Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61293.t1 | XP_003608666.1 | 98.3 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 5.20E-205 | 723.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61293.t1 | Q8L7W2 | 59.4 | 362 | 131 | 5 | 9 | 354 | 2 | 363 | 6.3e-119 | 428.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61293.t1 | G7JHP2 | 98.3 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 3.7e-205 | 723.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053330 | MS.gene61293 | 0.803966 | 2.71E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene61293 | 0.804892 | 1.74E-49 | -1.69E-46 |
| MS.gene056351 | MS.gene61293 | 0.825748 | 3.96E-54 | -1.69E-46 |
| MS.gene056633 | MS.gene61293 | 0.807229 | 5.60E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene61293 | 0.811253 | 7.68E-51 | -1.69E-46 |
| MS.gene057332 | MS.gene61293 | 0.81096 | 8.89E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene61293 | 0.815762 | 7.83E-52 | -1.69E-46 |
| MS.gene059512 | MS.gene61293 | 0.842741 | 2.15E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61293.t1 | MTR_4g100480 | 98.319 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 0.0 | 731 |
| MS.gene61293.t1 | MTR_2g026715 | 44.951 | 307 | 164 | 3 | 51 | 353 | 14 | 319 | 3.50e-92 | 278 |
| MS.gene61293.t1 | MTR_3g460790 | 50.775 | 258 | 126 | 1 | 91 | 348 | 25 | 281 | 4.89e-89 | 269 |
| MS.gene61293.t1 | MTR_3g082770 | 44.218 | 294 | 140 | 4 | 37 | 328 | 45 | 316 | 3.02e-86 | 264 |
| MS.gene61293.t1 | MTR_4g133945 | 48.235 | 255 | 131 | 1 | 91 | 344 | 12 | 266 | 2.26e-85 | 259 |
| MS.gene61293.t1 | MTR_8g091995 | 50.198 | 253 | 124 | 2 | 96 | 348 | 23 | 273 | 8.91e-84 | 256 |
| MS.gene61293.t1 | MTR_3g460790 | 56.281 | 199 | 86 | 1 | 91 | 289 | 25 | 222 | 1.03e-75 | 234 |
| MS.gene61293.t1 | MTR_2g026715 | 50.000 | 178 | 88 | 1 | 76 | 253 | 56 | 232 | 7.63e-61 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61293.t1 | AT5G47240 | 59.392 | 362 | 131 | 5 | 9 | 354 | 2 | 363 | 1.47e-152 | 434 |
| MS.gene61293.t1 | AT5G47240 | 54.987 | 391 | 131 | 6 | 9 | 354 | 2 | 392 | 1.64e-145 | 417 |
| MS.gene61293.t1 | AT4G25434 | 48.627 | 255 | 130 | 1 | 91 | 345 | 19 | 272 | 1.22e-85 | 261 |
| MS.gene61293.t1 | AT5G47650 | 49.225 | 258 | 128 | 2 | 91 | 348 | 19 | 273 | 2.67e-85 | 259 |
| MS.gene61293.t1 | AT5G47650 | 49.225 | 258 | 128 | 2 | 91 | 348 | 19 | 273 | 2.67e-85 | 259 |
| MS.gene61293.t1 | AT5G47650 | 49.225 | 258 | 128 | 2 | 91 | 348 | 19 | 273 | 2.67e-85 | 259 |
| MS.gene61293.t1 | AT5G47650 | 49.225 | 258 | 128 | 2 | 91 | 348 | 66 | 320 | 1.66e-84 | 259 |
| MS.gene61293.t1 | AT5G47650 | 49.225 | 258 | 128 | 2 | 91 | 348 | 65 | 319 | 1.66e-84 | 259 |
| MS.gene61293.t1 | AT4G25434 | 47.059 | 255 | 129 | 2 | 91 | 345 | 19 | 267 | 2.07e-80 | 247 |
| MS.gene61293.t1 | AT4G25434 | 43.972 | 282 | 130 | 2 | 91 | 345 | 19 | 299 | 5.26e-80 | 247 |
| MS.gene61293.t1 | AT2G04430 | 48.750 | 240 | 119 | 3 | 91 | 326 | 10 | 249 | 1.23e-74 | 233 |
| MS.gene61293.t1 | AT4G25434 | 42.553 | 282 | 129 | 3 | 91 | 345 | 19 | 294 | 1.43e-74 | 233 |
| MS.gene61293.t1 | AT2G04430 | 48.750 | 240 | 119 | 3 | 91 | 326 | 29 | 268 | 2.63e-74 | 232 |
| MS.gene61293.t1 | AT4G25434 | 53.266 | 199 | 92 | 1 | 91 | 289 | 19 | 216 | 2.68e-73 | 227 |
| MS.gene61293.t1 | AT4G12720 | 46.124 | 258 | 135 | 4 | 91 | 346 | 10 | 265 | 4.27e-72 | 226 |
| MS.gene61293.t1 | AT4G12720 | 46.124 | 258 | 135 | 4 | 91 | 346 | 10 | 265 | 4.27e-72 | 226 |
| MS.gene61293.t1 | AT4G12720 | 46.124 | 258 | 135 | 4 | 91 | 346 | 10 | 265 | 4.27e-72 | 226 |
| MS.gene61293.t1 | AT4G25434 | 50.761 | 197 | 97 | 0 | 149 | 345 | 31 | 227 | 3.08e-68 | 214 |
| MS.gene61293.t1 | AT4G25434 | 50.761 | 197 | 97 | 0 | 149 | 345 | 31 | 227 | 3.08e-68 | 214 |
| MS.gene61293.t1 | AT4G25434 | 51.256 | 199 | 91 | 2 | 91 | 289 | 19 | 211 | 7.17e-68 | 213 |
| MS.gene61293.t1 | AT4G25434 | 46.903 | 226 | 92 | 2 | 91 | 289 | 19 | 243 | 1.09e-67 | 213 |
| MS.gene61293.t1 | AT2G04450 | 44.656 | 262 | 140 | 5 | 88 | 346 | 7 | 266 | 1.50e-66 | 212 |
| MS.gene61293.t1 | AT4G12720 | 40.067 | 297 | 134 | 5 | 91 | 345 | 10 | 304 | 4.47e-64 | 207 |
| MS.gene61293.t1 | AT4G25434 | 48.731 | 197 | 96 | 1 | 149 | 345 | 31 | 222 | 9.11e-63 | 200 |
| MS.gene61293.t1 | AT4G12720 | 50.746 | 201 | 96 | 3 | 91 | 289 | 10 | 209 | 1.92e-61 | 196 |
| MS.gene61293.t1 | AT4G25434 | 53.704 | 162 | 74 | 1 | 91 | 252 | 19 | 179 | 9.92e-59 | 190 |
| MS.gene61293.t1 | AT4G25434 | 43.478 | 207 | 90 | 1 | 166 | 345 | 1 | 207 | 2.61e-53 | 175 |
| MS.gene61293.t1 | AT4G25434 | 46.032 | 189 | 74 | 2 | 91 | 252 | 19 | 206 | 3.81e-53 | 176 |
| MS.gene61293.t1 | AT4G12720 | 46.154 | 182 | 95 | 3 | 166 | 345 | 1 | 181 | 2.96e-46 | 156 |
| MS.gene61293.t1 | AT2G04440 | 47.826 | 138 | 71 | 1 | 91 | 227 | 10 | 147 | 1.30e-37 | 134 |
Find 66 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTTCCCATTGTATTAA+TGG | 0.183525 | 8.2:-22576718 | MS.gene61293:CDS |
| TGCCTCAGATGACACTTATT+TGG | 0.255967 | 8.2:-22576782 | MS.gene61293:CDS |
| TGCAGGGAAAGAAGGGAATT+TGG | 0.271776 | 8.2:-22576467 | MS.gene61293:intron |
| GGATTGTGTGGTAACCTATT+TGG | 0.272788 | 8.2:+22576619 | None:intergenic |
| GATATGTGATGTTAACTTAC+TGG | 0.280931 | 8.2:-22575819 | MS.gene61293:CDS |
| CTCCTGCAACTCTTGGCCTT+TGG | 0.301775 | 8.2:-22575513 | MS.gene61293:CDS |
| TTCCAAAGGCCAAGAGTTGC+AGG | 0.325763 | 8.2:+22575511 | None:intergenic |
| TAAATTACCTTGACAGCAAC+TGG | 0.331130 | 8.2:+22576411 | None:intergenic |
| AGAGAAGTGAAGGAAGAAAC+TGG | 0.340232 | 8.2:-22575078 | MS.gene61293:CDS |
| ATGGAATCTTCTTGTATTAG+TGG | 0.340759 | 8.2:+22574614 | None:intergenic |
| TTGTTGAAGTCATAGCATTC+AGG | 0.346192 | 8.2:-22574910 | MS.gene61293:intron |
| TTGAAATTGAAGGAGCAAAA+TGG | 0.347302 | 8.2:-22574664 | MS.gene61293:CDS |
| TTCAAATGTGGACAAAGAAT+TGG | 0.348986 | 8.2:+22577192 | None:intergenic |
| CAAGTAGTTTCCAAGTTTGA+TGG | 0.355833 | 8.2:-22574524 | MS.gene61293:CDS |
| GGAAGCATGCAAGGTCCTTC+AGG | 0.363281 | 8.2:+22575793 | None:intergenic |
| GTCAAAGACGTTATAGTATA+GGG | 0.368106 | 8.2:+22574490 | None:intergenic |
| TGTCAAAGACGTTATAGTAT+AGG | 0.374450 | 8.2:+22574489 | None:intergenic |
| ACAAGATCAGATTGCTCTAT+AGG | 0.380012 | 8.2:+22576435 | None:intergenic |
| GGATTCTCATTGATCCAAAT+AGG | 0.382227 | 8.2:-22576633 | MS.gene61293:CDS |
| AGCATAGATGCAAAGGCATA+TGG | 0.400461 | 8.2:+22576598 | None:intergenic |
| ACTTGATGTGATGCATTTGC+TGG | 0.407708 | 8.2:+22575772 | None:intergenic |
| CACTGTTCTCCTGCAACTCT+TGG | 0.408090 | 8.2:-22575520 | MS.gene61293:CDS |
| GATATCTTTATTGCTCGTCT+TGG | 0.413439 | 8.2:-22574575 | MS.gene61293:CDS |
| GATGCCTTTGATGATGAGTA+TGG | 0.416511 | 8.2:-22576658 | MS.gene61293:CDS |
| ATATCTTTATTGCTCGTCTT+GGG | 0.440305 | 8.2:-22574574 | MS.gene61293:CDS |
| GGCCTTTGGAAAATACCAAC+TGG | 0.454871 | 8.2:-22575499 | MS.gene61293:CDS |
| CAATACCACCATGCAGAGCC+AGG | 0.462871 | 8.2:-22575841 | MS.gene61293:CDS |
| AGTTGATCCATTAATACAAT+GGG | 0.469605 | 8.2:+22576711 | None:intergenic |
| TCTTTGTCCACATTTGAAGT+TGG | 0.473737 | 8.2:-22577187 | MS.gene61293:CDS |
| TAAGTTAACATCACATATCC+TGG | 0.491360 | 8.2:+22575823 | None:intergenic |
| GCATCACATCAAGTCGGAAT+CGG | 0.491928 | 8.2:-22575763 | MS.gene61293:CDS |
| CAGGCAGAGGAGATTTATAC+AGG | 0.497331 | 8.2:-22575108 | MS.gene61293:CDS |
| TTTGTTTATCTCTTTCTCAC+TGG | 0.499015 | 8.2:-22576576 | MS.gene61293:CDS |
| GTGGATGATCTTGAAATTGA+AGG | 0.507225 | 8.2:-22574674 | MS.gene61293:CDS |
| TCTTGTTCCAGTTGCTGTCA+AGG | 0.509061 | 8.2:-22576418 | MS.gene61293:intron |
| GAGAAGTGAAGGAAGAAACT+GGG | 0.516226 | 8.2:-22575077 | MS.gene61293:CDS |
| AGGAGCTGTAAGAGAAGTGA+AGG | 0.519985 | 8.2:-22575088 | MS.gene61293:CDS |
| AAGTTGATCCATTAATACAA+TGG | 0.544572 | 8.2:+22576710 | None:intergenic |
| TAAACAAAGCATAGATGCAA+AGG | 0.547763 | 8.2:+22576591 | None:intergenic |
| ATCTACAATCTTCTTGAACA+TGG | 0.556041 | 8.2:+22574595 | None:intergenic |
| TCTTTCTCACTGGAAAAGAA+TGG | 0.560278 | 8.2:-22576566 | MS.gene61293:intron |
| AATGATGATTCCAACTGTGT+TGG | 0.569974 | 8.2:-22574467 | MS.gene61293:CDS |
| CCCTCCATACTCATCATCAA+AGG | 0.576216 | 8.2:+22576654 | None:intergenic |
| ACCTCATGAATGAATCCAGT+TGG | 0.579034 | 8.2:+22575484 | None:intergenic |
| CAAATTTGTAAAGGTGCTTG+TGG | 0.584011 | 8.2:-22575554 | MS.gene61293:intron |
| GCATTTGCTGGAAGCATGCA+AGG | 0.587186 | 8.2:+22575784 | None:intergenic |
| TCACATATCCTGGCTCTGCA+TGG | 0.590682 | 8.2:+22575833 | None:intergenic |
| TTAACTTACTGGATTCCTGA+AGG | 0.599287 | 8.2:-22575808 | MS.gene61293:CDS |
| AGAAGTGAAGGAAGAAACTG+GGG | 0.603388 | 8.2:-22575076 | MS.gene61293:intron |
| CCTCTGCGGCACTTGAACTG+AGG | 0.612710 | 8.2:+22577106 | None:intergenic |
| TCACATCAAGTCGGAATCGG+AGG | 0.616036 | 8.2:-22575760 | MS.gene61293:CDS |
| CCTAAAACTTGTGAACAAAG+TGG | 0.620183 | 8.2:+22577153 | None:intergenic |
| CCTTTGATGATGAGTATGGA+GGG | 0.620814 | 8.2:-22576654 | MS.gene61293:CDS |
| ACAGTGATCGTAGATGATAG+TGG | 0.623914 | 8.2:+22574695 | None:intergenic |
| CCTCAGTTCAAGTGCCGCAG+AGG | 0.632039 | 8.2:-22577106 | MS.gene61293:intron |
| TGCTCTACAAACTCAACCAG+TGG | 0.632663 | 8.2:+22574638 | None:intergenic |
| AGGAGCAAAATGGATGCCAC+TGG | 0.654186 | 8.2:-22574654 | MS.gene61293:CDS |
| CATATCCTGGCTCTGCATGG+TGG | 0.655970 | 8.2:+22575836 | None:intergenic |
| TTCTAGGCATGTACACAATG+TGG | 0.663546 | 8.2:-22574759 | MS.gene61293:intron |
| GCAAATGCATCACATCAAGT+CGG | 0.666360 | 8.2:-22575769 | MS.gene61293:CDS |
| GCCTTTGATGATGAGTATGG+AGG | 0.668533 | 8.2:-22576655 | MS.gene61293:CDS |
| CGTCTTGGGAAACGTTACTG+TGG | 0.668940 | 8.2:-22574560 | MS.gene61293:CDS |
| ACCAACTGGATTCATTCATG+AGG | 0.669787 | 8.2:-22575485 | MS.gene61293:intron |
| TGCCAAATAAGTGTCATCTG+AGG | 0.672505 | 8.2:+22576780 | None:intergenic |
| GCAAAGGCATATGGATTGTG+TGG | 0.674954 | 8.2:+22576607 | None:intergenic |
| ACTATCATCTACGATCACTG+TGG | 0.741537 | 8.2:-22574693 | MS.gene61293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGAACTTATTCATA+AGG | - | chr8.2:22576660-22576679 | MS.gene61293:CDS | 15.0% |
| !!! | CTTTATTTTATTCAATCTTA+TGG | - | chr8.2:22576381-22576400 | MS.gene61293:intron | 15.0% |
| !!! | TTTTATTTACATCAAAACTT+AGG | + | chr8.2:22576638-22576657 | None:intergenic | 15.0% |
| !! | AATTTATTCGTCTATTTGTT+GGG | - | chr8.2:22575533-22575552 | MS.gene61293:CDS | 20.0% |
| !! | ACATAATGACATTACATAAA+CGG | + | chr8.2:22576512-22576531 | None:intergenic | 20.0% |
| !! | AGCTGATATTTGAATTTAAT+TGG | - | chr8.2:22574776-22574795 | MS.gene61293:intron | 20.0% |
| !! | CAATTTATGTTTAAATACCA+CGG | - | chr8.2:22576415-22576434 | MS.gene61293:intron | 20.0% |
| !! | TTCTTCTAACAAATTTGTAA+AGG | - | chr8.2:22576111-22576130 | MS.gene61293:intron | 20.0% |
| !! | TTCTTTATTAATAGAAATGC+AGG | + | chr8.2:22575293-22575312 | None:intergenic | 20.0% |
| !! | TTGGTTATATTAATTGTCTT+AGG | - | chr8.2:22575431-22575450 | MS.gene61293:intron | 20.0% |
| !!! | AGTTTAACATCTTTAATTTC+AGG | - | chr8.2:22574848-22574867 | MS.gene61293:intron | 20.0% |
| !!! | CAAATTTGATCAAATTTTCT+AGG | - | chr8.2:22575694-22575713 | MS.gene61293:intron | 20.0% |
| !!! | GTTTAACATCTTTAATTTCA+GGG | - | chr8.2:22574849-22574868 | MS.gene61293:intron | 20.0% |
| !!! | TAACTTGTAATTACGTTAAA+CGG | + | chr8.2:22575393-22575412 | None:intergenic | 20.0% |
| ! | AATGTATAAAGTGTATCCTA+CGG | - | chr8.2:22575457-22575476 | MS.gene61293:intron | 25.0% |
| ! | ACAATGCTTGTAAAACAAAA+AGG | - | chr8.2:22575583-22575602 | MS.gene61293:intron | 25.0% |
| ! | AGCTTATATGAGAATCTAAT+TGG | + | chr8.2:22574605-22574624 | None:intergenic | 25.0% |
| ! | AGTTGATCCATTAATACAAT+GGG | + | chr8.2:22574966-22574985 | None:intergenic | 25.0% |
| ! | ATATCATTATCATGCTATGT+TGG | + | chr8.2:22575997-22576016 | None:intergenic | 25.0% |
| ! | ATCTGTTTACCATTGAATAA+GGG | + | chr8.2:22576281-22576300 | None:intergenic | 25.0% |
| ! | ATTGAAAACCTAACATTATG+TGG | - | chr8.2:22575181-22575200 | MS.gene61293:intron | 25.0% |
| ! | CAATTTATTCGTCTATTTGT+TGG | - | chr8.2:22575532-22575551 | MS.gene61293:CDS | 25.0% |
| ! | CTAAAATGTTAAAGAGAATG+TGG | - | chr8.2:22574811-22574830 | MS.gene61293:intron | 25.0% |
| ! | TATTCATAAGGTTACATGAT+AGG | - | chr8.2:22576672-22576691 | MS.gene61293:CDS | 25.0% |
| ! | TCAATCAAAACAATGAAGTA+TGG | - | chr8.2:22575945-22575964 | MS.gene61293:intron | 25.0% |
| ! | TGAACTTCTTGATAAATTCT+AGG | - | chr8.2:22576899-22576918 | MS.gene61293:intron | 25.0% |
| !! | AAATTTTCCAACTTCAAATG+TGG | + | chr8.2:22574497-22574516 | None:intergenic | 25.0% |
| !! | AAGTTGATCCATTAATACAA+TGG | + | chr8.2:22574967-22574986 | None:intergenic | 25.0% |
| !! | ATCTAAAGTCATGGTTAATA+TGG | - | chr8.2:22574653-22574672 | MS.gene61293:CDS | 25.0% |
| !! | ATTTGGTTTATTGAGCATTT+AGG | + | chr8.2:22576237-22576256 | None:intergenic | 25.0% |
| !! | TTGCATAAAATCTAAAGTCA+TGG | - | chr8.2:22574644-22574663 | MS.gene61293:CDS | 25.0% |
| ACAAGTTCCCATTGTATTAA+TGG | - | chr8.2:22574956-22574975 | MS.gene61293:intron | 30.0% | |
| AGAAACATTCACAAAATGAC+TGG | - | chr8.2:22575671-22575690 | MS.gene61293:intron | 30.0% | |
| AGACTAAACTCCTTATTATC+AGG | + | chr8.2:22574723-22574742 | None:intergenic | 30.0% | |
| ATATCTTTATTGCTCGTCTT+GGG | - | chr8.2:22577100-22577119 | MS.gene61293:intron | 30.0% | |
| ATCTACAATCTTCTTGAACA+TGG | + | chr8.2:22577082-22577101 | None:intergenic | 30.0% | |
| ATGGAATCTTCTTGTATTAG+TGG | + | chr8.2:22577063-22577082 | None:intergenic | 30.0% | |
| CATCTGTTTACCATTGAATA+AGG | + | chr8.2:22576282-22576301 | None:intergenic | 30.0% | |
| GACTAAACTCCTTATTATCA+GGG | + | chr8.2:22574722-22574741 | None:intergenic | 30.0% | |
| GATATGTGATGTTAACTTAC+TGG | - | chr8.2:22575855-22575874 | MS.gene61293:intron | 30.0% | |
| GTCAAAGACGTTATAGTATA+GGG | + | chr8.2:22577187-22577206 | None:intergenic | 30.0% | |
| TAAACAAAGCATAGATGCAA+AGG | + | chr8.2:22575086-22575105 | None:intergenic | 30.0% | |
| TAAGTTAACATCACATATCC+TGG | + | chr8.2:22575854-22575873 | None:intergenic | 30.0% | |
| TGTCAAAGACGTTATAGTAT+AGG | + | chr8.2:22577188-22577207 | None:intergenic | 30.0% | |
| TGTTCTAACAGCTTTCTATT+TGG | + | chr8.2:22576254-22576273 | None:intergenic | 30.0% | |
| TTAAAGAGAATGTGGAACAT+GGG | - | chr8.2:22574819-22574838 | MS.gene61293:intron | 30.0% | |
| TTCAAATGTGGACAAAGAAT+TGG | + | chr8.2:22574485-22574504 | None:intergenic | 30.0% | |
| TTGAAATTGAAGGAGCAAAA+TGG | - | chr8.2:22577010-22577029 | MS.gene61293:intron | 30.0% | |
| TTTCACTAGGATAATACACA+TGG | + | chr8.2:22575147-22575166 | None:intergenic | 30.0% | |
| TTTGTTTATCTCTTTCTCAC+TGG | - | chr8.2:22575098-22575117 | MS.gene61293:CDS | 30.0% | |
| ! | AGTAATTTTGCCATCAAACT+TGG | + | chr8.2:22577163-22577182 | None:intergenic | 30.0% |
| ! | AGTTATGATTAGTTGCAAGT+TGG | - | chr8.2:22575412-22575431 | MS.gene61293:intron | 30.0% |
| ! | GAATTTCTTGATGACATGAT+TGG | + | chr8.2:22576795-22576814 | None:intergenic | 30.0% |
| ! | TATTTTGCAAAAGCTTTGCA+AGG | - | chr8.2:22576014-22576033 | MS.gene61293:intron | 30.0% |
| !! | TAACATTATGTGGTTTTGCA+GGG | - | chr8.2:22575191-22575210 | MS.gene61293:intron | 30.0% |
| !!! | ACAAGTTTTAGGCACAAATT+TGG | - | chr8.2:22574532-22574551 | MS.gene61293:CDS | 30.0% |
| AAAACTTGATACATGACCGT+AGG | + | chr8.2:22575476-22575495 | None:intergenic | 35.0% | |
| AATGATGATTCCAACTGTGT+TGG | - | chr8.2:22577207-22577226 | MS.gene61293:CDS | 35.0% | |
| ACAAGATCAGATTGCTCTAT+AGG | + | chr8.2:22575242-22575261 | None:intergenic | 35.0% | |
| CAAACATCATTGCGTGATTT+AGG | + | chr8.2:22575351-22575370 | None:intergenic | 35.0% | |
| CAAGTAGTTTCCAAGTTTGA+TGG | - | chr8.2:22577150-22577169 | MS.gene61293:CDS | 35.0% | |
| CCTAAAACTTGTGAACAAAG+TGG | + | chr8.2:22574524-22574543 | None:intergenic | 35.0% | |
| CTGCAAAACCACATAATGTT+AGG | + | chr8.2:22575192-22575211 | None:intergenic | 35.0% | |
| CTTATGTTGCGTACAGTTTA+GGG | + | chr8.2:22576459-22576478 | None:intergenic | 35.0% | |
| GAACAGAAACCCTTATTCAA+TGG | - | chr8.2:22576269-22576288 | MS.gene61293:intron | 35.0% | |
| GATATCTTTATTGCTCGTCT+TGG | - | chr8.2:22577099-22577118 | MS.gene61293:intron | 35.0% | |
| GGATTCTCATTGATCCAAAT+AGG | - | chr8.2:22575041-22575060 | MS.gene61293:intron | 35.0% | |
| GTGGATGATCTTGAAATTGA+AGG | - | chr8.2:22577000-22577019 | MS.gene61293:intron | 35.0% | |
| GTTAAAGAGAATGTGGAACA+TGG | - | chr8.2:22574818-22574837 | MS.gene61293:intron | 35.0% | |
| TAAATTACCTTGACAGCAAC+TGG | + | chr8.2:22575266-22575285 | None:intergenic | 35.0% | |
| TAATAAGGAGTTTAGTCTCG+AGG | - | chr8.2:22574725-22574744 | MS.gene61293:CDS | 35.0% | |
| TCACTTGTGTGAATTATCTC+AGG | - | chr8.2:22576547-22576566 | MS.gene61293:intron | 35.0% | |
| TCTTATGTTGCGTACAGTTT+AGG | + | chr8.2:22576460-22576479 | None:intergenic | 35.0% | |
| TCTTTCTCACTGGAAAAGAA+TGG | - | chr8.2:22575108-22575127 | MS.gene61293:CDS | 35.0% | |
| TTAACTTACTGGATTCCTGA+AGG | - | chr8.2:22575866-22575885 | MS.gene61293:intron | 35.0% | |
| TTAGGGGAAATCATGTAAAC+TGG | + | chr8.2:22576442-22576461 | None:intergenic | 35.0% | |
| TTATGTTGCGTACAGTTTAG+GGG | + | chr8.2:22576458-22576477 | None:intergenic | 35.0% | |
| TTGTTGAAGTCATAGCATTC+AGG | - | chr8.2:22576764-22576783 | MS.gene61293:CDS | 35.0% | |
| ! | CCACTTTGTTCACAAGTTTT+AGG | - | chr8.2:22574521-22574540 | MS.gene61293:CDS | 35.0% |
| ! | TCTTTGTCCACATTTGAAGT+TGG | - | chr8.2:22574487-22574506 | MS.gene61293:CDS | 35.0% |
| ! | TGAGGTAACTAGACTCATTT+TGG | - | chr8.2:22575787-22575806 | MS.gene61293:CDS | 35.0% |
| !! | AAAACAAAAAGGCACCATGT+TGG | - | chr8.2:22575594-22575613 | MS.gene61293:intron | 35.0% |
| !! | ATCCAGTTGGTATTTTCCAA+AGG | + | chr8.2:22576180-22576199 | None:intergenic | 35.0% |
| !! | CAAATTTGTAAAGGTGCTTG+TGG | - | chr8.2:22576120-22576139 | MS.gene61293:intron | 35.0% |
| !! | CTAACATTATGTGGTTTTGC+AGG | - | chr8.2:22575190-22575209 | MS.gene61293:intron | 35.0% |
| !!! | ATTGAACTTTTTCGCCAACA+TGG | + | chr8.2:22575611-22575630 | None:intergenic | 35.0% |
| AAATCATGTAAACTGGACCG+TGG | + | chr8.2:22576435-22576454 | None:intergenic | 40.0% | |
| ACAGTGATCGTAGATGATAG+TGG | + | chr8.2:22576982-22577001 | None:intergenic | 40.0% | |
| ACCAACTGGATTCATTCATG+AGG | - | chr8.2:22576189-22576208 | MS.gene61293:intron | 40.0% | |
| ACCTCATGAATGAATCCAGT+TGG | + | chr8.2:22576193-22576212 | None:intergenic | 40.0% | |
| ACTATCATCTACGATCACTG+TGG | - | chr8.2:22576981-22577000 | MS.gene61293:intron | 40.0% | |
| ACTTGATGTGATGCATTTGC+TGG | + | chr8.2:22575905-22575924 | None:intergenic | 40.0% | |
| AGAAGTGAAGGAAGAAACTG+GGG | - | chr8.2:22576598-22576617 | MS.gene61293:CDS | 40.0% | |
| AGAGAAGTGAAGGAAGAAAC+TGG | - | chr8.2:22576596-22576615 | MS.gene61293:CDS | 40.0% | |
| CATTAACTCTCCGATTCTCA+GGG | - | chr8.2:22574690-22574709 | MS.gene61293:CDS | 40.0% | |
| GAGAAGTGAAGGAAGAAACT+GGG | - | chr8.2:22576597-22576616 | MS.gene61293:CDS | 40.0% | |
| GCAAATGCATCACATCAAGT+CGG | - | chr8.2:22575905-22575924 | MS.gene61293:intron | 40.0% | |
| GGATTGTGTGGTAACCTATT+TGG | + | chr8.2:22575058-22575077 | None:intergenic | 40.0% | |
| GGGAAATGACCCTGATAATA+AGG | - | chr8.2:22574710-22574729 | MS.gene61293:CDS | 40.0% | |
| TCATTAACTCTCCGATTCTC+AGG | - | chr8.2:22574689-22574708 | MS.gene61293:CDS | 40.0% | |
| TGCCAAATAAGTGTCATCTG+AGG | + | chr8.2:22574897-22574916 | None:intergenic | 40.0% | |
| TGCCTCAGATGACACTTATT+TGG | - | chr8.2:22574892-22574911 | MS.gene61293:intron | 40.0% | |
| TGCTAGATGATGCTTTCACT+AGG | + | chr8.2:22575160-22575179 | None:intergenic | 40.0% | |
| TTCTAGGCATGTACACAATG+TGG | - | chr8.2:22576915-22576934 | MS.gene61293:intron | 40.0% | |
| ! | AGCATAGATGCAAAGGCATA+TGG | + | chr8.2:22575079-22575098 | None:intergenic | 40.0% |
| !! | CCTTTGATGATGAGTATGGA+GGG | - | chr8.2:22575020-22575039 | MS.gene61293:intron | 40.0% |
| !! | GAAGTGTTGCTGAATCTATG+AGG | - | chr8.2:22575769-22575788 | MS.gene61293:CDS | 40.0% |
| !! | GATGCCTTTGATGATGAGTA+TGG | - | chr8.2:22575016-22575035 | MS.gene61293:intron | 40.0% |
| !!! | TGGCTTTTTAGTTACCTCTG+CGG | + | chr8.2:22574585-22574604 | None:intergenic | 40.0% |
| AGGAGCTGTAAGAGAAGTGA+AGG | - | chr8.2:22576586-22576605 | MS.gene61293:CDS | 45.0% | |
| AGGGTCATTTCCCTGAGAAT+CGG | + | chr8.2:22574703-22574722 | None:intergenic | 45.0% | |
| CAGGCAGAGGAGATTTATAC+AGG | - | chr8.2:22576566-22576585 | MS.gene61293:intron | 45.0% | |
| CCCTCCATACTCATCATCAA+AGG | + | chr8.2:22575023-22575042 | None:intergenic | 45.0% | |
| GCATCACATCAAGTCGGAAT+CGG | - | chr8.2:22575911-22575930 | MS.gene61293:intron | 45.0% | |
| GTGTGAATTATCTCAGGCAG+AGG | - | chr8.2:22576553-22576572 | MS.gene61293:intron | 45.0% | |
| TCTTGTTCCAGTTGCTGTCA+AGG | - | chr8.2:22575256-22575275 | MS.gene61293:intron | 45.0% | |
| TGCAGGGAAAGAAGGGAATT+TGG | - | chr8.2:22575207-22575226 | MS.gene61293:intron | 45.0% | |
| TGCTCTACAAACTCAACCAG+TGG | + | chr8.2:22577039-22577058 | None:intergenic | 45.0% | |
| ! | CGTCTATTTGTTGGGCTCTA+CGG | - | chr8.2:22575541-22575560 | MS.gene61293:CDS | 45.0% |
| ! | GCAAAGGCATATGGATTGTG+TGG | + | chr8.2:22575070-22575089 | None:intergenic | 45.0% |
| ! | GGCCTTTGGAAAATACCAAC+TGG | - | chr8.2:22576175-22576194 | MS.gene61293:intron | 45.0% |
| !! | CATTTTGGTCTCACTGTCTC+AGG | - | chr8.2:22575802-22575821 | MS.gene61293:CDS | 45.0% |
| !! | GCCTTTGATGATGAGTATGG+AGG | - | chr8.2:22575019-22575038 | MS.gene61293:intron | 45.0% |
| !! | GTGGTTTTGCAGGGAAAGAA+GGG | - | chr8.2:22575200-22575219 | MS.gene61293:intron | 45.0% |
| !! | TGTGGTTTTGCAGGGAAAGA+AGG | - | chr8.2:22575199-22575218 | MS.gene61293:intron | 45.0% |
| AGGAGCAAAATGGATGCCAC+TGG | - | chr8.2:22577020-22577039 | MS.gene61293:intron | 50.0% | |
| CACTGTTCTCCTGCAACTCT+TGG | - | chr8.2:22576154-22576173 | MS.gene61293:intron | 50.0% | |
| CGTCTTGGGAAACGTTACTG+TGG | - | chr8.2:22577114-22577133 | MS.gene61293:CDS | 50.0% | |
| TCACATCAAGTCGGAATCGG+AGG | - | chr8.2:22575914-22575933 | MS.gene61293:intron | 50.0% | |
| TTCCAAAGGCCAAGAGTTGC+AGG | + | chr8.2:22576166-22576185 | None:intergenic | 50.0% | |
| TTGGTCTCACTGTCTCAGGA+AGG | - | chr8.2:22575806-22575825 | MS.gene61293:CDS | 50.0% | |
| ! | GCATTTGCTGGAAGCATGCA+AGG | + | chr8.2:22575893-22575912 | None:intergenic | 50.0% |
| !! | TCACATATCCTGGCTCTGCA+TGG | + | chr8.2:22575844-22575863 | None:intergenic | 50.0% |
| CAATACCACCATGCAGAGCC+AGG | - | chr8.2:22575833-22575852 | MS.gene61293:CDS | 55.0% | |
| ! | CTCCTGCAACTCTTGGCCTT+TGG | - | chr8.2:22576161-22576180 | MS.gene61293:intron | 55.0% |
| ! | GGAAGCATGCAAGGTCCTTC+AGG | + | chr8.2:22575884-22575903 | None:intergenic | 55.0% |
| !! | CATATCCTGGCTCTGCATGG+TGG | + | chr8.2:22575841-22575860 | None:intergenic | 55.0% |
| CCTCTGCGGCACTTGAACTG+AGG | + | chr8.2:22574571-22574590 | None:intergenic | 60.0% | |
| ! | CCTCAGTTCAAGTGCCGCAG+AGG | - | chr8.2:22574568-22574587 | MS.gene61293:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 22574460 | 22577236 | 22574460 | ID=MS.gene61293 |
| chr8.2 | mRNA | 22574460 | 22577236 | 22574460 | ID=MS.gene61293.t1;Parent=MS.gene61293 |
| chr8.2 | exon | 22577107 | 22577236 | 22577107 | ID=MS.gene61293.t1.exon1;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22577107 | 22577236 | 22577107 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| chr8.2 | exon | 22576567 | 22576826 | 22576567 | ID=MS.gene61293.t1.exon2;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22576567 | 22576826 | 22576567 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| chr8.2 | exon | 22576419 | 22576484 | 22576419 | ID=MS.gene61293.t1.exon3;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22576419 | 22576484 | 22576419 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| chr8.2 | exon | 22575735 | 22575872 | 22575735 | ID=MS.gene61293.t1.exon4;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22575735 | 22575872 | 22575735 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| chr8.2 | exon | 22575486 | 22575563 | 22575486 | ID=MS.gene61293.t1.exon5;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22575486 | 22575563 | 22575486 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| chr8.2 | exon | 22575077 | 22575127 | 22575077 | ID=MS.gene61293.t1.exon6;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22575077 | 22575127 | 22575077 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| chr8.2 | exon | 22574911 | 22574945 | 22574911 | ID=MS.gene61293.t1.exon7;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22574911 | 22574945 | 22574911 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| chr8.2 | exon | 22574460 | 22574775 | 22574460 | ID=MS.gene61293.t1.exon8;Parent=MS.gene61293.t1 |
| chr8.2 | CDS | 22574460 | 22574775 | 22574460 | ID=cds.MS.gene61293.t1;Parent=MS.gene61293.t1 |
| Gene Sequence |
| Protein sequence |
