Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61986.t1 | XP_003610423.1 | 93.8 | 176 | 11 | 0 | 1 | 176 | 1 | 176 | 4.30E-88 | 334 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61986.t1 | G7JJ63 | 93.8 | 176 | 11 | 0 | 1 | 176 | 1 | 176 | 3.1e-88 | 334.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049396 | MS.gene61986 | 0.817168 | 3.79E-52 | -1.69E-46 |
MS.gene050323 | MS.gene61986 | 0.800283 | 1.55E-48 | -1.69E-46 |
MS.gene050502 | MS.gene61986 | 0.801201 | 1.01E-48 | -1.69E-46 |
MS.gene050697 | MS.gene61986 | 0.846098 | 2.69E-59 | -1.69E-46 |
MS.gene051268 | MS.gene61986 | 0.801857 | 7.39E-49 | -1.69E-46 |
MS.gene05494 | MS.gene61986 | 0.811571 | 6.55E-51 | -1.69E-46 |
MS.gene056387 | MS.gene61986 | 0.838946 | 2.13E-57 | -1.69E-46 |
MS.gene06097 | MS.gene61986 | 0.819905 | 9.09E-53 | -1.69E-46 |
MS.gene061218 | MS.gene61986 | 0.992951 | 1.76E-196 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61986.t1 | MTR_4g132020 | 93.750 | 176 | 11 | 0 | 1 | 176 | 1 | 176 | 1.28e-120 | 338 |
MS.gene61986.t1 | MTR_2g023070 | 51.142 | 219 | 63 | 7 | 1 | 176 | 1 | 218 | 1.72e-55 | 174 |
MS.gene61986.t1 | MTR_7g101250 | 37.705 | 183 | 82 | 8 | 1 | 175 | 1 | 159 | 9.18e-21 | 84.0 |
MS.gene61986.t1 | MTR_2g094410 | 55.952 | 84 | 30 | 2 | 97 | 174 | 72 | 154 | 5.01e-20 | 82.0 |
MS.gene61986.t1 | MTR_4g059320 | 51.190 | 84 | 35 | 2 | 96 | 174 | 75 | 157 | 6.05e-18 | 76.6 |
MS.gene61986.t1 | MTR_2g023390 | 50.602 | 83 | 36 | 3 | 97 | 174 | 72 | 154 | 1.78e-16 | 72.8 |
MS.gene61986.t1 | MTR_2g086660 | 48.810 | 84 | 35 | 3 | 99 | 174 | 170 | 253 | 1.70e-15 | 72.0 |
MS.gene61986.t1 | MTR_2g086660 | 48.193 | 83 | 35 | 3 | 99 | 173 | 170 | 252 | 1.35e-14 | 70.1 |
MS.gene61986.t1 | MTR_3g052330 | 28.415 | 183 | 83 | 5 | 32 | 174 | 22 | 196 | 4.03e-14 | 67.4 |
MS.gene61986.t1 | MTR_7g105130 | 65.217 | 46 | 13 | 1 | 132 | 174 | 170 | 215 | 7.70e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61986.t1 | AT1G11700 | 47.087 | 206 | 74 | 7 | 1 | 176 | 1 | 201 | 2.96e-45 | 148 |
MS.gene61986.t1 | AT1G61930 | 48.529 | 204 | 76 | 9 | 1 | 176 | 1 | 203 | 4.11e-43 | 142 |
MS.gene61986.t1 | AT4G21930 | 46.193 | 197 | 71 | 9 | 1 | 176 | 1 | 183 | 3.28e-38 | 129 |
MS.gene61986.t1 | AT3G45210 | 56.757 | 74 | 30 | 2 | 101 | 174 | 75 | 146 | 8.07e-21 | 84.0 |
MS.gene61986.t1 | AT5G60680 | 35.519 | 183 | 87 | 4 | 1 | 174 | 1 | 161 | 1.62e-19 | 80.9 |
MS.gene61986.t1 | AT4G21970 | 47.059 | 85 | 37 | 3 | 98 | 174 | 59 | 143 | 8.31e-19 | 79.0 |
MS.gene61986.t1 | AT5G03230 | 46.591 | 88 | 34 | 2 | 99 | 174 | 78 | 164 | 2.82e-17 | 75.1 |
MS.gene61986.t1 | AT2G28400 | 48.889 | 90 | 35 | 3 | 96 | 175 | 73 | 161 | 3.90e-17 | 74.7 |
MS.gene61986.t1 | AT4G04630 | 48.315 | 89 | 34 | 3 | 98 | 174 | 78 | 166 | 1.22e-14 | 68.2 |
MS.gene61986.t1 | AT4G26950 | 34.146 | 164 | 76 | 8 | 21 | 174 | 1 | 142 | 9.05e-14 | 65.5 |
MS.gene61986.t1 | AT4G26950 | 34.146 | 164 | 76 | 8 | 21 | 174 | 1 | 142 | 9.05e-14 | 65.5 |
MS.gene61986.t1 | AT3G15040 | 59.184 | 49 | 17 | 1 | 129 | 174 | 193 | 241 | 3.42e-12 | 63.2 |
MS.gene61986.t1 | AT1G29640 | 47.561 | 82 | 31 | 4 | 97 | 174 | 64 | 137 | 7.10e-12 | 60.5 |
Find 62 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCATGAAGTAACCGATTTC+AGG | 0.232378 | 8.2:-2339346 | MS.gene61986:CDS |
GTCGCAAGCGTTTGAGAATC+AGG | 0.306206 | 8.2:-2339216 | MS.gene61986:CDS |
CAATTTCTCTCCCGGCGATT+GGG | 0.307565 | 8.2:-2339279 | MS.gene61986:CDS |
GGTTCCGCCGCATGAGTATT+TGG | 0.311065 | 8.2:-2339036 | MS.gene61986:CDS |
TTTGGCGCGTGGCCGGAAAA+TGG | 0.357971 | 8.2:-2339018 | MS.gene61986:CDS |
CCGGAAAATGGCGGCAAATT+CGG | 0.361903 | 8.2:-2339006 | MS.gene61986:CDS |
CACATCTTCTTCCCTGAAAT+CGG | 0.365661 | 8.2:+2339334 | None:intergenic |
AACCGAAACGAACGGTTGTT+AGG | 0.366911 | 8.2:-2339398 | MS.gene61986:CDS |
CAACCGTTCGTTTCGGTTGG+TGG | 0.379141 | 8.2:+2339403 | None:intergenic |
GGTGGAATCGTTGCATGATA+TGG | 0.383426 | 8.2:-2339081 | MS.gene61986:CDS |
GGGGTGGGTCGGACCTTAAA+AGG | 0.389495 | 8.2:-2338975 | MS.gene61986:CDS |
TTCCTAACAACCGTTCGTTT+CGG | 0.395593 | 8.2:+2339396 | None:intergenic |
GTGCTGATGTTGCAACGTTC+CGG | 0.398619 | 8.2:+2339147 | None:intergenic |
TCAATTTCTCTCCCGGCGAT+TGG | 0.413239 | 8.2:-2339280 | MS.gene61986:CDS |
GACGGGTTCGTGATGCTGTT+TGG | 0.413527 | 8.2:-2338941 | MS.gene61986:CDS |
CTCCAATCCGGCACGTTCAC+CGG | 0.413829 | 8.2:+2339125 | None:intergenic |
CTCAACCATCGAACCCGGTT+TGG | 0.416497 | 8.2:+2338916 | None:intergenic |
GATGCTGTTTGGAACCAAAC+CGG | 0.441060 | 8.2:-2338930 | MS.gene61986:CDS |
ATGTTGCAACGTTCCGGTAC+TGG | 0.447319 | 8.2:+2339153 | None:intergenic |
CACCGGTGAACGTGCCGGAT+TGG | 0.454006 | 8.2:-2339127 | MS.gene61986:CDS |
GAATCGTTCACCACCAGTAC+CGG | 0.485009 | 8.2:-2339166 | MS.gene61986:CDS |
ATGAGTATTTGGCGCGTGGC+CGG | 0.490622 | 8.2:-2339025 | MS.gene61986:CDS |
ATGCTGTTTGGAACCAAACC+GGG | 0.500659 | 8.2:-2338929 | MS.gene61986:CDS |
CGGAGTATCTTACTCCAATC+CGG | 0.504693 | 8.2:+2339113 | None:intergenic |
TAAGATACTCCGAGTTGAAT+CGG | 0.506960 | 8.2:-2339102 | MS.gene61986:CDS |
TCATGAAGTAACCGATTTCA+GGG | 0.508081 | 8.2:-2339345 | MS.gene61986:CDS |
TAACAACCGTTCGTTTCGGT+TGG | 0.515395 | 8.2:+2339400 | None:intergenic |
TGCGCGTGAATCCCAATCGC+CGG | 0.518977 | 8.2:+2339268 | None:intergenic |
GATTCTCAAACGCTTGCGAC+AGG | 0.525300 | 8.2:+2339219 | None:intergenic |
AAAAGGCCGTGATTTGAGAC+GGG | 0.530895 | 8.2:-2338958 | MS.gene61986:CDS |
TATGGATGATGATAACGAAT+CGG | 0.540008 | 8.2:-2339063 | MS.gene61986:CDS |
TGGAACCAAACCGGGTTCGA+TGG | 0.549508 | 8.2:-2338921 | MS.gene61986:CDS |
CACAACGTCAATTTCTCTCC+CGG | 0.549711 | 8.2:-2339287 | MS.gene61986:CDS |
TAAAAGGCCGTGATTTGAGA+CGG | 0.552056 | 8.2:-2338959 | MS.gene61986:CDS |
GCGCGTGAATCCCAATCGCC+GGG | 0.553493 | 8.2:+2339269 | None:intergenic |
GGTTACTTCATGAGTGGTGG+TGG | 0.557686 | 8.2:+2339355 | None:intergenic |
ACGCTTGCGACAGGCCGCCG+TGG | 0.563075 | 8.2:+2339228 | None:intergenic |
GTCGCTAAGTACCATGGCGA+AGG | 0.565479 | 8.2:-2339438 | None:intergenic |
CACGAACCCGTCTCAAATCA+CGG | 0.568944 | 8.2:+2338952 | None:intergenic |
TGATGATAACGAATCGGAGA+TGG | 0.569605 | 8.2:-2339057 | MS.gene61986:CDS |
CAAACCGGGTTCGATGGTTG+AGG | 0.576026 | 8.2:-2338915 | None:intergenic |
GTGGTCACGATCTTCAACCA+TGG | 0.577498 | 8.2:+2339307 | None:intergenic |
CGCGCCAAATACTCATGCGG+CGG | 0.577795 | 8.2:+2339032 | None:intergenic |
ATCAGCACCGGTGAACGTGC+CGG | 0.584228 | 8.2:-2339132 | MS.gene61986:CDS |
TCCACCTCAACCATCGAACC+CGG | 0.586804 | 8.2:+2338911 | None:intergenic |
GGCGCGTGGCCGGAAAATGG+CGG | 0.591649 | 8.2:-2339015 | MS.gene61986:CDS |
GAATTTGCGACCCTTCGCCA+TGG | 0.599300 | 8.2:+2339427 | None:intergenic |
CCGCATGAGTATTTGGCGCG+TGG | 0.607155 | 8.2:-2339029 | MS.gene61986:CDS |
GAACGTTGCAACATCAGCAC+CGG | 0.627010 | 8.2:-2339144 | MS.gene61986:CDS |
GGAAGAAGATGTGTGGTCCA+TGG | 0.635452 | 8.2:-2339324 | MS.gene61986:CDS |
ACGATTCCACCGATTCAACT+CGG | 0.637845 | 8.2:+2339093 | None:intergenic |
TCGCTAAGTACCATGGCGAA+GGG | 0.643376 | 8.2:-2339437 | None:intergenic |
CCACGCGCCAAATACTCATG+CGG | 0.647845 | 8.2:+2339029 | None:intergenic |
ATCGGTTACTTCATGAGTGG+TGG | 0.648620 | 8.2:+2339352 | None:intergenic |
CATTCACGTCGTCACAACCA+CGG | 0.652333 | 8.2:-2339245 | MS.gene61986:CDS |
CGGGAGAGAAATTGACGTTG+TGG | 0.653823 | 8.2:+2339288 | None:intergenic |
TCACCACCAACCGAAACGAA+CGG | 0.658770 | 8.2:-2339406 | MS.gene61986:CDS |
TTGCAACGTTCCGGTACTGG+TGG | 0.660475 | 8.2:+2339156 | None:intergenic |
GATACTCCGAGTTGAATCGG+TGG | 0.676763 | 8.2:-2339099 | MS.gene61986:CDS |
GAAATCGGTTACTTCATGAG+TGG | 0.682994 | 8.2:+2339349 | None:intergenic |
ATTTCAGGGAAGAAGATGTG+TGG | 0.693930 | 8.2:-2339331 | MS.gene61986:CDS |
TCACGTCGTCACAACCACGG+CGG | 0.789082 | 8.2:-2339242 | MS.gene61986:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TATGGATGATGATAACGAAT+CGG | - | chr8.2:2339279-2339298 | MS.gene61986:CDS | 30.0% |
! | TAAGATACTCCGAGTTGAAT+CGG | - | chr8.2:2339240-2339259 | MS.gene61986:CDS | 35.0% |
! | TCATGAAGTAACCGATTTCA+GGG | - | chr8.2:2338997-2339016 | MS.gene61986:CDS | 35.0% |
ATTTCAGGGAAGAAGATGTG+TGG | - | chr8.2:2339011-2339030 | MS.gene61986:CDS | 40.0% | |
CACATCTTCTTCCCTGAAAT+CGG | + | chr8.2:2339011-2339030 | None:intergenic | 40.0% | |
GAAATCGGTTACTTCATGAG+TGG | + | chr8.2:2338996-2339015 | None:intergenic | 40.0% | |
TAAAAGGCCGTGATTTGAGA+CGG | - | chr8.2:2339383-2339402 | MS.gene61986:CDS | 40.0% | |
TTCCTAACAACCGTTCGTTT+CGG | + | chr8.2:2338949-2338968 | None:intergenic | 40.0% | |
! | CTCATGAAGTAACCGATTTC+AGG | - | chr8.2:2338996-2339015 | MS.gene61986:CDS | 40.0% |
! | TCTCAAATCACGGCCTTTTA+AGG | + | chr8.2:2339383-2339402 | None:intergenic | 40.0% |
! | TGATGATAACGAATCGGAGA+TGG | - | chr8.2:2339285-2339304 | MS.gene61986:CDS | 40.0% |
AACCGAAACGAACGGTTGTT+AGG | - | chr8.2:2338944-2338963 | MS.gene61986:CDS | 45.0% | |
ATCGGTTACTTCATGAGTGG+TGG | + | chr8.2:2338993-2339012 | None:intergenic | 45.0% | |
CACAACGTCAATTTCTCTCC+CGG | - | chr8.2:2339055-2339074 | MS.gene61986:CDS | 45.0% | |
GGTGGAATCGTTGCATGATA+TGG | - | chr8.2:2339261-2339280 | MS.gene61986:CDS | 45.0% | |
TAACAACCGTTCGTTTCGGT+TGG | + | chr8.2:2338945-2338964 | None:intergenic | 45.0% | |
! | AAAAGGCCGTGATTTGAGAC+GGG | - | chr8.2:2339384-2339403 | MS.gene61986:CDS | 45.0% |
! | AAATTCGGTTTTCGAAGGGG+TGG | - | chr8.2:2339351-2339370 | MS.gene61986:CDS | 45.0% |
! | AATTCGGTTTTCGAAGGGGT+GGG | - | chr8.2:2339352-2339371 | MS.gene61986:CDS | 45.0% |
! | ATGCTGTTTGGAACCAAACC+GGG | - | chr8.2:2339413-2339432 | MS.gene61986:CDS | 45.0% |
! | CGGAGTATCTTACTCCAATC+CGG | + | chr8.2:2339232-2339251 | None:intergenic | 45.0% |
! | CGGCAAATTCGGTTTTCGAA+GGG | - | chr8.2:2339347-2339366 | MS.gene61986:CDS | 45.0% |
! | GATGCTGTTTGGAACCAAAC+CGG | - | chr8.2:2339412-2339431 | MS.gene61986:CDS | 45.0% |
! | GGCAAATTCGGTTTTCGAAG+GGG | - | chr8.2:2339348-2339367 | MS.gene61986:CDS | 45.0% |
!! | ACGATTCCACCGATTCAACT+CGG | + | chr8.2:2339252-2339271 | None:intergenic | 45.0% |
ATGTTGCAACGTTCCGGTAC+TGG | + | chr8.2:2339192-2339211 | None:intergenic | 50.0% | |
CAATTTCTCTCCCGGCGATT+GGG | - | chr8.2:2339063-2339082 | MS.gene61986:CDS | 50.0% | |
CACGAACCCGTCTCAAATCA+CGG | + | chr8.2:2339393-2339412 | None:intergenic | 50.0% | |
CATTCACGTCGTCACAACCA+CGG | - | chr8.2:2339097-2339116 | MS.gene61986:CDS | 50.0% | |
CCGGAAAATGGCGGCAAATT+CGG | - | chr8.2:2339336-2339355 | MS.gene61986:CDS | 50.0% | |
CGGGAGAGAAATTGACGTTG+TGG | + | chr8.2:2339057-2339076 | None:intergenic | 50.0% | |
GAACGTTGCAACATCAGCAC+CGG | - | chr8.2:2339198-2339217 | MS.gene61986:CDS | 50.0% | |
GAATCGTTCACCACCAGTAC+CGG | - | chr8.2:2339176-2339195 | MS.gene61986:CDS | 50.0% | |
GATTCTCAAACGCTTGCGAC+AGG | + | chr8.2:2339126-2339145 | None:intergenic | 50.0% | |
GGAAGAAGATGTGTGGTCCA+TGG | - | chr8.2:2339018-2339037 | MS.gene61986:CDS | 50.0% | |
GGTTACTTCATGAGTGGTGG+TGG | + | chr8.2:2338990-2339009 | None:intergenic | 50.0% | |
GTCGCAAGCGTTTGAGAATC+AGG | - | chr8.2:2339126-2339145 | MS.gene61986:CDS | 50.0% | |
GTGGTCACGATCTTCAACCA+TGG | + | chr8.2:2339038-2339057 | None:intergenic | 50.0% | |
TCAATTTCTCTCCCGGCGAT+TGG | - | chr8.2:2339062-2339081 | MS.gene61986:CDS | 50.0% | |
TCACCACCAACCGAAACGAA+CGG | - | chr8.2:2338936-2338955 | MS.gene61986:CDS | 50.0% | |
! | GATACTCCGAGTTGAATCGG+TGG | - | chr8.2:2339243-2339262 | MS.gene61986:CDS | 50.0% |
! | GCGGCAAATTCGGTTTTCGA+AGG | - | chr8.2:2339346-2339365 | MS.gene61986:CDS | 50.0% |
! | GTGCTGATGTTGCAACGTTC+CGG | + | chr8.2:2339198-2339217 | None:intergenic | 50.0% |
!! | CCGAATTTGCCGCCATTTTC+CGG | + | chr8.2:2339339-2339358 | None:intergenic | 50.0% |
ATGAGTATTTGGCGCGTGGC+CGG | - | chr8.2:2339317-2339336 | MS.gene61986:CDS | 55.0% | |
CAACCGTTCGTTTCGGTTGG+TGG | + | chr8.2:2338942-2338961 | None:intergenic | 55.0% | |
CCACGCGCCAAATACTCATG+CGG | + | chr8.2:2339316-2339335 | None:intergenic | 55.0% | |
GGTTCCGCCGCATGAGTATT+TGG | - | chr8.2:2339306-2339325 | MS.gene61986:CDS | 55.0% | |
TGGAACCAAACCGGGTTCGA+TGG | - | chr8.2:2339421-2339440 | MS.gene61986:CDS | 55.0% | |
! | GACGGGTTCGTGATGCTGTT+TGG | - | chr8.2:2339401-2339420 | MS.gene61986:CDS | 55.0% |
! | TTGCAACGTTCCGGTACTGG+TGG | + | chr8.2:2339189-2339208 | None:intergenic | 55.0% |
CCGCATGAGTATTTGGCGCG+TGG | - | chr8.2:2339313-2339332 | MS.gene61986:CDS | 60.0% | |
CGCGCCAAATACTCATGCGG+CGG | + | chr8.2:2339313-2339332 | None:intergenic | 60.0% | |
CTCCAATCCGGCACGTTCAC+CGG | + | chr8.2:2339220-2339239 | None:intergenic | 60.0% | |
GGGGTGGGTCGGACCTTAAA+AGG | - | chr8.2:2339367-2339386 | MS.gene61986:CDS | 60.0% | |
TCACGTCGTCACAACCACGG+CGG | - | chr8.2:2339100-2339119 | MS.gene61986:CDS | 60.0% | |
TGCGCGTGAATCCCAATCGC+CGG | + | chr8.2:2339077-2339096 | None:intergenic | 60.0% | |
TTTGGCGCGTGGCCGGAAAA+TGG | - | chr8.2:2339324-2339343 | MS.gene61986:CDS | 60.0% | |
! | CGGTTTTCGAAGGGGTGGGT+CGG | - | chr8.2:2339356-2339375 | MS.gene61986:CDS | 60.0% |
!! | ATCAGCACCGGTGAACGTGC+CGG | - | chr8.2:2339210-2339229 | MS.gene61986:CDS | 60.0% |
CACCGGTGAACGTGCCGGAT+TGG | - | chr8.2:2339215-2339234 | MS.gene61986:CDS | 65.0% | |
GCGCGTGAATCCCAATCGCC+GGG | + | chr8.2:2339076-2339095 | None:intergenic | 65.0% | |
GGCGCGTGGCCGGAAAATGG+CGG | - | chr8.2:2339327-2339346 | MS.gene61986:CDS | 70.0% | |
ACGCTTGCGACAGGCCGCCG+TGG | + | chr8.2:2339117-2339136 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 2338917 | 2339447 | 2338917 | ID=MS.gene61986 |
chr8.2 | mRNA | 2338917 | 2339447 | 2338917 | ID=MS.gene61986.t1;Parent=MS.gene61986 |
chr8.2 | exon | 2338917 | 2339447 | 2338917 | ID=MS.gene61986.t1.exon1;Parent=MS.gene61986.t1 |
chr8.2 | CDS | 2338917 | 2339447 | 2338917 | ID=cds.MS.gene61986.t1;Parent=MS.gene61986.t1 |
Gene Sequence |
Protein sequence |