AlfalfaGEDB | MS.gene056657

M. sativa cultivar XinJiangDaYe / MS.gene056657

KEGG: -
GO: -
PFAM: PF13460.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056657.t1	XP_024637320.1	89.6	654	50	2	1	650	1	640	6.20E-265	923.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056657.t1	Q8SKU2	71.2	553	122	6	1	541	3	530	1.6e-197	690.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056657.t1	A0A072UX22	89.2	655	52	3	1	650	1	641	3.5e-262	913.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene056657	0.835916	1.27E-56	-1.69E-46
MS.gene049171	MS.gene056657	0.918167	2.17E-86	-1.69E-46
MS.gene049173	MS.gene056657	0.878088	3.73E-69	-1.69E-46
MS.gene049217	MS.gene056657	0.917204	7.06E-86	-1.69E-46
MS.gene049222	MS.gene056657	0.940216	3.41E-100	-1.69E-46
MS.gene049232	MS.gene056657	0.898469	5.15E-77	-1.69E-46
MS.gene049281	MS.gene056657	-0.805698	1.18E-49	-1.69E-46
MS.gene049285	MS.gene056657	0.969875	9.05E-131	-1.69E-46
MS.gene049320	MS.gene056657	0.979129	2.70E-147	-1.69E-46
MS.gene049369	MS.gene056657	0.814132	1.80E-51	-1.69E-46

Showing 1 to 10 of 2,181 entries

Previous1 2 3 4 5…219Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056657.t1	MTR_4g068970	93.282	655	25	3	1	650	1	641	0.0	1150
MS.gene056657.t1	MTR_4g115730	34.505	313	163	11	22	322	7	289	1.55e-33	130
MS.gene056657.t1	MTR_4g115730	35.878	262	129	10	76	322	12	249	2.76e-31	122
MS.gene056657.t1	MTR_4g064750	27.376	263	163	8	75	323	97	345	7.24e-19	90.9
MS.gene056657.t1	MTR_8g010700	34.911	169	83	8	97	258	93	241	1.74e-15	78.6
MS.gene056657.t1	MTR_4g021815	47.297	74	38	1	179	252	107	179	1.44e-13	71.6
MS.gene056657.t1	MTR_7g062140	37.500	96	56	2	179	274	181	272	2.46e-12	68.9

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056657.t1	AT3G18890	49.269	684	241	18	9	646	13	636	0.0	538
MS.gene056657.t1	AT2G34460	35.897	273	141	10	63	325	32	280	6.02e-32	125
MS.gene056657.t1	AT3G46780	29.851	268	154	9	75	323	89	341	2.12e-15	79.7
MS.gene056657.t1	AT4G31530	30.088	226	121	11	97	304	93	299	1.37e-13	72.8
MS.gene056657.t1	AT4G31530	30.088	226	121	11	97	304	93	299	1.64e-13	72.4
MS.gene056657.t1	AT2G37660	40.860	93	50	3	172	261	168	258	8.12e-13	70.5
MS.gene056657.t1	AT5G02240	41.975	81	32	2	179	252	105	177	5.61e-12	67.0

Showing 1 to 7 of 7 entries

Previous1Next

Find 193 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCGGCTTACGCTGCAAA+AGG	0.509111	4.3:-36288939	None:intergenic
AAATACATCTTCTGTGGGTT+CGG	0.438355	4.3:+36290310	MS.gene056657:CDS
AAATACTAAGTTATCATCCT+TGG	0.436502	4.3:-36286649	None:intergenic
AAATCAACTTACATTGCATA+AGG	0.428183	4.3:-36289342	None:intergenic
AACAACTTCCTCAAAAGGGA+AGG	0.609863	4.3:+36288905	MS.gene056657:CDS
AACAGAACAACCAGAACCAG+TGG	0.608935	4.3:+36288569	MS.gene056657:CDS
AACAGAACAACCGAAACCAG+TGG	0.657563	4.3:+36288623	MS.gene056657:CDS
AACAGATTGGATCAGCATTA+GGG	0.436120	4.3:+36287476	MS.gene056657:CDS
AACTGAAGATACTTTGTTTG+GGG	0.562205	4.3:+36288094	MS.gene056657:CDS
AAGCTTGATGGTACAAGTGC+AGG	0.457446	4.3:+36287323	MS.gene056657:CDS

Showing 1 to 10 of 193 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCGTACATCAATTAAC+AGG	-	chr4.3:36288451-36288470	None:intergenic	30.0%
AACAGGAATGTTAAACTACT+AGG	-	chr4.3:36288434-36288453	None:intergenic	30.0%
AAGTGAGTGAATAAGTCTTA+TGG	+	chr4.3:36289504-36289523	MS.gene056657:intron	30.0%
ACATTGATGTAGGATTAACA+TGG	-	chr4.3:36289825-36289844	None:intergenic	30.0%
ACCTTATCGAATAGATTACA+TGG	+	chr4.3:36287561-36287580	MS.gene056657:CDS	30.0%
AGTTGTGATAGTTTCATTCA+GGG	+	chr4.3:36286787-36286806	MS.gene056657:intron	30.0%
ATCACCACAAAATTAGAAAG+CGG	-	chr4.3:36288958-36288977	None:intergenic	30.0%
ATTGATGAATGTACTAGGTT+AGG	+	chr4.3:36289529-36289548	MS.gene056657:intron	30.0%
CATTCCTGTTAATTGATGTA+CGG	+	chr4.3:36288444-36288463	MS.gene056657:intron	30.0%
CCAAATTAAAGAGGTTTAGA+TGG	-	chr4.3:36289018-36289037	None:intergenic	30.0%

Showing 1 to 10 of 346 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	36286340	36290855	36286340	ID=MS.gene056657
chr4.3	mRNA	36286340	36290855	36286340	ID=MS.gene056657.t1;Parent=MS.gene056657
chr4.3	exon	36286340	36286523	36286340	ID=MS.gene056657.t1.exon1;Parent=MS.gene056657.t1
chr4.3	CDS	36286340	36286523	36286340	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36286613	36286712	36286613	ID=MS.gene056657.t1.exon2;Parent=MS.gene056657.t1
chr4.3	CDS	36286613	36286712	36286613	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36286808	36286880	36286808	ID=MS.gene056657.t1.exon3;Parent=MS.gene056657.t1
chr4.3	CDS	36286808	36286880	36286808	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36287308	36287353	36287308	ID=MS.gene056657.t1.exon4;Parent=MS.gene056657.t1
chr4.3	CDS	36287308	36287353	36287308	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36287431	36287607	36287431	ID=MS.gene056657.t1.exon5;Parent=MS.gene056657.t1
chr4.3	CDS	36287431	36287607	36287431	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36287704	36287785	36287704	ID=MS.gene056657.t1.exon6;Parent=MS.gene056657.t1
chr4.3	CDS	36287704	36287785	36287704	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36287864	36287936	36287864	ID=MS.gene056657.t1.exon7;Parent=MS.gene056657.t1
chr4.3	CDS	36287864	36287936	36287864	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36288026	36288136	36288026	ID=MS.gene056657.t1.exon8;Parent=MS.gene056657.t1
chr4.3	CDS	36288026	36288136	36288026	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36288224	36288376	36288224	ID=MS.gene056657.t1.exon9;Parent=MS.gene056657.t1
chr4.3	CDS	36288224	36288376	36288224	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36288480	36288673	36288480	ID=MS.gene056657.t1.exon10;Parent=MS.gene056657.t1
chr4.3	CDS	36288480	36288673	36288480	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36288761	36288949	36288761	ID=MS.gene056657.t1.exon11;Parent=MS.gene056657.t1
chr4.3	CDS	36288761	36288949	36288761	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36289152	36289352	36289152	ID=MS.gene056657.t1.exon12;Parent=MS.gene056657.t1
chr4.3	CDS	36289152	36289352	36289152	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36290265	36290579	36290265	ID=MS.gene056657.t1.exon13;Parent=MS.gene056657.t1
chr4.3	CDS	36290265	36290579	36290265	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1
chr4.3	exon	36290801	36290855	36290801	ID=MS.gene056657.t1.exon14;Parent=MS.gene056657.t1
chr4.3	CDS	36290801	36290855	36290801	ID=cds.MS.gene056657.t1;Parent=MS.gene056657.t1

Gene Sequence

>MS.gene056657

ATGGAGGCTTTCTCACTCACCTCAACTACCATTCCCTCCTCTCTAACACGTAGAGAGGCTGCAGCTGTTAAACCTTCTGGCCATGTCAACCTTTCCAAATACTCACATTTCATGAACTACCCTTTCACCACAACACCTTCCAGGAGTAGAATCCGTAGCAATATCATAAGAGCTCAAGTTTCAGGTGATAGGATTTTCTTCTTCTTATTTTAGTGTGCGTGTGTGTGATTTTGACCTGTATGAATGTTAAACATGTATATATCTTCATTCAAGGTTCAACAAAATCTAGTACTGCTGAGAAAAAAGATTCCAAGGATGATAACTTAGTATTTGTTGCTGGTGCTACCGGAAAAGTTGGTTCAAGAACAGTCAGGTACATTTGTTTTTCCACCATAGTACTGAACTTGATTCACCTTTTGAGATAGTAACTTTGTTTACAAAATGCTGAGTTGTGATAGTTTCATTCAGGGAGCTTATAAAGCTTGGTTTTAAAGTCAGAGCTGGAGTAAGGAGTGCTCAGAGAGCTGGTGCATTGGTTCAGGTAATAGAAAGGCTACTCTGTGGTGGTGATTTAACTAATGGAATATTTGGATTATTTGAGTTTATCTACTGGCATAAGCACTTGTGAGATTGTTTATGAGAGCTTACAGAAATAGCTTATGACATGTCCATAAGCTGTTTTCATCTTATTTTCATATGCTCATCGGGATAAACCAACAGCCAGGCATAAGCTCAGGATAGCTTATCAAAACATCTTATAGCTTATATGAAAACATTTTGGCCTTATTGTATTTGTTATAGAAATAGCATATACGTAATCACTTACTATATGATAAGTGTGTATGCTATAAACGCTTGATTAAGTTGTTTGTCTAAACAATGCCTAAGTGACATGACTAATAGTAATAATTAACTTCTTAAAACGGATAATTGGATATGCATTAAAGATATGAATATATCGTGTGCAGAGTGTTAAACAATTGAAGCTTGATGGTACAAGTGCAGGGAGTGAAGGTAAGCCAAGAATGTTTTTCTCATTGACAAAAATGCTGCTGTGTTGGATAACAGAATGTTTTTGGTTTTTAGCCCAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAGCCAGAACAGATTGGATCAGCATTAGGGAATGCATCAAAGGTGATATGCACCATTGGTGCCAGTGAGAAGGAAATTTTCGACATTACCGGACCTTATCGAATAGATTACATGGCCGCCAAAAACCTAGTTGATGCTGGTAACAAGAGCTTTCATTATGGTTATGTTTCAATGCTATTTGTTTTAGGCTTAAATGTTGAAAGCAAATGTTTTTGTTCATTGTGTCATGATGCAGCATCTGTTGCCAAAGTAAATCACTTCATATTGGTTACTTCACTGGGAACAAACAAATTTGGTTTTCCTGCAGCTATTCTCAAGTGAGTATGAAATTAAGCTTACTCATCATGTTCACATCATAAAGTAGTTCAACTGATTTCTTAGTTCTATTTTTGTAGTTTATTTTGGGGAGTCTTGTGTTGGAAAAGGAAGGCAGAGGAAGCATTGCTAGCAAGTGGAATTCCATACACAGTAAGTCATTGTGATACTAATTACACCGAAGCGCAGCGCAGGGTCCTAATTATCTTATTTTTATGTTATTGTCATGACACTCTTTTCAGATAGTGAGGCCTGGAGGCATGGAGAGGCCTACTGATGCTTACAAGGAAACTCATAATGTAACCCTATCAACTGAAGATACTTTGTTTGGGGGACAAGTGTCAAACCTTCAGGTACTTATCATGTAAAACGTTTTCATATACGTAACTATCGATTTAAGATATATAGATATATGGAAGTTGATAACTCTCTCAATTCAGGTTGCTGAACTCATGGCAGCCATGGCTAAGAATCCGGAACTTTCATATTGTAAAATAGTGGAGGTCATTGCCGAGACAACTGCGCCATTGACACCTGCAGAAAAACTTCTTGCAAAGATACCTTCTCAACGCCCTTACATTCCTTCGCCCAAGGTAAGTACTTCCGTATATAATACATTTTGTGACGTGTATTTTGAACTCCTCCTGCCTAGTAGTTTAACATTCCTGTTAATTGATGTACGGTTTTCTTTGGAAGGTACAGGAACCAGATACTGCAGCTGTCAGTAATCCAGCTCCCTCGGCTAATGTCACGGAAGCAGTACCTAGTATTTCCCCTCAGAAAGAAACAGAACAACCAGAACCAGTGGCAGAAGTGCCTAGCATTACTCCTCAGAAAGAAACAGAACAACCGAAACCAGTGGCAAAACAGCCGCTTTCTCCTTATACTGCGTAAGCCAGATTGCTAATATTTGTTGACAGTCAATTTTTATGTGGACTATGGAGGCCAAATAACTAAGTTGGTATATACATTTTCAGTTATGATGATTTAAAACCACCGTCATCCCCTTCTCCAGTCAAGCCTAGTGACAAGAAACAGATAAATATCAGTGATGCAGTGCCAACACCTAGTTCTTCAGATGCTCCAAGTAACATTCCAGAAATAGATGTCATTTCTCAGACAACAACTTCCTCAAAAGGGAAGGAGTCTCTTTCTCCTTTTGCAGCGTAAGCCGCTTTCTAATTTTGTGGTGATATCATATGTTAGTACACATTATCTATCATCTAATTTCCCATCTAAACCTCTTTAATTTGGCAGCTATGAGGATTTAAAACCTGCAGATACCTTGTTATGAACTACTTTAGCACTTTTATCCGTGGTATCCTAAATTTGTGGTTTGTTTTCCTTGTGTATTTTATATACCTGCAGATATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAACTACATCAATATCCACATCTTCTGTGGGTGAGGTGGCCAAGATTGAGGAAGTATCAAGTAATGGCCCAGCTCAACTTTCAGTGGAAGACACCCCACAGGATGATGGACAGAATCTCCATGAGCCAAAGTCAAGACCACTTTCACCTTATGCAATGTAAGTTGATTTCAATTCCTTTAACTTTTTCTTAGTTCTTCACCAAATGCTCTCCATTCCTTATTATAGAAGAAAGAGAGGGGATGGTGAGATAGCTGTTCAGGACACATTGGCTTATTATAACTGTGACTTTGATTTTTGGTTGAAATTCAAGTGAGTGAATAAGTCTTATGGTAATTGATGAATGTACTAGGTTAGGACTATATAAGTGAGAAGATGATTAAGCCAAAAGCATCAAGGATTCATGGCTTTGAATCAATATGTAGTGCGAAATTTACTATTGTGGTTTCTAACGAGTGAATAGACAAATTGTTCCTCGAAATTGTAAGCATCAGTAGAAATAGTCCCTGATTTTTGCGAATTTGGAAATACATCCCTGAAATTGTAAAATGTTTGTCAAAATAGTCTCACTGTAAACTTTTAGTGGTAGGGACTATGACATGACATGTTAACTGAATACGTAGCTCTTCCATGTTAATCCTACATCAATGTCGCCACACCAAAGACTAATTTGCCTATGAAATTTAGGTCTTCAGAGACCTTCACAATTGCAATCACTAAAAAAATTGTCCTTGAGATGGCCTAAATTTCATATGCAAATTAGCTCCTAGTGAGTTGGCCTTGATGTGGTTTCAAAGTGCAGTGTGATAACTTCAGTTAACGTGTCACATTATAGCCTCTTACGAAAGAAGTTAACTAAGGGACTTTTTTGAACAACATTTTACAATTTCATGGATGTATTTGTCAATTTGCAAAAAGGAGGGAGTATTTTGACCAAATCATACAATTTTGAGGACAGGTTTTTCTATTTACTCAGTTTCTAACTTATCATATGTAAGATCAAAACTTTGTGGACAGGTTTAGCACAATTCGTGGTATCAAAACTTTGTGGTTTGTTTTTCTTGTGTACAGGTATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAAATACATCTTCTGTGGGTTCGGTGCCCAATATTGATGCAGTATCAACATCTTCAGTGGGTGGGGTGCCCAATACTGATGCAGTATCCATATCTTCTGTGAGTGAGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATATTGATGCAGTATCAAGCAATGGACCAGCCCAACTCTCAGTGGAAGATACACCAAAGGAGGATGGACAGGATCTCCATGAACCAAAGTCAAGACCACTTTCACCTTTTGCAATGTAAGTTGATTCCAACTTACCATCAATTTTTCTTATTTCTTCTCCAAAGATTCTTCATTCGTTATTATAGAAGATAGAAAGAGAGGAGCCTGAATTCCCCAAGGTCAAGGAATCCTGCAGTCATGCAGTCACTGCATTGGAAGCCGTTTGATTGATATCGGATGGTCTAGATTTAGTTGTATAGTAGTGACATTATGATCTTATGCAAATGAACTTTTCAGGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCCTTCAGACAATCCTAG

Protein sequence

>MS.gene056657.t1

MEAFSLTSTTIPSSLTRREAAAVKPSGHVNLSKYSHFMNYPFTTTPSRSRIRSNIIRAQVSGSTKSSTAEKKDSKDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGVRSAQRAGALVQSVKQLKLDGTSAGSEAVEKLEIVECDLEKPEQIGSALGNASKVICTIGASEKEIFDITGPYRIDYMAAKNLVDAASVAKVNHFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAELMAAMAKNPELSYCKIVEVIAETTAPLTPAEKLLAKIPSQRPYIPSPKVQEPDTAAVSNPAPSANVTEAVPSISPQKETEQPEPVAEVPSITPQKETEQPKPVAKQPLSPYTAYDDLKPPSSPSPVKPSDKKQINISDAVPTPSSSDAPSNIPEIDVISQTTTSSKGKESLSPFAAYPDLKPPSSPSPNAPTTSISTSSVGEVAKIEEVSSNGPAQLSVEDTPQDDGQNLHEPKSRPLSPYAMYPDLKPPSSPSPNAPNTSSVGSVPNIDAVSTSSVGGVPNTDAVSISSVSEVPNIDAVSTSSVGGVPNIDAVSSNGPAQLSVEDTPKEDGQDLHEPKSRPLSPFAMYEDLKPPASPSPSFRQS