Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61232.t1 | XP_024637044.1 | 95 | 139 | 7 | 0 | 36 | 174 | 243 | 381 | 6.40E-68 | 266.9 |
| MS.gene61232.t1 | XP_024637044.1 | 69.4 | 36 | 11 | 0 | 1 | 36 | 1 | 36 | 1.30E-04 | 56.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61232.t1 | O49725 | 62.4 | 133 | 46 | 1 | 38 | 170 | 247 | 375 | 8.3e-40 | 164.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61232.t1 | A0A396IJN7 | 95.0 | 139 | 7 | 0 | 36 | 174 | 243 | 381 | 4.6e-68 | 266.9 |
| MS.gene61232.t1 | A0A396IJN7 | 69.4 | 36 | 11 | 0 | 1 | 36 | 1 | 36 | 9.5e-05 | 56.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene61232 | 0.813793 | 2.14E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene61232 | 0.802669 | 5.03E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene61232 | 0.804493 | 2.10E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene61232 | 0.821001 | 5.09E-53 | -1.69E-46 |
| MS.gene058769 | MS.gene61232 | 0.809715 | 1.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61232.t1 | MTR_4g098900 | 82.353 | 136 | 7 | 1 | 36 | 171 | 243 | 361 | 4.06e-74 | 228 |
| MS.gene61232.t1 | MTR_4g098900 | 88.889 | 36 | 4 | 0 | 1 | 36 | 1 | 36 | 4.07e-11 | 60.8 |
| MS.gene61232.t1 | MTR_2g015470 | 67.391 | 138 | 45 | 0 | 36 | 173 | 245 | 382 | 2.43e-60 | 192 |
| MS.gene61232.t1 | MTR_7g080750 | 61.475 | 122 | 47 | 0 | 36 | 157 | 216 | 337 | 2.16e-50 | 165 |
| MS.gene61232.t1 | MTR_3g058660 | 52.672 | 131 | 62 | 0 | 38 | 168 | 222 | 352 | 1.51e-46 | 155 |
| MS.gene61232.t1 | MTR_6g082540 | 50.847 | 118 | 58 | 0 | 38 | 155 | 40 | 157 | 4.39e-42 | 139 |
| MS.gene61232.t1 | MTR_5g065080 | 36.800 | 125 | 79 | 0 | 41 | 165 | 234 | 358 | 2.03e-23 | 95.1 |
| MS.gene61232.t1 | MTR_3g099750 | 33.333 | 141 | 92 | 2 | 30 | 170 | 224 | 362 | 1.34e-21 | 90.1 |
| MS.gene61232.t1 | MTR_8g024620 | 35.043 | 117 | 76 | 0 | 40 | 156 | 242 | 358 | 2.51e-20 | 86.7 |
| MS.gene61232.t1 | MTR_8g024620 | 35.043 | 117 | 76 | 0 | 40 | 156 | 253 | 369 | 2.69e-20 | 86.7 |
| MS.gene61232.t1 | MTR_8g024620 | 35.043 | 117 | 76 | 0 | 40 | 156 | 254 | 370 | 2.71e-20 | 86.7 |
| MS.gene61232.t1 | MTR_3g099740 | 31.159 | 138 | 92 | 1 | 35 | 169 | 230 | 367 | 5.20e-20 | 85.9 |
| MS.gene61232.t1 | MTR_2g437580 | 30.159 | 126 | 87 | 1 | 43 | 167 | 255 | 380 | 3.06e-13 | 67.0 |
| MS.gene61232.t1 | MTR_2g437590 | 31.405 | 121 | 80 | 2 | 43 | 160 | 274 | 394 | 3.54e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61232.t1 | AT4G18210 | 62.406 | 133 | 46 | 1 | 38 | 170 | 247 | 375 | 7.28e-52 | 170 |
| MS.gene61232.t1 | AT4G18220 | 62.602 | 123 | 46 | 0 | 38 | 160 | 247 | 369 | 1.86e-50 | 167 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 167 | 300 | 7.13e-47 | 155 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 167 | 300 | 7.13e-47 | 155 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 167 | 300 | 7.13e-47 | 155 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 167 | 300 | 7.13e-47 | 155 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 167 | 300 | 7.13e-47 | 155 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 231 | 364 | 9.90e-46 | 154 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 231 | 364 | 9.90e-46 | 154 |
| MS.gene61232.t1 | AT1G44750 | 51.095 | 137 | 64 | 1 | 36 | 172 | 243 | 376 | 1.15e-45 | 154 |
| MS.gene61232.t1 | AT4G18197 | 52.419 | 124 | 59 | 0 | 38 | 161 | 247 | 370 | 1.62e-43 | 149 |
| MS.gene61232.t1 | AT4G18195 | 52.817 | 142 | 61 | 1 | 38 | 173 | 250 | 391 | 5.74e-42 | 144 |
| MS.gene61232.t1 | AT4G18205 | 56.452 | 124 | 54 | 0 | 38 | 161 | 244 | 367 | 3.61e-40 | 139 |
| MS.gene61232.t1 | AT4G18190 | 56.098 | 123 | 54 | 0 | 38 | 160 | 244 | 366 | 8.20e-37 | 131 |
| MS.gene61232.t1 | AT4G08700 | 49.600 | 125 | 63 | 0 | 36 | 160 | 232 | 356 | 1.81e-36 | 129 |
| MS.gene61232.t1 | AT5G41160 | 48.000 | 125 | 65 | 0 | 36 | 160 | 235 | 359 | 5.87e-34 | 123 |
| MS.gene61232.t1 | AT2G33750 | 34.667 | 150 | 97 | 1 | 18 | 166 | 191 | 340 | 2.03e-26 | 102 |
| MS.gene61232.t1 | AT2G33750 | 32.298 | 161 | 97 | 2 | 18 | 166 | 191 | 351 | 3.87e-23 | 94.4 |
| MS.gene61232.t1 | AT1G28220 | 37.168 | 113 | 71 | 0 | 35 | 147 | 207 | 319 | 5.59e-22 | 90.9 |
| MS.gene61232.t1 | AT1G47603 | 42.017 | 119 | 66 | 1 | 40 | 155 | 263 | 381 | 1.03e-21 | 90.9 |
| MS.gene61232.t1 | AT1G19770 | 39.344 | 122 | 71 | 1 | 38 | 156 | 271 | 392 | 2.94e-21 | 89.4 |
| MS.gene61232.t1 | AT1G28230 | 36.842 | 114 | 71 | 1 | 43 | 155 | 221 | 334 | 7.54e-19 | 82.4 |
| MS.gene61232.t1 | AT1G57980 | 36.975 | 119 | 72 | 1 | 40 | 155 | 262 | 380 | 2.76e-18 | 81.3 |
| MS.gene61232.t1 | AT1G57990 | 35.294 | 119 | 74 | 1 | 40 | 155 | 258 | 376 | 5.28e-17 | 77.8 |
| MS.gene61232.t1 | AT1G57943 | 33.582 | 134 | 80 | 2 | 40 | 170 | 266 | 393 | 9.44e-17 | 77.0 |
| MS.gene61232.t1 | AT1G57943 | 33.582 | 134 | 80 | 2 | 40 | 170 | 265 | 392 | 9.78e-17 | 77.0 |
| MS.gene61232.t1 | AT2G24220 | 31.068 | 103 | 71 | 0 | 40 | 142 | 256 | 358 | 9.07e-14 | 68.6 |
| MS.gene61232.t1 | AT2G24220 | 31.068 | 103 | 71 | 0 | 40 | 142 | 238 | 340 | 1.28e-13 | 67.8 |
| MS.gene61232.t1 | AT1G75470 | 34.821 | 112 | 71 | 1 | 38 | 147 | 261 | 372 | 1.43e-13 | 67.8 |
| MS.gene61232.t1 | AT1G09860 | 41.270 | 126 | 69 | 2 | 40 | 160 | 250 | 375 | 6.98e-11 | 60.1 |
Find 43 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCTTGATGTTAGCAATA+TGG | 0.260377 | 8.2:-23246978 | MS.gene61232:CDS |
| GTATCTTCCATTGGTATGTT+AGG | 0.270589 | 8.2:-23247117 | MS.gene61232:CDS |
| CATATATAATGACTTTGTTT+TGG | 0.282504 | 8.2:-23247158 | MS.gene61232:CDS |
| GCTACTTGTGCTTGTGTTGT+TGG | 0.342888 | 8.2:-23247249 | MS.gene61232:CDS |
| AGCCTTGATGTTAGCAATAT+GGG | 0.344380 | 8.2:-23246977 | MS.gene61232:CDS |
| TTCTCTAATGGAGATAGTTC+AGG | 0.361251 | 8.2:-23248464 | None:intergenic |
| GGAGATGAAGGAATATGAAC+TGG | 0.366582 | 8.2:-23247190 | MS.gene61232:CDS |
| CTCATCTTCATGAGGTTTCA+AGG | 0.373710 | 8.2:-23246894 | MS.gene61232:CDS |
| TTCTTCCATGACAAAATCAA+TGG | 0.388872 | 8.2:-23247012 | MS.gene61232:CDS |
| CTACTTGTGCTTGTGTTGTT+GGG | 0.389251 | 8.2:-23247248 | MS.gene61232:CDS |
| AGAATGGAAAAGTTTGAATA+AGG | 0.399319 | 8.2:-23247211 | MS.gene61232:CDS |
| GCACAAGTAGCGACGAAAGA+AGG | 0.407661 | 8.2:+23247261 | None:intergenic |
| TAGATAATGTTGATAAATAT+AGG | 0.416324 | 8.2:+23246945 | None:intergenic |
| TATCTTCCATTGGTATGTTA+GGG | 0.435640 | 8.2:-23247116 | MS.gene61232:CDS |
| TCTTCCATGACAAAATCAAT+GGG | 0.440740 | 8.2:-23247011 | MS.gene61232:CDS |
| GGTTGTTTGCAAGTGGAGAA+TGG | 0.463564 | 8.2:-23247227 | MS.gene61232:CDS |
| AAAGATTAAGAGATTTCAAA+TGG | 0.470365 | 8.2:-23247917 | MS.gene61232:CDS |
| TCTCTTAATCTTTGATGTTG+AGG | 0.470898 | 8.2:+23247927 | None:intergenic |
| GAAGAAAATAACAGCAAGGA+TGG | 0.477070 | 8.2:+23247029 | None:intergenic |
| CAGTAGTTGTAGTTGATTGT+GGG | 0.484203 | 8.2:+23248434 | None:intergenic |
| TCATGAGGTTTCAAGGGGTG+AGG | 0.500851 | 8.2:-23246887 | MS.gene61232:CDS |
| AAGTTTGAATAAGGAGATGA+AGG | 0.509849 | 8.2:-23247202 | MS.gene61232:CDS |
| TCATCTTCATGAGGTTTCAA+GGG | 0.524727 | 8.2:-23246893 | MS.gene61232:CDS |
| GCAGTAGTTGTAGTTGATTG+TGG | 0.527047 | 8.2:+23248433 | None:intergenic |
| ACAGCAAGGATGGGACCTAC+AGG | 0.527733 | 8.2:+23247039 | None:intergenic |
| CACAAGTAGCGACGAAAGAA+GGG | 0.536717 | 8.2:+23247262 | None:intergenic |
| GTTGTTGGGTTGTTTGCAAG+TGG | 0.551141 | 8.2:-23247234 | MS.gene61232:CDS |
| TCCCCATATTGCTAACATCA+AGG | 0.553521 | 8.2:+23246975 | None:intergenic |
| CAATCAACTACAACTACTGC+AGG | 0.567854 | 8.2:-23248430 | MS.gene61232:intron |
| AACTAACCCTAACATACCAA+TGG | 0.573549 | 8.2:+23247110 | None:intergenic |
| ACATGGCAAGTATCTTCCAT+TGG | 0.573996 | 8.2:-23247126 | MS.gene61232:CDS |
| GATTAAGAGATTTCAAATGG+TGG | 0.581181 | 8.2:-23247914 | MS.gene61232:CDS |
| GAAGGAATATGAACTGGGAA+AGG | 0.585101 | 8.2:-23247184 | MS.gene61232:CDS |
| GTGAGGTTGAAATTTGCTGA+TGG | 0.585220 | 8.2:-23246870 | None:intergenic |
| GAGATGAAGGAATATGAACT+GGG | 0.604093 | 8.2:-23247189 | MS.gene61232:CDS |
| GCCTTGATGTTAGCAATATG+GGG | 0.607447 | 8.2:-23246976 | MS.gene61232:CDS |
| AAGAAAATAACAGCAAGGAT+GGG | 0.616093 | 8.2:+23247030 | None:intergenic |
| CATCTTCATGAGGTTTCAAG+GGG | 0.629974 | 8.2:-23246892 | MS.gene61232:CDS |
| CATGGAAGAAAATAACAGCA+AGG | 0.631020 | 8.2:+23247025 | None:intergenic |
| AATACAGTGGTACTTCCTGT+AGG | 0.636862 | 8.2:-23247054 | MS.gene61232:CDS |
| GAATAAAACTCATCTTCATG+AGG | 0.640768 | 8.2:-23246902 | MS.gene61232:CDS |
| CTCAAATGTAATAAATACAG+TGG | 0.647972 | 8.2:-23247067 | MS.gene61232:CDS |
| CTTCCATGACAAAATCAATG+GGG | 0.656091 | 8.2:-23247010 | MS.gene61232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAATATTGATATTTATGT+TGG | + | chr8.2:23247620-23247639 | None:intergenic | 15.0% |
| !!! | TAGATAATGTTGATAAATAT+AGG | + | chr8.2:23248388-23248407 | None:intergenic | 15.0% |
| !! | AAAGATTAAGAGATTTCAAA+TGG | - | chr8.2:23247413-23247432 | MS.gene61232:intron | 20.0% |
| !! | AGAAATTCATAACAAGAAAT+TGG | + | chr8.2:23247363-23247382 | None:intergenic | 20.0% |
| !! | GAAATTCATAACAAGAAATT+GGG | + | chr8.2:23247362-23247381 | None:intergenic | 20.0% |
| !! | TCCTAACTATTGAAAATTAT+TGG | - | chr8.2:23247151-23247170 | MS.gene61232:CDS | 20.0% |
| !!! | AAATTTTGGTTTGGTTTTTT+TGG | + | chr8.2:23247647-23247666 | None:intergenic | 20.0% |
| !!! | ATAATTTTCAATAGTTAGGA+AGG | + | chr8.2:23247151-23247170 | None:intergenic | 20.0% |
| !!! | CATATATAATGACTTTGTTT+TGG | - | chr8.2:23248172-23248191 | MS.gene61232:intron | 20.0% |
| !!! | GTTTCTCTTTACATATTTTT+TGG | - | chr8.2:23247676-23247695 | MS.gene61232:intron | 20.0% |
| ! | AGAATGGAAAAGTTTGAATA+AGG | - | chr8.2:23248119-23248138 | MS.gene61232:intron | 25.0% |
| ! | AGACTATATTATGATAAAGG+TGG | - | chr8.2:23247502-23247521 | MS.gene61232:intron | 25.0% |
| ! | ATAAAGGTGGTAATAGTAAA+TGG | - | chr8.2:23247515-23247534 | MS.gene61232:intron | 25.0% |
| ! | CTCAAATGTAATAAATACAG+TGG | - | chr8.2:23248263-23248282 | MS.gene61232:intron | 25.0% |
| ! | GGAAGACTATATTATGATAA+AGG | - | chr8.2:23247499-23247518 | MS.gene61232:intron | 25.0% |
| ! | TATGTAAAGAGAAACAATGA+TGG | + | chr8.2:23247671-23247690 | None:intergenic | 25.0% |
| !! | AATACATCAAAACTTGCTTT+AGG | - | chr8.2:23247125-23247144 | MS.gene61232:CDS | 25.0% |
| !! | GATATTTATGTTGGTAGATT+TGG | + | chr8.2:23247611-23247630 | None:intergenic | 25.0% |
| !! | GCCAATAATTTTCAATAGTT+AGG | + | chr8.2:23247155-23247174 | None:intergenic | 25.0% |
| !! | TACATAGTATTTCTTTTGGT+AGG | - | chr8.2:23247454-23247473 | MS.gene61232:intron | 25.0% |
| !! | TCTCTACATAGTATTTCTTT+TGG | - | chr8.2:23247450-23247469 | MS.gene61232:intron | 25.0% |
| !!! | AATGATGGAAAATTTTGGTT+TGG | + | chr8.2:23247656-23247675 | None:intergenic | 25.0% |
| !!! | GAAACAATGATGGAAAATTT+TGG | + | chr8.2:23247661-23247680 | None:intergenic | 25.0% |
| AAAATGTAATAGATGCACCA+AGG | + | chr8.2:23247963-23247982 | None:intergenic | 30.0% | |
| AAATAGAGTGGAAGTAGTAT+AGG | + | chr8.2:23247571-23247590 | None:intergenic | 30.0% | |
| AAATGTAATAGATGCACCAA+GGG | + | chr8.2:23247962-23247981 | None:intergenic | 30.0% | |
| AAGAAAATAACAGCAAGGAT+GGG | + | chr8.2:23248303-23248322 | None:intergenic | 30.0% | |
| AAGTTTGAATAAGGAGATGA+AGG | - | chr8.2:23248128-23248147 | MS.gene61232:intron | 30.0% | |
| AATAGAGTGGAAGTAGTATA+GGG | + | chr8.2:23247570-23247589 | None:intergenic | 30.0% | |
| ATATAGTCTTCCCAAAAGAT+TGG | + | chr8.2:23247491-23247510 | None:intergenic | 30.0% | |
| ATCATCAGAATCGTTATTGA+TGG | + | chr8.2:23247893-23247912 | None:intergenic | 30.0% | |
| GAATAAAACTCATCTTCATG+AGG | - | chr8.2:23248428-23248447 | MS.gene61232:intron | 30.0% | |
| GACAATTTGATGTATTCCAA+TGG | - | chr8.2:23247715-23247734 | MS.gene61232:intron | 30.0% | |
| GATTAAGAGATTTCAAATGG+TGG | - | chr8.2:23247416-23247435 | MS.gene61232:intron | 30.0% | |
| GTAAGAAAATACTGCATTGA+AGG | + | chr8.2:23247794-23247813 | None:intergenic | 30.0% | |
| TATCTTCCATTGGTATGTTA+GGG | - | chr8.2:23248214-23248233 | MS.gene61232:intron | 30.0% | |
| TCAGTAGTGAAAGATTAACA+TGG | + | chr8.2:23247177-23247196 | None:intergenic | 30.0% | |
| TCTCTTAATCTTTGATGTTG+AGG | + | chr8.2:23247406-23247425 | None:intergenic | 30.0% | |
| TCTTCCATGACAAAATCAAT+GGG | - | chr8.2:23248319-23248338 | MS.gene61232:intron | 30.0% | |
| TGAAAGATATAGAAGTCCAT+TGG | + | chr8.2:23247734-23247753 | None:intergenic | 30.0% | |
| TGTTGCACATAGTAAAGAAT+AGG | + | chr8.2:23247764-23247783 | None:intergenic | 30.0% | |
| TTCTTCCATGACAAAATCAA+TGG | - | chr8.2:23248318-23248337 | MS.gene61232:intron | 30.0% | |
| ! | ACACAAAGTTGAGTCAATTT+TGG | + | chr8.2:23247242-23247261 | None:intergenic | 30.0% |
| ! | ATATGAATGCTGTGAACTTT+TGG | + | chr8.2:23247828-23247847 | None:intergenic | 30.0% |
| ! | TATGAATGCTGTGAACTTTT+GGG | + | chr8.2:23247827-23247846 | None:intergenic | 30.0% |
| ! | TCTTGTTATGAATTTCTCAG+AGG | - | chr8.2:23247366-23247385 | MS.gene61232:intron | 30.0% |
| !!! | TTTTGGTTTGGTTTTTTTGG+AGG | + | chr8.2:23247644-23247663 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTTACTTTTAGCA+GGG | - | chr8.2:23247692-23247711 | MS.gene61232:intron | 30.0% |
| !!! | TTTTTTGGCTTACTTTTAGC+AGG | - | chr8.2:23247691-23247710 | MS.gene61232:intron | 30.0% |
| AAACTGCATGTCCAAGATAA+CGG | + | chr8.2:23248046-23248065 | None:intergenic | 35.0% | |
| AACTAACCCTAACATACCAA+TGG | + | chr8.2:23248223-23248242 | None:intergenic | 35.0% | |
| AGCCTTGATGTTAGCAATAT+GGG | - | chr8.2:23248353-23248372 | MS.gene61232:intron | 35.0% | |
| AGGTGGTAATAGTAAATGGA+TGG | - | chr8.2:23247519-23247538 | MS.gene61232:intron | 35.0% | |
| CAGTAGTTGTAGTTGATTGT+GGG | + | chr8.2:23246899-23246918 | None:intergenic | 35.0% | |
| CATGGAAGAAAATAACAGCA+AGG | + | chr8.2:23248308-23248327 | None:intergenic | 35.0% | |
| CTTCCATGACAAAATCAATG+GGG | - | chr8.2:23248320-23248339 | MS.gene61232:intron | 35.0% | |
| GAAGAAAATAACAGCAAGGA+TGG | + | chr8.2:23248304-23248323 | None:intergenic | 35.0% | |
| GAGATGAAGGAATATGAACT+GGG | - | chr8.2:23248141-23248160 | MS.gene61232:intron | 35.0% | |
| GGTGTGAAGATAAAATAGAG+TGG | + | chr8.2:23247583-23247602 | None:intergenic | 35.0% | |
| GTATCTTCCATTGGTATGTT+AGG | - | chr8.2:23248213-23248232 | MS.gene61232:intron | 35.0% | |
| TAGAACAATGAACACCAGTA+CGG | + | chr8.2:23247306-23247325 | None:intergenic | 35.0% | |
| TCATCTTCATGAGGTTTCAA+GGG | - | chr8.2:23248437-23248456 | MS.gene61232:CDS | 35.0% | |
| TCTAGATGACAAAAAAGCCA+AGG | - | chr8.2:23248404-23248423 | MS.gene61232:intron | 35.0% | |
| TCTGATAAATCACATGTCGA+TGG | - | chr8.2:23247098-23247117 | MS.gene61232:CDS | 35.0% | |
| TGCACATAGTAAAGAATAGG+TGG | + | chr8.2:23247761-23247780 | None:intergenic | 35.0% | |
| TTTGACTATCAGACTTTGAG+AGG | + | chr8.2:23247068-23247087 | None:intergenic | 35.0% | |
| ! | AATCGTTATTGATGGCAAGT+AGG | + | chr8.2:23247885-23247904 | None:intergenic | 35.0% |
| ! | ATCGTTATTGATGGCAAGTA+GGG | + | chr8.2:23247884-23247903 | None:intergenic | 35.0% |
| ! | CAATCTACAGCCAATCTTTT+GGG | - | chr8.2:23247478-23247497 | MS.gene61232:intron | 35.0% |
| ! | TAGCCTTGATGTTAGCAATA+TGG | - | chr8.2:23248352-23248371 | MS.gene61232:intron | 35.0% |
| ! | TCAATCTACAGCCAATCTTT+TGG | - | chr8.2:23247477-23247496 | MS.gene61232:intron | 35.0% |
| ! | TGAAACCTTTTCCGTTATCT+TGG | - | chr8.2:23248032-23248051 | MS.gene61232:intron | 35.0% |
| !! | CTGTGAACTTTTGGGAATTA+AGG | + | chr8.2:23247819-23247838 | None:intergenic | 35.0% |
| !!! | AAGATGAGTTTTATTCGCCT+TGG | + | chr8.2:23248424-23248443 | None:intergenic | 35.0% |
| !!! | TTTTGGCTTACTTTTAGCAG+GGG | - | chr8.2:23247693-23247712 | MS.gene61232:intron | 35.0% |
| AACTACAACTACTGCAGGTT+AGG | - | chr8.2:23246905-23246924 | MS.gene61232:CDS | 40.0% | |
| AATACAGTGGTACTTCCTGT+AGG | - | chr8.2:23248276-23248295 | MS.gene61232:intron | 40.0% | |
| ACATGGCAAGTATCTTCCAT+TGG | - | chr8.2:23248204-23248223 | MS.gene61232:intron | 40.0% | |
| CAATCAACTACAACTACTGC+AGG | - | chr8.2:23246900-23246919 | MS.gene61232:CDS | 40.0% | |
| CATCTTCATGAGGTTTCAAG+GGG | - | chr8.2:23248438-23248457 | MS.gene61232:CDS | 40.0% | |
| CCAAGTACTCGCTTATCTTT+AGG | + | chr8.2:23247928-23247947 | None:intergenic | 40.0% | |
| CCTAAAGATAAGCGAGTACT+TGG | - | chr8.2:23247925-23247944 | MS.gene61232:CDS | 40.0% | |
| CTCATCTTCATGAGGTTTCA+AGG | - | chr8.2:23248436-23248455 | MS.gene61232:CDS | 40.0% | |
| GAAGGAATATGAACTGGGAA+AGG | - | chr8.2:23248146-23248165 | MS.gene61232:intron | 40.0% | |
| GCAACATTTGTTCAATCAGC+TGG | - | chr8.2:23247541-23247560 | MS.gene61232:intron | 40.0% | |
| GCAGTAGTTGTAGTTGATTG+TGG | + | chr8.2:23246900-23246919 | None:intergenic | 40.0% | |
| GCCTTGATGTTAGCAATATG+GGG | - | chr8.2:23248354-23248373 | MS.gene61232:intron | 40.0% | |
| GGAGATGAAGGAATATGAAC+TGG | - | chr8.2:23248140-23248159 | MS.gene61232:intron | 40.0% | |
| GTCAAAAGAAAGCTGCACAA+GGG | + | chr8.2:23247998-23248017 | None:intergenic | 40.0% | |
| TCCCCATATTGCTAACATCA+AGG | + | chr8.2:23248358-23248377 | None:intergenic | 40.0% | |
| TGTCAAAAGAAAGCTGCACA+AGG | + | chr8.2:23247999-23248018 | None:intergenic | 40.0% | |
| ! | ATGTTGGTAGATTTGGCATG+TGG | + | chr8.2:23247604-23247623 | None:intergenic | 40.0% |
| ! | CTACTTGTGCTTGTGTTGTT+GGG | - | chr8.2:23248082-23248101 | MS.gene61232:intron | 40.0% |
| !! | CATGTCCAAGATAACGGAAA+AGG | + | chr8.2:23248040-23248059 | None:intergenic | 40.0% |
| !! | TGTTTTGGATTGCTGTGACA+TGG | - | chr8.2:23248187-23248206 | MS.gene61232:intron | 40.0% |
| !!! | TCACCCCATTGATTTTGTCA+TGG | + | chr8.2:23248326-23248345 | None:intergenic | 40.0% |
| ACTACTGCAGGTTAGGAACA+TGG | - | chr8.2:23246912-23246931 | MS.gene61232:CDS | 45.0% | |
| CACAAGTAGCGACGAAAGAA+GGG | + | chr8.2:23248071-23248090 | None:intergenic | 45.0% | |
| GCTACTTGTGCTTGTGTTGT+TGG | - | chr8.2:23248081-23248100 | MS.gene61232:intron | 45.0% | |
| GGTTGTTTGCAAGTGGAGAA+TGG | - | chr8.2:23248103-23248122 | MS.gene61232:intron | 45.0% | |
| ! | GTTGTTGGGTTGTTTGCAAG+TGG | - | chr8.2:23248096-23248115 | MS.gene61232:intron | 45.0% |
| ! | TTTGCTCTTTTGAGCCGTAC+TGG | - | chr8.2:23247289-23247308 | MS.gene61232:intron | 45.0% |
| AAGACACTACCGTTGCTCTG+CGG | - | chr8.2:23247204-23247223 | MS.gene61232:CDS | 50.0% | |
| CTTGGATTCGTCTTCACCCT+TGG | - | chr8.2:23247943-23247962 | MS.gene61232:CDS | 50.0% | |
| GCACAAGTAGCGACGAAAGA+AGG | + | chr8.2:23248072-23248091 | None:intergenic | 50.0% | |
| TCATGAGGTTTCAAGGGGTG+AGG | - | chr8.2:23248443-23248462 | MS.gene61232:CDS | 50.0% | |
| ACAGCAAGGATGGGACCTAC+AGG | + | chr8.2:23248294-23248313 | None:intergenic | 55.0% | |
| TGTCTCTGACCGCAGAGCAA+CGG | + | chr8.2:23247216-23247235 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 23246873 | 23248479 | 23246873 | ID=MS.gene61232 |
| chr8.2 | mRNA | 23246873 | 23248479 | 23246873 | ID=MS.gene61232.t1;Parent=MS.gene61232 |
| chr8.2 | exon | 23248431 | 23248479 | 23248431 | ID=MS.gene61232.t1.exon1;Parent=MS.gene61232.t1 |
| chr8.2 | CDS | 23248431 | 23248479 | 23248431 | ID=cds.MS.gene61232.t1;Parent=MS.gene61232.t1 |
| chr8.2 | exon | 23247908 | 23247966 | 23247908 | ID=MS.gene61232.t1.exon2;Parent=MS.gene61232.t1 |
| chr8.2 | CDS | 23247908 | 23247966 | 23247908 | ID=cds.MS.gene61232.t1;Parent=MS.gene61232.t1 |
| chr8.2 | exon | 23246873 | 23247289 | 23246873 | ID=MS.gene61232.t1.exon3;Parent=MS.gene61232.t1 |
| chr8.2 | CDS | 23246873 | 23247289 | 23246873 | ID=cds.MS.gene61232.t1;Parent=MS.gene61232.t1 |
| Gene Sequence |
| Protein sequence |
