AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61080.t1 MTR_8g039560 97.640 339 8 0 1 339 1 339 0.0 665
MS.gene61080.t1 MTR_2g018010 32.441 299 186 7 1 297 389 673 5.56e-29 118
MS.gene61080.t1 MTR_5g083030 31.333 300 187 8 2 297 399 683 1.02e-27 114
MS.gene61080.t1 MTR_4g485520 31.488 289 180 9 7 294 372 643 6.32e-25 105
MS.gene61080.t1 MTR_4g485520 31.488 289 180 9 7 294 204 475 9.08e-25 104
MS.gene61080.t1 MTR_1g094215 31.683 303 186 12 2 300 156 441 5.42e-24 102
MS.gene61080.t1 MTR_1g094215 31.683 303 186 12 2 300 339 624 2.07e-23 101
MS.gene61080.t1 MTR_4g063800 30.312 320 200 12 3 318 348 648 5.53e-23 100
MS.gene61080.t1 MTR_7g078330 28.125 288 189 8 4 290 363 633 1.85e-21 95.9
MS.gene61080.t1 MTR_7g059405 29.655 290 182 11 10 297 363 632 6.34e-20 91.3
MS.gene61080.t1 MTR_3g466220 33.755 237 142 7 8 243 532 754 7.92e-20 90.9
MS.gene61080.t1 MTR_3g466220 33.755 237 142 7 8 243 553 775 8.08e-20 90.9
MS.gene61080.t1 MTR_7g097020 31.837 245 152 7 8 251 482 712 2.54e-17 83.6
MS.gene61080.t1 MTR_4g028960 32.372 312 175 14 1 297 373 663 3.85e-17 82.8
MS.gene61080.t1 MTR_1g069845 27.431 288 190 8 8 294 323 592 2.50e-16 80.5
MS.gene61080.t1 MTR_1g069845 27.431 288 190 8 8 294 440 709 3.18e-16 80.1
MS.gene61080.t1 MTR_1g069845 27.431 288 190 8 8 294 444 713 3.83e-16 79.7
MS.gene61080.t1 MTR_3g078160 28.522 291 191 9 10 297 380 656 5.81e-16 79.3
MS.gene61080.t1 MTR_3g078160 28.522 291 191 9 10 297 380 656 6.72e-16 79.0
MS.gene61080.t1 MTR_2g011140 29.492 295 180 11 9 297 106 378 3.17e-14 73.2
MS.gene61080.t1 MTR_2g026130 28.179 291 191 8 8 297 175 448 3.84e-14 73.6
MS.gene61080.t1 MTR_4g107010 27.458 295 189 9 11 297 386 663 8.91e-14 72.8
MS.gene61080.t1 MTR_1g018180 27.740 292 191 10 8 297 61 334 1.73e-12 67.8
MS.gene61080.t1 MTR_3g078340 26.644 289 195 7 10 297 213 485 5.18e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61080.t1 AT1G08315 59.871 309 114 3 3 302 4 311 3.39e-123 357
MS.gene61080.t1 AT2G23140 33.333 288 173 8 8 294 354 623 1.69e-28 116
MS.gene61080.t1 AT2G23140 33.333 288 173 8 8 294 354 623 1.69e-28 116
MS.gene61080.t1 AT2G23140 33.681 288 172 8 8 294 546 815 3.19e-28 115
MS.gene61080.t1 AT2G23140 33.681 288 172 8 8 294 543 812 3.21e-28 115
MS.gene61080.t1 AT2G23140 33.681 288 172 8 8 294 543 812 3.21e-28 115
MS.gene61080.t1 AT1G23030 31.864 295 176 9 8 297 333 607 7.97e-27 111
MS.gene61080.t1 AT1G29340 31.138 334 205 9 1 326 401 717 9.45e-26 108
MS.gene61080.t1 AT5G67340 30.584 291 184 8 8 297 423 696 4.44e-22 97.8
MS.gene61080.t1 AT5G67340 30.584 291 184 8 8 297 423 696 4.44e-22 97.8
MS.gene61080.t1 AT1G71020 30.293 307 188 10 7 307 194 480 1.48e-21 95.5
MS.gene61080.t1 AT1G71020 30.293 307 188 10 7 307 342 628 2.26e-21 95.5
MS.gene61080.t1 AT3G54850 30.872 298 186 10 2 297 341 620 1.38e-19 90.1
MS.gene61080.t1 AT3G46510 29.900 301 175 11 12 294 342 624 3.67e-19 89.0
MS.gene61080.t1 AT2G28830 28.716 296 191 10 2 294 279 557 8.36e-19 87.8
MS.gene61080.t1 AT3G54790 29.825 285 182 7 11 294 477 744 4.48e-18 85.9
MS.gene61080.t1 AT3G54790 29.825 285 182 7 11 294 477 744 4.48e-18 85.9
MS.gene61080.t1 AT3G54790 29.825 285 182 7 11 294 441 708 5.36e-18 85.5
MS.gene61080.t1 AT5G42340 28.956 297 193 9 2 297 375 654 3.39e-16 80.1
MS.gene61080.t1 AT5G01830 31.295 278 162 9 27 297 388 643 5.32e-16 79.3
MS.gene61080.t1 AT5G65200 28.698 338 190 14 11 320 229 543 4.38e-15 76.6
MS.gene61080.t1 AT3G01400 30.169 295 180 13 8 295 64 339 1.62e-13 71.2
MS.gene61080.t1 AT1G60190 25.574 305 206 11 2 297 370 662 1.33e-12 69.3
MS.gene61080.t1 AT1G10560 26.159 302 203 10 3 297 385 673 4.50e-12 67.4
MS.gene61080.t1 AT5G62560 26.690 281 177 12 25 297 253 512 9.04e-11 63.5

Find 87 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGCGTTTAAGAAGGTTTC+TGG 0.219872 8.2:-60572686 MS.gene61080:CDS
TGCGCCTGATTCGGCTATTA+TGG 0.221489 8.2:+60573710 None:intergenic
AAGGATAAAGGAAGTGTTAA+AGG 0.256345 8.2:-60572494 MS.gene61080:CDS
GGCTATTATGGGTCGGGTTG+AGG 0.297936 8.2:+60573722 None:intergenic
AAGGGTGTAAAGATGAATAA+AGG 0.319486 8.2:+60573667 None:intergenic
CTCGATGAGTGATTCGATTC+GGG 0.324566 8.2:+60573770 None:intergenic
GCGCCTGATTCGGCTATTAT+GGG 0.332670 8.2:+60573711 None:intergenic
ATTGCTGATGTTAAGGATAA+AGG 0.334033 8.2:-60572506 MS.gene61080:CDS
TTTCGTCGGTGGATGATTAT+CGG 0.349847 8.2:-60573476 MS.gene61080:CDS
TTGAATAGTGATTCGTCGTT+TGG 0.355196 8.2:-60572368 MS.gene61080:CDS
AACGAATCCTTCACCGTCCT+TGG 0.377992 8.2:+60573381 None:intergenic
GGTTCAGTTTGGTGTTGTTC+CGG 0.382972 8.2:-60573310 MS.gene61080:CDS
CGCGGTGGCGTTTGGTGCGT+TGG 0.390519 8.2:-60572534 MS.gene61080:CDS
GTAAGGAATTGCGCCTGATT+CGG 0.391749 8.2:+60573701 None:intergenic
GCTATTATGGGTCGGGTTGA+GGG 0.392612 8.2:+60573723 None:intergenic
GGATTGAACAGCGGCGGCGG+CGG 0.408949 8.2:+60573524 None:intergenic
GGCGGATTGAACAGCGGCGG+CGG 0.409584 8.2:+60573521 None:intergenic
TTTAAGAAGGTTTCTGGTGT+TGG 0.413108 8.2:-60572680 MS.gene61080:CDS
GCTCGATGAGTGATTCGATT+CGG 0.440076 8.2:+60573769 None:intergenic
ACACCGCGCGTGGACATGAT+AGG 0.441940 8.2:+60573591 None:intergenic
AATCATCCACCGACGAAAGA+AGG 0.447664 8.2:+60573481 None:intergenic
GTAAGAGACGCGGTGGCGTT+TGG 0.449671 8.2:-60572542 MS.gene61080:CDS
CGACCCATAATAGCCGAATC+AGG 0.450618 8.2:-60573714 MS.gene61080:CDS
GGTTTCTGGTGTTGGAGTGC+TGG 0.453944 8.2:-60572672 MS.gene61080:CDS
GATGATTATCGGACTGTTGT+TGG 0.454158 8.2:-60573465 MS.gene61080:CDS
AAGTGTTGAGGCGTTTAAGA+AGG 0.460925 8.2:-60572693 MS.gene61080:CDS
CTCAACACTTTCCTCGCAAC+CGG 0.466572 8.2:+60572706 None:intergenic
TTACTACTGGTTCGAGTATG+AGG 0.466784 8.2:-60572634 MS.gene61080:CDS
TTGAACAGCGGCGGCGGCGG+AGG 0.468848 8.2:+60573527 None:intergenic
ATTGTTAATGATGGTAGAGT+AGG 0.470952 8.2:-60573273 MS.gene61080:CDS
GTGGCGTTTGGTGCGTTGGA+TGG 0.471560 8.2:-60572530 MS.gene61080:CDS
TGATTCGGCTATTATGGGTC+GGG 0.485936 8.2:+60573716 None:intergenic
GGATGGAATTGCTGATGTTA+AGG 0.490466 8.2:-60572513 MS.gene61080:CDS
CTGATTCGGCTATTATGGGT+CGG 0.492707 8.2:+60573715 None:intergenic
TTGTTAATGATGGTAGAGTA+GGG 0.494346 8.2:-60573272 MS.gene61080:CDS
AGGATAAAGGAAGTGTTAAA+GGG 0.495009 8.2:-60572493 MS.gene61080:CDS
CACGGTGATGTTCGTAGTCA+TGG 0.500956 8.2:-60572419 MS.gene61080:CDS
TCTTTCATGAATGAAGATAG+TGG 0.502373 8.2:-60572344 MS.gene61080:CDS
TGCTTCCGCGGTTATTGCGC+AGG 0.502926 8.2:-60573238 MS.gene61080:intron
CGTGCTACGATGGTTCAGTT+TGG 0.503525 8.2:-60573321 MS.gene61080:CDS
AAGTGTTAAAGGGCAGAGTA+AGG 0.512764 8.2:-60572483 MS.gene61080:CDS
GACGGTGAAGGATTCGTTGA+AGG 0.512960 8.2:-60573376 MS.gene61080:CDS
AGGGTGTAAAGATGAATAAA+GGG 0.516148 8.2:+60573668 None:intergenic
CTGGTTCGAGTATGAGGACG+AGG 0.521816 8.2:-60572628 MS.gene61080:CDS
GATATAGGTCGCCGGTTGCG+AGG 0.533682 8.2:-60572717 MS.gene61080:intron
ACCATCGTAGCACGGTTCAA+CGG 0.536054 8.2:+60573330 None:intergenic
TCCGTTGAACCGTGCTACGA+TGG 0.538334 8.2:-60573331 MS.gene61080:CDS
TCACAGCCTTCTTTCGTCGG+TGG 0.538956 8.2:-60573487 MS.gene61080:CDS
TAAAGGGTTTCAGCGAGGTA+AGG 0.539730 8.2:+60573684 None:intergenic
GAATCCTTCACCGTCCTTGG+CGG 0.540119 8.2:+60573384 None:intergenic
GTTCGTAGTCATGGTGATGT+TGG 0.543807 8.2:-60572392 MS.gene61080:CDS
GATTCACAGCCTTCTTTCGT+CGG 0.551912 8.2:-60573490 MS.gene61080:CDS
GACGAGGGAAAATGCAGTGT+CGG 0.556430 8.2:-60572612 MS.gene61080:CDS
CGCGTCGAGAACACCGCGCG+TGG 0.558608 8.2:+60573581 None:intergenic
GATCTACTCGATCTTACTAC+TGG 0.562670 8.2:-60572647 MS.gene61080:CDS
CCGTCCTTGGCGGTGAAGAA+CGG 0.564287 8.2:+60573394 None:intergenic
CTTAATCTTGTGAGATGTGG+TGG 0.564928 8.2:-60572584 MS.gene61080:CDS
TTGCTTAATCTTGTGAGATG+TGG 0.567457 8.2:-60572587 MS.gene61080:CDS
CATGGTGATGTTCGTAGTCA+TGG 0.571710 8.2:-60572401 MS.gene61080:CDS
TGTGGTGGAGATGTGGTCGC+TGG 0.575263 8.2:-60572569 MS.gene61080:CDS
TTCACCGCCAAGGACGGTGA+AGG 0.576560 8.2:-60573388 MS.gene61080:CDS
GCTGTGAATCGTAGCGGCGG+CGG 0.577574 8.2:+60573503 None:intergenic
GTCACCGTTCTTCACCGCCA+AGG 0.589598 8.2:-60573398 MS.gene61080:CDS
CTAGCGTCCGCACCGCGCGG+CGG 0.594313 8.2:+60573823 None:intergenic
ACGCAAACCGCCGCGCGGTG+CGG 0.595256 8.2:-60573830 MS.gene61080:CDS
GAGTTGATGAGAGTGATGGT+TGG 0.595956 8.2:-60572455 MS.gene61080:CDS
GGCGGCGGATTGAACAGCGG+CGG 0.598501 8.2:+60573518 None:intergenic
GTTGGTGATGTTCGTAGTCA+CGG 0.603776 8.2:-60572437 MS.gene61080:CDS
TTCTGGTGTTGGAGTGCTGG+CGG 0.604498 8.2:-60572669 MS.gene61080:CDS
CCGTTCTTCACCGCCAAGGA+CGG 0.608476 8.2:-60573394 MS.gene61080:CDS
ACATCTCTGATATAGGTCGC+CGG 0.608552 8.2:-60572725 MS.gene61080:intron
CGCTGGAGATGTAAGAGACG+CGG 0.633504 8.2:-60572552 MS.gene61080:CDS
CGGTTGCGAGGAAAGTGTTG+AGG 0.634053 8.2:-60572705 MS.gene61080:CDS
GATTGTTGAAGATGCTTCCG+CGG 0.638020 8.2:-60573250 MS.gene61080:CDS
TGTGAGATGTGGTGGAGATG+TGG 0.640840 8.2:-60572576 MS.gene61080:CDS
AATAACCTGCGCAATAACCG+CGG 0.661300 8.2:+60573233 None:intergenic
AAGGCTGTGAATCGTAGCGG+CGG 0.667512 8.2:+60573500 None:intergenic
AGCGGCGGCGGATTGAACAG+CGG 0.667946 8.2:+60573515 None:intergenic
CAAACTGAACCATCGTAGCA+CGG 0.670159 8.2:+60573322 None:intergenic
AATGGACGCAAACCGCCGCG+CGG 0.672166 8.2:-60573835 MS.gene61080:CDS
ATACTAGCGTCCGCACCGCG+CGG 0.672467 8.2:+60573820 None:intergenic
TGGAGATGTAAGAGACGCGG+TGG 0.677373 8.2:-60572549 MS.gene61080:CDS
ACAATCAACGAAAACAACGC+CGG 0.685893 8.2:+60573291 None:intergenic
ATGAATAAAGGGTTTCAGCG+AGG 0.686647 8.2:+60573679 None:intergenic
GAACCTATCATGTCCACGCG+CGG 0.689698 8.2:-60573594 MS.gene61080:CDS
AAGAAGGCTGTGAATCGTAG+CGG 0.707499 8.2:+60573497 None:intergenic
TGGTTCGAGTATGAGGACGA+GGG 0.725606 8.2:-60572627 MS.gene61080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAGAAATTGAATTAAATTA+AGG - chr8.2:60573015-60573034 MS.gene61080:intron 15.0%
!! CATTCATAAGCTAAAAAATA+AGG + chr8.2:60573054-60573073 None:intergenic 20.0%
! AAGTAATATAATACGATAGC+CGG - chr8.2:60573368-60573387 MS.gene61080:CDS 25.0%
! GCTATCGTATTATATTACTT+AGG + chr8.2:60573368-60573387 None:intergenic 25.0%
! TTATATTACTTAGGTCTGTT+TGG + chr8.2:60573359-60573378 None:intergenic 25.0%
! TTTAGTGCAATCATATTTGT+CGG - chr8.2:60573202-60573221 MS.gene61080:intron 25.0%
!! AACTTTTACATCTCTGATAT+AGG - chr8.2:60573433-60573452 MS.gene61080:CDS 25.0%
!! TGATTTTCTCAGATTATTAG+CGG + chr8.2:60573177-60573196 None:intergenic 25.0%
!!! TTTTCGTTGATTGTTAATGA+TGG - chr8.2:60572883-60572902 MS.gene61080:intron 25.0%
AAAGAGTTAGTTGTTCTAAC+CGG + chr8.2:60573390-60573409 None:intergenic 30.0%
AGGGTGTAAAGATGAATAAA+GGG + chr8.2:60572500-60572519 None:intergenic 30.0%
ATTGCTGATGTTAAGGATAA+AGG - chr8.2:60573659-60573678 MS.gene61080:CDS 30.0%
ATTGTTAATGATGGTAGAGT+AGG - chr8.2:60572892-60572911 MS.gene61080:intron 30.0%
TCTTTCATGAATGAAGATAG+TGG - chr8.2:60573821-60573840 MS.gene61080:CDS 30.0%
TTGTTAATGATGGTAGAGTA+GGG - chr8.2:60572893-60572912 MS.gene61080:intron 30.0%
! AAGGGTGTAAAGATGAATAA+AGG + chr8.2:60572501-60572520 None:intergenic 30.0%
!! AAGGATAAAGGAAGTGTTAA+AGG - chr8.2:60573671-60573690 MS.gene61080:CDS 30.0%
!! AGGATAAAGGAAGTGTTAAA+GGG - chr8.2:60573672-60573691 MS.gene61080:CDS 30.0%
TATGAAACACAGACACTTCT+GGG + chr8.2:60573281-60573300 None:intergenic 35.0%
TTGAATAGTGATTCGTCGTT+TGG - chr8.2:60573797-60573816 MS.gene61080:CDS 35.0%
TTGCTTAATCTTGTGAGATG+TGG - chr8.2:60573578-60573597 MS.gene61080:CDS 35.0%
! GGACATGATAGGTTCTTTTT+CGG + chr8.2:60572566-60572585 None:intergenic 35.0%
!! TTTAAGAAGGTTTCTGGTGT+TGG - chr8.2:60573485-60573504 MS.gene61080:CDS 35.0%
!!! GATAGGTTCTTTTTCGGTTA+TGG + chr8.2:60572560-60572579 None:intergenic 35.0%
!!! GATTCGGGTTTTTTCTGAAA+CGG + chr8.2:60572383-60572402 None:intergenic 35.0%
!!! GTTCTTTTTCGGTTATGGAA+AGG + chr8.2:60572555-60572574 None:intergenic 35.0%
!!! TTTTGAGTTGATGAGAGTGA+TGG - chr8.2:60573706-60573725 MS.gene61080:CDS 35.0%
AAGTGTTAAAGGGCAGAGTA+AGG - chr8.2:60573682-60573701 MS.gene61080:CDS 40.0%
ACAATCAACGAAAACAACGC+CGG + chr8.2:60572877-60572896 None:intergenic 40.0%
AGCTTACGAACTATGAAGCA+CGG - chr8.2:60573124-60573143 MS.gene61080:intron 40.0%
ATGAATAAAGGGTTTCAGCG+AGG + chr8.2:60572489-60572508 None:intergenic 40.0%
CTATGAAACACAGACACTTC+TGG + chr8.2:60573282-60573301 None:intergenic 40.0%
CTTAATCTTGTGAGATGTGG+TGG - chr8.2:60573581-60573600 MS.gene61080:CDS 40.0%
GATCTACTCGATCTTACTAC+TGG - chr8.2:60573518-60573537 MS.gene61080:CDS 40.0%
GATGATTATCGGACTGTTGT+TGG - chr8.2:60572700-60572719 MS.gene61080:CDS 40.0%
GGATGGAATTGCTGATGTTA+AGG - chr8.2:60573652-60573671 MS.gene61080:CDS 40.0%
TTTCGTCGGTGGATGATTAT+CGG - chr8.2:60572689-60572708 MS.gene61080:CDS 40.0%
! CTGTAGCGTTTTCTTGAGAA+GGG + chr8.2:60572519-60572538 None:intergenic 40.0%
!! AAGTGTTGAGGCGTTTAAGA+AGG - chr8.2:60573472-60573491 MS.gene61080:CDS 40.0%
!! TTACTACTGGTTCGAGTATG+AGG - chr8.2:60573531-60573550 MS.gene61080:CDS 40.0%
AAGAAGGCTGTGAATCGTAG+CGG + chr8.2:60572671-60572690 None:intergenic 45.0%
AATAACCTGCGCAATAACCG+CGG + chr8.2:60572935-60572954 None:intergenic 45.0%
AATCATCCACCGACGAAAGA+AGG + chr8.2:60572687-60572706 None:intergenic 45.0%
ACATCTCTGATATAGGTCGC+CGG - chr8.2:60573440-60573459 MS.gene61080:CDS 45.0%
CAAACTGAACCATCGTAGCA+CGG + chr8.2:60572846-60572865 None:intergenic 45.0%
CTATGAAGCACGGAATGACA+TGG - chr8.2:60573134-60573153 MS.gene61080:intron 45.0%
CTCGATGAGTGATTCGATTC+GGG + chr8.2:60572398-60572417 None:intergenic 45.0%
GATTCACAGCCTTCTTTCGT+CGG - chr8.2:60572675-60572694 MS.gene61080:CDS 45.0%
GATTGTTGAAGATGCTTCCG+CGG - chr8.2:60572915-60572934 MS.gene61080:intron 45.0%
GCTCGATGAGTGATTCGATT+CGG + chr8.2:60572399-60572418 None:intergenic 45.0%
GTAAGGAATTGCGCCTGATT+CGG + chr8.2:60572467-60572486 None:intergenic 45.0%
TAAAGGGTTTCAGCGAGGTA+AGG + chr8.2:60572484-60572503 None:intergenic 45.0%
! CATGGTGATGTTCGTAGTCA+TGG - chr8.2:60573764-60573783 MS.gene61080:CDS 45.0%
! GAGGCGTTTAAGAAGGTTTC+TGG - chr8.2:60573479-60573498 MS.gene61080:CDS 45.0%
! GCTGTAGCGTTTTCTTGAGA+AGG + chr8.2:60572520-60572539 None:intergenic 45.0%
! GTTCGTAGTCATGGTGATGT+TGG - chr8.2:60573755-60573774 MS.gene61080:CDS 45.0%
! TGATTCGGCTATTATGGGTC+GGG + chr8.2:60572452-60572471 None:intergenic 45.0%
!! CTGATTCGGCTATTATGGGT+CGG + chr8.2:60572453-60572472 None:intergenic 45.0%
!! GAGTTGATGAGAGTGATGGT+TGG - chr8.2:60573710-60573729 MS.gene61080:CDS 45.0%
!! GATTATTAGCGGTGTCGACA+TGG + chr8.2:60573166-60573185 None:intergenic 45.0%
!! GGTTCAGTTTGGTGTTGTTC+CGG - chr8.2:60572855-60572874 MS.gene61080:intron 45.0%
!! GTTGGTGATGTTCGTAGTCA+CGG - chr8.2:60573728-60573747 MS.gene61080:CDS 45.0%
AACGAATCCTTCACCGTCCT+TGG + chr8.2:60572787-60572806 None:intergenic 50.0%
ACCATCGTAGCACGGTTCAA+CGG + chr8.2:60572838-60572857 None:intergenic 50.0%
ACTGACATGTGTCCGACACT+GGG - chr8.2:60573244-60573263 MS.gene61080:CDS 50.0%
CACGGTGATGTTCGTAGTCA+TGG - chr8.2:60573746-60573765 MS.gene61080:CDS 50.0%
CGACCCATAATAGCCGAATC+AGG - chr8.2:60572451-60572470 MS.gene61080:CDS 50.0%
CGTGCTACGATGGTTCAGTT+TGG - chr8.2:60572844-60572863 MS.gene61080:intron 50.0%
CTCAACACTTTCCTCGCAAC+CGG + chr8.2:60573462-60573481 None:intergenic 50.0%
GACGAGGGAAAATGCAGTGT+CGG - chr8.2:60573553-60573572 MS.gene61080:CDS 50.0%
GACGGTGAAGGATTCGTTGA+AGG - chr8.2:60572789-60572808 MS.gene61080:intron 50.0%
TGGTTCGAGTATGAGGACGA+GGG - chr8.2:60573538-60573557 MS.gene61080:CDS 50.0%
! GATTAGTCGTGTCCCAGTGT+CGG + chr8.2:60573259-60573278 None:intergenic 50.0%
! TGTGAGATGTGGTGGAGATG+TGG - chr8.2:60573589-60573608 MS.gene61080:CDS 50.0%
!! GCGCCTGATTCGGCTATTAT+GGG + chr8.2:60572457-60572476 None:intergenic 50.0%
!! GCTATTATGGGTCGGGTTGA+GGG + chr8.2:60572445-60572464 None:intergenic 50.0%
!! TGCGCCTGATTCGGCTATTA+TGG + chr8.2:60572458-60572477 None:intergenic 50.0%
AAGGCTGTGAATCGTAGCGG+CGG + chr8.2:60572668-60572687 None:intergenic 55.0%
CACTGACATGTGTCCGACAC+TGG - chr8.2:60573243-60573262 MS.gene61080:CDS 55.0%
CGCTGGAGATGTAAGAGACG+CGG - chr8.2:60573613-60573632 MS.gene61080:CDS 55.0%
GAACCTATCATGTCCACGCG+CGG - chr8.2:60572571-60572590 MS.gene61080:CDS 55.0%
GAATCCTTCACCGTCCTTGG+CGG + chr8.2:60572784-60572803 None:intergenic 55.0%
TCACAGCCTTCTTTCGTCGG+TGG - chr8.2:60572678-60572697 MS.gene61080:CDS 55.0%
TCCGTTGAACCGTGCTACGA+TGG - chr8.2:60572834-60572853 MS.gene61080:intron 55.0%
TGGAGATGTAAGAGACGCGG+TGG - chr8.2:60573616-60573635 MS.gene61080:CDS 55.0%
! CTGGTTCGAGTATGAGGACG+AGG - chr8.2:60573537-60573556 MS.gene61080:CDS 55.0%
! GGCTATTATGGGTCGGGTTG+AGG + chr8.2:60572446-60572465 None:intergenic 55.0%
!! ATTAGCGGTGTCGACATGGC+AGG + chr8.2:60573162-60573181 None:intergenic 55.0%
!! CGGTTGCGAGGAAAGTGTTG+AGG - chr8.2:60573460-60573479 MS.gene61080:CDS 55.0%
!! GGTTTCTGGTGTTGGAGTGC+TGG - chr8.2:60573493-60573512 MS.gene61080:CDS 55.0%
!! TTCTGGTGTTGGAGTGCTGG+CGG - chr8.2:60573496-60573515 MS.gene61080:CDS 55.0%
ACACCGCGCGTGGACATGAT+AGG + chr8.2:60572577-60572596 None:intergenic 60.0%
CCGTCCTTGGCGGTGAAGAA+CGG + chr8.2:60572774-60572793 None:intergenic 60.0%
CCGTTCTTCACCGCCAAGGA+CGG - chr8.2:60572771-60572790 MS.gene61080:intron 60.0%
GTAAGAGACGCGGTGGCGTT+TGG - chr8.2:60573623-60573642 MS.gene61080:CDS 60.0%
GTCACCGTTCTTCACCGCCA+AGG - chr8.2:60572767-60572786 MS.gene61080:intron 60.0%
TGCTTCCGCGGTTATTGCGC+AGG - chr8.2:60572927-60572946 MS.gene61080:intron 60.0%
TTCACCGCCAAGGACGGTGA+AGG - chr8.2:60572777-60572796 MS.gene61080:intron 60.0%
! GATATAGGTCGCCGGTTGCG+AGG - chr8.2:60573448-60573467 MS.gene61080:CDS 60.0%
! TGTGGTGGAGATGTGGTCGC+TGG - chr8.2:60573596-60573615 MS.gene61080:CDS 60.0%
!! GTGGCGTTTGGTGCGTTGGA+TGG - chr8.2:60573635-60573654 MS.gene61080:CDS 60.0%
ATACTAGCGTCCGCACCGCG+CGG + chr8.2:60572348-60572367 None:intergenic 65.0%
GCTGTGAATCGTAGCGGCGG+CGG + chr8.2:60572665-60572684 None:intergenic 65.0%
!! AGCGGCGGCGGATTGAACAG+CGG + chr8.2:60572653-60572672 None:intergenic 65.0%
GGATTGAACAGCGGCGGCGG+CGG + chr8.2:60572644-60572663 None:intergenic 70.0%
!! CGCGGTGGCGTTTGGTGCGT+TGG - chr8.2:60573631-60573650 MS.gene61080:CDS 70.0%
!! GGCGGATTGAACAGCGGCGG+CGG + chr8.2:60572647-60572666 None:intergenic 70.0%
!! GGCGGCGGATTGAACAGCGG+CGG + chr8.2:60572650-60572669 None:intergenic 70.0%
ACGCAAACCGCCGCGCGGTG+CGG - chr8.2:60572335-60572354 MS.gene61080:CDS 75.0%
CGCGTCGAGAACACCGCGCG+TGG + chr8.2:60572587-60572606 None:intergenic 75.0%
TTGAACAGCGGCGGCGGCGG+AGG + chr8.2:60572641-60572660 None:intergenic 75.0%
! CTAGCGTCCGCACCGCGCGG+CGG + chr8.2:60572345-60572364 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 60572331 60573856 60572331 ID=MS.gene61080
chr8.2 mRNA 60572331 60573856 60572331 ID=MS.gene61080.t1;Parent=MS.gene61080
chr8.2 exon 60573239 60573856 60573239 ID=MS.gene61080.t1.exon1;Parent=MS.gene61080.t1
chr8.2 CDS 60573239 60573856 60573239 ID=cds.MS.gene61080.t1;Parent=MS.gene61080.t1
chr8.2 exon 60572331 60572732 60572331 ID=MS.gene61080.t1.exon2;Parent=MS.gene61080.t1
chr8.2 CDS 60572331 60572732 60572331 ID=cds.MS.gene61080.t1;Parent=MS.gene61080.t1
Gene Sequence

>MS.gene61080

ATGGACGCAAACCGCCGCGCGGTGCGGACGCTAGTATCAAAACTAAGCTCCGTTTCAGAAAAAACCCGAATCGAATCACTCATCGAGCTTCGTCAATTATCAAAACAAGATCCCTCAACCCGACCCATAATAGCCGAATCAGGCGCAATTCCTTACCTCGCTGAAACCCTTTATTCATCTTTACACCCTTCTCAAGAAAACGCTACAGCAACACTTTTAAACCTTTCCATAACCGAAAAAGAACCTATCATGTCCACGCGCGGTGTTCTCGACGCGCTTGCGCATGTGATCTCTCATCATTCATCTACCTCCGCCGCCGCCGCTGTTCAATCCGCCGCCGCTACGATTCACAGCCTTCTTTCGTCGGTGGATGATTATCGGACTGTTGTTGGATCTAAACGTGAGATTGTTTATGCGCTTGTTGATATTCTTCGTTGTCACCGTTCTTCACCGCCAAGGACGGTGAAGGATTCGTTGAAGGCGCTTTTTGCAATCGCGCTTCATCCGTTGAACCGTGCTACGATGGTTCAGTTTGGTGTTGTTCCGGCGTTGTTTTCGTTGATTGTTAATGATGGTAGAGTAGGGATTGTTGAAGATGCTTCCGCGGTTATTGCGCAGGTTATTACAATTCTTGATAGAACTCATATCTATAGAAATGTATATAGATAGAAATGTATATAGATAGAAGAAATTGAATTAAATTAAGGACAGTTTGAATTGCCTTATTTTTTAGCTTATGAATGCTAATTTATAAGTTCTTCATAAGCTGTTTTTTTCATGAACTAGCTCGACAAGCTTACGAACTATGAAGCACGGAATGACATGGATCCTGCCATGTCGACACCGCTAATAATCTGAGAAAATCACATAATTTAGTGCAATCATATTTGTCGGCGTCTTGTTGATGTCAGACACTGACATGTGTCCGACACTGGGACACGACTAATCCCAGAAGTGTCTGTGTTTCATAGCTTATGAATAGTACAATGCAAGCTTAACTTGCATAAGCTCAAAAATAAGTCAATCCAAACAGACCTAAGTAATATAATACGATAGCCGGTTAGAACAACTAACTCTTTACTAATGTAACTAATATGTAACTAACTTTTACATCTCTGATATAGGTCGCCGGTTGCGAGGAAAGTGTTGAGGCGTTTAAGAAGGTTTCTGGTGTTGGAGTGCTGGCGGATCTACTCGATCTTACTACTGGTTCGAGTATGAGGACGAGGGAAAATGCAGTGTCGGCATTGCTTAATCTTGTGAGATGTGGTGGAGATGTGGTCGCTGGAGATGTAAGAGACGCGGTGGCGTTTGGTGCGTTGGATGGAATTGCTGATGTTAAGGATAAAGGAAGTGTTAAAGGGCAGAGTAAGGCTTTTGAGTTGATGAGAGTGATGGTTGGTGATGTTCGTAGTCACGGTGATGTTCGTAGTCATGGTGATGTTCGTAGTCATGGTGATGTTGGTTTGAATAGTGATTCGTCGTTTGGTTCTTTCATGAATGAAGATAGTGGAACGTCATTTTGA
Protein sequence

>MS.gene61080.t1

MDANRRAVRTLVSKLSSVSEKTRIESLIELRQLSKQDPSTRPIIAESGAIPYLAETLYSSLHPSQENATATLLNLSITEKEPIMSTRGVLDALAHVISHHSSTSAAAAVQSAAATIHSLLSSVDDYRTVVGSKREIVYALVDILRCHRSSPPRTVKDSLKALFAIALHPLNRATMVQFGVVPALFSLIVNDGRVGIVEDASAVIAQVAGCEESVEAFKKVSGVGVLADLLDLTTGSSMRTRENAVSALLNLVRCGGDVVAGDVRDAVAFGALDGIADVKDKGSVKGQSKAFELMRVMVGDVRSHGDVRSHGDVRSHGDVGLNSDSSFGSFMNEDSGTSF