AlfalfaGEDB | MS.gene62016

M. sativa cultivar XinJiangDaYe / MS.gene62016

KEGG: -
GO: -
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62016.t1	RHN81411.1	64.2	758	162	2	13	697	35	756	1.90E-275	958.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62016.t1	Q9SY66	50.1	501	242	5	73	572	60	553	1.8e-141	504.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62016.t1	A0A396JX52	64.2	758	162	2	13	697	35	756	1.3e-275	958.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene62016.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050026	MS.gene62016	0.808893	2.48E-50	-1.69E-46
MS.gene050750	MS.gene62016	0.818625	1.78E-52	-1.69E-46
MS.gene050953	MS.gene62016	0.80964	1.71E-50	-1.69E-46
MS.gene052447	MS.gene62016	0.81072	1.00E-50	-1.69E-46
MS.gene05329	MS.gene62016	0.80006	1.72E-48	-1.69E-46
MS.gene05415	MS.gene62016	0.818264	2.15E-52	-1.69E-46
MS.gene054405	MS.gene62016	0.800622	1.32E-48	-1.69E-46
MS.gene060572	MS.gene62016	0.800592	1.34E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62016.t1	MTR_3g450850	69.373	271	82	1	31	300	16	286	2.58e-131	392
MS.gene62016.t1	MTR_4g035820	37.736	318	174	6	60	370	74	374	4.31e-52	192
MS.gene62016.t1	MTR_4g035820	33.659	205	108	3	449	653	326	502	7.46e-22	100
MS.gene62016.t1	MTR_3g012160	83.696	92	15	0	210	301	2	93	1.34e-46	160
MS.gene62016.t1	MTR_4g071400	96.203	79	3	0	574	652	43	121	1.29e-43	153
MS.gene62016.t1	MTR_1g070355	32.540	252	150	7	61	306	72	309	7.79e-29	122
MS.gene62016.t1	MTR_6g051425	27.208	283	194	5	62	341	18	291	5.38e-27	113
MS.gene62016.t1	MTR_5g076070	27.917	240	157	7	64	300	56	282	2.53e-23	100
MS.gene62016.t1	MTR_3g095940	74.074	54	14	0	514	567	90	143	3.60e-20	88.2
MS.gene62016.t1	MTR_5g083630	57.143	70	24	1	204	267	7	76	7.24e-18	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62016.t1	AT1G10240	48.000	550	272	7	30	572	11	553	0.0	533
MS.gene62016.t1	AT1G10240	48.000	550	272	7	30	572	11	553	0.0	533
MS.gene62016.t1	AT5G28530	42.545	550	291	4	31	570	27	561	8.97e-160	477
MS.gene62016.t1	AT5G28530	42.545	550	291	4	31	570	27	561	8.97e-160	477
MS.gene62016.t1	AT5G28530	42.364	550	296	4	31	570	27	565	4.16e-159	475
MS.gene62016.t1	AT5G28530	38.148	540	266	7	31	570	27	498	1.07e-124	384
MS.gene62016.t1	AT5G28530	37.963	540	271	7	31	570	27	502	4.99e-124	382
MS.gene62016.t1	AT4G38180	30.255	509	341	6	61	566	73	570	2.95e-68	239
MS.gene62016.t1	AT4G15090	30.408	490	319	10	61	544	51	524	1.04e-67	238
MS.gene62016.t1	AT4G15090	30.408	490	319	10	61	544	51	524	1.04e-67	238

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Find 119 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGGTCGGCCAAA+AGG	0.495104	7.2:-80083311	MS.gene62016:CDS
AAAATCTGTCAAACTTGTTT+TGG	0.261322	7.2:+80084066	None:intergenic
AAAGACAAGTGAACGAGAAC+AGG	0.453486	7.2:-80083465	MS.gene62016:CDS
AAAGGATCAAGACCAAAAGG+AGG	0.655085	7.2:-80083293	MS.gene62016:CDS
AAAGTAATGGTCTCACAGTT+TGG	0.427267	7.2:-80084235	MS.gene62016:CDS
AAAGTCCTTCAAATAAGCTA+AGG	0.560983	7.2:+80084159	None:intergenic
AACCGTTATGAGATGCCTCT+TGG	0.448749	7.2:-80084691	MS.gene62016:CDS
AACGAGAACAGGTTGCCACA+AGG	0.633734	7.2:-80083454	MS.gene62016:CDS
AACGTCACAGTCAGCATTGT+TGG	0.377007	7.2:+80083352	None:intergenic
AAGGATCAAGACCAAAAGGA+GGG	0.611165	7.2:-80083292	MS.gene62016:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCCTTCAAATAAGCTA+AGG	+	chr7.2:80084506-80084525	None:intergenic	30.0%
AAGTCAATAACATTGATGAG+GGG	-	chr7.2:80083213-80083232	MS.gene62016:CDS	30.0%
AATTAAAGAAGCCATTGCAA+TGG	-	chr7.2:80084246-80084265	MS.gene62016:CDS	30.0%
ACAAATTGGAGCATATTGTT+TGG	-	chr7.2:80083876-80083895	MS.gene62016:CDS	30.0%
CAAATTGGAGCATATTGTTT+GGG	-	chr7.2:80083877-80083896	MS.gene62016:CDS	30.0%
CAAGTCAATAACATTGATGA+GGG	-	chr7.2:80083212-80083231	MS.gene62016:CDS	30.0%
CATGTAATAAACTGCAATGA+TGG	-	chr7.2:80085123-80085142	MS.gene62016:CDS	30.0%
GGAAAATGTGTTGTAATATG+AGG	+	chr7.2:80084775-80084794	None:intergenic	30.0%
GTAGTTACTAAGAGAAGAAT+TGG	-	chr7.2:80083497-80083516	MS.gene62016:CDS	30.0%
GTCAAAATTAGAAATCAAGC+TGG	-	chr7.2:80084715-80084734	MS.gene62016:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	80083059	80085625	80083059	ID=MS.gene62016
chr7.2	mRNA	80083059	80085625	80083059	ID=MS.gene62016.t1;Parent=MS.gene62016
chr7.2	exon	80084594	80085625	80084594	ID=MS.gene62016.t1.exon1;Parent=MS.gene62016.t1
chr7.2	CDS	80084594	80085625	80084594	ID=cds.MS.gene62016.t1;Parent=MS.gene62016.t1
chr7.2	exon	80084057	80084500	80084057	ID=MS.gene62016.t1.exon2;Parent=MS.gene62016.t1
chr7.2	CDS	80084057	80084500	80084057	ID=cds.MS.gene62016.t1;Parent=MS.gene62016.t1
chr7.2	exon	80083739	80083981	80083739	ID=MS.gene62016.t1.exon3;Parent=MS.gene62016.t1
chr7.2	CDS	80083739	80083981	80083739	ID=cds.MS.gene62016.t1;Parent=MS.gene62016.t1
chr7.2	exon	80083167	80083519	80083167	ID=MS.gene62016.t1.exon4;Parent=MS.gene62016.t1
chr7.2	CDS	80083167	80083519	80083167	ID=cds.MS.gene62016.t1;Parent=MS.gene62016.t1
chr7.2	exon	80083059	80083080	80083059	ID=MS.gene62016.t1.exon5;Parent=MS.gene62016.t1
chr7.2	CDS	80083059	80083080	80083059	ID=cds.MS.gene62016.t1;Parent=MS.gene62016.t1

Gene Sequence

>MS.gene62016

ATGATATCTGAAGTAAGCAATGATGCTAGTGATTGGCCCTTGCCTCAGGTCACTAACATTGATGGGTGGGTTCCTTTTGAAGGGCAAATATTTGAAGATGATGAATATGTAAATTCTTTAACATTTCAAGAGCTACAACATGAACCCTTGCCTCAAGTCAATAACATTGATGAGGGGATTCCTTTTGAAGGGAAAATATTTGAAAGTGATAATGCTGCTTTTGAATTTTATTGTTTATTTGCAAAACAAAATGGATTTTCTATTAGGCGTGATCACATTTATAAATCTTGTAAATTTGTGTCAGAAGAGAATCCATCGGGTGTTTATAAGAGGGAATTTGTTTGTCATCGTGGTGGTATTGGTAAACCACGCAAAACTGTTGAAGTGGAAAATCAAAGGAAACGAAAATCTTCAAGATGTGATTGTAGTGCAAAGATGGTAGTTACTAAGAGAAGAATTGGCATTGAGGAAAAATGGGTGGTTAAACATTTCAACAATTCTCACAACCACGAGTTATTGGATGACAAAGAGGTTCAATTTCTTCCTGCTTATCGTAACATTCCAATTGTTGATCAAGATCGCATACTATTATTGTCTAAAGCCGGTTGCCCTGTAAGTCTTATAGCGAGAGTGCTTGAGTTAGAGAAAAGAACAGGCACAGGAAATTTACCATTCTTAGAAAAAGATATTAGAAATTTTATTCAATCATATAGTGGTATTGGTAAAGAAAGTGATGCTTCAGATGTTCTCAGATTGTGCAAAAGTTTGAAAGATCGAGATGAGGCCTTCCAATATGAATTCACAATTGATGGAAGTAACAAATTGGAGCATATTGTTTGGGCATTTGGTGATTCAATTCGTGCATATGAAGCTTTTGGAGATGTTGTAGTTTTTGATACCACATATAGAATAAACCGTTATGAGATGCCTCTTGGAATATGGGTTGGTGTTGATAATCATGGAAATTCAATTTTTTTTGGTTGCGTTCTATTGCGAAATGAGAAGATTTCTTCCTTCGCATGGGCTATAAAGGTAAATTTCTATTTACTCAAAGTTGCTATCACTGTTAAATTTTTTAATTTGAAACTTTATTAAATTATTTTATATTTATGTTACTATTTTCAGAGTTTCCTAGCTTTTGTGAAAGGAAAATATCCAAAAACAATTCTTACCGATCAAGATCCTTCAATTAAAGAAGCCATTGCAATGGAATTGCCAAACACAAAACATGCATTTTGCATATGGCATATTGTCGCAAAGCTGTCAAGTTGGTTTTCTTTTCCACTAGGTTCGAGATATGATGACTTTAAACATGAGTTTCATAAGGTGTATCATTTAGAATGTGCAGATGATTTTGAACGAGAATGGAAAGTAATGGTCTCACAGTTTGGTTTGGGTGTGGATAAGCATATTGACTTGCTCTTTACCCATCGTAAATTTTGGGCCTTAGCTTATTTGAAGGACTTTTTTTTTGCTGGAATGACAACAACAGGACGCTCAGAATCGATAAATTCATATATAAAAAGATTCTTAGATGCCAAAACAAGTTTGACAGATTTTGTAAATCAAGTAAGAACTTACTTGATACATTTTTTTTAATCAATTAGCTTATAATTTAGTCATGATTGTTATATTTTTGTGTAGGTTGGTGTTGCTGTCAAAATTAGAAATCAAGCTGGAGAAGAGGCACGAATGCGTCAAAAGTATCATAATCCTCATATTACAACACATTTTCCTATTGAAGAACATGCCTCGTCTATACTCACACCTTATGCCTTTAAGTTGCTTCAACATGAGATCGAATTATCTGCAAAGTATGCAGCAATTGAAGCTGCCAATGGCTCTTATGTTGTGCAACATCATACCAAAGTTGATGGTGGTCGTATAGTAAGTTTGATAAAAGAAGAAGAGTCAATTCATTGTTCTTGTAAAGAGTTTCAATTTTCAGGAATAATATGTAGACATGCAATTCGAGTGCTAATGTTGAAAAATTATTTTGTTCTTCCATCAAAATATCTTCCTTTTCGATGGAGACGAGAAAGTTCATTGATCCCAAAATCTAGTCATGTAATAAACTGCAATGATGGATCCTCTGCTAAATTTCAGTCTCTAATTCGATGTTTGGAAGTCGAATCATTAAAGACAAGTGAACGAGAACAGGTTGCCACAAGGGAGTTAGAAAATATCATCATAAAGATAAAAGGCATGCCTGAAACTCAAGAACATGTGATTGATTTGGAAGAGGATGTTTCCAACAATGCTGACTGTGACGTTGAAAATCCTGTTGTTTCAAAAACAAAAGGTCGGCCAAAAGGATCAAGACCAAAAGGAGGGGTTGAAGCTGCCAAGAAGCCTCGTCGTTGTCATGTTCCAGATTGTGGTGGAACTAATCACGACTCACGAAACTGTCCAAACAAAAAGAGAAAAATGGAAGTGTTGCCTTCTCAATCTCCTAATAAGTAAGTTTTAATTGGTGTGTCTTGCTCTACTCATGAGTAATATATTGAATTGTAATATTAACTGTATTTTTATGGTGCTTTGATAGGATCATGAAGGGTTGGAAGTAG

Protein sequence

>MS.gene62016.t1

MISEVSNDASDWPLPQVTNIDGWVPFEGQIFEDDEYVNSLTFQELQHEPLPQVNNIDEGIPFEGKIFESDNAAFEFYCLFAKQNGFSIRRDHIYKSCKFVSEENPSGVYKREFVCHRGGIGKPRKTVEVENQRKRKSSRCDCSAKMVVTKRRIGIEEKWVVKHFNNSHNHELLDDKEVQFLPAYRNIPIVDQDRILLLSKAGCPVSLIARVLELEKRTGTGNLPFLEKDIRNFIQSYSGIGKESDASDVLRLCKSLKDRDEAFQYEFTIDGSNKLEHIVWAFGDSIRAYEAFGDVVVFDTTYRINRYEMPLGIWVGVDNHGNSIFFGCVLLRNEKISSFAWAIKSFLAFVKGKYPKTILTDQDPSIKEAIAMELPNTKHAFCIWHIVAKLSSWFSFPLGSRYDDFKHEFHKVYHLECADDFEREWKVMVSQFGLGVDKHIDLLFTHRKFWALAYLKDFFFAGMTTTGRSESINSYIKRFLDAKTSLTDFVNQVGVAVKIRNQAGEEARMRQKYHNPHITTHFPIEEHASSILTPYAFKLLQHEIELSAKYAAIEAANGSYVVQHHTKVDGGRISLIRCLEVESLKTSEREQVATRELENIIIKIKGMPETQEHVIDLEEDVSNNADCDVENPVVSKTKGRPKGSRPKGGVEAAKKPRRCHVPDCGGTNHDSRNCPNKKRKMEVLPSQSPNKIMKGWK