Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61385.t1 | XP_013453094.1 | 73.6 | 348 | 34 | 3 | 1 | 293 | 1 | 345 | 1.60E-119 | 439.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61385.t1 | Q9LV52 | 52.8 | 161 | 39 | 2 | 10 | 134 | 16 | 175 | 2.1e-35 | 151.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61385.t1 | A0A072UBW9 | 73.6 | 348 | 34 | 3 | 1 | 293 | 1 | 345 | 1.2e-119 | 439.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene61385.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052309 | MS.gene61385 | -0.801979 | 6.97E-49 | -1.69E-46 |
| MS.gene052458 | MS.gene61385 | 0.816798 | 4.59E-52 | -1.69E-46 |
| MS.gene05548 | MS.gene61385 | 0.926194 | 6.56E-91 | -1.69E-46 |
| MS.gene057079 | MS.gene61385 | 0.82476 | 6.78E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61385.t1 | MTR_6g086805 | 71.552 | 348 | 41 | 5 | 1 | 293 | 1 | 345 | 3.41e-160 | 449 |
| MS.gene61385.t1 | MTR_1g102860 | 29.832 | 238 | 102 | 6 | 11 | 187 | 40 | 273 | 1.66e-25 | 103 |
| MS.gene61385.t1 | MTR_5g029680 | 31.276 | 243 | 92 | 7 | 3 | 176 | 24 | 260 | 3.78e-25 | 104 |
| MS.gene61385.t1 | MTR_3g104550 | 30.392 | 204 | 84 | 3 | 11 | 156 | 46 | 249 | 2.80e-23 | 98.6 |
| MS.gene61385.t1 | MTR_6g043060 | 33.493 | 209 | 80 | 6 | 9 | 158 | 20 | 228 | 1.62e-22 | 95.5 |
| MS.gene61385.t1 | MTR_1g061170 | 29.146 | 199 | 83 | 3 | 9 | 150 | 47 | 244 | 3.24e-22 | 96.3 |
| MS.gene61385.t1 | MTR_2g100680 | 31.280 | 211 | 85 | 5 | 10 | 160 | 30 | 240 | 8.80e-21 | 92.0 |
| MS.gene61385.t1 | MTR_4g077970 | 30.047 | 213 | 81 | 6 | 6 | 151 | 7 | 218 | 1.06e-20 | 92.0 |
| MS.gene61385.t1 | MTR_1g100777 | 56.522 | 69 | 30 | 0 | 2 | 70 | 9 | 77 | 1.79e-20 | 89.7 |
| MS.gene61385.t1 | MTR_8g083100 | 32.212 | 208 | 82 | 5 | 12 | 160 | 23 | 230 | 6.70e-20 | 89.7 |
| MS.gene61385.t1 | MTR_2g100670 | 57.377 | 61 | 26 | 0 | 10 | 70 | 32 | 92 | 7.67e-20 | 87.8 |
| MS.gene61385.t1 | MTR_2g100670 | 30.159 | 189 | 78 | 3 | 10 | 144 | 140 | 328 | 1.34e-19 | 88.6 |
| MS.gene61385.t1 | MTR_5g010680 | 54.545 | 66 | 30 | 0 | 5 | 70 | 18 | 83 | 1.41e-19 | 87.8 |
| MS.gene61385.t1 | MTR_7g095680 | 29.310 | 232 | 96 | 7 | 11 | 177 | 49 | 277 | 1.46e-19 | 87.8 |
| MS.gene61385.t1 | MTR_5g017470 | 55.882 | 68 | 30 | 0 | 3 | 70 | 1 | 68 | 1.98e-19 | 86.3 |
| MS.gene61385.t1 | MTR_5g089170 | 57.576 | 66 | 28 | 0 | 5 | 70 | 19 | 84 | 1.99e-19 | 85.9 |
| MS.gene61385.t1 | MTR_8g105780 | 31.313 | 198 | 69 | 4 | 9 | 140 | 20 | 216 | 3.77e-19 | 86.7 |
| MS.gene61385.t1 | MTR_8g087540 | 58.065 | 62 | 26 | 0 | 9 | 70 | 10 | 71 | 4.81e-19 | 86.7 |
| MS.gene61385.t1 | MTR_3g101870 | 58.730 | 63 | 26 | 0 | 8 | 70 | 21 | 83 | 5.54e-19 | 86.3 |
| MS.gene61385.t1 | MTR_7g091370 | 54.098 | 61 | 28 | 0 | 10 | 70 | 21 | 81 | 1.31e-18 | 83.2 |
| MS.gene61385.t1 | MTR_1g071360 | 28.502 | 207 | 96 | 3 | 11 | 165 | 32 | 238 | 2.37e-17 | 81.3 |
| MS.gene61385.t1 | MTR_2g017890 | 53.226 | 62 | 29 | 0 | 9 | 70 | 13 | 74 | 2.67e-17 | 81.6 |
| MS.gene61385.t1 | MTR_1g071360 | 28.502 | 207 | 96 | 3 | 11 | 165 | 29 | 235 | 3.20e-17 | 81.3 |
| MS.gene61385.t1 | MTR_0020s0020 | 51.515 | 66 | 32 | 0 | 5 | 70 | 27 | 92 | 3.98e-17 | 80.9 |
| MS.gene61385.t1 | MTR_4g045757 | 50.000 | 62 | 31 | 0 | 7 | 68 | 10 | 71 | 6.64e-15 | 68.9 |
| MS.gene61385.t1 | MTR_4g088900 | 49.231 | 65 | 29 | 1 | 10 | 70 | 32 | 96 | 1.94e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61385.t1 | AT3G24520 | 50.262 | 191 | 54 | 3 | 8 | 158 | 14 | 203 | 2.42e-52 | 174 |
| MS.gene61385.t1 | AT3G51910 | 31.707 | 205 | 90 | 4 | 7 | 162 | 25 | 228 | 1.62e-27 | 108 |
| MS.gene61385.t1 | AT3G63350 | 31.016 | 187 | 75 | 2 | 10 | 142 | 27 | 213 | 5.35e-26 | 104 |
| MS.gene61385.t1 | AT5G03720 | 31.111 | 225 | 85 | 5 | 5 | 160 | 49 | 272 | 3.12e-24 | 101 |
| MS.gene61385.t1 | AT5G03720 | 31.111 | 225 | 85 | 5 | 5 | 160 | 49 | 272 | 3.12e-24 | 101 |
| MS.gene61385.t1 | AT4G17750 | 63.235 | 68 | 25 | 0 | 3 | 70 | 44 | 111 | 1.50e-22 | 97.4 |
| MS.gene61385.t1 | AT1G46264 | 42.400 | 125 | 62 | 4 | 8 | 130 | 31 | 147 | 2.17e-21 | 92.8 |
| MS.gene61385.t1 | AT5G16820 | 30.986 | 213 | 78 | 6 | 7 | 151 | 23 | 234 | 2.55e-21 | 94.0 |
| MS.gene61385.t1 | AT5G16820 | 30.986 | 213 | 78 | 6 | 7 | 151 | 23 | 234 | 2.55e-21 | 94.0 |
| MS.gene61385.t1 | AT5G54070 | 26.776 | 183 | 85 | 2 | 8 | 141 | 68 | 250 | 2.88e-20 | 89.4 |
| MS.gene61385.t1 | AT1G32330 | 30.734 | 218 | 77 | 6 | 6 | 150 | 32 | 248 | 3.90e-20 | 90.5 |
| MS.gene61385.t1 | AT1G32330 | 30.734 | 218 | 77 | 6 | 6 | 150 | 32 | 248 | 4.21e-20 | 90.5 |
| MS.gene61385.t1 | AT3G22830 | 65.000 | 60 | 21 | 0 | 11 | 70 | 61 | 120 | 6.09e-20 | 89.4 |
| MS.gene61385.t1 | AT3G02990 | 33.493 | 209 | 72 | 7 | 9 | 151 | 21 | 228 | 7.66e-20 | 89.4 |
| MS.gene61385.t1 | AT4G11660 | 56.061 | 66 | 29 | 0 | 5 | 70 | 53 | 118 | 6.04e-19 | 86.3 |
| MS.gene61385.t1 | AT4G13980 | 61.017 | 59 | 23 | 0 | 12 | 70 | 24 | 82 | 1.37e-18 | 85.9 |
| MS.gene61385.t1 | AT1G67970 | 57.143 | 63 | 26 | 1 | 9 | 70 | 17 | 79 | 1.86e-18 | 84.7 |
| MS.gene61385.t1 | AT2G26150 | 58.333 | 60 | 25 | 0 | 11 | 70 | 44 | 103 | 1.87e-18 | 84.7 |
| MS.gene61385.t1 | AT2G26150 | 58.333 | 60 | 25 | 0 | 11 | 70 | 44 | 103 | 1.87e-18 | 84.7 |
| MS.gene61385.t1 | AT4G36990 | 51.515 | 66 | 32 | 0 | 5 | 70 | 8 | 73 | 1.89e-18 | 83.6 |
| MS.gene61385.t1 | AT5G43840 | 30.178 | 169 | 74 | 2 | 10 | 134 | 18 | 186 | 3.62e-18 | 82.8 |
| MS.gene61385.t1 | AT2G41690 | 56.667 | 60 | 26 | 0 | 11 | 70 | 40 | 99 | 3.64e-17 | 79.3 |
| MS.gene61385.t1 | AT5G62020 | 51.515 | 66 | 32 | 0 | 5 | 70 | 17 | 82 | 6.60e-17 | 79.7 |
| MS.gene61385.t1 | AT5G45710 | 28.125 | 288 | 131 | 9 | 3 | 220 | 1 | 282 | 4.72e-16 | 77.8 |
| MS.gene61385.t1 | AT5G45710 | 28.125 | 288 | 131 | 9 | 3 | 220 | 1 | 282 | 4.72e-16 | 77.8 |
| MS.gene61385.t1 | AT4G18880 | 27.675 | 271 | 121 | 6 | 3 | 201 | 1 | 268 | 1.58e-14 | 73.6 |
Find 78 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGTGATAGTAGTAAAA+AGG | 0.204760 | 6.3:+80311627 | MS.gene61385:CDS |
| AAGAGAGTGAGAGAATTCTA+AGG | 0.267094 | 6.3:-80310484 | None:intergenic |
| TGGCTCCGGTGGGTGGTTGG+TGG | 0.288941 | 6.3:+80311503 | MS.gene61385:CDS |
| GCTCCGGTGGGTGGTTGGTG+GGG | 0.299967 | 6.3:+80311505 | MS.gene61385:CDS |
| CCACCTTCTAACAACGAAAA+AGG | 0.302300 | 6.3:-80311706 | None:intergenic |
| TTGATAAGGTTATCTGTGTT+TGG | 0.326130 | 6.3:-80310423 | None:intergenic |
| AGTTTGGACAGATGGGTTAT+AGG | 0.339452 | 6.3:+80311536 | MS.gene61385:CDS |
| CTCCGGTGGGTGGTTGGTGG+GGG | 0.345456 | 6.3:+80311506 | MS.gene61385:CDS |
| GGGCATGGCGGTGGCAAATT+CGG | 0.364204 | 6.3:+80311369 | MS.gene61385:CDS |
| GCCGGTGTTGTCTCCGACGC+CGG | 0.401712 | 6.3:+80311582 | MS.gene61385:CDS |
| ACGATGAAACTGTTGTTAGA+TGG | 0.404226 | 6.3:-80310453 | None:intergenic |
| GGCTCCGGTGGGTGGTTGGT+GGG | 0.407249 | 6.3:+80311504 | MS.gene61385:CDS |
| CGACGCCGGCGCCGATGATG+TGG | 0.444325 | 6.3:+80311596 | MS.gene61385:CDS |
| TTCGGTGAAGATGGAGTTTG+AGG | 0.446034 | 6.3:+80311387 | MS.gene61385:CDS |
| AGTATTCTAGACAAAATTTG+AGG | 0.453954 | 6.3:-80311235 | None:intergenic |
| TGTCGGAAATTTCAATGAAA+TGG | 0.454809 | 6.3:+80311654 | MS.gene61385:CDS |
| GTCAACTTCCTCGGAGTCAT+CGG | 0.460070 | 6.3:+80311348 | MS.gene61385:CDS |
| TAGATGGGCCCCACTTGATA+AGG | 0.462941 | 6.3:-80310437 | None:intergenic |
| CCACCTCCTGCGGTGGTGCA+CGG | 0.463396 | 6.3:-80311483 | None:intergenic |
| CTTGTGTTCTTAAATGGGAA+TGG | 0.469203 | 6.3:+80310344 | None:intergenic |
| ATGTCGTCGTCGCCGGAGCT+TGG | 0.470572 | 6.3:+80311439 | MS.gene61385:CDS |
| TTTAGAAGAAGATGAAGCTA+TGG | 0.473347 | 6.3:+80311078 | MS.gene61385:CDS |
| TTGTTGTGTTTGAAGAAAAG+AGG | 0.474502 | 6.3:-80310510 | None:intergenic |
| GGAGTCATCGGGCATGGCGG+TGG | 0.474769 | 6.3:+80311360 | MS.gene61385:CDS |
| CAGGAGGTGGCTCCGGTGGG+TGG | 0.478583 | 6.3:+80311496 | MS.gene61385:CDS |
| ACCGCAGGAGGTGGCTCCGG+TGG | 0.478779 | 6.3:+80311492 | MS.gene61385:CDS |
| GACGCCGGCGCCGATGATGT+GGG | 0.479475 | 6.3:+80311597 | MS.gene61385:CDS |
| GTTGATATCTCCGGTGGCTA+AGG | 0.482556 | 6.3:+80311303 | MS.gene61385:CDS |
| GGTGGCTAAGGCGGCCGTGA+CGG | 0.483148 | 6.3:+80311315 | MS.gene61385:CDS |
| CCGTGCACCACCGCAGGAGG+TGG | 0.485061 | 6.3:+80311483 | MS.gene61385:CDS |
| ACCACCGCAGGAGGTGGCTC+CGG | 0.485869 | 6.3:+80311489 | MS.gene61385:CDS |
| AGGTGGCTCCGGTGGGTGGT+TGG | 0.489246 | 6.3:+80311500 | MS.gene61385:CDS |
| AATTTAGAAGAAGAGCTTCA+AGG | 0.492990 | 6.3:+80311136 | MS.gene61385:CDS |
| TAACATGATGTCGTCGTCGC+CGG | 0.497684 | 6.3:+80311432 | MS.gene61385:CDS |
| GCAGATGGAGTTTGGACAGA+TGG | 0.497763 | 6.3:+80311528 | MS.gene61385:CDS |
| CCGCAGGAGGTGGCTCCGGT+GGG | 0.505617 | 6.3:+80311493 | MS.gene61385:CDS |
| TCAACTTCCTCGGAGTCATC+GGG | 0.508311 | 6.3:+80311349 | MS.gene61385:CDS |
| CGATGAAACTGTTGTTAGAT+GGG | 0.511534 | 6.3:-80310452 | None:intergenic |
| TGACGTCGTTGCCGCCGTCA+CGG | 0.512284 | 6.3:-80311329 | None:intergenic |
| AGAAGATGAAGCTATGGTGA+TGG | 0.518088 | 6.3:+80311084 | MS.gene61385:CDS |
| GGCAACGACGTCAACTTCCT+CGG | 0.518118 | 6.3:+80311339 | MS.gene61385:CDS |
| CAGATGGAGTTTGGACAGAT+GGG | 0.518140 | 6.3:+80311529 | MS.gene61385:CDS |
| GAAAAGACCACAACAAATGA+TGG | 0.518696 | 6.3:+80311186 | MS.gene61385:CDS |
| GGCTAAGGCGGCCGTGACGG+CGG | 0.526324 | 6.3:+80311318 | MS.gene61385:CDS |
| GAGGAAGATGAGGTAACGGT+TGG | 0.526402 | 6.3:+80311406 | MS.gene61385:CDS |
| GATGGAGTTTGAGGAAGATG+AGG | 0.529799 | 6.3:+80311396 | MS.gene61385:CDS |
| ACCGGAGCCACCTCCTGCGG+TGG | 0.537226 | 6.3:-80311490 | None:intergenic |
| TTCCTCGGAGTCATCGGGCA+TGG | 0.539288 | 6.3:+80311354 | MS.gene61385:CDS |
| GAAACGACGGTTGATATCTC+CGG | 0.543586 | 6.3:+80311294 | MS.gene61385:CDS |
| CACATCATCGGCGCCGGCGT+CGG | 0.545448 | 6.3:-80311595 | None:intergenic |
| GGTGGCAAATTCGGTGAAGA+TGG | 0.545610 | 6.3:+80311378 | MS.gene61385:CDS |
| GTCACGGCCGCCTTAGCCAC+CGG | 0.545636 | 6.3:-80311313 | None:intergenic |
| TCAATTTCAAAACCAAGCTC+CGG | 0.549174 | 6.3:-80311451 | None:intergenic |
| TCACCCCACATCATCGGCGC+CGG | 0.566971 | 6.3:-80311601 | None:intergenic |
| GATATCTCCGGTGGCTAAGG+CGG | 0.568045 | 6.3:+80311306 | MS.gene61385:CDS |
| TTGTGAAGTTCCACGGATGC+CGG | 0.574030 | 6.3:+80311564 | MS.gene61385:CDS |
| CTATTCTCACCCCACATCAT+CGG | 0.575525 | 6.3:-80311607 | None:intergenic |
| TTTGCACCGTGCACCACCGC+AGG | 0.578267 | 6.3:+80311477 | MS.gene61385:CDS |
| AGAGAGTGAGAGAATTCTAA+GGG | 0.578397 | 6.3:-80310483 | None:intergenic |
| GGAGACAACACCGGCATCCG+TGG | 0.579394 | 6.3:-80311574 | None:intergenic |
| GCACCGTGCACCACCGCAGG+AGG | 0.584699 | 6.3:+80311480 | MS.gene61385:CDS |
| GGCGTGATTGTGAAGTTCCA+CGG | 0.595018 | 6.3:+80311557 | MS.gene61385:CDS |
| CCCACCGGAGCCACCTCCTG+CGG | 0.595130 | 6.3:-80311493 | None:intergenic |
| GTTTGAGGAAGATGAGGTAA+CGG | 0.595921 | 6.3:+80311402 | MS.gene61385:CDS |
| ACACAGATAACCTTATCAAG+TGG | 0.597268 | 6.3:+80310427 | MS.gene61385:CDS |
| CACAGATAACCTTATCAAGT+GGG | 0.597725 | 6.3:+80310428 | MS.gene61385:CDS |
| ACGCCGGCGCCGATGATGTG+GGG | 0.609629 | 6.3:+80311598 | MS.gene61385:CDS |
| CGCCATGCCCGATGACTCCG+AGG | 0.624450 | 6.3:-80311356 | None:intergenic |
| AAATTTCAATGAAATGGCGG+CGG | 0.625567 | 6.3:+80311660 | MS.gene61385:CDS |
| CATTATGAAGACATACCACA+TGG | 0.631169 | 6.3:+80310392 | MS.gene61385:CDS |
| TGTTTGGTTCATTAACCATG+TGG | 0.639928 | 6.3:-80310407 | None:intergenic |
| CGGAAATTTCAATGAAATGG+CGG | 0.648772 | 6.3:+80311657 | MS.gene61385:CDS |
| GCCGGCGTCGGAGACAACAC+CGG | 0.674432 | 6.3:-80311583 | None:intergenic |
| ACGACGGTTGATATCTCCGG+TGG | 0.680566 | 6.3:+80311297 | MS.gene61385:CDS |
| CTCGGAGTCATCGGGCATGG+CGG | 0.681310 | 6.3:+80311357 | MS.gene61385:CDS |
| TGGTATGTCTTCATAATGAA+CGG | 0.681423 | 6.3:-80310387 | None:intergenic |
| TTGTTGATAACAAGAAACGA+CGG | 0.686402 | 6.3:+80311281 | MS.gene61385:CDS |
| ACAGATAACCTTATCAAGTG+GGG | 0.700643 | 6.3:+80310429 | MS.gene61385:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAATAATTATTTTAATG+AGG | + | chr6.3:80311042-80311061 | MS.gene61385:intron | 10.0% |
| !!! | TTATTGATATTTTTATTTCT+CGG | + | chr6.3:80310631-80310650 | MS.gene61385:intron | 10.0% |
| !!! | AAAAAATTGATAATTGGATT+AGG | - | chr6.3:80310578-80310597 | None:intergenic | 15.0% |
| !!! | TGTACTAAAAAATTGATAAT+TGG | - | chr6.3:80310584-80310603 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGTTTTTGTTTA+GGG | + | chr6.3:80310869-80310888 | MS.gene61385:intron | 15.0% |
| !!! | TTTTGTTTTTGTTTTTGTTT+AGG | + | chr6.3:80310862-80310881 | MS.gene61385:intron | 15.0% |
| !!! | AGTAATATTTTTGTCTGAAT+TGG | + | chr6.3:80310760-80310779 | MS.gene61385:intron | 20.0% |
| !!! | GTAATATTTTTGTCTGAATT+GGG | + | chr6.3:80310761-80310780 | MS.gene61385:intron | 20.0% |
| ! | AGAAGTGATAGTAGTAAAAA+GGG | + | chr6.3:80311628-80311647 | MS.gene61385:CDS | 25.0% |
| ! | AGTATTCTAGACAAAATTTG+AGG | - | chr6.3:80311238-80311257 | None:intergenic | 25.0% |
| ! | TAGAAGTGATAGTAGTAAAA+AGG | + | chr6.3:80311627-80311646 | MS.gene61385:CDS | 25.0% |
| !! | AATTTTTGTGCAAACCAAAT+CGG | - | chr6.3:80310701-80310720 | None:intergenic | 25.0% |
| !! | ATTTGTTGAAGAACATAGTT+AGG | + | chr6.3:80310957-80310976 | MS.gene61385:intron | 25.0% |
| !!! | AAAAAAGTGAGTTTTTGAAG+TGG | - | chr6.3:80310610-80310629 | None:intergenic | 25.0% |
| !!! | AAAAAGTGAGTTTTTGAAGT+GGG | - | chr6.3:80310609-80310628 | None:intergenic | 25.0% |
| AAGTGATAGTAGTAAAAAGG+GGG | + | chr6.3:80311630-80311649 | MS.gene61385:CDS | 30.0% | |
| AATTTAGAAGAAGAGCTTCA+AGG | + | chr6.3:80311136-80311155 | MS.gene61385:CDS | 30.0% | |
| ATAGTTAGGAAGAAACATGT+TGG | + | chr6.3:80310971-80310990 | MS.gene61385:intron | 30.0% | |
| GAAGTGATAGTAGTAAAAAG+GGG | + | chr6.3:80311629-80311648 | MS.gene61385:CDS | 30.0% | |
| TCTAACAACGAAAAAGGATA+AGG | - | chr6.3:80311703-80311722 | None:intergenic | 30.0% | |
| TGGTATGTCTTCATAATGAA+CGG | - | chr6.3:80310390-80310409 | None:intergenic | 30.0% | |
| TGTCGGAAATTTCAATGAAA+TGG | + | chr6.3:80311654-80311673 | MS.gene61385:CDS | 30.0% | |
| TTGATAAGGTTATCTGTGTT+TGG | - | chr6.3:80310426-80310445 | None:intergenic | 30.0% | |
| TTGTTGTGTTTGAAGAAAAG+AGG | - | chr6.3:80310513-80310532 | None:intergenic | 30.0% | |
| TTTAGAAGAAGATGAAGCTA+TGG | + | chr6.3:80311078-80311097 | MS.gene61385:CDS | 30.0% | |
| ! | AAAAAAGCCATCATTTGTTG+TGG | - | chr6.3:80311196-80311215 | None:intergenic | 30.0% |
| !! | AAATTGTGACGGACTAAATT+AGG | - | chr6.3:80310676-80310695 | None:intergenic | 30.0% |
| !! | TATCCTTTTTCGTTGTTAGA+AGG | + | chr6.3:80311703-80311722 | MS.gene61385:CDS | 30.0% |
| !! | TTGTTGATAACAAGAAACGA+CGG | + | chr6.3:80311281-80311300 | MS.gene61385:CDS | 30.0% |
| AAATTTCAATGAAATGGCGG+CGG | + | chr6.3:80311660-80311679 | MS.gene61385:CDS | 35.0% | |
| AACAACGAAAAAGGATAAGG+TGG | - | chr6.3:80311700-80311719 | None:intergenic | 35.0% | |
| AAGAGAGTGAGAGAATTCTA+AGG | - | chr6.3:80310487-80310506 | None:intergenic | 35.0% | |
| ACACAGATAACCTTATCAAG+TGG | + | chr6.3:80310427-80310446 | MS.gene61385:CDS | 35.0% | |
| ACAGATAACCTTATCAAGTG+GGG | + | chr6.3:80310429-80310448 | MS.gene61385:CDS | 35.0% | |
| ACGATGAAACTGTTGTTAGA+TGG | - | chr6.3:80310456-80310475 | None:intergenic | 35.0% | |
| AGAGAGTGAGAGAATTCTAA+GGG | - | chr6.3:80310486-80310505 | None:intergenic | 35.0% | |
| AGTGATAGTAGTAAAAAGGG+GGG | + | chr6.3:80311631-80311650 | MS.gene61385:CDS | 35.0% | |
| CACAGATAACCTTATCAAGT+GGG | + | chr6.3:80310428-80310447 | MS.gene61385:CDS | 35.0% | |
| CATTATGAAGACATACCACA+TGG | + | chr6.3:80310392-80310411 | MS.gene61385:CDS | 35.0% | |
| CCAAATCGGAAAAATTGTGA+CGG | - | chr6.3:80310687-80310706 | None:intergenic | 35.0% | |
| CGATGAAACTGTTGTTAGAT+GGG | - | chr6.3:80310455-80310474 | None:intergenic | 35.0% | |
| CGGAAATTTCAATGAAATGG+CGG | + | chr6.3:80311657-80311676 | MS.gene61385:CDS | 35.0% | |
| GAAAAGACCACAACAAATGA+TGG | + | chr6.3:80311186-80311205 | MS.gene61385:CDS | 35.0% | |
| TCAATTTCAAAACCAAGCTC+CGG | - | chr6.3:80311454-80311473 | None:intergenic | 35.0% | |
| ! | TGTTTAGGGTTTCAGAAAAG+TGG | + | chr6.3:80310883-80310902 | MS.gene61385:intron | 35.0% |
| ! | TGTTTGGTTCATTAACCATG+TGG | - | chr6.3:80310410-80310429 | None:intergenic | 35.0% |
| !! | AAGAAACATGTTGGTGGTAT+TGG | + | chr6.3:80310980-80310999 | MS.gene61385:intron | 35.0% |
| !! | GCGAATGAATGGTTTTTAAG+AGG | + | chr6.3:80310926-80310945 | MS.gene61385:intron | 35.0% |
| AAAAGTGGATCCGGATAGAT+GGG | + | chr6.3:80310898-80310917 | MS.gene61385:intron | 40.0% | |
| AGAAGATGAAGCTATGGTGA+TGG | + | chr6.3:80311084-80311103 | MS.gene61385:CDS | 40.0% | |
| CCACCTTCTAACAACGAAAA+AGG | - | chr6.3:80311709-80311728 | None:intergenic | 40.0% | |
| GATGGGAATTTGCGAATGAA+TGG | + | chr6.3:80310915-80310934 | MS.gene61385:intron | 40.0% | |
| GTTAGGAAGAAACATGTTGG+TGG | + | chr6.3:80310974-80310993 | MS.gene61385:intron | 40.0% | |
| GTTTGAGGAAGATGAGGTAA+CGG | + | chr6.3:80311402-80311421 | MS.gene61385:CDS | 40.0% | |
| TTCGCAAATTCCCATCTATC+CGG | - | chr6.3:80310911-80310930 | None:intergenic | 40.0% | |
| ! | CCGTCACAATTTTTCCGATT+TGG | + | chr6.3:80310684-80310703 | MS.gene61385:intron | 40.0% |
| ! | TTGGTGGTATTGGAAATGGA+AGG | + | chr6.3:80310990-80311009 | MS.gene61385:intron | 40.0% |
| !! | AGTTTGGACAGATGGGTTAT+AGG | + | chr6.3:80311536-80311555 | MS.gene61385:CDS | 40.0% |
| !! | CATGTTGGTGGTATTGGAAA+TGG | + | chr6.3:80310986-80311005 | MS.gene61385:intron | 40.0% |
| !! | CCTTTTTCGTTGTTAGAAGG+TGG | + | chr6.3:80311706-80311725 | MS.gene61385:CDS | 40.0% |
| CAGATGGAGTTTGGACAGAT+GGG | + | chr6.3:80311529-80311548 | MS.gene61385:CDS | 45.0% | |
| CTATTCTCACCCCACATCAT+CGG | - | chr6.3:80311610-80311629 | None:intergenic | 45.0% | |
| GAAAAGTGGATCCGGATAGA+TGG | + | chr6.3:80310897-80310916 | MS.gene61385:intron | 45.0% | |
| GATGGAGTTTGAGGAAGATG+AGG | + | chr6.3:80311396-80311415 | MS.gene61385:CDS | 45.0% | |
| GGGTTTCAGAAAAGTGGATC+CGG | + | chr6.3:80310889-80310908 | MS.gene61385:intron | 45.0% | |
| TTCGGTGAAGATGGAGTTTG+AGG | + | chr6.3:80311387-80311406 | MS.gene61385:CDS | 45.0% | |
| ! | AGTAGTAAAAAGGGGGGTGT+CGG | + | chr6.3:80311637-80311656 | MS.gene61385:CDS | 45.0% |
| ! | GAAACGACGGTTGATATCTC+CGG | + | chr6.3:80311294-80311313 | MS.gene61385:CDS | 45.0% |
| GCAGATGGAGTTTGGACAGA+TGG | + | chr6.3:80311528-80311547 | MS.gene61385:CDS | 50.0% | |
| GGCGTGATTGTGAAGTTCCA+CGG | + | chr6.3:80311557-80311576 | MS.gene61385:CDS | 50.0% | |
| GGGTAGCGAGAAAATTGCGA+GGG | + | chr6.3:80310781-80310800 | MS.gene61385:intron | 50.0% | |
| GTCAACTTCCTCGGAGTCAT+CGG | + | chr6.3:80311348-80311367 | MS.gene61385:CDS | 50.0% | |
| GTTGATATCTCCGGTGGCTA+AGG | + | chr6.3:80311303-80311322 | MS.gene61385:CDS | 50.0% | |
| TAACATGATGTCGTCGTCGC+CGG | + | chr6.3:80311432-80311451 | MS.gene61385:CDS | 50.0% | |
| TAGATGGGCCCCACTTGATA+AGG | - | chr6.3:80310440-80310459 | None:intergenic | 50.0% | |
| TCAACTTCCTCGGAGTCATC+GGG | + | chr6.3:80311349-80311368 | MS.gene61385:CDS | 50.0% | |
| TGGGTAGCGAGAAAATTGCG+AGG | + | chr6.3:80310780-80310799 | MS.gene61385:intron | 50.0% | |
| TTGTGAAGTTCCACGGATGC+CGG | + | chr6.3:80311564-80311583 | MS.gene61385:CDS | 50.0% | |
| ! | GAGGAAGATGAGGTAACGGT+TGG | + | chr6.3:80311406-80311425 | MS.gene61385:CDS | 50.0% |
| ! | GGTGGCAAATTCGGTGAAGA+TGG | + | chr6.3:80311378-80311397 | MS.gene61385:CDS | 50.0% |
| GATATCTCCGGTGGCTAAGG+CGG | + | chr6.3:80311306-80311325 | MS.gene61385:CDS | 55.0% | |
| GGCAACGACGTCAACTTCCT+CGG | + | chr6.3:80311339-80311358 | MS.gene61385:CDS | 55.0% | |
| ! | ACGACGGTTGATATCTCCGG+TGG | + | chr6.3:80311297-80311316 | MS.gene61385:CDS | 55.0% |
| GGGCATGGCGGTGGCAAATT+CGG | + | chr6.3:80311369-80311388 | MS.gene61385:CDS | 60.0% | |
| TGGTGGGGGCAGATGGAGTT+TGG | + | chr6.3:80311520-80311539 | MS.gene61385:CDS | 60.0% | |
| TTCCTCGGAGTCATCGGGCA+TGG | + | chr6.3:80311354-80311373 | MS.gene61385:CDS | 60.0% | |
| ATGTCGTCGTCGCCGGAGCT+TGG | + | chr6.3:80311439-80311458 | MS.gene61385:CDS | 65.0% | |
| CTCGGAGTCATCGGGCATGG+CGG | + | chr6.3:80311357-80311376 | MS.gene61385:CDS | 65.0% | |
| GGAGACAACACCGGCATCCG+TGG | - | chr6.3:80311577-80311596 | None:intergenic | 65.0% | |
| TCACCCCACATCATCGGCGC+CGG | - | chr6.3:80311604-80311623 | None:intergenic | 65.0% | |
| TGACGTCGTTGCCGCCGTCA+CGG | - | chr6.3:80311332-80311351 | None:intergenic | 65.0% | |
| TTTGCACCGTGCACCACCGC+AGG | + | chr6.3:80311477-80311496 | MS.gene61385:CDS | 65.0% | |
| ACCACCGCAGGAGGTGGCTC+CGG | + | chr6.3:80311489-80311508 | MS.gene61385:CDS | 70.0% | |
| AGGTGGCTCCGGTGGGTGGT+TGG | + | chr6.3:80311500-80311519 | MS.gene61385:CDS | 70.0% | |
| CCACCTCCTGCGGTGGTGCA+CGG | - | chr6.3:80311486-80311505 | None:intergenic | 70.0% | |
| CGCCATGCCCGATGACTCCG+AGG | - | chr6.3:80311359-80311378 | None:intergenic | 70.0% | |
| GGAGTCATCGGGCATGGCGG+TGG | + | chr6.3:80311360-80311379 | MS.gene61385:CDS | 70.0% | |
| GGCTCCGGTGGGTGGTTGGT+GGG | + | chr6.3:80311504-80311523 | MS.gene61385:CDS | 70.0% | |
| GGTGGCTAAGGCGGCCGTGA+CGG | + | chr6.3:80311315-80311334 | MS.gene61385:CDS | 70.0% | |
| GTCACGGCCGCCTTAGCCAC+CGG | - | chr6.3:80311316-80311335 | None:intergenic | 70.0% | |
| TGCCCCCACCAACCACCCAC+CGG | - | chr6.3:80311511-80311530 | None:intergenic | 70.0% | |
| TGGCTCCGGTGGGTGGTTGG+TGG | + | chr6.3:80311503-80311522 | MS.gene61385:CDS | 70.0% | |
| ! | GCCGGCGTCGGAGACAACAC+CGG | - | chr6.3:80311586-80311605 | None:intergenic | 70.0% |
| ! | GCTCCGGTGGGTGGTTGGTG+GGG | + | chr6.3:80311505-80311524 | MS.gene61385:CDS | 70.0% |
| !! | ACGCCGGCGCCGATGATGTG+GGG | + | chr6.3:80311598-80311617 | MS.gene61385:CDS | 70.0% |
| !! | CACATCATCGGCGCCGGCGT+CGG | - | chr6.3:80311598-80311617 | None:intergenic | 70.0% |
| !! | CTCCGGTGGGTGGTTGGTGG+GGG | + | chr6.3:80311506-80311525 | MS.gene61385:CDS | 70.0% |
| !! | GACGCCGGCGCCGATGATGT+GGG | + | chr6.3:80311597-80311616 | MS.gene61385:CDS | 70.0% |
| !! | GCCGGTGTTGTCTCCGACGC+CGG | + | chr6.3:80311582-80311601 | MS.gene61385:CDS | 70.0% |
| !! | GGGTGGTTGGTGGGGGCAGA+TGG | + | chr6.3:80311513-80311532 | MS.gene61385:CDS | 70.0% |
| ACCGCAGGAGGTGGCTCCGG+TGG | + | chr6.3:80311492-80311511 | MS.gene61385:CDS | 75.0% | |
| ACCGGAGCCACCTCCTGCGG+TGG | - | chr6.3:80311493-80311512 | None:intergenic | 75.0% | |
| CAGGAGGTGGCTCCGGTGGG+TGG | + | chr6.3:80311496-80311515 | MS.gene61385:CDS | 75.0% | |
| CCCACCGGAGCCACCTCCTG+CGG | - | chr6.3:80311496-80311515 | None:intergenic | 75.0% | |
| CCGCAGGAGGTGGCTCCGGT+GGG | + | chr6.3:80311493-80311512 | MS.gene61385:CDS | 75.0% | |
| CCGTGCACCACCGCAGGAGG+TGG | + | chr6.3:80311483-80311502 | MS.gene61385:CDS | 75.0% | |
| GCACCGTGCACCACCGCAGG+AGG | + | chr6.3:80311480-80311499 | MS.gene61385:CDS | 75.0% | |
| GGCTAAGGCGGCCGTGACGG+CGG | + | chr6.3:80311318-80311337 | MS.gene61385:CDS | 75.0% | |
| !! | CGACGCCGGCGCCGATGATG+TGG | + | chr6.3:80311596-80311615 | MS.gene61385:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 80310357 | 80311735 | 80310357 | ID=MS.gene61385 |
| chr6.3 | mRNA | 80310357 | 80311735 | 80310357 | ID=MS.gene61385.t1;Parent=MS.gene61385 |
| chr6.3 | exon | 80310357 | 80310566 | 80310357 | ID=MS.gene61385.t1.exon1;Parent=MS.gene61385.t1 |
| chr6.3 | CDS | 80310357 | 80310566 | 80310357 | ID=cds.MS.gene61385.t1;Parent=MS.gene61385.t1 |
| chr6.3 | exon | 80311064 | 80311735 | 80311064 | ID=MS.gene61385.t1.exon2;Parent=MS.gene61385.t1 |
| chr6.3 | CDS | 80311064 | 80311735 | 80311064 | ID=cds.MS.gene61385.t1;Parent=MS.gene61385.t1 |
| Gene Sequence |
| Protein sequence |
