AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049805


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049805.t1 MTR_2g020820 97.076 342 5 2 1 337 1 342 0.0 652
MS.gene049805.t1 MTR_4g118510 64.756 349 105 5 2 337 1 344 3.45e-142 406
MS.gene049805.t1 MTR_4g118510 63.324 349 104 6 2 337 1 338 3.62e-136 390
MS.gene049805.t1 MTR_4g118510 60.068 293 99 5 2 281 1 288 4.53e-99 294
MS.gene049805.t1 MTR_4g118510 58.703 293 98 6 2 281 1 283 1.29e-93 280
MS.gene049805.t1 MTR_0260s0030 42.105 342 163 7 10 337 22 342 1.32e-69 221
MS.gene049805.t1 MTR_0260s0030 36.864 236 122 6 10 239 22 236 3.33e-31 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049805.t1 AT4G15545 57.353 340 119 8 6 337 16 337 3.69e-116 340
MS.gene049805.t1 AT1G16520 40.950 337 172 5 10 337 7 325 3.52e-74 232
MS.gene049805.t1 AT1G56080 40.870 345 145 7 7 333 4 307 6.58e-68 215

Find 72 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAAGCTGATGAGATCTT+TGG 0.305279 2.2:+64453287 MS.gene049805:CDS
TTCAGCAAGTGCAAGCTTAT+CGG 0.335011 2.2:-64451137 None:intergenic
CATCGCAGAGCTGGAAGCTC+AGG 0.340681 2.2:+64451081 MS.gene049805:CDS
TAATGCGAGGAGTCGTAGTT+TGG 0.347026 2.2:-64452404 None:intergenic
GATCTGTATACTATATTTGA+AGG 0.396057 2.2:+64453323 MS.gene049805:CDS
TTCTTGTCTCAGCACGAACT+CGG 0.404189 2.2:+64452723 MS.gene049805:intron
CGGTTTCCCTTCAAATTGAC+AGG 0.406170 2.2:+64452508 MS.gene049805:CDS
ATTTCCTGCATCAGAAGTAT+TGG 0.424653 2.2:-64452138 None:intergenic
TGCAGCTATGTTACATAGTC+AGG 0.425161 2.2:+64451950 MS.gene049805:CDS
AGAAAGCTGATGAGATCTTT+GGG 0.427930 2.2:+64453288 MS.gene049805:CDS
GATGATGCTTGAGATCTTAC+AGG 0.430804 2.2:-64452357 None:intergenic
GTTTGCATTGAAGAAGATCT+AGG 0.432984 2.2:-64452116 None:intergenic
AGGAGTTCTTTCGCCAAGTC+AGG 0.433049 2.2:+64452756 MS.gene049805:CDS
CCAAAGACCCTTACCTGACT+TGG 0.448544 2.2:-64452769 None:intergenic
AATGCGAGGAGTCGTAGTTT+GGG 0.451995 2.2:-64452403 None:intergenic
GCAGGTTTAGATGTTCTTGA+TGG 0.455452 2.2:-64452468 None:intergenic
GTTATAGGAGAAATTGTTGA+AGG 0.457411 2.2:+64451281 MS.gene049805:intron
AGACGAGCTCATCGCAGAGC+TGG 0.457689 2.2:+64451072 MS.gene049805:CDS
AAAACTTGCAGCAACTCCTC+TGG 0.458979 2.2:-64450929 None:intergenic
AAGAAGTCCTGTCAATTTGA+AGG 0.461711 2.2:-64452515 None:intergenic
GATACAGATGCAGAAACAAT+AGG 0.464230 2.2:-64452444 None:intergenic
CGTTTGTCTTATGAGCAGTT+TGG 0.470820 2.2:+64453105 MS.gene049805:CDS
GTACAGTGAGGAAGCTCAGT+AGG 0.476497 2.2:+64451322 MS.gene049805:CDS
ACTGGTTCAATGTCTAGCTC+TGG 0.504686 2.2:+64452552 MS.gene049805:CDS
TGCACTTGCTGAACAAGATA+AGG 0.510112 2.2:+64451147 MS.gene049805:CDS
AGGGAAACCGCATGGCGCCT+TGG 0.511504 2.2:-64452495 None:intergenic
CAAACCAATACTTCTGATGC+AGG 0.521825 2.2:+64452134 MS.gene049805:CDS
ACTCCTCGCATTAGTCCTCC+TGG 0.526413 2.2:+64452414 MS.gene049805:CDS
TCTTGTCTCAGCACGAACTC+GGG 0.530657 2.2:+64452724 MS.gene049805:intron
GTAGAGCAGAAACTTCTGAT+TGG 0.533919 2.2:-64451030 None:intergenic
GCCACATCGAGTTGCTCGAA+TGG 0.535989 2.2:-64450962 None:intergenic
TTCCCACAAACAAACAAAAG+AGG 0.537066 2.2:+64453158 MS.gene049805:CDS
ATCGAGTTGCTCGAATGGAT+CGG 0.539898 2.2:-64450957 None:intergenic
AGAAGTCCTGTCAATTTGAA+GGG 0.540242 2.2:-64452514 None:intergenic
TCAGCACGAACTCGGGTGGA+TGG 0.544471 2.2:+64452731 MS.gene049805:intron
CAAACTGCTCATAAGACAAA+CGG 0.554300 2.2:-64453104 None:intergenic
CATCTAAACCTGCGTCTCCA+AGG 0.554770 2.2:+64452478 MS.gene049805:CDS
ACGAACTCGGGTGGATGGAA+AGG 0.563045 2.2:+64452736 MS.gene049805:CDS
ACCACTTCCACATCTCAGCT+TGG 0.564003 2.2:+64451978 MS.gene049805:CDS
ACTTCCACATCTCAGCTTGG+AGG 0.564335 2.2:+64451981 MS.gene049805:CDS
TGTAACATAGCTGCAATGTT+GGG 0.565145 2.2:-64451942 None:intergenic
GCAACTCCTCTGGAATATCA+AGG 0.570101 2.2:-64450919 None:intergenic
TGTCTCAGCACGAACTCGGG+TGG 0.573547 2.2:+64452727 MS.gene049805:intron
TCAATGTCTAGCTCTGGCAC+AGG 0.576331 2.2:+64452558 MS.gene049805:CDS
ATGTAACATAGCTGCAATGT+TGG 0.581127 2.2:-64451943 None:intergenic
GCTCAGTAGGGATGTCTCCA+AGG 0.581456 2.2:+64451335 MS.gene049805:CDS
TACAGTGAGGAAGCTCAGTA+GGG 0.584079 2.2:+64451323 MS.gene049805:CDS
TCCAAGCTGAGATGTGGAAG+TGG 0.584301 2.2:-64451979 None:intergenic
GCATGGCGCCTTGGAGACGC+AGG 0.586987 2.2:-64452486 None:intergenic
GAAACAATAGGAGGTGAACC+AGG 0.588601 2.2:-64452432 None:intergenic
GCTAGACATTGAACCAGTAG+AGG 0.593995 2.2:-64452547 None:intergenic
TGCAGGAAATTCCTTTGCAG+AGG 0.596634 2.2:+64452151 MS.gene049805:CDS
CAATTTGAAGGGAAACCGCA+TGG 0.598917 2.2:-64452503 None:intergenic
AGTACCTCCAAGCTGAGATG+TGG 0.600275 2.2:-64451985 None:intergenic
AGAGAAGAACATGTTGGTGG+CGG 0.608636 2.2:+64450880 None:intergenic
ACTTATGCAATCACTTCAAG+AGG 0.616703 2.2:+64451475 MS.gene049805:CDS
ATCGCAGAGCTGGAAGCTCA+GGG 0.620221 2.2:+64451082 MS.gene049805:CDS
AAGAGAGAAGAACATGTTGG+TGG 0.623218 2.2:+64450877 None:intergenic
CAGCTTCAGAAAGAGCAGCA+TGG 0.627433 2.2:-64451114 None:intergenic
AGTTGCTCGAATGGATCGGA+TGG 0.637945 2.2:-64450953 None:intergenic
TGATTGACGATCCTCTGCAA+AGG 0.640007 2.2:-64452162 None:intergenic
TCAGAAAGAGCAGCATGGAG+AGG 0.647214 2.2:-64451109 None:intergenic
GACACGTGTTGAAAGTGCAA+TGG 0.649684 2.2:-64450999 None:intergenic
TCCATTCGAGCAACTCGATG+TGG 0.650261 2.2:+64450961 MS.gene049805:CDS
TGCGTCTCCAAGGCGCCATG+CGG 0.654382 2.2:+64452488 MS.gene049805:CDS
TTCGAACCTTGATATTCCAG+AGG 0.660160 2.2:+64450913 MS.gene049805:CDS
ACAGATGCAGAAACAATAGG+AGG 0.674096 2.2:-64452441 None:intergenic
ATGTTGGTGGCGGAATTGAG+TGG 0.699161 2.2:+64450890 MS.gene049805:CDS
GAACCAGGAGGACTAATGCG+AGG 0.700895 2.2:-64452417 None:intergenic
CTTCACTTTCTAGTACAGTG+AGG 0.701338 2.2:+64451310 MS.gene049805:CDS
TGCATTGAAGAAGATCTAGG+TGG 0.725090 2.2:-64452113 None:intergenic
ACAATAGGAGGTGAACCAGG+AGG 0.746649 2.2:-64452429 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATATATGTATATAAATTA+AGG + chr2.2:64452663-64452682 MS.gene049805:intron 10.0%
!!! AAATTATATGCAATTAATTT+TGG - chr2.2:64452069-64452088 None:intergenic 10.0%
!!! TCTTAAATTTTAATTTGTTT+TGG + chr2.2:64451241-64451260 MS.gene049805:intron 10.0%
!! AAATATTAATAACAACTTAC+AGG - chr2.2:64451512-64451531 None:intergenic 15.0%
!! AACAAATAATTATTGAAAGT+TGG - chr2.2:64452606-64452625 None:intergenic 15.0%
!! ATTAATCATCTAATTAATAC+AGG + chr2.2:64452205-64452224 MS.gene049805:intron 15.0%
!! ATTAATTAAACCAAAACTAA+TGG - chr2.2:64451772-64451791 None:intergenic 15.0%
!! ATTAGATGATTAATGATATT+TGG - chr2.2:64452199-64452218 None:intergenic 15.0%
!! TAATTAATAAAAATTAACCC+TGG + chr2.2:64451784-64451803 MS.gene049805:intron 15.0%
!! TATATGATCACTTTAATTAA+TGG + chr2.2:64452639-64452658 MS.gene049805:intron 15.0%
!!! AATTTTCATTTTAGTAAATG+AGG + chr2.2:64451390-64451409 MS.gene049805:intron 15.0%
!!! ATTTGCATGAAATTTTTATT+TGG + chr2.2:64451207-64451226 MS.gene049805:intron 15.0%
!!! CAATTAAGCATTTTAAAAAA+TGG - chr2.2:64451816-64451835 None:intergenic 15.0%
!!! TTAATTATAAGTGTCTATTT+TGG - chr2.2:64452268-64452287 None:intergenic 15.0%
!! ACAAATGTTACCATAAAAAA+GGG - chr2.2:64453207-64453226 None:intergenic 20.0%
!! ATTCAAATATAGTTAACAAG+AGG + chr2.2:64451871-64451890 MS.gene049805:intron 20.0%
!! GAGGTTAATTAATGTTATAA+TGG + chr2.2:64451409-64451428 MS.gene049805:intron 20.0%
!! TACAAATGTTACCATAAAAA+AGG - chr2.2:64453208-64453227 None:intergenic 20.0%
!! TTAATATGAATATATGCAGT+TGG + chr2.2:64451436-64451455 MS.gene049805:intron 20.0%
!!! GGATTAATATTTTTCAATAG+AGG + chr2.2:64451564-64451583 MS.gene049805:intron 20.0%
! AACATGTAGAAATAAGTGAA+AGG - chr2.2:64453069-64453088 None:intergenic 25.0%
! AATTTCACAAACACAACAAA+AGG - chr2.2:64453254-64453273 None:intergenic 25.0%
! CAAATGTTACCATAAAAAAG+GGG - chr2.2:64453206-64453225 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr2.2:64452886-64452905 MS.gene049805:intron 25.0%
! GAAAAATATTAATCCAGACA+AGG - chr2.2:64451559-64451578 None:intergenic 25.0%
! GAGATTGTGTAAATTGTTAT+AGG + chr2.2:64451266-64451285 MS.gene049805:intron 25.0%
! GATCTGTATACTATATTTGA+AGG + chr2.2:64453323-64453342 MS.gene049805:CDS 25.0%
!! GTACTAAGTTCAAATTTTCT+TGG + chr2.2:64451729-64451748 MS.gene049805:intron 25.0%
!! TTATTTTCCAAAAATGTAGC+TGG + chr2.2:64452333-64452352 MS.gene049805:intron 25.0%
!!! AGCATTTTAAAAAATGGAGA+AGG - chr2.2:64451810-64451829 None:intergenic 25.0%
!!! ATGCAATTACTTTTTTCAGT+AGG + chr2.2:64451621-64451640 MS.gene049805:intron 25.0%
!!! TCTACATGTTTGTTATCATT+AGG + chr2.2:64453079-64453098 MS.gene049805:intron 25.0%
!!! TGCAATTACTTTTTTCAGTA+GGG + chr2.2:64451622-64451641 MS.gene049805:intron 25.0%
!!! TGCATTTTTAGCAAATGTTA+AGG + chr2.2:64453128-64453147 MS.gene049805:CDS 25.0%
!!! TTTGATTTTGACATGTAACA+TGG + chr2.2:64451895-64451914 MS.gene049805:intron 25.0%
AAACCAAATTATTTGCACCT+TGG - chr2.2:64451355-64451374 None:intergenic 30.0%
AGTGAAAGGATTCAAAAGTT+AGG - chr2.2:64453055-64453074 None:intergenic 30.0%
ATATGAATATATGCAGTTGG+AGG + chr2.2:64451439-64451458 MS.gene049805:intron 30.0%
GTTATAGGAGAAATTGTTGA+AGG + chr2.2:64451281-64451300 MS.gene049805:intron 30.0%
TGTTCCAAATGAAAAGAACA+TGG + chr2.2:64452042-64452061 MS.gene049805:intron 30.0%
TTATTGAAAGTTGGACATTG+AGG - chr2.2:64452597-64452616 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG + chr2.2:64452960-64452979 MS.gene049805:intron 30.0%
! TTGACATGTAACATGGTTTT+TGG + chr2.2:64451902-64451921 MS.gene049805:intron 30.0%
!! CGTAAAATGACCATTAGTTT+TGG + chr2.2:64451759-64451778 MS.gene049805:intron 30.0%
!!! GTATACAGATCTTTGTTTTC+TGG - chr2.2:64453314-64453333 None:intergenic 30.0%
AAGAAAGCTGATGAGATCTT+TGG + chr2.2:64453287-64453306 MS.gene049805:CDS 35.0%
AAGAAGTCCTGTCAATTTGA+AGG - chr2.2:64452518-64452537 None:intergenic 35.0%
ACTTATGCAATCACTTCAAG+AGG + chr2.2:64451475-64451494 MS.gene049805:CDS 35.0%
AGAAAGCTGATGAGATCTTT+GGG + chr2.2:64453288-64453307 MS.gene049805:CDS 35.0%
AGAAGTCCTGTCAATTTGAA+GGG - chr2.2:64452517-64452536 None:intergenic 35.0%
ATACTGTTTATGACCTTGTC+TGG + chr2.2:64451543-64451562 MS.gene049805:intron 35.0%
ATGTAACATAGCTGCAATGT+TGG - chr2.2:64451946-64451965 None:intergenic 35.0%
ATGTTACCATAAAAAAGGGG+AGG - chr2.2:64453203-64453222 None:intergenic 35.0%
CAAACTGCTCATAAGACAAA+CGG - chr2.2:64453107-64453126 None:intergenic 35.0%
CATGCAAATTGAACTGAGTT+TGG - chr2.2:64451196-64451215 None:intergenic 35.0%
CCTTTGCTTATAATAGTGAC+CGG - chr2.2:64452851-64452870 None:intergenic 35.0%
GATACAGATGCAGAAACAAT+AGG - chr2.2:64452447-64452466 None:intergenic 35.0%
GTTTGCATTGAAGAAGATCT+AGG - chr2.2:64452119-64452138 None:intergenic 35.0%
TCTCCAAGGTGCAAATAATT+TGG + chr2.2:64451349-64451368 MS.gene049805:intron 35.0%
TGTAACATAGCTGCAATGTT+GGG - chr2.2:64451945-64451964 None:intergenic 35.0%
TGTTGTGTTTGTGAAATTGC+AGG + chr2.2:64453256-64453275 MS.gene049805:intron 35.0%
TTAAAAAATGGAGAAGGCCA+GGG - chr2.2:64451804-64451823 None:intergenic 35.0%
TTCCCACAAACAAACAAAAG+AGG + chr2.2:64453158-64453177 MS.gene049805:CDS 35.0%
TTTAAAAAATGGAGAAGGCC+AGG - chr2.2:64451805-64451824 None:intergenic 35.0%
! ACTGAGTTTGGTTTAGAAAG+TGG - chr2.2:64451184-64451203 None:intergenic 35.0%
! ATTTCCTGCATCAGAAGTAT+TGG - chr2.2:64452141-64452160 None:intergenic 35.0%
! GTTTGGTTTAGAAAGTGGTT+CGG - chr2.2:64451179-64451198 None:intergenic 35.0%
! TCTTCAATGTTTTCCTCTAC+TGG + chr2.2:64452534-64452553 MS.gene049805:CDS 35.0%
! TGGACCATGTTCTTTTCATT+TGG - chr2.2:64452049-64452068 None:intergenic 35.0%
!! CACCTCTTTTGTTTGTTTGT+GGG - chr2.2:64453163-64453182 None:intergenic 35.0%
!! TCACCTCTTTTGTTTGTTTG+TGG - chr2.2:64453164-64453183 None:intergenic 35.0%
ACAGATGCAGAAACAATAGG+AGG - chr2.2:64452444-64452463 None:intergenic 40.0%
CAAACCAATACTTCTGATGC+AGG + chr2.2:64452134-64452153 MS.gene049805:CDS 40.0%
CCGGTCACTATTATAAGCAA+AGG + chr2.2:64452848-64452867 MS.gene049805:intron 40.0%
CGTTTGTCTTATGAGCAGTT+TGG + chr2.2:64453105-64453124 MS.gene049805:CDS 40.0%
GATAGCGCACTTGTTTAATC+TGG + chr2.2:64452994-64453013 MS.gene049805:intron 40.0%
GATGATGCTTGAGATCTTAC+AGG - chr2.2:64452360-64452379 None:intergenic 40.0%
GCACTTGTTTAATCTGGTAG+TGG + chr2.2:64453000-64453019 MS.gene049805:intron 40.0%
GCAGGTTTAGATGTTCTTGA+TGG - chr2.2:64452471-64452490 None:intergenic 40.0%
GTAGAGCAGAAACTTCTGAT+TGG - chr2.2:64451033-64451052 None:intergenic 40.0%
TGCAGCTATGTTACATAGTC+AGG + chr2.2:64451950-64451969 MS.gene049805:CDS 40.0%
TGCATTGAAGAAGATCTAGG+TGG - chr2.2:64452116-64452135 None:intergenic 40.0%
TGCTTAACATATACTCCCTC+CGG + chr2.2:64452829-64452848 MS.gene049805:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2.2:64452964-64452983 MS.gene049805:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr2.2:64452983-64452964 None:intergenic 40.0%
TTCAGCAAGTGCAAGCTTAT+CGG - chr2.2:64451140-64451159 None:intergenic 40.0%
TTCGAACCTTGATATTCCAG+AGG + chr2.2:64450913-64450932 MS.gene049805:CDS 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2.2:64452963-64452982 MS.gene049805:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr2.2:64452982-64452963 None:intergenic 40.0%
! CTTCACTTTCTAGTACAGTG+AGG + chr2.2:64451310-64451329 MS.gene049805:CDS 40.0%
! TACAGGTCCAGCTACATTTT+TGG - chr2.2:64452343-64452362 None:intergenic 40.0%
! TGCACTTGCTGAACAAGATA+AGG + chr2.2:64451147-64451166 MS.gene049805:CDS 40.0%
!!! GTAACATGGTTTTTGGTGCA+GGG + chr2.2:64451909-64451928 MS.gene049805:intron 40.0%
!!! GTATCTCCTCCCCTTTTTTA+TGG + chr2.2:64453194-64453213 MS.gene049805:intron 40.0%
!!! TGTAACATGGTTTTTGGTGC+AGG + chr2.2:64451908-64451927 MS.gene049805:intron 40.0%
AAAACTTGCAGCAACTCCTC+TGG - chr2.2:64450932-64450951 None:intergenic 45.0%
AAAAGGGGAGGAGATACATG+AGG - chr2.2:64453191-64453210 None:intergenic 45.0%
AAAGGGGAGGAGATACATGA+GGG - chr2.2:64453190-64453209 None:intergenic 45.0%
AATGCGAGGAGTCGTAGTTT+GGG - chr2.2:64452406-64452425 None:intergenic 45.0%
CAATTTGAAGGGAAACCGCA+TGG - chr2.2:64452506-64452525 None:intergenic 45.0%
CGGTTTCCCTTCAAATTGAC+AGG + chr2.2:64452508-64452527 MS.gene049805:CDS 45.0%
GAAACAATAGGAGGTGAACC+AGG - chr2.2:64452435-64452454 None:intergenic 45.0%
GCTAGACATTGAACCAGTAG+AGG - chr2.2:64452550-64452569 None:intergenic 45.0%
TAATGCGAGGAGTCGTAGTT+TGG - chr2.2:64452407-64452426 None:intergenic 45.0%
TACAGTGAGGAAGCTCAGTA+GGG + chr2.2:64451323-64451342 MS.gene049805:CDS 45.0%
TCTTTCGCCAAGTCAGGTAA+GGG + chr2.2:64452762-64452781 MS.gene049805:intron 45.0%
TGATTGACGATCCTCTGCAA+AGG - chr2.2:64452165-64452184 None:intergenic 45.0%
TGCAGGAAATTCCTTTGCAG+AGG + chr2.2:64452151-64452170 MS.gene049805:CDS 45.0%
TTCTTGTCTCAGCACGAACT+CGG + chr2.2:64452723-64452742 MS.gene049805:intron 45.0%
TTCTTTCGCCAAGTCAGGTA+AGG + chr2.2:64452761-64452780 MS.gene049805:intron 45.0%
! ACTGGTTCAATGTCTAGCTC+TGG + chr2.2:64452552-64452571 MS.gene049805:CDS 45.0%
! ATCGAGTTGCTCGAATGGAT+CGG - chr2.2:64450960-64450979 None:intergenic 45.0%
! GACACGTGTTGAAAGTGCAA+TGG - chr2.2:64451002-64451021 None:intergenic 45.0%
! GCAGTTGGAGGTTTTCAGAA+AGG + chr2.2:64451451-64451470 MS.gene049805:intron 45.0%
!! GCAACTCCTCTGGAATATCA+AGG - chr2.2:64450922-64450941 None:intergenic 45.0%
!! AATATAATAATTACAATATT+TGG + chr2.2:64451696-64451715 MS.gene049805:intron 5.0%
!! TATATATGTATATAAATTAA+GGG + chr2.2:64452664-64452683 MS.gene049805:intron 5.0%
ACAATAGGAGGTGAACCAGG+AGG - chr2.2:64452432-64452451 None:intergenic 50.0%
ACCACTTCCACATCTCAGCT+TGG + chr2.2:64451978-64451997 MS.gene049805:CDS 50.0%
ACTTCCACATCTCAGCTTGG+AGG + chr2.2:64451981-64452000 MS.gene049805:CDS 50.0%
AGGAGTTCTTTCGCCAAGTC+AGG + chr2.2:64452756-64452775 MS.gene049805:CDS 50.0%
AGTACCTCCAAGCTGAGATG+TGG - chr2.2:64451988-64452007 None:intergenic 50.0%
AGTTGCTCGAATGGATCGGA+TGG - chr2.2:64450956-64450975 None:intergenic 50.0%
CAGCTTCAGAAAGAGCAGCA+TGG - chr2.2:64451117-64451136 None:intergenic 50.0%
CATCTAAACCTGCGTCTCCA+AGG + chr2.2:64452478-64452497 MS.gene049805:CDS 50.0%
CCAAAGACCCTTACCTGACT+TGG - chr2.2:64452772-64452791 None:intergenic 50.0%
CCAAGTCAGGTAAGGGTCTT+TGG + chr2.2:64452769-64452788 MS.gene049805:intron 50.0%
GTACAGTGAGGAAGCTCAGT+AGG + chr2.2:64451322-64451341 MS.gene049805:CDS 50.0%
TCAGAAAGAGCAGCATGGAG+AGG - chr2.2:64451112-64451131 None:intergenic 50.0%
TCCAAGCTGAGATGTGGAAG+TGG - chr2.2:64451982-64452001 None:intergenic 50.0%
TCCATTCGAGCAACTCGATG+TGG + chr2.2:64450961-64450980 MS.gene049805:CDS 50.0%
TCTTGTCTCAGCACGAACTC+GGG + chr2.2:64452724-64452743 MS.gene049805:intron 50.0%
!! ATGTTGGTGGCGGAATTGAG+TGG + chr2.2:64450890-64450909 MS.gene049805:CDS 50.0%
!! TCAATGTCTAGCTCTGGCAC+AGG + chr2.2:64452558-64452577 MS.gene049805:CDS 50.0%
ACGAACTCGGGTGGATGGAA+AGG + chr2.2:64452736-64452755 MS.gene049805:CDS 55.0%
ACTCCTCGCATTAGTCCTCC+TGG + chr2.2:64452414-64452433 MS.gene049805:CDS 55.0%
ATCGCAGAGCTGGAAGCTCA+GGG + chr2.2:64451082-64451101 MS.gene049805:CDS 55.0%
GAACCAGGAGGACTAATGCG+AGG - chr2.2:64452420-64452439 None:intergenic 55.0%
GCGCTATCACTTACTCCCTC+CGG - chr2.2:64452982-64453001 None:intergenic 55.0%
GCTCAGTAGGGATGTCTCCA+AGG + chr2.2:64451335-64451354 MS.gene049805:CDS 55.0%
! GCCACATCGAGTTGCTCGAA+TGG - chr2.2:64450965-64450984 None:intergenic 55.0%
!!! TGGTTTTTGGTGCAGGGAGC+AGG + chr2.2:64451915-64451934 MS.gene049805:intron 55.0%
AGACGAGCTCATCGCAGAGC+TGG + chr2.2:64451072-64451091 MS.gene049805:CDS 60.0%
CATCGCAGAGCTGGAAGCTC+AGG + chr2.2:64451081-64451100 MS.gene049805:CDS 60.0%
TCAGCACGAACTCGGGTGGA+TGG + chr2.2:64452731-64452750 MS.gene049805:intron 60.0%
TGTCTCAGCACGAACTCGGG+TGG + chr2.2:64452727-64452746 MS.gene049805:intron 60.0%
AGGGAAACCGCATGGCGCCT+TGG - chr2.2:64452498-64452517 None:intergenic 65.0%
! TGCGTCTCCAAGGCGCCATG+CGG + chr2.2:64452488-64452507 MS.gene049805:CDS 65.0%
GCATGGCGCCTTGGAGACGC+AGG - chr2.2:64452489-64452508 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 64450890 64453370 64450890 ID=MS.gene049805
chr2.2 mRNA 64450890 64453370 64450890 ID=MS.gene049805.t1;Parent=MS.gene049805
chr2.2 exon 64450890 64451168 64450890 ID=MS.gene049805.t1.exon1;Parent=MS.gene049805.t1
chr2.2 CDS 64450890 64451168 64450890 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64451288 64451356 64451288 ID=MS.gene049805.t1.exon2;Parent=MS.gene049805.t1
chr2.2 CDS 64451288 64451356 64451288 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64451455 64451511 64451455 ID=MS.gene049805.t1.exon3;Parent=MS.gene049805.t1
chr2.2 CDS 64451455 64451511 64451455 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64451930 64452002 64451930 ID=MS.gene049805.t1.exon4;Parent=MS.gene049805.t1
chr2.2 CDS 64451930 64452002 64451930 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64452096 64452188 64452096 ID=MS.gene049805.t1.exon5;Parent=MS.gene049805.t1
chr2.2 CDS 64452096 64452188 64452096 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64452352 64452579 64452352 ID=MS.gene049805.t1.exon6;Parent=MS.gene049805.t1
chr2.2 CDS 64452352 64452579 64452352 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64452735 64452777 64452735 ID=MS.gene049805.t1.exon7;Parent=MS.gene049805.t1
chr2.2 CDS 64452735 64452777 64452735 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64453101 64453179 64453101 ID=MS.gene049805.t1.exon8;Parent=MS.gene049805.t1
chr2.2 CDS 64453101 64453179 64453101 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
chr2.2 exon 64453278 64453370 64453278 ID=MS.gene049805.t1.exon9;Parent=MS.gene049805.t1
chr2.2 CDS 64453278 64453370 64453278 ID=cds.MS.gene049805.t1;Parent=MS.gene049805.t1
Gene Sequence

>MS.gene049805

ATGTTGGTGGCGGAATTGAGTGGTTCGAACCTTGATATTCCAGAGGAGTTGCTGCAAGTTTTACCATCCGATCCATTCGAGCAACTCGATGTGGCTCGCAAAATCACTTCCATTGCACTTTCAACACGTGTCAACACGCTCCAATCAGAAGTTTCTGCTCTACGTGATGAGCTTGTCAAGAAAGACGAGCTCATCGCAGAGCTGGAAGCTCAGGGAGAGCCTCTCCATGCTGCTCTTTCTGAAGCTGCCGATAAGCTTGCACTTGCTGAACAAGATAAGGTCTGAACCGAACCACTTTCTAAACCAAACTCAGTTCAATTTGCATGAAATTTTTATTTGGTTTTATTGTTTTCTTAAATTTTAATTTGTTTTGGTTGAGATTGTGTAAATTGTTATAGGAGAAATTGTTGAAGGAGAATGCTTCACTTTCTAGTACAGTGAGGAAGCTCAGTAGGGATGTCTCCAAGGTGCAAATAATTTGGTTTTCTTAGTCAATTCTTAATTTTCATTTTAGTAAATGAGGTTAATTAATGTTATAATGGATTTTTAATATGAATATATGCAGTTGGAGGTTTTCAGAAAGGCACTTATGCAATCACTTCAAGAGGATGAAGAAAAACCTGTAAGTTGTTATTAATATTTTTCATTTTTTAATACTGTTTATGACCTTGTCTGGATTAATATTTTTCAATAGAGGAAGAGAAGATTATTATTATTATTTAATAAATCTTATGCAATTACTTTTTTCAGTAGGGTTCTTGCTAGTACTCACATTATTCTGTTTTGTCTGAATTAGTTAAAAAAATAATATAATAATTACAATATTTGGTTTTTATAATGTACTAAGTTCAAATTTTCTTGGAGACAGTCGTAAAATGACCATTAGTTTTGGTTTAATTAATAAAAATTAACCCTGGCCTTCTCCATTTTTTAAAATGCTTAATTGTTATTTTCAAATATAGTTTTTATGTTAAAGAATATATTCAAATATAGTTAACAAGAGGATTTGATTTTGACATGTAACATGGTTTTTGGTGCAGGGAGCAGGATCACCCAACATTGCAGCTATGTTACATAGTCAGGCAAGTACCACTTCCACATCTCAGCTTGGAGGTACTTTCAACTCTTTCATCATATATTTATTGATTTTCATGTTCCAAATGAAAAGAACATGGTCCAAAATTAATTGCATATAATTTCTTACAGATGAAGATGCTTCATTGCCACCTAGATCTTCTTCAATGCAAACCAATACTTCTGATGCAGGAAATTCCTTTGCAGAGGATCGTCAATCAGATAGTATGTACCAAATATCATTAATCATCTAATTAATACAGGAATATATAGCGTAGATATAATTTTTCATTTTGTATTACCAAAATAGACACTTATAATTAAGCTTGTTATGCATCTTGATCATTAATTCTTGCATTACTTTTGTTTTTATTTTCCAAAAATGTAGCTGGACCTGTAAGATCTCAAGCATCATCATCACATAATATTTTGTTAGCATCCCAAACTACGACTCCTCGCATTAGTCCTCCTGGTTCACCTCCTATTGTTTCTGCATCTGTATCACCATCAAGAACATCTAAACCTGCGTCTCCAAGGCGCCATGCGGTTTCCCTTCAAATTGACAGGACTTCTTCAATGTTTTCCTCTACTGGTTCAATGTCTAGCTCTGGCACAGGTTTCTGCATGCTACCTCAATGTCCAACTTTCAATAATTATTTGTTTATTTTTGTCACTTATATGATCACTTTAATTAATGGAGTATATATGTATATAAATTAAGGGATGCTTGATGATCATCTACTCACATGTTTTTCTTTTTTCTTGTCTCAGCACGAACTCGGGTGGATGGAAAGGAGTTCTTTCGCCAAGTCAGGTAAGGGTCTTTGGATAAACAACTTAATTAATCACTTATCAAATGCTTAAGTGCTTAACATATACTCCCTCCGGTCACTATTATAAGCAAAGGTTGACTTTTTAAGTTCATTCAATAAATGATGTATGTGGTCTATATATAGACTACATACATCATTTATTGAATGAAATCTAAAAAGTGAACTTTTGCTTATAATAGTGACCGGAGGGAGTAAGTGATAGCGCACTTGTTTAATCTGGTAGTGGTAGCGCACTTGTTTAATTTTGTATTGATACCTAACTTTTGAATCCTTTCACTTATTTCTACATGTTTGTTATCATTAGGAGCCGTTTGTCTTATGAGCAGTTTGGTGCATTTTTAGCAAATGTTAAGGAACTGAATTCCCACAAACAAACAAAAGAGGTGAACACCCTCATGTATCTCCTCCCCTTTTTTATGGTAACATTTGTATCTAAATTTAAGTTAATTGTCTTCCTTTTGTTGTGTTTGTGAAATTGCAGGAGACACTAAAGAAAGCTGATGAGATCTTTGGGCCAGAAAACAAAGATCTGTATACTATATTTGAAGGATTGATTAGTCGCAATGTTCATTAA

Protein sequence

>MS.gene049805.t1

MLVAELSGSNLDIPEELLQVLPSDPFEQLDVARKITSIALSTRVNTLQSEVSALRDELVKKDELIAELEAQGEPLHAALSEAADKLALAEQDKEKLLKENASLSSTVRKLSRDVSKLEVFRKALMQSLQEDEEKPGAGSPNIAAMLHSQASTTSTSQLGDEDASLPPRSSSMQTNTSDAGNSFAEDRQSDTGPVRSQASSSHNILLASQTTTPRISPPGSPPIVSASVSPSRTSKPASPRRHAVSLQIDRTSSMFSSTGSMSSSGTARTRVDGKEFFRQVRSRLSYEQFGAFLANVKELNSHKQTKEETLKKADEIFGPENKDLYTIFEGLISRNVH