGGGGTGGGGTGGGGA+CGG - 15689:14398-14417 MS.gene36228:intron 70.0%
GGCATGGCAATGGGGTGGGG+TGG - 15689:14392-14411 MS.gene36228:intron 70.0%
ATGCGGGGACGGGGATGGGG+CGG + 15689:14540-14559 None:intergenic 75.0%
! TGCGGGGACGGGGATGGGGC+GGG + 15689:14539-14558 None:intergenic 80.0%
! GCGGGGACGGGGATGGGGCG+GGG + 15689:14538-14557 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
15689 gene 11953 15860 11953 ID=MS.gene36228
15689 mRNA 11953 15860 11953 ID=MS.gene36228.t1;Parent=MS.gene36228
15689 exon 15642 15860 15642 ID=MS.gene36228.t1.exon1;Parent=MS.gene36228.t1
15689 CDS 15642 15860 15642 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 15154 15285 15154 ID=MS.gene36228.t1.exon2;Parent=MS.gene36228.t1
15689 CDS 15154 15285 15154 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 14855 15025 14855 ID=MS.gene36228.t1.exon3;Parent=MS.gene36228.t1
15689 CDS 14855 15025 14855 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 14741 14761 14741 ID=MS.gene36228.t1.exon4;Parent=MS.gene36228.t1
15689 CDS 14741 14761 14741 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 14426 14633 14426 ID=MS.gene36228.t1.exon5;Parent=MS.gene36228.t1
15689 CDS 14426 14633 14426 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 13572 13653 13572 ID=MS.gene36228.t1.exon6;Parent=MS.gene36228.t1
15689 CDS 13572 13653 13572 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 13425 13483 13425 ID=MS.gene36228.t1.exon7;Parent=MS.gene36228.t1
15689 CDS 13425 13483 13425 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 12722 12768 12722 ID=MS.gene36228.t1.exon8;Parent=MS.gene36228.t1
15689 CDS 12722 12768 12722 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 12515 12631 12515 ID=MS.gene36228.t1.exon9;Parent=MS.gene36228.t1
15689 CDS 12515 12631 12515 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
15689 exon 11953 12240 11953 ID=MS.gene36228.t1.exon10;Parent=MS.gene36228.t1
15689 CDS 11953 12240 11953 ID=cds.MS.gene36228.t1;Parent=MS.gene36228.t1
Gene Sequence

>MS.gene36228

ATGAGATCTTCTTCTTCCATTTCTATATATATCATTGTTATTATCTCCATTGTACTTGTTCCTTTATTCATCCACCATGCACAACCACAAGGACTTGACTCTATTATCAAACTCCCACGTTCTGGGTCAACCCGAACCAGATCCAAATCCAAATCCAGGCGGGTTCTTTCCATCACTCATTTTGGTGCCATAGGTGATGGTTTTCATAATGACACTCAGGTATTAATTATGATACTGTTTTCCCTTGAATTTGGACTTTTGATGTTGTTGTTGGTACATTTTTGTTAATGATTTTTATCATGTACAAAATGTAATTGTTGTTCATTCACAAATGCATCATAGTGAAATGTAAATGATATTCATTCATAGTCCACAAGGATGTTTTTGCAAGTTGGGTGTTTCTTTTTAAAATGTGAGCATAATAGAGAATTTTGATTTATAGCCACTGAATGTTAGGTGATTTGTCTCATTGAGCTAGATATAGGATAAGTAAATTTTAGAATCTTCATCAATGATACTTTGTTACCATGATATACTGATAAACAGGTTATTAATTTTTTTATCTATCTTTTCAGGCCTTCTTGAAGGTTTGGGAAATTGCTTGTTCTCTCTCTGGATTCATCAATATTGTTTTTCCATATGAAAAAACTTTTCTTGTCAGTCCAATTGACATTGGTGGACCTTGTCGATCTAAGATCACTTTGAGGGTAAGCACTAAGAGTGTATGAAATCTACCAGATTTTAAACAGATTTCTCTCATATGCATCTTTCAATTCTTGAATGAAATGTGTCGTATTGAAAATGTTTATTATTATTATTATTATTTATTTTATAGATCTTAGGAACAATAGTTGCACCACGAGACCCTGACGTATGGCATGGTTTAAATAAGCGCAAATGGATTTACTTCCACGGGGTGAATCACCTTTCTGTAGAAGGTGGAGGGAGAATAGATGGAATGGGACAGGAATGGTGGTCCAGATCTTGCAAGATCAACTCCACTAATGTATTGCTATCTCAGAAACTTATTTTCATATGTAGTTGAAGTTTATTCATCAGTTTAACTAAGTGATGATGACTTCAAAATCTCCTTTTGCAGCCATGTCTTCCTGCTCCAACGGTTAGTGGCGCTTCAAAATATGGAGCAAAACAGTTCATTTCTCTAATCTGATGATACATTAATTATGAATCTATTAGCTGAAATATGAAACTTCATTTACTATGTAGGCCTTGACTTTTCATAAATGCAAGAGTCTGAAAGTCAGAAACCTTATGGTGCTAAATAGCCAAAAAATGCACATCGCATTCACTAGCTGTATGCGGGTTGTTGCATCACGTCTCAAAGTATTAGCACCTGCCTCCAGCCCTAATACCGATGGAATCCACATTAGTGCTACAAAAGGTGTTGAGATTAAAGATAGTGTAATTAGAACAGGTGTGTTATCCTCAATCTAATGCAATGCTAGTGTTACTCATATTGGAAGATTTCAGTGATAGTTTAACATCTTATTTATTTTAAATAGTAATAACATGTTGGTGTTTTAACAGTCAATCATATTTCAGAAATCATAGAAACTTGTTTTTAGTAAAATATAGGATAAGCAGAAAGAAACTATCGTAACAATGAATAAACTTTGTAGGCATAAGGGCAGCCTAATGCACTAAAGCTCCCGCATATGCAATGTCTGGGAAGGGGTCCCACCATTTGGTGTATTGTATGCAGCCTTACCTTGTTTTTTACACAAGGGATTGTTTTGAAGACTTGAACGCGTGACCTTTCAGTCACGTGATAACAATTTTACTGTTGCGAAGACTCCCCCTACTTTGTAGGCATCTTATAAGTTTTTAAGTTTTATGATTATCATTATTATTTTTGAATGTATGGAACTAGCTGAATATGATATGCATGTCATTCCCTATATGATATTTTCAGTTGTGTAGCTTTTAAACTTTGGAAATGTTTAATGTTGTAAGGGAGATAGGGGGAAAGGCATGTGCAACCAACCTGAACAATAAACCAACAATAATGTAACATTGAAACACCATAAAAATGTGTAAATCATTTATAAGGTCAGAGAAATGTGTAACCTTGAAACACCATAGAAATGACTACTTTCATTACCGTTTTGTAGAAGTTCCAGAATAAACTTAATGATCAAGTAATGTGTCAGAAGACAAACATTTCACTGCATTATGTCCCATTTCAGGTGATGACTGCATCTCCATAGTCAGAAATTCTTCACGGGTCTGGATCCGAAATATTTCCTGTGGTCCAGGTCATGGCATAAGGTGAAAGTAATGTTCACTTTTAGTTCATTAGGATACCAAGTAGTATAAATTGTATAATTCTTAACCGATACTTGAACCTATTTTTCAGCATTGGTAGCTTAGGAAAATCAAACGTATGGGAGAAGATTCAAAATGTAATTGTTGATGGTAGGCATGGCAATGGGGTGGGGTGGGGACGGGTTTTACATTCCCCGTCCCCATACCCGATTCTCATATACTTACCCGTTACCCTACCCATACCCAACGGGGATGAGAAATTGAACCCCATCCCCGTCCCCAATGGGTTCGGGTATCCCCGCCCCATCCCCGTCCCCGCATTGAATATTTCTTTAAATAAAACATAGAAGTTTTTTGCAACCCCTAGAGAAATATCGTAATACATTATCCATCAATATGCTCACTTTAACATTTGTTAGATCGATTGATTTAGTTGCTCCTTTAAATATCAATGGTAGTTTTTATAACACGACAATTATTAAACAAAATAACATGATATATCAACATAAAGTACTTTTCTGCATTCGGGACGAGTTTGGGTATGGGTTCGGGGTGGGTACCTATATACCCGTTACCCGTCCCATACCCGTGTATAAAGTACTTTTCTGCATTCGGGACGAGTTTGGGTATGGGTTCGGGGTGGGTACCTATATACCCGTTACCCGTCCCATACCTGTGTTTTGAAATCGGGGAAAACCCAAACCCATACCCAAACCCAGTCAAAACGGGGAAAACCCGTCAAATTGGGTTTGGTTCGGGTGGGTAACCATGGGTATGGGTTTTGTTGCCATGCCTAGTTGATGGAGCACATCTATACAACACTGATAATGGGGTGAGAATCAAAACATGGCAGGTAACTTTCTTCGTAACTGTATCATTTTCATTCTCATTATATATTTCACCTAGTGATGACAAGTCTATTGAGTCGAGCCAAATTTTAAAGGGTGGGAGTGGTTTTGCCTCCAAGATCACATTCCAGAATATCTTAATGGAAAATGTGTCCAATCCAATAATAATAGATCAATACTACTGCGATTCACGACATCCATGCAAGAATCAGGTATTGAATTTTAAGATATTTTTGCTGGATTTTTTTGTATGTCTGCATGTTCATGTACTGACACTATTAATAGTCAGACAGTGATTTTTTTGAGAGGATAGCCTATATAGTTTTGAATGATTTGTAGAATGTAATAGCTGATTTCACAATTTCCATCGATTATAATCATGTCAGTGACACACATTCCTGTCAATCTCCAACAAGGATTCAAATTAATGAAGTTTCATAATAATTTAATTCAACTGAAGATATTATGCTGTAAAAATTTATGCAGACTTCAGCTGTTCAAGTGGGAAACATATCCTTCATTAATATTCTAGGAACTTCAGCCACCGAAGAAACCATTAAATTTGCCTGCAGTGATGCTTCTCCATGTGAAGGACTATATCTGGAAAATATTTTTCTTCAATCATACTTTGGAGGAAATACAAGATCTTATTGTTGGCAAGCTCATGGTTCTGCTCAAGGTTATGTGTACCCTCCTGCCTGCTTTTCGACAAGTAGTGATTTAATTAGACAAAATGTCTTGTTAGAGCCAAATCCTGCTATTAATTCTGTCTGA
Protein sequence

>MS.gene36228.t1

MRSSSSISIYIIVIISIVLVPLFIHHAQPQGLDSIIKLPRSGSTRTRSKSKSRRVLSITHFGAIGDGFHNDTQAFLKVWEIACSLSGFINIVFPYEKTFLVSPIDIGGPCRSKITLRILGTIVAPRDPDVWHGLNKRKWIYFHGVNHLSVEGGGRIDGMGQEWWSRSCKINSTNPCLPAPTALTFHKCKSLKVRNLMVLNSQKMHIAFTSCMRVVASRLKVLAPASSPNTDGIHISATKGVEIKDSVIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGSLGKSNVWEKIQNVIVDAHLYNTDNGVRIKTWQGGSGFASKITFQNILMENVSNPIIIDQYYCDSRHPCKNQTSAVQVGNISFINILGTSATEETIKFACSDASPCEGLYLENIFLQSYFGGNTRSYCWQAHGSAQGYVYPPACFSTSSDLIRQNVLLEPNPAINSV