AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61320.t1 MTR_2g102370 93.681 364 22 1 1 363 1 364 0.0 705
MS.gene61320.t1 MTR_4g011900 59.504 363 142 1 1 363 3 360 2.94e-161 456
MS.gene61320.t1 MTR_2g102355 88.525 122 14 0 175 296 46 167 4.56e-75 230
MS.gene61320.t1 MTR_8g085650 36.240 367 200 8 1 363 5 341 6.36e-62 202
MS.gene61320.t1 MTR_7g095220 27.341 267 156 8 2 260 3 239 3.37e-20 90.9
MS.gene61320.t1 MTR_8g085600 26.821 302 179 11 3 296 77 344 3.16e-15 77.0
MS.gene61320.t1 MTR_8g080370 27.074 229 142 7 3 229 51 256 2.09e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61320.t1 AT1G80440 47.568 370 171 6 1 363 1 354 1.23e-119 350
MS.gene61320.t1 AT1G15670 48.087 366 180 4 1 363 1 359 1.41e-119 350
MS.gene61320.t1 AT2G44130 33.677 291 155 7 2 267 18 295 1.30e-41 150
MS.gene61320.t1 AT3G59940 28.928 401 228 11 2 352 14 407 7.34e-40 146
MS.gene61320.t1 AT3G63220 25.378 331 196 11 3 322 4 294 5.53e-19 87.4
MS.gene61320.t1 AT3G63220 25.378 331 196 11 3 322 11 301 5.88e-19 87.4
MS.gene61320.t1 AT3G63220 25.378 331 196 11 3 322 11 301 5.88e-19 87.4
MS.gene61320.t1 AT1G67480 29.237 236 128 8 3 229 39 244 2.45e-13 70.9
MS.gene61320.t1 AT1G67480 29.237 236 128 8 3 229 39 244 2.45e-13 70.9
MS.gene61320.t1 AT1G67480 29.237 236 128 8 3 229 39 244 2.45e-13 70.9

Find 0 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAAACTAAATGTAT+TGG + 15228:16762-16781 MS.gene61320:CDS 10.0%
!!! AATACATTTAGTTTATAAAT+TGG - 15228:16763-16782 MS.gene61320:intergenic 10.0%
!!! ATACATTTAGTTTATAAATT+GGG - 15228:16762-16781 MS.gene61320:intergenic 10.0%
!!! ATAATTTTTTATCTGCTACG+TGG + 15228:16941-16960 MS.gene61320:CDS 25.0%
!!! GCTTTTTTCTGAATCAAATT+TGG - 15228:16710-16729 MS.gene61320:intergenic 25.0%
AATGTATTGGAAACTGAAAC+AGG + 15228:16775-16794 MS.gene61320:CDS 30.0%
AGAAGAATGTACATGTGTAA+GGG + 15228:17351-17370 MS.gene61320:CDS 30.0%
GATTCAGAAAAAAGCAAAAC+CGG + 15228:16715-16734 MS.gene61320:CDS 30.0%
TTCATGGAAAGCTTCAAATT+CGG + 15228:16909-16928 MS.gene61320:CDS 30.0%
! AAAAAGCAAAACCGGTTTAT+TGG + 15228:16723-16742 MS.gene61320:CDS 30.0%
! CAGATGCATTGTTATTGATT+GGG + 15228:17466-17485 MS.gene61320:CDS 30.0%
AGTTTCATACCAGGAATTTC+CGG + 15228:16576-16595 MS.gene61320:CDS 35.0%
GAAAACCCAGAAAATTTCAC+CGG + 15228:17558-17577 MS.gene61320:CDS 35.0%
GAGAAGAATGTACATGTGTA+AGG + 15228:17350-17369 MS.gene61320:CDS 35.0%
TCATGAAAGAATGGTCTATG+TGG + 15228:17020-17039 MS.gene61320:CDS 35.0%
TGCATCAGATCATGAAAGAA+TGG + 15228:17011-17030 MS.gene61320:CDS 35.0%
TGGAAACTGAAACAGGTATT+TGG + 15228:16782-16801 MS.gene61320:CDS 35.0%
TTGAAGCTTTCCATGAATCA+GGG - 15228:16906-16925 MS.gene61320:intergenic 35.0%
TTGTGTAGATGGTTGTGAAT+TGG + 15228:17326-17345 MS.gene61320:CDS 35.0%
! ATAAGGAATGTTGCTTGTGT+GGG + 15228:17435-17454 MS.gene61320:CDS 35.0%
! GCAGATGCATTGTTATTGAT+TGG + 15228:17465-17484 MS.gene61320:CDS 35.0%
! TGTAAGATAGTGTTTTGTGC+CGG + 15228:17150-17169 MS.gene61320:CDS 35.0%
! TGTTATTGATTGGGTCTAGT+GGG + 15228:17475-17494 MS.gene61320:CDS 35.0%
! TTGTTATTGATTGGGTCTAG+TGG + 15228:17474-17493 MS.gene61320:CDS 35.0%
! TTTGAAGCTTTCCATGAATC+AGG - 15228:16907-16926 MS.gene61320:intergenic 35.0%
!!! ACCCTTGTTTTGTCAAATTG+CGG + 15228:16843-16862 MS.gene61320:CDS 35.0%
AAAAGCAACCAGATTGAACG+TGG - 15228:17584-17603 MS.gene61319:intergenic 40.0%
ACCCGCAATTTGACAAAACA+AGG - 15228:16848-16867 MS.gene61320:intergenic 40.0%
AGGGTATGATCTAGTTGTCA+TGG + 15228:16870-16889 MS.gene61320:CDS 40.0%
ATCAAATTTGGACTGAACCG+TGG - 15228:16698-16717 MS.gene61320:intergenic 40.0%
CCCGCAATTTGACAAAACAA+GGG - 15228:16847-16866 MS.gene61320:intergenic 40.0%
GCACAAGAGAAAAATGTGCA+GGG - 15228:16994-17013 MS.gene61320:intergenic 40.0%
GGGTAACCCTTCACTTAATT+CGG - 15228:16827-16846 MS.gene61320:intergenic 40.0%
GGGTATGATCTAGTTGTCAT+GGG + 15228:16871-16890 MS.gene61320:CDS 40.0%
GGGTTTGGAGAACCTTATAT+GGG + 15228:17495-17514 MS.gene61320:CDS 40.0%
GGTAACCCTTCACTTAATTC+GGG - 15228:16826-16845 MS.gene61320:intergenic 40.0%
TACTCCAAACACCATTCTTC+AGG - 15228:17533-17552 MS.gene61320:intergenic 40.0%
TATGATCTAGTTGTCATGGG+AGG + 15228:16874-16893 MS.gene61320:CDS 40.0%
TCCAACACAAAGCCCATATA+AGG - 15228:17510-17529 MS.gene61320:intergenic 40.0%
TGCACAAGAGAAAAATGTGC+AGG - 15228:16995-17014 MS.gene61320:intergenic 40.0%
TGGGTTTGGAGAACCTTATA+TGG + 15228:17494-17513 MS.gene61320:CDS 40.0%
TTTGTCAAATTGCGGGTGTA+GGG + 15228:16851-16870 MS.gene61320:CDS 40.0%
TTTGTGTTGGACCTGAAGAA+TGG + 15228:17519-17538 MS.gene61320:CDS 40.0%
! ACCTTATATGGGCTTTGTGT+TGG + 15228:17506-17525 MS.gene61320:CDS 40.0%
! AGTTGTTGGTGGATATCGTA+CGG + 15228:17197-17216 MS.gene61320:CDS 40.0%
! GATAAGGAATGTTGCTTGTG+TGG + 15228:17434-17453 MS.gene61320:CDS 40.0%
! TTTGGTTCGAGTTTCATACC+AGG + 15228:16567-16586 MS.gene61320:CDS 40.0%
! TTTTGTCAAATTGCGGGTGT+AGG + 15228:16850-16869 MS.gene61320:CDS 40.0%
!!! CCCTTGTTTTGTCAAATTGC+GGG + 15228:16844-16863 MS.gene61320:CDS 40.0%
!!! CGTTCAATCTGGTTGCTTTT+TGG + 15228:17584-17603 MS.gene61320:CDS 40.0%
ACGATGTGGCAAATGATGTG+TGG + 15228:17091-17110 MS.gene61320:CDS 45.0%
ATCTAGTTGTCATGGGAGGA+TGG + 15228:16878-16897 MS.gene61320:CDS 45.0%
ATGGGACCCGAATTAAGTGA+AGG + 15228:16817-16836 MS.gene61320:CDS 45.0%
CAACCATCTACACAAGTCCT+TGG - 15228:17321-17340 MS.gene61320:intergenic 45.0%
GAAAGAATGGTCTATGTGGC+AGG + 15228:17024-17043 MS.gene61320:CDS 45.0%
GATATCGTACGGAGATGCAA+GGG + 15228:17208-17227 MS.gene61320:CDS 45.0%
GCAAACAGAGATTCAAACGC+CGG + 15228:16624-16643 MS.gene61320:CDS 45.0%
GCAACATTCCTTATCTCCCT+AGG - 15228:17429-17448 MS.gene61320:intergenic 45.0%
GTCAGCATTTGCTTACGATG+TGG + 15228:17077-17096 MS.gene61320:CDS 45.0%
TACACAAGTCCTTGGACATG+TGG - 15228:17313-17332 MS.gene61320:intergenic 45.0%
TCACTTAATTCGGGTCCCAT+TGG - 15228:16817-16836 MS.gene61320:intergenic 45.0%
TCTAGTTGTCATGGGAGGAT+GGG + 15228:16879-16898 MS.gene61320:CDS 45.0%
TCTGGCACGATCAAAGTTGT+TGG + 15228:17183-17202 MS.gene61320:CDS 45.0%
TGCTCAGAAAATCCTAGCCA+CGG + 15228:16678-16697 MS.gene61320:CDS 45.0%
TGGACCTGAAGAATGGTGTT+TGG + 15228:17526-17545 MS.gene61320:CDS 45.0%
TGGGACCCGAATTAAGTGAA+GGG + 15228:16818-16837 MS.gene61320:CDS 45.0%
TGTCCAAGGACTTGTGTAGA+TGG + 15228:17315-17334 MS.gene61320:CDS 45.0%
TTCATACCAGGAATTTCCGG+CGG + 15228:16579-16598 MS.gene61320:CDS 45.0%
! ATTTGGAGCGAGTTGCCAAT+GGG + 15228:16799-16818 MS.gene61320:CDS 45.0%
! CGCTGCTTTAGCCAATAAAC+CGG - 15228:16737-16756 MS.gene61320:intergenic 45.0%
! TATTTGGAGCGAGTTGCCAA+TGG + 15228:16798-16817 MS.gene61320:CDS 45.0%
!! AGACATAGCACGAGAGTGTT+TGG + 15228:16549-16568 MS.gene61320:CDS 45.0%
!! TTGATTGGGTCTAGTGGGTT+TGG + 15228:17480-17499 MS.gene61320:CDS 45.0%
AGAATGGTCTATGTGGCAGG+AGG + 15228:17027-17046 MS.gene61320:CDS 50.0%
ATTGGATGGTGACACGTGGA+AGG + 15228:17389-17408 MS.gene61320:CDS 50.0%
ATTTGGACTGAACCGTGGCT+AGG - 15228:16693-16712 MS.gene61320:intergenic 50.0%
CACTCTCGTGCTATGTCTTC+TGG - 15228:16547-16566 MS.gene61320:intergenic 50.0%
GGATATCGTACGGAGATGCA+AGG + 15228:17207-17226 MS.gene61320:CDS 50.0%
GGCACGATCAAAGTTGTTGG+TGG + 15228:17186-17205 MS.gene61320:CDS 50.0%
TCCAAAAACTCCTCCTCGAC+CGG - 15228:17285-17304 MS.gene61320:intergenic 50.0%
TGGATGATGCCACATGTCCA+AGG + 15228:17301-17320 MS.gene61320:CDS 50.0%
TGTTTGCCACCCTTTGCTCA+CGG - 15228:16611-16630 MS.gene61320:intergenic 50.0%
! ACGTGGCCGGTGAAATTTTC+TGG - 15228:17567-17586 MS.gene61320:intergenic 50.0%
! ATGTTGCTTGTGTGGGAGCT+TGG + 15228:17442-17461 MS.gene61320:CDS 50.0%
! CGTGGCCGGTGAAATTTTCT+GGG - 15228:17566-17585 MS.gene61320:intergenic 50.0%
! GATGATGTCGTGGCATTGGA+TGG + 15228:17375-17394 MS.gene61320:CDS 50.0%
! GTGTAAGGGTGATGATGTCG+TGG + 15228:17365-17384 MS.gene61320:CDS 50.0%
! GTGTTTTGTGCCGGAGACAA+TGG + 15228:17159-17178 MS.gene61320:CDS 50.0%
! TGTTGCTTGTGTGGGAGCTT+GGG + 15228:17443-17462 MS.gene61320:CDS 50.0%
AAAAATGTGCAGGGCCCACC+AGG - 15228:16985-17004 MS.gene61319:intergenic 55.0%
AGGAGTTCGATGTAGCCACG+TGG + 15228:17250-17269 MS.gene61320:CDS 55.0%
AGTTCGATGTAGCCACGTGG+AGG + 15228:17253-17272 MS.gene61320:CDS 55.0%
GACCTGTACTCCTCCGTACA+CGG - 15228:16657-16676 MS.gene61320:intergenic 55.0%
GAGGATGGGACCCTGATTCA+TGG + 15228:16893-16912 MS.gene61320:CDS 55.0%
GCAACCAGATTGAACGTGGC+CGG - 15228:17580-17599 MS.gene61320:intergenic 55.0%
GCGATTCGAACGTAGTGCTG+AGG + 15228:17230-17249 MS.gene61320:CDS 55.0%
GTGGATCCCGCTTCCTGATA+TGG + 15228:17110-17129 MS.gene61320:CDS 55.0%
TCCCTCGCCATATCAGGAAG+CGG - 15228:17120-17139 MS.gene61320:intergenic 55.0%
TTATCTGCTACGTGGCGTCG+CGG + 15228:16949-16968 MS.gene61320:CDS 55.0%
TTCACCGGCCACGTTCAATC+TGG + 15228:17573-17592 MS.gene61320:CDS 55.0%
! GGGTGATGATGTCGTGGCAT+TGG + 15228:17371-17390 MS.gene61320:CDS 55.0%
! TCCGGTCGAGGAGGAGTTTT+TGG + 15228:17281-17300 MS.gene61320:CDS 55.0%
! TGGCATTGGATGGTGACACG+TGG + 15228:17385-17404 MS.gene61320:CDS 55.0%
!! CGAAGGTGCCTAGGGAGATA+AGG + 15228:17418-17437 MS.gene61320:CDS 55.0%
CCCGCTTCCTGATATGGCGA+GGG + 15228:17116-17135 MS.gene61320:CDS 60.0%
CCCTCGCCATATCAGGAAGC+GGG - 15228:17119-17138 MS.gene61320:intergenic 60.0%
CGATGTAGCCACGTGGAGGT+GGG + 15228:17257-17276 MS.gene61320:CDS 60.0%
CGGTAGCCACCGTGAGCAAA+GGG + 15228:16599-16618 MS.gene61320:CDS 60.0%
CGTGCCAGAGCCATTGTCTC+CGG - 15228:17172-17191 MS.gene61320:intergenic 60.0%
CTCCGTACACGGCGAAACTC+CGG - 15228:16646-16665 MS.gene61320:intergenic 60.0%
GATGTAGCCACGTGGAGGTG+GGG + 15228:17258-17277 MS.gene61320:CDS 60.0%
GGATGGTGACACGTGGAAGG+TGG + 15228:17392-17411 MS.gene61320:CDS 60.0%
TAGCCACCGTGAGCAAAGGG+TGG + 15228:16602-16621 MS.gene61320:CDS 60.0%
TATCTGCTACGTGGCGTCGC+GGG + 15228:16950-16969 MS.gene61320:CDS 60.0%
TCACGCTCCCTCGCCATATC+AGG - 15228:17126-17145 MS.gene61320:intergenic 60.0%
TCCCGCTTCCTGATATGGCG+AGG + 15228:17115-17134 MS.gene61320:CDS 60.0%
TCGATGTAGCCACGTGGAGG+TGG + 15228:17256-17275 MS.gene61320:CDS 60.0%
TGGCTACCGCCGGAAATTCC+TGG - 15228:16588-16607 MS.gene61320:intergenic 60.0%
TGGTGACACGTGGAAGGTGG+TGG + 15228:17395-17414 MS.gene61320:CDS 60.0%
TGTGCCGGAGACAATGGCTC+TGG + 15228:17165-17184 MS.gene61320:CDS 60.0%
TGTGGCAGGAGGACATGACG+AGG + 15228:17038-17057 MS.gene61320:CDS 60.0%
TTGCCACCCTTTGCTCACGG+TGG - 15228:16608-16627 MS.gene61320:intergenic 60.0%
ATCTGCTACGTGGCGTCGCG+GGG + 15228:16951-16970 MS.gene61320:CDS 65.0%
CGCCGGAGTTTCGCCGTGTA+CGG + 15228:16641-16660 MS.gene61320:CDS 65.0%
CGGAGTTTCGCCGTGTACGG+AGG + 15228:16644-16663 MS.gene61320:CDS 65.0%
GCAGGGCCCACCAGGCATAT+CGG - 15228:16977-16996 MS.gene61320:intergenic 65.0%
GCGGTAGCCACCGTGAGCAA+AGG + 15228:16598-16617 MS.gene61320:CDS 65.0%
TTGCTCACGGTGGCTACCGC+CGG - 15228:16598-16617 MS.gene61320:intergenic 65.0%
! CACGTGGAAGGTGGTGGCGA+AGG + 15228:17401-17420 MS.gene61320:CDS 65.0%
! CGCCGTGTACGGAGGAGTAC+AGG + 15228:16652-16671 MS.gene61320:CDS 65.0%
!! AGGTGGTGGCGAAGGTGCCT+AGG + 15228:17409-17428 MS.gene61320:CDS 65.0%
!! GGTGGTGGCGAAGGTGCCTA+GGG + 15228:17410-17429 MS.gene61320:CDS 65.0%
AGCCACGTGGAGGTGGGGTC+CGG + 15228:17263-17282 MS.gene61320:CDS 70.0%
GCGGGGCCGATATGCCTGGT+GGG + 15228:16968-16987 MS.gene61320:CDS 70.0%
CGCGGGGCCGATATGCCTGG+TGG + 15228:16967-16986 MS.gene61320:CDS 75.0%
CGTCGCGGGGCCGATATGCC+TGG + 15228:16964-16983 MS.gene61320:CDS 75.0%
GACCGGACCCCACCTCCACG+TGG - 15228:17268-17287 MS.gene61320:intergenic 75.0%
GAGGTGGGGTCCGGTCGAGG+AGG + 15228:17272-17291 MS.gene61320:CDS 75.0%
GTGGAGGTGGGGTCCGGTCG+AGG + 15228:17269-17288 MS.gene61320:CDS 75.0%


Chromosome Type Strat End Strand Name
15228 gene 16523 17614 16523 ID=MS.gene61320
15228 mRNA 16523 17614 16523 ID=MS.gene61320.t1;Parent=MS.gene61320
15228 exon 16523 17614 16523 ID=MS.gene61320.t1.exon1;Parent=MS.gene61320.t1
15228 CDS 16523 17614 16523 ID=cds.MS.gene61320.t1;Parent=MS.gene61320.t1
Gene Sequence

>MS.gene61320

ATGGAGTTGATTTCAGGTTTACCAGAAGACATAGCACGAGAGTGTTTGGTTCGAGTTTCATACCAGGAATTTCCGGCGGTAGCCACCGTGAGCAAAGGGTGGCAAACAGAGATTCAAACGCCGGAGTTTCGCCGTGTACGGAGGAGTACAGGTCATGCTCAGAAAATCCTAGCCACGGTTCAGTCCAAATTTGATTCAGAAAAAAGCAAAACCGGTTTATTGGCTAAAGCAGCGAACCCAATTTATAAACTAAATGTATTGGAAACTGAAACAGGTATTTGGAGCGAGTTGCCAATGGGACCCGAATTAAGTGAAGGGTTACCCTTGTTTTGTCAAATTGCGGGTGTAGGGTATGATCTAGTTGTCATGGGAGGATGGGACCCTGATTCATGGAAAGCTTCAAATTCGGTGTTTATTTATAATTTTTTATCTGCTACGTGGCGTCGCGGGGCCGATATGCCTGGTGGGCCCTGCACATTTTTCTCTTGTGCATCAGATCATGAAAGAATGGTCTATGTGGCAGGAGGACATGACGAGGAGAAGAATGCATTGAAGTCAGCATTTGCTTACGATGTGGCAAATGATGTGTGGATCCCGCTTCCTGATATGGCGAGGGAGCGTGATGAGTGTAAGATAGTGTTTTGTGCCGGAGACAATGGCTCTGGCACGATCAAAGTTGTTGGTGGATATCGTACGGAGATGCAAGGGCGATTCGAACGTAGTGCTGAGGAGTTCGATGTAGCCACGTGGAGGTGGGGTCCGGTCGAGGAGGAGTTTTTGGATGATGCCACATGTCCAAGGACTTGTGTAGATGGTTGTGAATTGGAGAGAAGAATGTACATGTGTAAGGGTGATGATGTCGTGGCATTGGATGGTGACACGTGGAAGGTGGTGGCGAAGGTGCCTAGGGAGATAAGGAATGTTGCTTGTGTGGGAGCTTGGGCAGATGCATTGTTATTGATTGGGTCTAGTGGGTTTGGAGAACCTTATATGGGCTTTGTGTTGGACCTGAAGAATGGTGTTTGGAGTAAACTTGAAAACCCAGAAAATTTCACCGGCCACGTTCAATCTGGTTGCTTTTTGGAGATTTAA

Protein sequence

>MS.gene61320.t1

MELISGLPEDIARECLVRVSYQEFPAVATVSKGWQTEIQTPEFRRVRRSTGHAQKILATVQSKFDSEKSKTGLLAKAANPIYKLNVLETETGIWSELPMGPELSEGLPLFCQIAGVGYDLVVMGGWDPDSWKASNSVFIYNFLSATWRRGADMPGGPCTFFSCASDHERMVYVAGGHDEEKNALKSAFAYDVANDVWIPLPDMARERDECKIVFCAGDNGSGTIKVVGGYRTEMQGRFERSAEEFDVATWRWGPVEEEFLDDATCPRTCVDGCELERRMYMCKGDDVVALDGDTWKVVAKVPREIRNVACVGAWADALLLIGSSGFGEPYMGFVLDLKNGVWSKLENPENFTGHVQSGCFLEI