Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61440.t1 | XP_003597804.1 | 98.1 | 371 | 7 | 0 | 4 | 374 | 60 | 430 | 3.70E-214 | 753.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61440.t1 | Q944I4 | 72.2 | 371 | 99 | 1 | 6 | 372 | 84 | 454 | 8.3e-162 | 571.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61440.t1 | G7IME0 | 98.1 | 371 | 7 | 0 | 4 | 374 | 60 | 430 | 2.7e-214 | 753.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049285 | MS.gene61440 | 0.807959 | 3.92E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene61440 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene61440 | 0.80625 | 9.01E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene61440 | 0.806181 | 9.32E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene61440 | 0.810443 | 1.15E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene61440 | 0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene61440 | 0.85067 | 1.46E-60 | -1.69E-46 |
| MS.gene056657 | MS.gene61440 | 0.800543 | 1.37E-48 | -1.69E-46 |
| MS.gene058419 | MS.gene61440 | 0.813854 | 2.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61440.t1 | MTR_2g102510 | 98.113 | 371 | 7 | 0 | 4 | 374 | 60 | 430 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61440.t1 | AT1G80380 | 72.312 | 372 | 99 | 2 | 6 | 373 | 84 | 455 | 0.0 | 573 |
| MS.gene61440.t1 | AT1G80380 | 76.081 | 347 | 82 | 1 | 28 | 373 | 17 | 363 | 0.0 | 570 |
| MS.gene61440.t1 | AT1G80380 | 71.237 | 372 | 97 | 3 | 6 | 373 | 84 | 449 | 0.0 | 556 |
| MS.gene61440.t1 | AT1G80380 | 71.196 | 368 | 80 | 1 | 32 | 373 | 22 | 389 | 0.0 | 553 |
| MS.gene61440.t1 | AT1G80380 | 75.828 | 302 | 72 | 1 | 28 | 328 | 17 | 318 | 7.98e-178 | 497 |
| MS.gene61440.t1 | AT1G80380 | 71.148 | 305 | 78 | 1 | 32 | 336 | 22 | 316 | 8.78e-168 | 471 |
| MS.gene61440.t1 | AT1G80380 | 71.148 | 305 | 78 | 1 | 32 | 336 | 22 | 316 | 8.78e-168 | 471 |
| MS.gene61440.t1 | AT1G80380 | 78.205 | 156 | 34 | 0 | 218 | 373 | 206 | 361 | 5.67e-88 | 270 |
| MS.gene61440.t1 | AT1G80380 | 58.871 | 124 | 47 | 2 | 6 | 125 | 84 | 207 | 3.09e-43 | 154 |
Find 0 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAATAACTACAAA+AGG | + | 15220:17222-17241 | MS.gene61440:intergenic | 10.0% |
| !! | TTGTATAAAGAAATAATAAA+CGG | - | 15220:19868-19887 | MS.gene61440:intron | 10.0% |
| !!! | ATATATTATTCTATTTTTTC+TGG | - | 15220:16469-16488 | MS.gene61440:CDS | 10.0% |
| !!! | ATTGTTTTAACTATAAAAAT+AGG | + | 15220:19391-19410 | MS.gene61440:intergenic | 10.0% |
| !! | AAAAATAACTTATGATCATT+TGG | - | 15220:19299-19318 | MS.gene61440:intron | 15.0% |
| !! | TAACTATAAAAATAGGATTT+GGG | + | 15220:19384-19403 | MS.gene61440:intergenic | 15.0% |
| !! | TACAAAATGAAAAAATTATG+AGG | + | 15220:18354-18373 | MS.gene61440:intergenic | 15.0% |
| !! | TATTACTTAGATAAGTAAAA+GGG | - | 15220:16863-16882 | MS.gene61440:intron | 15.0% |
| !! | TTAAAATACAATCTTAAACA+TGG | - | 15220:16090-16109 | MS.gene61440:CDS | 15.0% |
| !! | TTAACTATAAAAATAGGATT+TGG | + | 15220:19385-19404 | MS.gene61440:intergenic | 15.0% |
| !! | TTAACTGTAAATATAACTAT+AGG | - | 15220:18300-18319 | MS.gene61440:CDS | 15.0% |
| !! | TTATTACTTAGATAAGTAAA+AGG | - | 15220:16862-16881 | MS.gene61440:intron | 15.0% |
| !!! | TATAGATGATTTTTATTTGA+CGG | - | 15220:18589-18608 | MS.gene61440:intron | 15.0% |
| !!! | TATTGTATGTTAAAATTTTC+AGG | - | 15220:18549-18568 | MS.gene61440:intron | 15.0% |
| !! | AAACCTTAAACAAATGTTTA+AGG | + | 15220:17095-17114 | MS.gene61440:intergenic | 20.0% |
| !! | AAATAAATTCATACAGATCT+TGG | + | 15220:18002-18021 | MS.gene61440:intergenic | 20.0% |
| !! | AACCTTAAACAAATGTTTAA+GGG | + | 15220:17094-17113 | MS.gene61440:intergenic | 20.0% |
| !! | AACTATAAAAATAGGATTTG+GGG | + | 15220:19383-19402 | MS.gene61440:intergenic | 20.0% |
| !! | ACTATATATGGTATATACTT+AGG | - | 15220:17067-17086 | MS.gene61440:intron | 20.0% |
| !! | AGAAGACTAAAAATACAAAT+TGG | + | 15220:16819-16838 | MS.gene61440:intergenic | 20.0% |
| !! | AGTAAACTAAAATTCATTCA+AGG | + | 15220:17146-17165 | MS.gene61440:intergenic | 20.0% |
| !! | ATATTTATTTGTACCACTAA+AGG | + | 15220:18258-18277 | MS.gene61440:intergenic | 20.0% |
| !! | ATGTATAGATAGAATAGAAT+AGG | - | 15220:16411-16430 | MS.gene61440:CDS | 20.0% |
| !! | CTTAAAATACAAGATGATAA+AGG | + | 15220:18957-18976 | MS.gene61440:intergenic | 20.0% |
| !! | GCTTATTAAACTTACATTTA+CGG | - | 15220:19459-19478 | MS.gene61440:intron | 20.0% |
| !! | GTTACAAATAATTAGAACTT+TGG | - | 15220:16278-16297 | MS.gene61440:CDS | 20.0% |
| !! | TAAATACATAAATGCCTAAT+TGG | + | 15220:17759-17778 | MS.gene61440:intergenic | 20.0% |
| !! | TAGAAGTAAACTAGTTAAAA+AGG | + | 15220:16195-16214 | MS.gene61440:intergenic | 20.0% |
| !! | TATTCTTGCCATAAAAAAAT+TGG | - | 15220:19567-19586 | MS.gene61440:intron | 20.0% |
| !! | TGAAAGAAAATTCATATCTT+TGG | - | 15220:16995-17014 | MS.gene61440:intron | 20.0% |
| !!! | ATAACTATAGGATTTTGTAA+GGG | - | 15220:18312-18331 | MS.gene61440:CDS | 20.0% |
| !!! | TATAACTATAGGATTTTGTA+AGG | - | 15220:18311-18330 | MS.gene61440:CDS | 20.0% |
| !!! | TATTTTTATTTGAAGTATCC+AGG | - | 15220:18984-19003 | MS.gene61440:intron | 20.0% |
| !!! | TCTTGTTTAGAAACTATATA+TGG | - | 15220:17055-17074 | MS.gene61440:intron | 20.0% |
| !!! | TTTTTTTTAAATTGGTCTAG+TGG | - | 15220:17603-17622 | MS.gene61440:intron | 20.0% |
| ! | AAAGAAGATGAAATTGTAGT+AGG | + | 15220:16652-16671 | MS.gene61440:intergenic | 25.0% |
| ! | AAGAAGATGAAATTGTAGTA+GGG | + | 15220:16651-16670 | MS.gene61440:intergenic | 25.0% |
| ! | ACCAAGATATGATAAAGTAA+GGG | - | 15220:19022-19041 | MS.gene61440:intron | 25.0% |
| ! | AGAGAAATAAGACCAATAAT+GGG | + | 15220:17269-17288 | MS.gene61440:intergenic | 25.0% |
| ! | ATGGATAGTCATTAAGATTA+AGG | - | 15220:19967-19986 | MS.gene61440:intron | 25.0% |
| ! | CGAAAGAAAAAGAATAAGAT+GGG | + | 15220:18670-18689 | MS.gene61440:intergenic | 25.0% |
| ! | GTCTTCTTTATCTTTGAATT+TGG | + | 15220:18229-18248 | MS.gene61440:intergenic | 25.0% |
| ! | GTTCTCAGATTATACTTAAT+TGG | + | 15220:18789-18808 | MS.gene61440:intergenic | 25.0% |
| ! | TACCAAGATATGATAAAGTA+AGG | - | 15220:19021-19040 | MS.gene61440:intron | 25.0% |
| ! | TATTTACACACATATATGAG+AGG | - | 15220:18760-18779 | MS.gene61440:intron | 25.0% |
| ! | TCGAAAGAAAAAGAATAAGA+TGG | + | 15220:18671-18690 | MS.gene61440:intergenic | 25.0% |
| ! | TTAACCAAAATGTCTAAAGA+AGG | - | 15220:18905-18924 | MS.gene61440:intron | 25.0% |
| ! | TTACAGTTAAAGCTTATTGA+AGG | + | 15220:18290-18309 | MS.gene61440:intergenic | 25.0% |
| ! | TTGTAACAAACTAACAATGA+GGG | - | 15220:17718-17737 | MS.gene61440:intron | 25.0% |
| !! | GAATCATAGATCAATTTTCA+TGG | - | 15220:16059-16078 | MS.gene61440:CDS | 25.0% |
| !! | TCTGAAATGTTAAGTTCAAT+TGG | - | 15220:19227-19246 | MS.gene61440:intron | 25.0% |
| !! | TGAAAGTATATATTCACAAG+AGG | + | 15220:19600-19619 | MS.gene61440:intergenic | 25.0% |
| !!! | ATGAATTTTAGTTTACTTCG+AGG | - | 15220:17149-17168 | MS.gene61440:intron | 25.0% |
| !!! | CTACTTTTTTTTATGAGTTG+AGG | - | 15220:19824-19843 | MS.gene61440:intron | 25.0% |
| !!! | TGAATTTTAGTTTACTTCGA+GGG | - | 15220:17150-17169 | MS.gene61440:intron | 25.0% |
| !!! | TGTACGTTTTAGTTTTCATA+TGG | + | 15220:16322-16341 | MS.gene61440:intergenic | 25.0% |
| !!! | TTTTTTATGAGTTGAGGAAT+TGG | - | 15220:19830-19849 | MS.gene61440:intron | 25.0% |
| AAAAGACTCTCTTACAGTAA+GGG | + | 15220:19186-19205 | MS.gene61439:intergenic | 30.0% | |
| AATTACAAAGTTTGTGATCC+TGG | - | 15220:20050-20069 | MS.gene61440:intron | 30.0% | |
| AGTTAGCAATCATACCAATT+AGG | - | 15220:17742-17761 | MS.gene61440:intron | 30.0% | |
| ATTAGATAGCTTAGAAAGTG+TGG | + | 15220:16752-16771 | MS.gene61440:intergenic | 30.0% | |
| ATTGCAGAATAAACTAAGAG+AGG | - | 15220:18710-18729 | MS.gene61440:intron | 30.0% | |
| ATTTCAGCCTGCAATTTAAA+CGG | + | 15220:20100-20119 | MS.gene61440:intergenic | 30.0% | |
| CAGAGAAATAAGACCAATAA+TGG | + | 15220:17270-17289 | MS.gene61440:intergenic | 30.0% | |
| CTGTATGAATTTATTTGCTC+AGG | - | 15220:18006-18025 | MS.gene61440:CDS | 30.0% | |
| GAAGGAAATACTGAATATAC+AGG | + | 15220:17955-17974 | MS.gene61440:intergenic | 30.0% | |
| GAGCACTAAAGAGATATATT+TGG | - | 15220:16250-16269 | MS.gene61440:CDS | 30.0% | |
| GTAAGGGAAAAAATGTTCAA+GGG | - | 15220:18328-18347 | MS.gene61440:CDS | 30.0% | |
| GTCCCTTAAACATTTGTTTA+AGG | - | 15220:17089-17108 | MS.gene61440:intron | 30.0% | |
| GTGTTTATTTGAGTATGTGT+TGG | + | 15220:17629-17648 | MS.gene61440:intergenic | 30.0% | |
| GTTGTAACAAACTAACAATG+AGG | - | 15220:17717-17736 | MS.gene61440:intron | 30.0% | |
| TAAAAGACTCTCTTACAGTA+AGG | + | 15220:19187-19206 | MS.gene61440:intergenic | 30.0% | |
| TAATTTACTGATCTGAACCT+GGG | + | 15220:19741-19760 | MS.gene61440:intergenic | 30.0% | |
| TACTCAAATAAACACAGACA+CGG | - | 15220:17634-17653 | MS.gene61440:intron | 30.0% | |
| TATAGATATGCACATTGAAG+AGG | + | 15220:19431-19450 | MS.gene61440:intergenic | 30.0% | |
| TATATATTCACAAGAGGCAA+AGG | + | 15220:19594-19613 | MS.gene61440:intergenic | 30.0% | |
| TCCCTTACTTTATCATATCT+TGG | + | 15220:19026-19045 | MS.gene61440:intergenic | 30.0% | |
| TGTAAGGGAAAAAATGTTCA+AGG | - | 15220:18327-18346 | MS.gene61440:CDS | 30.0% | |
| TTTATCTAAACCACTTCATG+TGG | - | 15220:19340-19359 | MS.gene61440:intron | 30.0% | |
| TTTATTTGTACCACTAAAGG+AGG | + | 15220:18255-18274 | MS.gene61440:intergenic | 30.0% | |
| TTTCTCATTCTGTTGGAATT+AGG | - | 15220:17559-17578 | MS.gene61440:intron | 30.0% | |
| ! | AAACCAATTTTGTCAAGCAA+AGG | + | 15220:18033-18052 | MS.gene61440:intergenic | 30.0% |
| ! | ATATCTTGGTAACTTCATCT+TGG | + | 15220:19012-19031 | MS.gene61440:intergenic | 30.0% |
| ! | GAAAACAGATTTTGTATACC+TGG | + | 15220:18622-18641 | MS.gene61440:intergenic | 30.0% |
| ! | GGGAATGAATTTGCATATTT+TGG | - | 15220:19042-19061 | MS.gene61440:intron | 30.0% |
| ! | GGTTTTTGTCGAATACAAAA+GGG | - | 15220:16111-16130 | MS.gene61440:CDS | 30.0% |
| ! | GTTTTTGTCGAATACAAAAG+GGG | - | 15220:16112-16131 | MS.gene61440:CDS | 30.0% |
| ! | TCATTTTGTATGACTCAGAT+TGG | - | 15220:18364-18383 | MS.gene61440:CDS | 30.0% |
| ! | TGATAAAGCCTAACTTTTTG+AGG | + | 15220:18153-18172 | MS.gene61440:intergenic | 30.0% |
| ! | TGGTTTTTGTCGAATACAAA+AGG | - | 15220:16110-16129 | MS.gene61440:CDS | 30.0% |
| ! | TGTTTAAGGTTTAATCCTGT+CGG | - | 15220:17103-17122 | MS.gene61440:intron | 30.0% |
| ! | TTAGATAGCTTAGAAAGTGT+GGG | + | 15220:16751-16770 | MS.gene61440:intergenic | 30.0% |
| ! | TTTTACAACTTCAACTGGAA+GGG | + | 15220:19708-19727 | MS.gene61440:intergenic | 30.0% |
| !! | ATTAGTCTCTGTAGGATTTT+GGG | - | 15220:17173-17192 | MS.gene61440:intron | 30.0% |
| !! | TCTCTTCTTTTAAGAATTGG+AGG | + | 15220:16232-16251 | MS.gene61440:intergenic | 30.0% |
| !! | TGCTCTCTTCTTTTAAGAAT+TGG | + | 15220:16235-16254 | MS.gene61440:intergenic | 30.0% |
| !!! | GCAAAGGACCAATTTTTTTA+TGG | + | 15220:19578-19597 | MS.gene61440:intergenic | 30.0% |
| !!! | TACTCTTGTTTTCCCATTAT+TGG | - | 15220:17254-17273 | MS.gene61440:CDS | 30.0% |
| !!! | TTTTAGGTTGTGTTGTTTGA+AGG | - | 15220:19662-19681 | MS.gene61440:intron | 30.0% |
| AAAGACTCTCTTACAGTAAG+GGG | + | 15220:19185-19204 | MS.gene61440:intergenic | 35.0% | |
| AAGAATAGGCAAAGATTACG+TGG | - | 15220:16523-16542 | MS.gene61440:intron | 35.0% | |
| AATTTACTGATCTGAACCTG+GGG | + | 15220:19740-19759 | MS.gene61440:intergenic | 35.0% | |
| ACAATTACAATACTTCCTGC+AGG | - | 15220:17868-17887 | MS.gene61440:intron | 35.0% | |
| ACATCGAAATAGACGAAAAG+AGG | - | 15220:20339-20358 | MS.gene61440:intron | 35.0% | |
| ACCAAAATGTCTAAAGAAGG+TGG | - | 15220:18908-18927 | MS.gene61440:intron | 35.0% | |
| ACGCATCATAATACACTTTG+AGG | + | 15220:19928-19947 | MS.gene61440:intergenic | 35.0% | |
| ACTATATACCAGTCTTCCTA+TGG | - | 15220:18175-18194 | MS.gene61440:CDS | 35.0% | |
| ACTCAAATAAACACAGACAC+GGG | - | 15220:17635-17654 | MS.gene61440:intron | 35.0% | |
| AGAAAAGAGAGACACAAACA+TGG | - | 15220:16594-16613 | MS.gene61440:intron | 35.0% | |
| ATACCTTCCAACTCTTTACT+CGG | - | 15220:20280-20299 | MS.gene61440:intron | 35.0% | |
| ATAGATAAGTGGTTGTCGTA+TGG | - | 15220:18078-18097 | MS.gene61440:intron | 35.0% | |
| ATCTTGGACAGATGAAACTT+GGG | + | 15220:17986-18005 | MS.gene61440:intergenic | 35.0% | |
| CAAAGTGTATTATGATGCGT+GGG | - | 15220:19928-19947 | MS.gene61440:intron | 35.0% | |
| CAACCACTTATCTATAGACT+CGG | + | 15220:18073-18092 | MS.gene61440:intergenic | 35.0% | |
| CACTATTCATAGAAGAGACA+TGG | + | 15220:16139-16158 | MS.gene61440:intergenic | 35.0% | |
| CGATGTTTAGTAGATGTTGA+GGG | + | 15220:20325-20344 | MS.gene61440:intergenic | 35.0% | |
| CTACATTACCAACTATCTTG+GGG | + | 15220:19544-19563 | MS.gene61440:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+AGG | + | 15220:16679-16698 | MS.gene61440:intergenic | 35.0% | |
| GCTACATTACCAACTATCTT+GGG | + | 15220:19545-19564 | MS.gene61440:intergenic | 35.0% | |
| GGGACAAATATATACAGTCA+TGG | - | 15220:19948-19967 | MS.gene61440:intron | 35.0% | |
| GTAATTTACTGATCTGAACC+TGG | + | 15220:19742-19761 | MS.gene61440:intergenic | 35.0% | |
| GTCAAAGTTTCAACCGAAAA+AGG | + | 15220:18881-18900 | MS.gene61440:intergenic | 35.0% | |
| TAGATAAGTGGTTGTCGTAT+GGG | - | 15220:18079-18098 | MS.gene61440:intron | 35.0% | |
| TCAAAGTGTATTATGATGCG+TGG | - | 15220:19927-19946 | MS.gene61440:intron | 35.0% | |
| TCGATGTTTAGTAGATGTTG+AGG | + | 15220:20326-20345 | MS.gene61440:intergenic | 35.0% | |
| TGACAGAACCTCAAAAAGTT+AGG | - | 15220:18142-18161 | MS.gene61440:intron | 35.0% | |
| TGCAACAAAAAAGTCAGCAA+AGG | + | 15220:16559-16578 | MS.gene61440:intergenic | 35.0% | |
| TGCTACATTACCAACTATCT+TGG | + | 15220:19546-19565 | MS.gene61440:intergenic | 35.0% | |
| TTTACAACTTCAACTGGAAG+GGG | + | 15220:19707-19726 | MS.gene61440:intergenic | 35.0% | |
| ! | AAGCCATGATCTTCCTTTTT+CGG | - | 15220:18865-18884 | MS.gene61440:intron | 35.0% |
| ! | ACAGCTTTTACAACTTCAAC+TGG | + | 15220:19713-19732 | MS.gene61440:intergenic | 35.0% |
| ! | ACCACCTTCTTTAGACATTT+TGG | + | 15220:18912-18931 | MS.gene61440:intergenic | 35.0% |
| ! | ATGTTTTCTTTCCAGTATCG+TGG | - | 15220:18833-18852 | MS.gene61440:intron | 35.0% |
| ! | CACTCATTGCAAGATTTTGA+CGG | - | 15220:17432-17451 | MS.gene61440:intron | 35.0% |
| ! | CTTTTACAACTTCAACTGGA+AGG | + | 15220:19709-19728 | MS.gene61440:intergenic | 35.0% |
| ! | GACATTTTATGTGGAATCTC+AGG | + | 15220:17678-17697 | MS.gene61440:intergenic | 35.0% |
| ! | GACTTCCTTTTCCAAATGAT+TGG | - | 15220:18436-18455 | MS.gene61440:CDS | 35.0% |
| ! | GTTTAAGGTTTAATCCTGTC+GGG | - | 15220:17104-17123 | MS.gene61440:intron | 35.0% |
| !! | GAATTGAGTTGGCATCAAAT+TGG | - | 15220:17306-17325 | MS.gene61440:intron | 35.0% |
| !! | GATTTTTATTTGACGGCTGA+AGG | - | 15220:18596-18615 | MS.gene61440:intron | 35.0% |
| !! | GTTAGTTTGTTACAACCTAG+TGG | + | 15220:17713-17732 | MS.gene61440:intergenic | 35.0% |
| !! | TTCAAGTTGAAGCTTCAACA+AGG | + | 15220:16979-16998 | MS.gene61440:intergenic | 35.0% |
| !!! | GATTAGTCTCTGTAGGATTT+TGG | - | 15220:17172-17191 | MS.gene61440:intron | 35.0% |
| !!! | TTTTTTCTGGTGCAAATCTG+TGG | - | 15220:16482-16501 | MS.gene61440:CDS | 35.0% |
| AAAAGCAGACTGCAAATACC+AGG | + | 15220:19111-19130 | MS.gene61439:intergenic | 40.0% | |
| AAACTAAGAGAGGCTAATCC+AGG | - | 15220:18720-18739 | MS.gene61440:intron | 40.0% | |
| AAGACTCTCTTACAGTAAGG+GGG | + | 15220:19184-19203 | MS.gene61440:intergenic | 40.0% | |
| AAGCATACCTGCCAATCATT+TGG | + | 15220:18450-18469 | MS.gene61440:intergenic | 40.0% | |
| AATAGGCAAAGATTACGTGG+CGG | - | 15220:16526-16545 | MS.gene61440:intron | 40.0% | |
| ACAATACTTCCTGCAGGTAA+TGG | - | 15220:17874-17893 | MS.gene61440:intron | 40.0% | |
| ACCTGCCAATCATTTGGAAA+AGG | + | 15220:18444-18463 | MS.gene61440:intergenic | 40.0% | |
| AGAAGACATACCTCCTTTAG+TGG | - | 15220:18242-18261 | MS.gene61440:CDS | 40.0% | |
| AGAATAAGCTCCACATGAAG+TGG | + | 15220:19353-19372 | MS.gene61440:intergenic | 40.0% | |
| ATGTACCTGACTTAGAGAAG+TGG | + | 15220:16786-16805 | MS.gene61440:intergenic | 40.0% | |
| ATTGGATTTAGTGCTCCTCA+AGG | - | 15220:18382-18401 | MS.gene61440:CDS | 40.0% | |
| CAACCGAAAAAGGAAGATCA+TGG | + | 15220:18871-18890 | MS.gene61440:intergenic | 40.0% | |
| CAATCTCACTTTCACACCAT+AGG | + | 15220:18194-18213 | MS.gene61440:intergenic | 40.0% | |
| CGTCAAAATCTTGCAATGAG+TGG | + | 15220:17434-17453 | MS.gene61440:intergenic | 40.0% | |
| CTCAAATAAACACAGACACG+GGG | - | 15220:17636-17655 | MS.gene61440:intron | 40.0% | |
| CTGAAATTCCCCAAGATAGT+TGG | - | 15220:19533-19552 | MS.gene61440:intron | 40.0% | |
| GAAATTGTAGTAGGGTGCAA+TGG | + | 15220:16643-16662 | MS.gene61440:intergenic | 40.0% | |
| GATCCTTCTGTTAACAAGCA+CGG | - | 15220:19632-19651 | MS.gene61440:intron | 40.0% | |
| GATCTTGGACAGATGAAACT+TGG | + | 15220:17987-18006 | MS.gene61440:intergenic | 40.0% | |
| GCCTAAAACTTATCTCAGAG+AGG | + | 15220:16957-16976 | MS.gene61440:intergenic | 40.0% | |
| GCTACACTTTCTCATTCTGT+TGG | - | 15220:17552-17571 | MS.gene61440:intron | 40.0% | |
| GGACCTTTGCTTGACAAAAT+TGG | - | 15220:18027-18046 | MS.gene61440:intron | 40.0% | |
| GTTGCTAATGATGAATTGCC+TGG | - | 15220:19090-19109 | MS.gene61440:intron | 40.0% | |
| TCGAGATGACAAAGTGTGTT+TGG | - | 15220:18687-18706 | MS.gene61440:intron | 40.0% | |
| TGTACCTGACTTAGAGAAGT+GGG | + | 15220:16785-16804 | MS.gene61440:intergenic | 40.0% | |
| TTTGAATTTGGCCTGATGCT+GGG | + | 15220:18217-18236 | MS.gene61440:intergenic | 40.0% | |
| ! | CAAGCACGGATGATACTTTT+AGG | - | 15220:19646-19665 | MS.gene61440:intron | 40.0% |
| ! | TCCTTTTCCAAATGATTGGC+AGG | - | 15220:18440-18459 | MS.gene61440:CDS | 40.0% |
| ! | TGGTATTTGCAGTCTGCTTT+TGG | - | 15220:19110-19129 | MS.gene61440:intron | 40.0% |
| !! | ATTTTGGGTCTGTGGGATTT+AGG | - | 15220:17188-17207 | MS.gene61440:intron | 40.0% |
| !! | TATTTGCAGTCTGCTTTTGG+TGG | - | 15220:19113-19132 | MS.gene61440:intron | 40.0% |
| !!! | GCCTCTCTGAGATAAGTTTT+AGG | - | 15220:16953-16972 | MS.gene61440:intron | 40.0% |
| AAATAAACACAGACACGGGG+AGG | - | 15220:17639-17658 | MS.gene61440:intron | 45.0% | |
| AATAAACACAGACACGGGGA+GGG | - | 15220:17640-17659 | MS.gene61440:intron | 45.0% | |
| ACAGGCTTCTGTGCTATATG+TGG | + | 15220:17528-17547 | MS.gene61440:intergenic | 45.0% | |
| ACCTCATCATCAGACATTCC+AGG | + | 15220:20145-20164 | MS.gene61440:intergenic | 45.0% | |
| CATCGAGCCGTTTAAATTGC+AGG | - | 15220:20090-20109 | MS.gene61440:intron | 45.0% | |
| CATGAACTTCCATTACCTGC+AGG | + | 15220:17886-17905 | MS.gene61440:intergenic | 45.0% | |
| CTTCCAACTCTTTACTCGGA+GGG | - | 15220:20284-20303 | MS.gene61440:intron | 45.0% | |
| CTTTCACACCATAGGAAGAC+TGG | + | 15220:18186-18205 | MS.gene61440:intergenic | 45.0% | |
| CTTTGAATTTGGCCTGATGC+TGG | + | 15220:18218-18237 | MS.gene61440:intergenic | 45.0% | |
| CTTTGCCTATTCTTGCTCTC+TGG | + | 15220:16517-16536 | MS.gene61440:intergenic | 45.0% | |
| GAAAAGAGGAACCCTATCCT+AGG | - | 15220:20353-20372 | MS.gene61440:intron | 45.0% | |
| GAAGTCAAGAGCAAAGACGA+GGG | + | 15220:18422-18441 | MS.gene61440:intergenic | 45.0% | |
| GATGCATGGATGTTACAACC+AGG | + | 15220:20071-20090 | MS.gene61440:intergenic | 45.0% | |
| GCAGGCTGAAATTGCTATGA+GGG | - | 15220:20108-20127 | MS.gene61440:intron | 45.0% | |
| GGTAACTTCATCTTGGTACC+TGG | + | 15220:19005-19024 | MS.gene61440:intergenic | 45.0% | |
| TCAATTTCAGGCCATGTCGA+AGG | + | 15220:19158-19177 | MS.gene61440:intergenic | 45.0% | |
| TCATTGCTTGTGCTCTGTTC+AGG | - | 15220:20217-20236 | MS.gene61440:intron | 45.0% | |
| TCCAGGAAATGCACTTCTTG+AGG | - | 15220:18737-18756 | MS.gene61440:intron | 45.0% | |
| TCGACATGGCCTGAAATTGA+AGG | - | 15220:19158-19177 | MS.gene61440:intron | 45.0% | |
| TGATGCCAACTCAATTCACG+CGG | + | 15220:17303-17322 | MS.gene61440:intergenic | 45.0% | |
| TGCAGGCTGAAATTGCTATG+AGG | - | 15220:20107-20126 | MS.gene61440:intron | 45.0% | |
| TGGCCGAGTCTATAGATAAG+TGG | - | 15220:18067-18086 | MS.gene61440:intron | 45.0% | |
| TGTAAAAGCTGTTGATCCCC+AGG | - | 15220:19721-19740 | MS.gene61440:intron | 45.0% | |
| TTAAACGGCTCGATGATGCA+TGG | + | 15220:20085-20104 | MS.gene61440:intergenic | 45.0% | |
| TTCCAGCATTTCCACGATAC+TGG | + | 15220:18847-18866 | MS.gene61440:intergenic | 45.0% | |
| TTCCAGTATCGTGGAAATGC+TGG | - | 15220:18842-18861 | MS.gene61440:intron | 45.0% | |
| TTCTACCGCGTGAATTGAGT+TGG | - | 15220:17295-17314 | MS.gene61440:intron | 45.0% | |
| TTCTGGTGCAAATCTGTGGT+TGG | - | 15220:16486-16505 | MS.gene61440:CDS | 45.0% | |
| TTGTTTGAAGGCTGGATGCT+TGG | - | 15220:19674-19693 | MS.gene61440:intron | 45.0% | |
| ! | ACCTCAAGAAGTGCATTTCC+TGG | + | 15220:18741-18760 | MS.gene61440:intergenic | 45.0% |
| ! | ATCAAATTGGTCTGACCTGC+CGG | - | 15220:17319-17338 | MS.gene61440:intron | 45.0% |
| ! | CATCCGTGCTTGTTAACAGA+AGG | + | 15220:19638-19657 | MS.gene61440:intergenic | 45.0% |
| ! | CCAAAGGTTCTGATTGAGGA+GGG | + | 15220:17476-17495 | MS.gene61440:intergenic | 45.0% |
| ! | GACAGCATTGAGCACAAGAA+GGG | - | 15220:17928-17947 | MS.gene61440:intron | 45.0% |
| ! | GGAAGGTATGCATTGTATGC+TGG | + | 15220:20269-20288 | MS.gene61440:intergenic | 45.0% |
| ! | GTCTCCAAAGGTTCTGATTG+AGG | + | 15220:17480-17499 | MS.gene61440:intergenic | 45.0% |
| ! | GTGCAAATCTGTGGTTGGTT+GGG | - | 15220:16491-16510 | MS.gene61440:intron | 45.0% |
| ! | TCCAAAGGTTCTGATTGAGG+AGG | + | 15220:17477-17496 | MS.gene61440:intergenic | 45.0% |
| ! | TCCTGGAATGTCTGATGATG+AGG | - | 15220:20141-20160 | MS.gene61440:intron | 45.0% |
| ! | TGACAGCATTGAGCACAAGA+AGG | - | 15220:17927-17946 | MS.gene61440:intron | 45.0% |
| ! | TGAGAAAGTGTAGCAGCAAC+AGG | + | 15220:17546-17565 | MS.gene61440:intergenic | 45.0% |
| ! | TGGTTTCAGTGGTGGTGAAA+GGG | + | 15220:17399-17418 | MS.gene61440:intergenic | 45.0% |
| !! | AATTGGTTTGACGCCAGAGA+AGG | - | 15220:18044-18063 | MS.gene61440:intron | 45.0% |
| !! | AGGTTGTGTTGTTTGAAGGC+TGG | - | 15220:19666-19685 | MS.gene61440:intron | 45.0% |
| !! | CTGCAGGTAATGGAAGTTCA+TGG | - | 15220:17884-17903 | MS.gene61440:intron | 45.0% |
| !! | CTGTAGGATTTTGGGTCTGT+GGG | - | 15220:17181-17200 | MS.gene61440:intron | 45.0% |
| !! | TCTGTAGGATTTTGGGTCTG+TGG | - | 15220:17180-17199 | MS.gene61440:intron | 45.0% |
| !! | TTCGAGGGATTAGTCTCTGT+AGG | - | 15220:17165-17184 | MS.gene61440:intron | 45.0% |
| !!! | ATCATTTTTTTTTTTTAAAT+TGG | - | 15220:17595-17614 | MS.gene61440:intron | 5.0% |
| AAGTGAGATTGCCCAGCATC+AGG | - | 15220:18203-18222 | MS.gene61440:CDS | 50.0% | |
| ACCACTTGTGAACTGCCATC+CGG | + | 15220:17341-17360 | MS.gene61440:intergenic | 50.0% | |
| ACCCAAGCTGTGTCTATCAG+TGG | - | 15220:19990-20009 | MS.gene61440:intron | 50.0% | |
| ATAAACACAGACACGGGGAG+GGG | - | 15220:17641-17660 | MS.gene61440:intron | 50.0% | |
| ATCCTCTCATGAACGCAGTG+CGG | - | 15220:17784-17803 | MS.gene61440:intron | 50.0% | |
| CACACCCACTTCTCTAAGTC+AGG | - | 15220:16778-16797 | MS.gene61440:intron | 50.0% | |
| CCCTCCTCAATCAGAACCTT+TGG | - | 15220:17473-17492 | MS.gene61440:intron | 50.0% | |
| CCTCCGAGTAAAGAGTTGGA+AGG | + | 15220:20286-20305 | MS.gene61440:intergenic | 50.0% | |
| CCTTCCAACTCTTTACTCGG+AGG | - | 15220:20283-20302 | MS.gene61440:intron | 50.0% | |
| CTTGTGCTCAATGCTGTCAG+CGG | + | 15220:17926-17945 | MS.gene61440:intergenic | 50.0% | |
| GAAACTTGGGCAGGTGATGA+AGG | + | 15220:17973-17992 | MS.gene61440:intergenic | 50.0% | |
| GAAATTGCTATGAGGGAGGC+AGG | - | 15220:20115-20134 | MS.gene61440:intron | 50.0% | |
| GCAATGAGTGGTTCACTGTC+CGG | + | 15220:17422-17441 | MS.gene61440:intergenic | 50.0% | |
| GCCACTGATAGACACAGCTT+GGG | + | 15220:19994-20013 | MS.gene61440:intergenic | 50.0% | |
| GGAAGTCAAGAGCAAAGACG+AGG | + | 15220:18423-18442 | MS.gene61440:intergenic | 50.0% | |
| GGCTGAAATTGCTATGAGGG+AGG | - | 15220:20111-20130 | MS.gene61440:intron | 50.0% | |
| GGTATGCATTGTATGCTGGC+AGG | + | 15220:20265-20284 | MS.gene61440:intergenic | 50.0% | |
| GGTGCAAATCTGTGGTTGGT+TGG | - | 15220:16490-16509 | MS.gene61440:intron | 50.0% | |
| GTAAGGGGGCCTTCAATTTC+AGG | + | 15220:19170-19189 | MS.gene61440:intergenic | 50.0% | |
| GTTGTCTTTCCACAGCCTTG+AGG | + | 15220:18400-18419 | MS.gene61440:intergenic | 50.0% | |
| TGGACAGATGAAACTTGGGC+AGG | + | 15220:17982-18001 | MS.gene61440:intergenic | 50.0% | |
| TGTTGAGGGTCTGATCCACT+CGG | + | 15220:20311-20330 | MS.gene61440:intergenic | 50.0% | |
| TTATTTGACGGCTGAAGGCC+AGG | - | 15220:18601-18620 | MS.gene61440:intron | 50.0% | |
| TTCACCACCACTGAAACCAC+CGG | - | 15220:17400-17419 | MS.gene61440:intron | 50.0% | |
| TTGGGCCAGAGAGCAAGAAT+AGG | - | 15220:16509-16528 | MS.gene61440:intron | 50.0% | |
| TTTAGTGCTCCTCAAGGCTG+TGG | - | 15220:18388-18407 | MS.gene61440:CDS | 50.0% | |
| ! | AGAACCTTTGGAGACCACCT+TGG | - | 15220:17485-17504 | MS.gene61440:CDS | 50.0% |
| ! | ATCGTGCTGATCCTTCGACA+TGG | - | 15220:19144-19163 | MS.gene61440:intron | 50.0% |
| ! | CGCTGCGAGGACATTTTATG+TGG | + | 15220:17687-17706 | MS.gene61440:intergenic | 50.0% |
| ! | GAACCTTTGGAGACCACCTT+GGG | - | 15220:17486-17505 | MS.gene61440:CDS | 50.0% |
| ! | GTGGTTTCAGTGGTGGTGAA+AGG | + | 15220:17400-17419 | MS.gene61440:intergenic | 50.0% |
| !! | ATTTTGACGGCTAGTCCCAC+CGG | - | 15220:17445-17464 | MS.gene61440:intron | 50.0% |
| !! | CAGTCTGCTTTTGGTGGAAG+AGG | - | 15220:19119-19138 | MS.gene61440:intron | 50.0% |
| AACCTAGTGGTTTCGCTGCG+AGG | + | 15220:17700-17719 | MS.gene61440:intergenic | 55.0% | |
| ATAGACTCGGCCACCTTCTC+TGG | + | 15220:18060-18079 | MS.gene61440:intergenic | 55.0% | |
| ATGAGTGGTTCACTGTCCGG+TGG | + | 15220:17419-17438 | MS.gene61440:intergenic | 55.0% | |
| CACTTTCATACGCACCCGAC+AGG | + | 15220:17121-17140 | MS.gene61440:intergenic | 55.0% | |
| CGCCACTGATAGACACAGCT+TGG | + | 15220:19995-20014 | MS.gene61440:intergenic | 55.0% | |
| CTGATTGAGGAGGGACTGTC+CGG | + | 15220:17467-17486 | MS.gene61440:intergenic | 55.0% | |
| GATGAGGTATGTCGCTCGCA+CGG | - | 15220:20157-20176 | MS.gene61440:intron | 55.0% | |
| GGACCCTCCGAGTAAAGAGT+TGG | + | 15220:20290-20309 | MS.gene61440:intergenic | 55.0% | |
| TAAACACAGACACGGGGAGG+GGG | - | 15220:17642-17661 | MS.gene61440:intron | 55.0% | |
| TATCAGTGGCGCTTGCAGGT+AGG | - | 15220:20004-20023 | MS.gene61440:intron | 55.0% | |
| TCACTGTCCGGTGGTTTCAG+TGG | + | 15220:17410-17429 | MS.gene61440:intergenic | 55.0% | |
| TGGTTTGACGCCAGAGAAGG+TGG | - | 15220:18047-18066 | MS.gene61440:intron | 55.0% | |
| TGTCTATCAGTGGCGCTTGC+AGG | - | 15220:20000-20019 | MS.gene61440:intron | 55.0% | |
| ! | AATTGGTCTGACCTGCCGGA+TGG | - | 15220:17323-17342 | MS.gene61440:intron | 55.0% |
| ACGCCCAAGGTGGTCTCCAA+AGG | + | 15220:17492-17511 | MS.gene61440:intergenic | 60.0% | |
| ATGAGGGAGGCAGGCAATCC+TGG | - | 15220:20124-20143 | MS.gene61440:intron | 60.0% | |
| ATTGAGGAGGGACTGTCCGG+TGG | + | 15220:17464-17483 | MS.gene61440:intergenic | 60.0% | |
| CTGTCCGGTGGTTTCAGTGG+TGG | + | 15220:17407-17426 | MS.gene61440:intergenic | 60.0% | |
| CTTGTGAACTGCCATCCGGC+AGG | + | 15220:17337-17356 | MS.gene61440:intergenic | 60.0% | |
| CTTTACTCGGAGGGTCCGAG+TGG | - | 15220:20293-20312 | MS.gene61440:intron | 60.0% | |
| GACCGCACTGCGTTCATGAG+AGG | + | 15220:17789-17808 | MS.gene61440:intergenic | 60.0% | |
| GCCGGATGGCAGTTCACAAG+TGG | - | 15220:17337-17356 | MS.gene61440:intron | 60.0% | |
| GTCCTCGCAGCGAAACCACT+AGG | - | 15220:17695-17714 | MS.gene61440:intron | 60.0% | |
| GTGCTCAATGCTGTCAGCGG+TGG | + | 15220:17923-17942 | MS.gene61440:intergenic | 60.0% | |
| TTGAGGAGGGACTGTCCGGT+GGG | + | 15220:17463-17482 | MS.gene61440:intergenic | 60.0% | |
| TTTGGAGACCACCTTGGGCG+TGG | - | 15220:17491-17510 | MS.gene61440:CDS | 60.0% | |
| ACCACCTTGGGCGTGGTGGT+TGG | - | 15220:17498-17517 | MS.gene61440:CDS | 65.0% | |
| AGACACGGGGAGGGGGAATG+TGG | - | 15220:17649-17668 | MS.gene61440:intron | 65.0% | |
| CTCTCCAACCACCACGCCCA+AGG | + | 15220:17505-17524 | MS.gene61440:intergenic | 65.0% | |
| TCCAACCACCACGCCCAAGG+TGG | + | 15220:17502-17521 | MS.gene61440:intergenic | 65.0% | |
| GGAGACCACCTTGGGCGTGG+TGG | - | 15220:17494-17513 | MS.gene61440:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15220 | gene | 16028 | 20382 | 16028 | ID=MS.gene61440 |
| 15220 | mRNA | 16028 | 20382 | 16028 | ID=MS.gene61440.t1;Parent=MS.gene61440 |
| 15220 | exon | 20373 | 20382 | 20373 | ID=MS.gene61440.t1.exon1;Parent=MS.gene61440.t1 |
| 15220 | CDS | 20373 | 20382 | 20373 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 18147 | 18520 | 18147 | ID=MS.gene61440.t1.exon2;Parent=MS.gene61440.t1 |
| 15220 | CDS | 18147 | 18520 | 18147 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 17949 | 18028 | 17949 | ID=MS.gene61440.t1.exon3;Parent=MS.gene61440.t1 |
| 15220 | CDS | 17949 | 18028 | 17949 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 17788 | 17839 | 17788 | ID=MS.gene61440.t1.exon4;Parent=MS.gene61440.t1 |
| 15220 | CDS | 17788 | 17839 | 17788 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 17652 | 17693 | 17652 | ID=MS.gene61440.t1.exon5;Parent=MS.gene61440.t1 |
| 15220 | CDS | 17652 | 17693 | 17652 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 17484 | 17562 | 17484 | ID=MS.gene61440.t1.exon6;Parent=MS.gene61440.t1 |
| 15220 | CDS | 17484 | 17562 | 17484 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 17373 | 17404 | 17373 | ID=MS.gene61440.t1.exon7;Parent=MS.gene61440.t1 |
| 15220 | CDS | 17373 | 17404 | 17373 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 17220 | 17288 | 17220 | ID=MS.gene61440.t1.exon8;Parent=MS.gene61440.t1 |
| 15220 | CDS | 17220 | 17288 | 17220 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 16668 | 16742 | 16668 | ID=MS.gene61440.t1.exon9;Parent=MS.gene61440.t1 |
| 15220 | CDS | 16668 | 16742 | 16668 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 16389 | 16505 | 16389 | ID=MS.gene61440.t1.exon10;Parent=MS.gene61440.t1 |
| 15220 | CDS | 16389 | 16505 | 16389 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 16248 | 16298 | 16248 | ID=MS.gene61440.t1.exon11;Parent=MS.gene61440.t1 |
| 15220 | CDS | 16248 | 16298 | 16248 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| 15220 | exon | 16028 | 16171 | 16028 | ID=MS.gene61440.t1.exon12;Parent=MS.gene61440.t1 |
| 15220 | CDS | 16028 | 16171 | 16028 | ID=cds.MS.gene61440.t1;Parent=MS.gene61440.t1 |
| Gene Sequence |
| Protein sequence |
