AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052458

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052458.t1 MTR_6g086805 87.353 340 36 3 1 339 1 334 0.0 551
MS.gene052458.t1 MTR_4g097830 87.218 133 17 0 347 479 225 357 2.84e-74 241
MS.gene052458.t1 MTR_1g106005 87.218 133 17 0 347 479 225 357 4.19e-74 241
MS.gene052458.t1 MTR_3g110720 87.218 133 17 0 347 479 225 357 4.30e-74 241
MS.gene052458.t1 MTR_8g085980 78.195 133 29 0 347 479 225 357 1.05e-68 226
MS.gene052458.t1 MTR_7g085800 78.195 133 29 0 347 479 225 357 9.09e-68 224
MS.gene052458.t1 MTR_6g029190 72.868 129 35 0 351 479 230 358 3.92e-61 206
MS.gene052458.t1 MTR_3g063410 84.906 106 16 0 374 479 24 129 1.04e-59 195
MS.gene052458.t1 MTR_5g029680 43.802 242 120 5 3 233 24 260 1.60e-57 198
MS.gene052458.t1 MTR_4g077970 44.811 212 108 4 6 208 7 218 2.22e-52 184
MS.gene052458.t1 MTR_3g104550 44.118 204 113 1 11 213 46 249 5.55e-52 180
MS.gene052458.t1 MTR_7g095680 39.827 231 130 4 11 234 49 277 8.56e-50 174
MS.gene052458.t1 MTR_1g102860 39.516 248 122 5 11 244 40 273 2.52e-49 172
MS.gene052458.t1 MTR_2g041670 61.719 128 49 0 352 479 225 352 3.63e-48 173
MS.gene052458.t1 MTR_2g041400 60.156 128 51 0 352 479 225 352 1.43e-47 170
MS.gene052458.t1 MTR_3g063410 93.590 78 5 0 390 467 1 78 1.51e-47 161
MS.gene052458.t1 MTR_1g061170 39.423 208 115 3 5 207 43 244 1.15e-44 163
MS.gene052458.t1 MTR_8g105780 45.918 196 98 3 9 196 20 215 1.30e-43 158
MS.gene052458.t1 MTR_6g043060 42.857 203 107 4 9 208 20 216 5.71e-43 155
MS.gene052458.t1 MTR_8g087540 40.887 203 111 4 9 208 10 206 2.16e-42 155
MS.gene052458.t1 MTR_1g071360 39.732 224 106 4 11 222 32 238 4.57e-40 147
MS.gene052458.t1 MTR_1g071360 39.732 224 106 4 11 222 29 235 4.69e-40 148
MS.gene052458.t1 MTR_8g083100 40.175 229 93 5 12 217 23 230 1.26e-39 149
MS.gene052458.t1 MTR_2g100680 39.726 219 113 5 10 217 30 240 1.27e-39 149
MS.gene052458.t1 MTR_2g100670 37.143 210 93 3 10 201 32 220 2.07e-36 137
MS.gene052458.t1 MTR_2g017890 40.000 185 99 2 9 185 13 193 3.10e-36 138
MS.gene052458.t1 MTR_3g101870 55.263 114 51 0 8 121 21 134 4.73e-36 137
MS.gene052458.t1 MTR_5g010680 59.184 98 40 0 5 102 18 115 7.28e-36 136
MS.gene052458.t1 MTR_2g100670 36.893 206 99 2 10 201 140 328 8.86e-36 137
MS.gene052458.t1 MTR_1g100777 58.252 103 43 0 2 104 9 111 3.80e-35 133
MS.gene052458.t1 MTR_5g017470 56.863 102 44 0 3 104 1 102 3.04e-34 130
MS.gene052458.t1 MTR_5g089170 59.184 98 40 0 5 102 19 116 6.97e-34 128
MS.gene052458.t1 MTR_0020s0020 57.143 98 42 0 5 102 27 124 1.28e-32 127
MS.gene052458.t1 MTR_7g091370 54.839 93 42 0 10 102 21 113 3.42e-31 120
MS.gene052458.t1 MTR_4g088900 49.485 97 45 1 10 102 32 128 2.43e-26 106
MS.gene052458.t1 MTR_4g017630 36.207 116 74 0 352 467 228 343 1.66e-21 97.4
MS.gene052458.t1 MTR_4g094535 36.207 116 74 0 352 467 228 343 1.82e-21 97.1
MS.gene052458.t1 MTR_4g019110 37.069 116 73 0 352 467 228 343 2.96e-21 96.7
MS.gene052458.t1 MTR_3g113970 35.345 116 75 0 352 467 230 345 3.55e-21 96.3
MS.gene052458.t1 MTR_2g031310 35.345 116 75 0 352 467 228 343 4.05e-21 96.3
MS.gene052458.t1 MTR_1g101130 35.345 116 75 0 352 467 228 343 5.10e-21 95.9
MS.gene052458.t1 MTR_8g098360 34.188 117 77 0 351 467 227 343 5.19e-21 95.9
MS.gene052458.t1 MTR_7g089120 35.345 116 75 0 352 467 228 343 5.54e-21 95.9
MS.gene052458.t1 MTR_8g107250 34.746 118 77 0 350 467 227 344 6.46e-21 95.5
MS.gene052458.t1 MTR_4g019090 35.345 116 75 0 352 467 228 343 1.15e-20 94.7
MS.gene052458.t1 MTR_1g061170 33.129 163 89 5 50 207 2 149 4.33e-18 86.3
MS.gene052458.t1 MTR_4g045757 50.000 62 31 0 7 68 10 71 1.70e-14 68.9
MS.gene052458.t1 MTR_5g047190 41.758 91 46 2 19 102 1 91 2.15e-14 69.3
MS.gene052458.t1 MTR_7g117050 26.515 132 91 2 352 477 231 362 1.75e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052458.t1 AT3G24520 58.962 212 61 3 8 215 14 203 1.50e-77 246
MS.gene052458.t1 AT4G14960 84.962 133 20 0 347 479 225 357 5.35e-73 237
MS.gene052458.t1 AT4G14960 84.962 133 20 0 347 479 225 357 1.52e-72 236
MS.gene052458.t1 AT1G04820 84.962 133 20 0 347 479 225 357 1.59e-72 236
MS.gene052458.t1 AT1G50010 84.962 133 20 0 347 479 225 357 1.59e-72 236
MS.gene052458.t1 AT5G19780 78.195 133 29 0 347 479 225 357 1.01e-68 227
MS.gene052458.t1 AT5G19770 78.195 133 29 0 347 479 225 357 1.01e-68 227
MS.gene052458.t1 AT1G64740 77.519 129 29 0 351 479 229 357 3.73e-65 217
MS.gene052458.t1 AT4G17750 46.694 242 106 5 6 229 47 283 9.55e-58 199
MS.gene052458.t1 AT1G32330 45.161 217 104 3 6 207 32 248 1.75e-55 192
MS.gene052458.t1 AT1G32330 45.161 217 104 3 6 207 32 248 1.90e-55 192
MS.gene052458.t1 AT2G26150 45.366 205 107 3 11 210 44 248 2.57e-52 180
MS.gene052458.t1 AT2G26150 45.366 205 107 3 11 210 44 248 2.57e-52 180
MS.gene052458.t1 AT3G22830 37.417 302 169 7 11 294 61 360 3.59e-51 179
MS.gene052458.t1 AT3G02990 45.192 208 106 3 9 208 21 228 9.80e-50 177
MS.gene052458.t1 AT5G16820 44.340 212 108 4 7 208 23 234 7.17e-49 175
MS.gene052458.t1 AT5G16820 44.340 212 108 4 7 208 23 234 7.17e-49 175
MS.gene052458.t1 AT3G51910 40.826 218 110 4 7 219 25 228 5.03e-48 167
MS.gene052458.t1 AT5G03720 39.381 226 122 3 5 217 49 272 1.40e-46 167
MS.gene052458.t1 AT5G03720 39.381 226 122 3 5 217 49 272 1.40e-46 167
MS.gene052458.t1 AT1G67970 41.667 192 106 4 9 196 17 206 2.41e-45 162
MS.gene052458.t1 AT3G63350 40.933 193 105 3 10 199 27 213 8.27e-44 156
MS.gene052458.t1 AT5G54070 38.021 192 109 2 8 198 68 250 6.92e-41 149
MS.gene052458.t1 AT4G18880 37.066 259 151 3 9 258 13 268 1.15e-38 145
MS.gene052458.t1 AT5G43840 39.560 182 97 2 10 191 18 186 2.07e-38 141
MS.gene052458.t1 AT4G13980 37.688 199 118 3 12 208 24 218 2.67e-37 143
MS.gene052458.t1 AT5G45710 34.082 267 162 5 3 256 1 266 1.76e-36 138
MS.gene052458.t1 AT5G45710 34.082 267 162 5 3 256 1 266 1.76e-36 138
MS.gene052458.t1 AT1G46264 63.158 95 35 0 8 102 31 125 2.51e-36 137
MS.gene052458.t1 AT4G11660 59.184 98 40 0 5 102 53 150 7.64e-34 131
MS.gene052458.t1 AT4G36990 39.306 173 91 2 5 163 8 180 6.29e-33 127
MS.gene052458.t1 AT5G62020 55.102 98 44 0 5 102 17 114 2.74e-32 125
MS.gene052458.t1 AT2G41690 57.609 92 39 0 11 102 40 131 1.22e-30 119
MS.gene052458.t1 AT2G26150 40.000 145 82 3 71 210 49 193 3.39e-24 102
MS.gene052458.t1 AT2G26150 40.000 145 82 3 71 210 49 193 3.39e-24 102
MS.gene052458.t1 AT1G75780 36.207 116 74 0 352 467 229 344 1.53e-21 97.4
MS.gene052458.t1 AT1G20010 36.207 116 74 0 352 467 229 344 2.75e-21 96.7
MS.gene052458.t1 AT5G44340 35.897 117 75 0 351 467 227 343 3.99e-21 96.3
MS.gene052458.t1 AT2G29550 35.345 116 75 0 352 467 228 343 4.40e-21 96.3
MS.gene052458.t1 AT5G62700 35.345 116 75 0 352 467 228 343 4.82e-21 95.9
MS.gene052458.t1 AT5G62690 35.345 116 75 0 352 467 228 343 4.82e-21 95.9
MS.gene052458.t1 AT5G23860 35.345 116 75 0 352 467 228 343 5.15e-21 95.9
MS.gene052458.t1 AT5G23860 35.345 116 75 0 352 467 228 343 5.15e-21 95.9
MS.gene052458.t1 AT5G12250 35.345 116 75 0 352 467 228 343 5.54e-21 95.9
MS.gene052458.t1 AT4G20890 34.746 118 77 0 350 467 226 343 8.41e-21 95.1
MS.gene052458.t1 AT4G18870 41.573 89 52 0 11 99 146 234 8.51e-18 84.3
MS.gene052458.t1 AT4G18870 45.161 93 46 2 9 99 11 100 1.90e-17 83.2
MS.gene052458.t1 AT4G19630 33.654 104 66 1 1 101 1 104 3.30e-12 64.3
MS.gene052458.t1 AT3G61650 26.515 132 91 2 352 477 231 362 3.82e-11 65.5
MS.gene052458.t1 AT5G05620 25.758 132 92 2 352 477 231 362 9.82e-11 64.3

Find 128 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAGTGATAGTAGTAAAA+AGG 0.204760 6.1:+75627326 MS.gene052458:CDS
AATTTAGAAGAAGAGCTTAA+AGG 0.245328 6.1:+75626835 MS.gene052458:CDS
GGGCGTGCAAGTTCAAATTT+TGG 0.258839 6.1:+75628694 MS.gene052458:CDS
AGAAAGCATGAAATGGATTC+TGG 0.259381 6.1:-75628443 None:intergenic
AAGAGAGTGAGAGAATTCTA+AGG 0.267094 6.1:-75626189 None:intergenic
TGGCTCCGGTGGGTGGTTGG+TGG 0.288941 6.1:+75627202 MS.gene052458:CDS
GCTCCGGTGGGTGGTTGGTG+GGG 0.299967 6.1:+75627204 MS.gene052458:CDS
AAGAAACATGTTGGTGGTAT+TGG 0.321921 6.1:+75626682 MS.gene052458:CDS
TTGATAAGGTTATCTGTGTT+TGG 0.326130 6.1:-75626128 None:intergenic
AGTTTGGACAGATGGGTTAT+AGG 0.339452 6.1:+75627235 MS.gene052458:CDS
ACCATTCAGTTTGTGGAGTT+AGG 0.340399 6.1:+75628673 MS.gene052458:CDS
CTCCGGTGGGTGGTTGGTGG+GGG 0.345456 6.1:+75627205 MS.gene052458:CDS
ATTTGTTGAAGAACATAGTT+AGG 0.347369 6.1:+75626659 MS.gene052458:CDS
GAAAAGTGGATCCGGATAGA+TGG 0.355208 6.1:+75626599 MS.gene052458:CDS
GGGCATGGCGGTGGCAAATT+CGG 0.364204 6.1:+75627068 MS.gene052458:CDS
CCCTCGCCATGGAAAGTATA+TGG 0.371074 6.1:+75628573 MS.gene052458:CDS
ATGAAATGGATTCTGGGATA+TGG 0.372678 6.1:-75628436 None:intergenic
CCATTCAGTTTGTGGAGTTA+GGG 0.395129 6.1:+75628674 MS.gene052458:CDS
CCACCTCCTGCGGTGCTGCA+CGG 0.400433 6.1:-75627182 None:intergenic
ACGATGAAACTGTTGTTAGA+TGG 0.404226 6.1:-75626158 None:intergenic
CAAGAGGACCATTCAGTTTG+TGG 0.405146 6.1:+75628666 MS.gene052458:CDS
GGCTCCGGTGGGTGGTTGGT+GGG 0.407249 6.1:+75627203 MS.gene052458:CDS
CGGCGCCGGCGCCGATGATG+TGG 0.410102 6.1:+75627295 MS.gene052458:CDS
GCCGGTGTTGTCTCCGGCGC+CGG 0.429564 6.1:+75627281 MS.gene052458:CDS
CATGTTGGTGGTATTGGAAA+TGG 0.433048 6.1:+75626688 MS.gene052458:CDS
AAAGCATCGTCTTGTTTCTC+AGG 0.439449 6.1:+75628333 MS.gene052458:CDS
GATGGGAATTTGCGAATGAA+TGG 0.445117 6.1:+75626617 MS.gene052458:CDS
CCGTGCAGCACCGCAGGAGG+TGG 0.445531 6.1:+75627182 MS.gene052458:CDS
TTCGGTGAAGATGGAGTTTG+AGG 0.446034 6.1:+75627086 MS.gene052458:CDS
GACAGCAGCATTCACATCCT+TGG 0.453229 6.1:-75628629 None:intergenic
AGTATTCTAGACAAAATTTG+AGG 0.453954 6.1:-75626934 None:intergenic
TGTCGGAAATTTCAATGAAA+TGG 0.454809 6.1:+75627353 MS.gene052458:CDS
GTCAACTTCCTCGGAGTCAT+CGG 0.460070 6.1:+75627047 MS.gene052458:CDS
ACCGCAGGAGGTGGCTCCGG+TGG 0.460158 6.1:+75627191 MS.gene052458:CDS
CATATGAAGAAAGCATGAAA+TGG 0.460970 6.1:-75628450 None:intergenic
TAGATGGGCCCCACTTGATA+AGG 0.462941 6.1:-75626142 None:intergenic
TGTTTAGGGTTTCAGAAAAG+TGG 0.466529 6.1:+75626585 MS.gene052458:intron
CTTGTGTTCTTAAATGGGAA+TGG 0.469203 6.1:+75626049 None:intergenic
ATGTCGTCGTCGCCGGAGCT+TGG 0.470572 6.1:+75627138 MS.gene052458:CDS
CACAAACTGAATGGTCCTCT+TGG 0.472339 6.1:-75628665 None:intergenic
TTTAGAAGAAGATGAAGCTA+TGG 0.473347 6.1:+75626777 MS.gene052458:CDS
TTGTTGTGTTTGAAGAAAAG+AGG 0.474502 6.1:-75626215 None:intergenic
GGAGTCATCGGGCATGGCGG+TGG 0.474769 6.1:+75627059 MS.gene052458:CDS
CACATCATCGGCGCCGGCGC+CGG 0.474975 6.1:-75627294 None:intergenic
CAGGAGGTGGCTCCGGTGGG+TGG 0.478583 6.1:+75627195 MS.gene052458:CDS
GGCGCCGGCGCCGATGATGT+GGG 0.479475 6.1:+75627296 MS.gene052458:CDS
TTCGCAAATTCCCATCTATC+CGG 0.480483 6.1:-75626610 None:intergenic
GAAACGACGGTTGGTATCTC+CGG 0.480793 6.1:+75626993 MS.gene052458:CDS
GTTGGTATCTCCGGTGGCTA+AGG 0.482556 6.1:+75627002 MS.gene052458:CDS
GGTGGCTAAGGCGGCCGTGA+CGG 0.483148 6.1:+75627014 MS.gene052458:CDS
AGCACCGCAGGAGGTGGCTC+CGG 0.484407 6.1:+75627188 MS.gene052458:CDS
GAAAGCATGAAATGGATTCT+GGG 0.486512 6.1:-75628442 None:intergenic
GGGTTTCAGAAAAGTGGATC+CGG 0.486703 6.1:+75626591 MS.gene052458:intron
ACGGATGCCGGTGTTGTCTC+CGG 0.489094 6.1:+75627275 MS.gene052458:CDS
AGGTGGCTCCGGTGGGTGGT+TGG 0.489246 6.1:+75627199 MS.gene052458:CDS
GCGAATGAATGGTTTCTAAG+AGG 0.489855 6.1:+75626628 MS.gene052458:CDS
GATATGGCACCAAGTTGGTC+TGG 0.495701 6.1:-75628420 None:intergenic
CCGCAGGAGGTGGCTCCGGT+GGG 0.496989 6.1:+75627192 MS.gene052458:CDS
TAACATGATGTCGTCGTCGC+CGG 0.497684 6.1:+75627131 MS.gene052458:CDS
GCAGATGGAGTTTGGACAGA+TGG 0.497763 6.1:+75627227 MS.gene052458:CDS
TCCAGTTATCTCTGCTGAAA+AGG 0.504723 6.1:+75628474 MS.gene052458:CDS
TCAACTTCCTCGGAGTCATC+GGG 0.508311 6.1:+75627048 MS.gene052458:CDS
ACTGCTTCCTTGAGGTTCGA+TGG 0.508644 6.1:+75628370 MS.gene052458:CDS
CGATGAAACTGTTGTTAGAT+GGG 0.511534 6.1:-75626157 None:intergenic
TGACGTCGTTGCCGCCGTCA+CGG 0.512284 6.1:-75627028 None:intergenic
CCCTAACTCCACAAACTGAA+TGG 0.512517 6.1:-75628674 None:intergenic
ACAGCAGCATTCACATCCTT+GGG 0.514766 6.1:-75628628 None:intergenic
TTTGCACCGTGCAGCACCGC+AGG 0.515599 6.1:+75627176 MS.gene052458:CDS
AAAAGTGGATCCGGATAGAT+GGG 0.516894 6.1:+75626600 MS.gene052458:CDS
AGAAGATGAAGCTATGGTGA+TGG 0.518088 6.1:+75626783 MS.gene052458:CDS
GGCAACGACGTCAACTTCCT+CGG 0.518118 6.1:+75627038 MS.gene052458:CDS
CAGATGGAGTTTGGACAGAT+GGG 0.518140 6.1:+75627228 MS.gene052458:CDS
GAAAAGACCACAACAAATGA+TGG 0.518696 6.1:+75626885 MS.gene052458:CDS
CATCCTTGACTGCTTCCTTG+AGG 0.520386 6.1:+75628362 MS.gene052458:CDS
GGCTAAGGCGGCCGTGACGG+CGG 0.526324 6.1:+75627017 MS.gene052458:CDS
GAGGAAGATGAGGTAACGGT+TGG 0.526402 6.1:+75627105 MS.gene052458:CDS
GATGGAGTTTGAGGAAGATG+AGG 0.529799 6.1:+75627095 MS.gene052458:CDS
CAGTTAGCCATCATAGATGA+TGG 0.533817 6.1:-75628547 None:intergenic
TTCCTCGGAGTCATCGGGCA+TGG 0.539288 6.1:+75627053 MS.gene052458:CDS
GGTGGCAAATTCGGTGAAGA+TGG 0.545610 6.1:+75627077 MS.gene052458:CDS
GTCACGGCCGCCTTAGCCAC+CGG 0.545636 6.1:-75627012 None:intergenic
TGATGGCTCAAAAGCACTGT+TGG 0.546926 6.1:-75628530 None:intergenic
GTTATCGATGAGGTGAGGAC+TGG 0.548077 6.1:+75628310 MS.gene052458:CDS
GCCATATACTTTCCATGGCG+AGG 0.548508 6.1:-75628574 None:intergenic
TCAATTTCAAAACCAAGCTC+CGG 0.549174 6.1:-75627150 None:intergenic
GACTGAATTCCAGACCAACT+TGG 0.553364 6.1:+75628411 MS.gene052458:CDS
TCACCCCACATCATCGGCGC+CGG 0.555196 6.1:-75627300 None:intergenic
AGCAAGCCATATACTTTCCA+TGG 0.557975 6.1:-75628579 None:intergenic
GGTATCTCCGGTGGCTAAGG+CGG 0.568045 6.1:+75627005 MS.gene052458:CDS
TTGTGAAGTTCCACGGATGC+CGG 0.574030 6.1:+75627263 MS.gene052458:CDS
CTATTCTCACCCCACATCAT+CGG 0.575525 6.1:-75627306 None:intergenic
AGAGAGTGAGAGAATTCTAA+GGG 0.578397 6.1:-75626188 None:intergenic
GCACCGTGCAGCACCGCAGG+AGG 0.578773 6.1:+75627179 MS.gene052458:CDS
GGAGACAACACCGGCATCCG+TGG 0.579394 6.1:-75627273 None:intergenic
GAACCTCAAGGAAGCAGTCA+AGG 0.587394 6.1:-75628365 None:intergenic
CCATATACTTTCCATGGCGA+GGG 0.593487 6.1:-75628573 None:intergenic
GGCGTGATTGTGAAGTTCCA+CGG 0.595018 6.1:+75627256 MS.gene052458:CDS
CCCACCGGAGCCACCTCCTG+CGG 0.595130 6.1:-75627192 None:intergenic
GTTTGAGGAAGATGAGGTAA+CGG 0.595921 6.1:+75627101 MS.gene052458:CDS
ACACAGATAACCTTATCAAG+TGG 0.597268 6.1:+75626132 MS.gene052458:CDS
CACAGATAACCTTATCAAGT+GGG 0.597725 6.1:+75626133 MS.gene052458:CDS
CCGTGGTGATGTTGTTCCCA+AGG 0.598040 6.1:+75628612 MS.gene052458:CDS
GCCGGCGCCGGAGACAACAC+CGG 0.598769 6.1:-75627282 None:intergenic
TCTGGGATATGGCACCAAGT+TGG 0.605158 6.1:-75628425 None:intergenic
GCGCCGGCGCCGATGATGTG+GGG 0.609629 6.1:+75627297 MS.gene052458:CDS
GCTAACTGTGACCCTCGCCA+TGG 0.620555 6.1:+75628562 MS.gene052458:CDS
GTTAGGAAGAAACATGTTGG+TGG 0.621782 6.1:+75626676 MS.gene052458:CDS
CTCACCTCATCGATAACAGT+GGG 0.621848 6.1:-75628304 None:intergenic
GAGAGCACCATCGAACCTCA+AGG 0.623058 6.1:-75628377 None:intergenic
CGCCATGCCCGATGACTCCG+AGG 0.624450 6.1:-75627055 None:intergenic
TGATAACAAGAAACGACGGT+TGG 0.625527 6.1:+75626984 MS.gene052458:CDS
AAATTTCAATGAAATGGCGG+CGG 0.625567 6.1:+75627359 MS.gene052458:CDS
CATTATGAAGACATACCACA+TGG 0.631169 6.1:+75626097 MS.gene052458:CDS
TGTTTGGTTCATTAACCATG+TGG 0.639928 6.1:-75626112 None:intergenic
CGGAAATTTCAATGAAATGG+CGG 0.648772 6.1:+75627356 MS.gene052458:CDS
ATAGTTAGGAAGAAACATGT+TGG 0.649558 6.1:+75626673 MS.gene052458:CDS
ACGACGGTTGGTATCTCCGG+TGG 0.662890 6.1:+75626996 MS.gene052458:CDS
TGAGCCCACTGTTATCGATG+AGG 0.676846 6.1:+75628300 MS.gene052458:CDS
TCGCTACAATCAAAACCAAG+AGG 0.680258 6.1:+75628650 MS.gene052458:CDS
CTCGGAGTCATCGGGCATGG+CGG 0.681310 6.1:+75627056 MS.gene052458:CDS
TGGTATGTCTTCATAATGAA+CGG 0.681423 6.1:-75626092 None:intergenic
CCACTGTTATCGATGAGGTG+AGG 0.685674 6.1:+75628305 MS.gene052458:CDS
TTGTTGATAACAAGAAACGA+CGG 0.686402 6.1:+75626980 MS.gene052458:CDS
CCTCACCTCATCGATAACAG+TGG 0.687640 6.1:-75628305 None:intergenic
ACAGATAACCTTATCAAGTG+GGG 0.700643 6.1:+75626134 MS.gene052458:CDS
GCTTGCTGTTTGATGTACCG+TGG 0.703831 6.1:+75628595 MS.gene052458:CDS
TTGGTGGTATTGGAAATGGA+AGG 0.715173 6.1:+75626692 MS.gene052458:CDS
CCTTGGGAACAACATCACCA+CGG 0.759706 6.1:-75628612 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATCCATTTTTTTTTAT+AGG - chr6.1:75627671-75627690 None:intergenic 10.0%
!!! AATATCCATTTTTTTTTATA+GGG - chr6.1:75627670-75627689 None:intergenic 10.0%
!!! ATAATCATAAAATTTTATCT+TGG + chr6.1:75627452-75627471 MS.gene052458:intron 10.0%
!!! CAATAATAATTATTTTAATG+AGG + chr6.1:75626741-75626760 MS.gene052458:CDS 10.0%
!! AAAAAAGATAAAAAGGATAA+GGG + chr6.1:75627846-75627865 MS.gene052458:intron 15.0%
!! AAAATTAGAGATAAATTAGT+TGG + chr6.1:75628151-75628170 MS.gene052458:intron 15.0%
!! TAAAAAAGATAAAAAGGATA+AGG + chr6.1:75627845-75627864 MS.gene052458:intron 15.0%
!!! AAAAAATTGATAATTGGATT+AGG - chr6.1:75626283-75626302 None:intergenic 15.0%
!!! AAACTCACTTTTTTATTAAT+TGG + chr6.1:75626322-75626341 MS.gene052458:intron 15.0%
!!! ATATCCATTTTTTTTTATAG+GGG - chr6.1:75627669-75627688 None:intergenic 15.0%
!!! GTACTAAAAAAATTGATAAT+TGG - chr6.1:75626289-75626308 None:intergenic 15.0%
!!! TAATTGGTATTTTTATTTCT+CGG + chr6.1:75626338-75626357 MS.gene052458:intron 15.0%
!!! TTTGTTTTTGTTTTTGTTTA+GGG + chr6.1:75626571-75626590 MS.gene052458:intron 15.0%
!!! TTTTGTTTTTGTTTTTGTTT+AGG + chr6.1:75626570-75626589 MS.gene052458:intron 15.0%
!! AAAAGGAGATAGAAAATAAA+AGG + chr6.1:75627594-75627613 MS.gene052458:intron 20.0%
!! AGATAAAACAAAAAGTCAAA+AGG + chr6.1:75627577-75627596 MS.gene052458:intron 20.0%
!! TTAATGAGAAAGAAGAAAAA+GGG + chr6.1:75628214-75628233 MS.gene052458:intron 20.0%
!!! AGTAATATTTTTGTCTGAAT+TGG + chr6.1:75626468-75626487 MS.gene052458:intron 20.0%
!!! GTAATATTTTTGTCTGAATT+GGG + chr6.1:75626469-75626488 MS.gene052458:intron 20.0%
!!! TATCCATTTTTTTTTATAGG+GGG - chr6.1:75627668-75627687 None:intergenic 20.0%
!!! TTATTTTAGAAATACACACA+TGG - chr6.1:75627819-75627838 None:intergenic 20.0%
! AACAGAAACCACAATAAAAA+TGG + chr6.1:75628016-75628035 MS.gene052458:intron 25.0%
! AATTTAGAAGAAGAGCTTAA+AGG + chr6.1:75626835-75626854 MS.gene052458:CDS 25.0%
! AGAAGTGATAGTAGTAAAAA+GGG + chr6.1:75627327-75627346 MS.gene052458:CDS 25.0%
! AGTATTCTAGACAAAATTTG+AGG - chr6.1:75626937-75626956 None:intergenic 25.0%
! GTTAATGAGAAAGAAGAAAA+AGG + chr6.1:75628213-75628232 MS.gene052458:intron 25.0%
! TAGAAGTGATAGTAGTAAAA+AGG + chr6.1:75627326-75627345 MS.gene052458:CDS 25.0%
! TAGATTGAAACATCAAACTT+GGG - chr6.1:75628132-75628151 None:intergenic 25.0%
! TTAGATTGAAACATCAAACT+TGG - chr6.1:75628133-75628152 None:intergenic 25.0%
!! ATTTGTTGAAGAACATAGTT+AGG + chr6.1:75626659-75626678 MS.gene052458:CDS 25.0%
!!! AAAAAAGTGAGTTTTTGAAG+TGG - chr6.1:75626316-75626335 None:intergenic 25.0%
!!! AAAAAGTGAGTTTTTGAAGT+GGG - chr6.1:75626315-75626334 None:intergenic 25.0%
!!! ATTTTTTGTGCAAACCAAAT+CGG - chr6.1:75626408-75626427 None:intergenic 25.0%
!!! GAAAGTAACCATTTTTATTG+TGG - chr6.1:75628027-75628046 None:intergenic 25.0%
AAAAGAGGGCAAAAACATAA+GGG - chr6.1:75627698-75627717 None:intergenic 30.0%
AAGTGATAGTAGTAAAAAGG+GGG + chr6.1:75627329-75627348 MS.gene052458:CDS 30.0%
AATTAGTTGGATTGAAGTTG+TGG + chr6.1:75628164-75628183 MS.gene052458:intron 30.0%
AGATAAAAAGGATAAGGGAA+AGG + chr6.1:75627851-75627870 MS.gene052458:intron 30.0%
AGATTGAAACATCAAACTTG+GGG - chr6.1:75628131-75628150 None:intergenic 30.0%
ATAGTTAGGAAGAAACATGT+TGG + chr6.1:75626673-75626692 MS.gene052458:CDS 30.0%
GAAGTGATAGTAGTAAAAAG+GGG + chr6.1:75627328-75627347 MS.gene052458:CDS 30.0%
TCTAACAACGAAAAAGGATA+AGG - chr6.1:75627402-75627421 None:intergenic 30.0%
TGGTATGTCTTCATAATGAA+CGG - chr6.1:75626095-75626114 None:intergenic 30.0%
TGTCGGAAATTTCAATGAAA+TGG + chr6.1:75627353-75627372 MS.gene052458:CDS 30.0%
TTGATAAGGTTATCTGTGTT+TGG - chr6.1:75626131-75626150 None:intergenic 30.0%
TTGTTGTGTTTGAAGAAAAG+AGG - chr6.1:75626218-75626237 None:intergenic 30.0%
TTTAGAAGAAGATGAAGCTA+TGG + chr6.1:75626777-75626796 MS.gene052458:CDS 30.0%
! AAAAAAGCCATCATTTGTTG+TGG - chr6.1:75626895-75626914 None:intergenic 30.0%
! AAAAGGCTTAAATGCACTTT+TGG + chr6.1:75627611-75627630 MS.gene052458:intron 30.0%
! ATCGCAACTATTTGAAACAT+AGG - chr6.1:75627640-75627659 None:intergenic 30.0%
! CATATGAAGAAAGCATGAAA+TGG - chr6.1:75628453-75628472 None:intergenic 30.0%
! GTTTCAAATAGTTGCGATTT+TGG + chr6.1:75627642-75627661 MS.gene052458:intron 30.0%
! TCGCAACTATTTGAAACATA+GGG - chr6.1:75627639-75627658 None:intergenic 30.0%
! TTTTATTGTGGTTTCTGTTG+TGG - chr6.1:75628015-75628034 None:intergenic 30.0%
!! AAATTGTGACGGACTAAATT+AGG - chr6.1:75626383-75626402 None:intergenic 30.0%
!! GTTGTTGTGTTTTTACATTG+AGG - chr6.1:75627924-75627943 None:intergenic 30.0%
!! TATCCTTTTTCGTTGTTAGA+AGG + chr6.1:75627402-75627421 MS.gene052458:intron 30.0%
!! TTGTTGATAACAAGAAACGA+CGG + chr6.1:75626980-75626999 MS.gene052458:CDS 30.0%
AAAGAGGGCAAAAACATAAG+GGG - chr6.1:75627697-75627716 None:intergenic 35.0%
AAATTTCAATGAAATGGCGG+CGG + chr6.1:75627359-75627378 MS.gene052458:CDS 35.0%
AACAACGAAAAAGGATAAGG+TGG - chr6.1:75627399-75627418 None:intergenic 35.0%
AAGAGAGTGAGAGAATTCTA+AGG - chr6.1:75626192-75626211 None:intergenic 35.0%
AAGATCTACAAAAACAGCAC+GGG - chr6.1:75628281-75628300 None:intergenic 35.0%
ACACAGATAACCTTATCAAG+TGG + chr6.1:75626132-75626151 MS.gene052458:CDS 35.0%
ACAGATAACCTTATCAAGTG+GGG + chr6.1:75626134-75626153 MS.gene052458:CDS 35.0%
ACGATGAAACTGTTGTTAGA+TGG - chr6.1:75626161-75626180 None:intergenic 35.0%
AGAGAGTGAGAGAATTCTAA+GGG - chr6.1:75626191-75626210 None:intergenic 35.0%
AGTGATAGTAGTAAAAAGGG+GGG + chr6.1:75627330-75627349 MS.gene052458:CDS 35.0%
CAAAAGAGGGCAAAAACATA+AGG - chr6.1:75627699-75627718 None:intergenic 35.0%
CAAGATCTACAAAAACAGCA+CGG - chr6.1:75628282-75628301 None:intergenic 35.0%
CACAGATAACCTTATCAAGT+GGG + chr6.1:75626133-75626152 MS.gene052458:CDS 35.0%
CATTATGAAGACATACCACA+TGG + chr6.1:75626097-75626116 MS.gene052458:CDS 35.0%
CCAAATCGGAAAAATTGTGA+CGG - chr6.1:75626394-75626413 None:intergenic 35.0%
CGATGAAACTGTTGTTAGAT+GGG - chr6.1:75626160-75626179 None:intergenic 35.0%
CGGAAATTTCAATGAAATGG+CGG + chr6.1:75627356-75627375 MS.gene052458:CDS 35.0%
GAAAAGACCACAACAAATGA+TGG + chr6.1:75626885-75626904 MS.gene052458:CDS 35.0%
GCATATGTGTCAAATCACTT+AGG + chr6.1:75627744-75627763 MS.gene052458:intron 35.0%
TCAATTTCAAAACCAAGCTC+CGG - chr6.1:75627153-75627172 None:intergenic 35.0%
TGGCCCCCTATAAAAAAAAA+TGG + chr6.1:75627662-75627681 MS.gene052458:intron 35.0%
TTGACACATATGCTTTGACT+TGG - chr6.1:75627737-75627756 None:intergenic 35.0%
! AGAAAGCATGAAATGGATTC+TGG - chr6.1:75628446-75628465 None:intergenic 35.0%
! CGCAACTATTTGAAACATAG+GGG - chr6.1:75627638-75627657 None:intergenic 35.0%
! GAAAGCATGAAATGGATTCT+GGG - chr6.1:75628445-75628464 None:intergenic 35.0%
! GCAACTATTTGAAACATAGG+GGG - chr6.1:75627637-75627656 None:intergenic 35.0%
! TGTTTAGGGTTTCAGAAAAG+TGG + chr6.1:75626585-75626604 MS.gene052458:intron 35.0%
! TGTTTGGTTCATTAACCATG+TGG - chr6.1:75626115-75626134 None:intergenic 35.0%
! TTTTGAGCCATCATCTATGA+TGG + chr6.1:75628540-75628559 MS.gene052458:CDS 35.0%
!! AAGAAACATGTTGGTGGTAT+TGG + chr6.1:75626682-75626701 MS.gene052458:CDS 35.0%
!! ATGAAATGGATTCTGGGATA+TGG - chr6.1:75628439-75628458 None:intergenic 35.0%
!! TGCAAGTTCAAATTTTGGGT+TGG + chr6.1:75628699-75628718 MS.gene052458:CDS 35.0%
!!! GTTCAAATTTTGGGTTGGAT+TGG + chr6.1:75628704-75628723 MS.gene052458:CDS 35.0%
AAAAGGATAAGGGAAAGGTG+AGG + chr6.1:75627856-75627875 MS.gene052458:intron 40.0%
AAAAGTGGATCCGGATAGAT+GGG + chr6.1:75626600-75626619 MS.gene052458:CDS 40.0%
ACATGCTGCCATTGTTGAAA+AGG - chr6.1:75628056-75628075 None:intergenic 40.0%
ACCATTCAGTTTGTGGAGTT+AGG + chr6.1:75628673-75628692 MS.gene052458:CDS 40.0%
AGAAGATGAAGCTATGGTGA+TGG + chr6.1:75626783-75626802 MS.gene052458:CDS 40.0%
AGATCTACAAAAACAGCACG+GGG - chr6.1:75628280-75628299 None:intergenic 40.0%
AGCAAGCCATATACTTTCCA+TGG - chr6.1:75628582-75628601 None:intergenic 40.0%
AGTTGGATTGAAGTTGTGGT+GGG + chr6.1:75628168-75628187 MS.gene052458:intron 40.0%
ATTGGGATAGGAGATGATGA+TGG - chr6.1:75627957-75627976 None:intergenic 40.0%
CACCTCAGCAAATCAAAAGA+GGG - chr6.1:75627712-75627731 None:intergenic 40.0%
CAGTTAGCCATCATAGATGA+TGG - chr6.1:75628550-75628569 None:intergenic 40.0%
CATGCTGCCATTGTTGAAAA+GGG - chr6.1:75628055-75628074 None:intergenic 40.0%
CCACCTTCTAACAACGAAAA+AGG - chr6.1:75627408-75627427 None:intergenic 40.0%
CCATTCAGTTTGTGGAGTTA+GGG + chr6.1:75628674-75628693 MS.gene052458:CDS 40.0%
CTTAAACAGAAGCTTGAGGA+TGG - chr6.1:75627895-75627914 None:intergenic 40.0%
GAAGCTTAAACAGAAGCTTG+AGG - chr6.1:75627899-75627918 None:intergenic 40.0%
GATGGGAATTTGCGAATGAA+TGG + chr6.1:75626617-75626636 MS.gene052458:CDS 40.0%
GCGAATGAATGGTTTCTAAG+AGG + chr6.1:75626628-75626647 MS.gene052458:CDS 40.0%
GTCAAATCACTTAGGTGACA+AGG + chr6.1:75627752-75627771 MS.gene052458:intron 40.0%
GTTAGGAAGAAACATGTTGG+TGG + chr6.1:75626676-75626695 MS.gene052458:CDS 40.0%
GTTTGAGGAAGATGAGGTAA+CGG + chr6.1:75627101-75627120 MS.gene052458:CDS 40.0%
TAGTTGGATTGAAGTTGTGG+TGG + chr6.1:75628167-75628186 MS.gene052458:intron 40.0%
TATTGTGGTTTCTGTTGTGG+TGG - chr6.1:75628012-75628031 None:intergenic 40.0%
TCCAGTTATCTCTGCTGAAA+AGG + chr6.1:75628474-75628493 MS.gene052458:CDS 40.0%
TCGCTACAATCAAAACCAAG+AGG + chr6.1:75628650-75628669 MS.gene052458:CDS 40.0%
TGATAACAAGAAACGACGGT+TGG + chr6.1:75626984-75627003 MS.gene052458:CDS 40.0%
TTCGCAAATTCCCATCTATC+CGG - chr6.1:75626613-75626632 None:intergenic 40.0%
! CCGTCACAATTTTTCCGATT+TGG + chr6.1:75626391-75626410 MS.gene052458:intron 40.0%
! GGCGTGCAAGTTCAAATTTT+GGG + chr6.1:75628695-75628714 MS.gene052458:CDS 40.0%
! TCAGTGTCCCTTTTCAACAA+TGG + chr6.1:75628045-75628064 MS.gene052458:intron 40.0%
! TTGGTGGTATTGGAAATGGA+AGG + chr6.1:75626692-75626711 MS.gene052458:CDS 40.0%
!! AAAGCATCGTCTTGTTTCTC+AGG + chr6.1:75628333-75628352 MS.gene052458:CDS 40.0%
!! AGTTTGGACAGATGGGTTAT+AGG + chr6.1:75627235-75627254 MS.gene052458:CDS 40.0%
!! CATGTTGGTGGTATTGGAAA+TGG + chr6.1:75626688-75626707 MS.gene052458:CDS 40.0%
!! CCTTTTTCGTTGTTAGAAGG+TGG + chr6.1:75627405-75627424 MS.gene052458:intron 40.0%
!!! AGAAGGTGGCTTTTAGCTTT+TGG + chr6.1:75627419-75627438 MS.gene052458:intron 40.0%
ACAGCAGCATTCACATCCTT+GGG - chr6.1:75628631-75628650 None:intergenic 45.0%
CAACAATGGCAGCATGTTTC+AGG + chr6.1:75628059-75628078 MS.gene052458:intron 45.0%
CAAGAGGACCATTCAGTTTG+TGG + chr6.1:75628666-75628685 MS.gene052458:CDS 45.0%
CACAAACTGAATGGTCCTCT+TGG - chr6.1:75628668-75628687 None:intergenic 45.0%
CAGATGGAGTTTGGACAGAT+GGG + chr6.1:75627228-75627247 MS.gene052458:CDS 45.0%
CCACCTCAGCAAATCAAAAG+AGG - chr6.1:75627713-75627732 None:intergenic 45.0%
CCATATACTTTCCATGGCGA+GGG - chr6.1:75628576-75628595 None:intergenic 45.0%
CCCTAACTCCACAAACTGAA+TGG - chr6.1:75628677-75628696 None:intergenic 45.0%
CTATTCTCACCCCACATCAT+CGG - chr6.1:75627309-75627328 None:intergenic 45.0%
CTCACCTCATCGATAACAGT+GGG - chr6.1:75628307-75628326 None:intergenic 45.0%
GAAAAGTGGATCCGGATAGA+TGG + chr6.1:75626599-75626618 MS.gene052458:CDS 45.0%
GACTGAATTCCAGACCAACT+TGG + chr6.1:75628411-75628430 MS.gene052458:CDS 45.0%
GATGGAGTTTGAGGAAGATG+AGG + chr6.1:75627095-75627114 MS.gene052458:CDS 45.0%
GGGTTTCAGAAAAGTGGATC+CGG + chr6.1:75626591-75626610 MS.gene052458:intron 45.0%
GTTTCTGTTGTGGTGGTTGT+TGG - chr6.1:75628005-75628024 None:intergenic 45.0%
TTCGGTGAAGATGGAGTTTG+AGG + chr6.1:75627086-75627105 MS.gene052458:CDS 45.0%
! AGTAGTAAAAAGGGGGGTGT+CGG + chr6.1:75627336-75627355 MS.gene052458:CDS 45.0%
! GCCTTTTCAGCAGAGATAAC+TGG - chr6.1:75628478-75628497 None:intergenic 45.0%
! GGGCGTGCAAGTTCAAATTT+TGG + chr6.1:75628694-75628713 MS.gene052458:CDS 45.0%
!! GATAGGAGATGATGATGGTG+CGG - chr6.1:75627952-75627971 None:intergenic 45.0%
!! TGATGGCTCAAAAGCACTGT+TGG - chr6.1:75628533-75628552 None:intergenic 45.0%
!!! CCTCTTTTGATTTGCTGAGG+TGG + chr6.1:75627710-75627729 MS.gene052458:intron 45.0%
!!! TGCCCTCTTTTGATTTGCTG+AGG + chr6.1:75627707-75627726 MS.gene052458:intron 45.0%
!! AAAAAATAAAAAAGATAAAA+AGG + chr6.1:75627839-75627858 MS.gene052458:intron 5.0%
ACTGCTTCCTTGAGGTTCGA+TGG + chr6.1:75628370-75628389 MS.gene052458:CDS 50.0%
CATCCTTGACTGCTTCCTTG+AGG + chr6.1:75628362-75628381 MS.gene052458:CDS 50.0%
CCACTGTTATCGATGAGGTG+AGG + chr6.1:75628305-75628324 MS.gene052458:CDS 50.0%
CCTCACCTCATCGATAACAG+TGG - chr6.1:75628308-75628327 None:intergenic 50.0%
CCTTGGGAACAACATCACCA+CGG - chr6.1:75628615-75628634 None:intergenic 50.0%
CTGTTGTGGTGGTTGTTGGA+AGG - chr6.1:75628001-75628020 None:intergenic 50.0%
GAACCTCAAGGAAGCAGTCA+AGG - chr6.1:75628368-75628387 None:intergenic 50.0%
GACAGCAGCATTCACATCCT+TGG - chr6.1:75628632-75628651 None:intergenic 50.0%
GCAGATGGAGTTTGGACAGA+TGG + chr6.1:75627227-75627246 MS.gene052458:CDS 50.0%
GCCATATACTTTCCATGGCG+AGG - chr6.1:75628577-75628596 None:intergenic 50.0%
GGCGTGATTGTGAAGTTCCA+CGG + chr6.1:75627256-75627275 MS.gene052458:CDS 50.0%
GGGTAGCGAGAAAATTGCGA+GGG + chr6.1:75626489-75626508 MS.gene052458:intron 50.0%
GTCAACTTCCTCGGAGTCAT+CGG + chr6.1:75627047-75627066 MS.gene052458:CDS 50.0%
GTTATCGATGAGGTGAGGAC+TGG + chr6.1:75628310-75628329 MS.gene052458:CDS 50.0%
TAACATGATGTCGTCGTCGC+CGG + chr6.1:75627131-75627150 MS.gene052458:CDS 50.0%
TAGATGGGCCCCACTTGATA+AGG - chr6.1:75626145-75626164 None:intergenic 50.0%
TCAACTTCCTCGGAGTCATC+GGG + chr6.1:75627048-75627067 MS.gene052458:CDS 50.0%
TGAGCCCACTGTTATCGATG+AGG + chr6.1:75628300-75628319 MS.gene052458:CDS 50.0%
TGGGTAGCGAGAAAATTGCG+AGG + chr6.1:75626488-75626507 MS.gene052458:intron 50.0%
TTGTGAAGTTCCACGGATGC+CGG + chr6.1:75627263-75627282 MS.gene052458:CDS 50.0%
TTGTGGTGGTTGTTGGAAGG+AGG - chr6.1:75627998-75628017 None:intergenic 50.0%
! CCCTCGCCATGGAAAGTATA+TGG + chr6.1:75628573-75628592 MS.gene052458:CDS 50.0%
! GAAACGACGGTTGGTATCTC+CGG + chr6.1:75626993-75627012 MS.gene052458:CDS 50.0%
! GAGGAAGATGAGGTAACGGT+TGG + chr6.1:75627105-75627124 MS.gene052458:CDS 50.0%
! GGTGGCAAATTCGGTGAAGA+TGG + chr6.1:75627077-75627096 MS.gene052458:CDS 50.0%
! TCTGGGATATGGCACCAAGT+TGG - chr6.1:75628428-75628447 None:intergenic 50.0%
!! GATATGGCACCAAGTTGGTC+TGG - chr6.1:75628423-75628442 None:intergenic 50.0%
!! GCTTGCTGTTTGATGTACCG+TGG + chr6.1:75628595-75628614 MS.gene052458:CDS 50.0%
GGCAACGACGTCAACTTCCT+CGG + chr6.1:75627038-75627057 MS.gene052458:CDS 55.0%
GTTGGTATCTCCGGTGGCTA+AGG + chr6.1:75627002-75627021 MS.gene052458:CDS 55.0%
TGGTGGTTGTTGGAAGGAGG+TGG - chr6.1:75627995-75628014 None:intergenic 55.0%
TGGTTGTTGGAAGGAGGTGG+TGG - chr6.1:75627992-75628011 None:intergenic 55.0%
! CCGTGGTGATGTTGTTCCCA+AGG + chr6.1:75628612-75628631 MS.gene052458:CDS 55.0%
!! GAGAGCACCATCGAACCTCA+AGG - chr6.1:75628380-75628399 None:intergenic 55.0%
GCTAACTGTGACCCTCGCCA+TGG + chr6.1:75628562-75628581 MS.gene052458:CDS 60.0%
GGGCATGGCGGTGGCAAATT+CGG + chr6.1:75627068-75627087 MS.gene052458:CDS 60.0%
GGTATCTCCGGTGGCTAAGG+CGG + chr6.1:75627005-75627024 MS.gene052458:CDS 60.0%
TGCGGTGGGCAGATTGGGAT+AGG - chr6.1:75627969-75627988 None:intergenic 60.0%
TGGTGGGGGCAGATGGAGTT+TGG + chr6.1:75627219-75627238 MS.gene052458:CDS 60.0%
TTCCTCGGAGTCATCGGGCA+TGG + chr6.1:75627053-75627072 MS.gene052458:CDS 60.0%
! ACGACGGTTGGTATCTCCGG+TGG + chr6.1:75626996-75627015 MS.gene052458:CDS 60.0%
! GTTGGAAGGAGGTGGTGGTG+CGG - chr6.1:75627987-75628006 None:intergenic 60.0%
!! ACGGATGCCGGTGTTGTCTC+CGG + chr6.1:75627275-75627294 MS.gene052458:CDS 60.0%
ATGTCGTCGTCGCCGGAGCT+TGG + chr6.1:75627138-75627157 MS.gene052458:CDS 65.0%
CTCGGAGTCATCGGGCATGG+CGG + chr6.1:75627056-75627075 MS.gene052458:CDS 65.0%
GGAGACAACACCGGCATCCG+TGG - chr6.1:75627276-75627295 None:intergenic 65.0%
GGTGGTGCGGTGGGCAGATT+GGG - chr6.1:75627974-75627993 None:intergenic 65.0%
TCACCCCACATCATCGGCGC+CGG - chr6.1:75627303-75627322 None:intergenic 65.0%
TGACGTCGTTGCCGCCGTCA+CGG - chr6.1:75627031-75627050 None:intergenic 65.0%
TTTGCACCGTGCAGCACCGC+AGG + chr6.1:75627176-75627195 MS.gene052458:CDS 65.0%
! GAAGGAGGTGGTGGTGCGGT+GGG - chr6.1:75627983-75628002 None:intergenic 65.0%
! TGGTGGTGCGGTGGGCAGAT+TGG - chr6.1:75627975-75627994 None:intergenic 65.0%
AGCACCGCAGGAGGTGGCTC+CGG + chr6.1:75627188-75627207 MS.gene052458:CDS 70.0%
AGGTGGCTCCGGTGGGTGGT+TGG + chr6.1:75627199-75627218 MS.gene052458:CDS 70.0%
CGCCATGCCCGATGACTCCG+AGG - chr6.1:75627058-75627077 None:intergenic 70.0%
GGAGTCATCGGGCATGGCGG+TGG + chr6.1:75627059-75627078 MS.gene052458:CDS 70.0%
GGCTCCGGTGGGTGGTTGGT+GGG + chr6.1:75627203-75627222 MS.gene052458:CDS 70.0%
GGTGGCTAAGGCGGCCGTGA+CGG + chr6.1:75627014-75627033 MS.gene052458:CDS 70.0%
GTCACGGCCGCCTTAGCCAC+CGG - chr6.1:75627015-75627034 None:intergenic 70.0%
TGCCCCCACCAACCACCCAC+CGG - chr6.1:75627210-75627229 None:intergenic 70.0%
TGGCTCCGGTGGGTGGTTGG+TGG + chr6.1:75627202-75627221 MS.gene052458:CDS 70.0%
! GCTCCGGTGGGTGGTTGGTG+GGG + chr6.1:75627204-75627223 MS.gene052458:CDS 70.0%
! GGAAGGAGGTGGTGGTGCGG+TGG - chr6.1:75627984-75628003 None:intergenic 70.0%
!! CCACCTCCTGCGGTGCTGCA+CGG - chr6.1:75627185-75627204 None:intergenic 70.0%
!! CTCCGGTGGGTGGTTGGTGG+GGG + chr6.1:75627205-75627224 MS.gene052458:CDS 70.0%
!! GGGTGGTTGGTGGGGGCAGA+TGG + chr6.1:75627212-75627231 MS.gene052458:CDS 70.0%
ACCGCAGGAGGTGGCTCCGG+TGG + chr6.1:75627191-75627210 MS.gene052458:CDS 75.0%
CAGGAGGTGGCTCCGGTGGG+TGG + chr6.1:75627195-75627214 MS.gene052458:CDS 75.0%
CCCACCGGAGCCACCTCCTG+CGG - chr6.1:75627195-75627214 None:intergenic 75.0%
CCGCAGGAGGTGGCTCCGGT+GGG + chr6.1:75627192-75627211 MS.gene052458:CDS 75.0%
CCGTGCAGCACCGCAGGAGG+TGG + chr6.1:75627182-75627201 MS.gene052458:CDS 75.0%
GCACCGTGCAGCACCGCAGG+AGG + chr6.1:75627179-75627198 MS.gene052458:CDS 75.0%
GGCTAAGGCGGCCGTGACGG+CGG + chr6.1:75627017-75627036 MS.gene052458:CDS 75.0%
! GCCGGCGCCGGAGACAACAC+CGG - chr6.1:75627285-75627304 None:intergenic 75.0%
!! CACATCATCGGCGCCGGCGC+CGG - chr6.1:75627297-75627316 None:intergenic 75.0%
!! GCCGGTGTTGTCTCCGGCGC+CGG + chr6.1:75627281-75627300 MS.gene052458:CDS 75.0%
!! GCGCCGGCGCCGATGATGTG+GGG + chr6.1:75627297-75627316 MS.gene052458:CDS 75.0%
!! GGCGCCGGCGCCGATGATGT+GGG + chr6.1:75627296-75627315 MS.gene052458:CDS 75.0%
!!! CGGCGCCGGCGCCGATGATG+TGG + chr6.1:75627295-75627314 MS.gene052458:CDS 80.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 75626062 75628744 75626062 ID=MS.gene052458
chr6.1 mRNA 75626062 75628744 75626062 ID=MS.gene052458.t1;Parent=MS.gene052458
chr6.1 exon 75626062 75626271 75626062 ID=MS.gene052458.t1.exon1;Parent=MS.gene052458.t1
chr6.1 CDS 75626062 75626271 75626062 ID=cds.MS.gene052458.t1;Parent=MS.gene052458.t1
chr6.1 exon 75626592 75627387 75626592 ID=MS.gene052458.t1.exon2;Parent=MS.gene052458.t1
chr6.1 CDS 75626592 75627387 75626592 ID=cds.MS.gene052458.t1;Parent=MS.gene052458.t1
chr6.1 exon 75628296 75628744 75628296 ID=MS.gene052458.t1.exon3;Parent=MS.gene052458.t1
chr6.1 CDS 75628296 75628744 75628296 ID=cds.MS.gene052458.t1;Parent=MS.gene052458.t1
Gene Sequence

>MS.gene052458

ATGGGAATGGAGCAAAACAACGTGATTGCACCGTTCATTATGAAGACATACCACATGGTTAATGAACCAAACACAGATAACCTTATCAAGTGGGGCCCATCTAACAACAGTTTCATCGTTCTTGATCCCTTAGAATTCTCTCACTCTCTTCTTCCTCTTTTCTTCAAACACAACAATTTCTCAAGCTTTGTTCGTCAACTCAACACTTACGTAAGTAACCTAATCCAATTATCAATTTTTTTAGTACAAACCCACTTCAAAAACTCACTTTTTTATTAATTGGTATTTTTATTTCTCGGTAATTCGATCAAATGAAGACCTAATTTAGTCCGTCACAATTTTTCCGATTTGGTTTGCACAAAAAATATATATTCTAATTAGTCTTTGATATTTTCATGACTAATTTAGTAATATTTTTGTCTGAATTGGGTAGCGAGAAAATTGCGAGGGTTAAATTGAGTTTTTAGTTTTTAATCAAATTCAAATTTTGATTATTAAAATTTTTGTGTTTTGTTTTTGTTTTTGTTTAGGGTTTCAGAAAAGTGGATCCGGATAGATGGGAATTTGCGAATGAATGGTTTCTAAGAGGACAAAAACATTTGTTGAAGAACATAGTTAGGAAGAAACATGTTGGTGGTATTGGAAATGGAAGGAATAATAATAATAATAATTATTATAACAATAATAATTATTTTAATGAGGTGAAGTTTGAAGATTTAGAAGAAGATGAAGCTATGGTGATGGAAATAGCAAAGTTGAAAGAAGAACAAAGAAATTTAGAAGAAGAGCTTAAAGGAATGAACAAAAGATTAGAAACAACTGAGAAAAGACCACAACAAATGATGGCTTTTTTATGTAATGTCGTTGAAGATCCTCAAATTTTGTCTAGAATACTAAATGAAAGAGAGAGTAAAAAATTTGTTGATAACAAGAAACGACGGTTGGTATCTCCGGTGGCTAAGGCGGCCGTGACGGCGGCAACGACGTCAACTTCCTCGGAGTCATCGGGCATGGCGGTGGCAAATTCGGTGAAGATGGAGTTTGAGGAAGATGAGGTAACGGTTGGTAATAACATGATGTCGTCGTCGCCGGAGCTTGGTTTTGAAATTGATTATTTGCACCGTGCAGCACCGCAGGAGGTGGCTCCGGTGGGTGGTTGGTGGGGGCAGATGGAGTTTGGACAGATGGGTTATAGGCGTGATTGTGAAGTTCCACGGATGCCGGTGTTGTCTCCGGCGCCGGCGCCGATGATGTGGGGTGAGAATAGAAGTGATAGTAGTAAAAAGGGGGGTGTCGGAAATTTCAATGAAATGGCGGCGGAAAATAGTAAGTTGCCACCTTATCCTTTTTCGTTGTTAGAAGGTGGCTTTTAGCTTTTGGATTTTCTTTCATAATCATAAAATTTTATCTTGGATTCTATCTTTTTTCTATTAAAAGATCTATTTTTCTCTTTTTAGATTTCTTTGTTATACTCTTTGTAATATCTCTATGTATTTTTTTAATTTGTGTGTAAAGAGATAAAACAAAAAGTCAAAAGGAGATAGAAAATAAAAGGCTTAAATGCACTTTTGGCCCCCTATGTTTCAAATAGTTGCGATTTTGGCCCCCTATAAAAAAAAATGGATATTTTGACCCCTTATGTTTTTGCCCTCTTTTGATTTGCTGAGGTGGACCAAGTCAAAGCATATGTGTCAAATCACTTAGGTGACAAGGATGACATCTGTAAATTTTTTAATTAAAAATAATTATAAATACCATGTGTGTATTTCTAAAATAAAAAAAATAAAAAAGATAAAAAGGATAAGGGAAAGGTGAGGAACACGTTGAGCACCATCCTCAAGCTTCTGTTTAAGCTTCTTCCTCAATGTAAAAACACAACAACAACAACCGCACCATCATCATCTCCTATCCCAATCTGCCCACCGCACCACCACCTCCTTCCAACAACCACCACAACAGAAACCACAATAAAAATGGTTACTTTCAGTGTCCCTTTTCAACAATGGCAGCATGTTTCAGGAAAGTAATTTTGAATATTCTTGAGAAATATGAAGCATTTTGTTGAGCCCCAAGTTTGATGTTTCAATCTAAAATTAGAGATAAATTAGTTGGATTGAAGTTGTGGTGGGAGAAATGAGTGTTGTTGTTGATGTTAATGAGAAAGAAGAAAAAGGGTTGTTGTTGTTGTAGTCTGAGAGATAAAGTCTAGCATCTTCCCCGTGCTGTTTTTGTAGATCTTGAGCCCACTGTTATCGATGAGGTGAGGACTGGAAAGCATCGTCTTGTTTCTCAGGTGATTTCATCCTTGACTGCTTCCTTGAGGTTCGATGGTGCTCTCAATGTTGAAGTGACTGAATTCCAGACCAACTTGGTGCCATATCCCAGAATCCATTTCATGCTTTCTTCATATGCTCCAGTTATCTCTGCTGAAAAGGCTTATCATGAGCAGCTTTCAGTTGCTGAAATTACCAACAGTGCTTTTGAGCCATCATCTATGATGGCTAACTGTGACCCTCGCCATGGAAAGTATATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTTCCCAAGGATGTGAATGCTGCTGTCGCTACAATCAAAACCAAGAGGACCATTCAGTTTGTGGAGTTAGGGCGTGCAAGTTCAAATTTTGGGTTGGATTGGATTGTTATGAAAAGATGA
Protein sequence

>MS.gene052458.t1

MGMEQNNVIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRKKHVGGIGNGRNNNNNNYYNNNNYFNEVKFEDLEEDEAMVMEIAKLKEEQRNLEEELKGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNERESKKFVDNKKRRLVSPVAKAAVTAATTSTSSESSGMAVANSVKMEFEEDEVTVGNNMMSSSPELGFEIDYLHRAAPQEVAPVGGWWGQMEFGQMGYRRDCEVPRMPVLSPAPAPMMWGENRSDSSKKGGVGNFNEMAAENNLEPTVIDEVRTGKHRLVSQVISSLTASLRFDGALNVEVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMANCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVELGRASSNFGLDWIVMKR