AlfalfaGEDB | MS.gene62080

M. sativa cultivar XinJiangDaYe / MS.gene62080

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62080.t1	XP_003610423.1	93.2	132	9	0	1	132	45	176	3.60E-63	250.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene62080.t1	G7JJ63	93.2	132	9	0	1	132	45	176	2.6e-63	250.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049396	MS.gene62080	0.817776	2.77E-52	-1.69E-46
MS.gene050697	MS.gene62080	0.830157	3.44E-55	-1.69E-46
MS.gene05494	MS.gene62080	0.818835	1.59E-52	-1.69E-46
MS.gene056387	MS.gene62080	0.842796	2.08E-58	-1.69E-46
MS.gene06097	MS.gene62080	0.804583	2.01E-49	-1.69E-46
MS.gene061218	MS.gene62080	0.970493	1.06E-131	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 45 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCGTGATTTGAGAC+GGG	0.530895	8.2:-2422035	MS.gene62080:CDS
ACGATTCCACCGATTCAACT+CGG	0.637845	8.2:+2422170	None:intergenic
ACGCTTGCGACAGGCCGCCG+TGG	0.563075	8.2:+2422305	None:intergenic
ATCAGCACCGGTGAACGTGC+CGG	0.584228	8.2:-2422209	MS.gene62080:CDS
ATGAGTATTTGGCGCGTGGC+CGG	0.490622	8.2:-2422102	MS.gene62080:CDS
ATGCTGTTTGGAACCAAACC+GGG	0.500659	8.2:-2422006	MS.gene62080:CDS
ATGTTGCAACGTTCCGGTAC+TGG	0.447319	8.2:+2422230	None:intergenic
CAAACCGGGTTCGATGGTTG+AGG	0.576026	8.2:-2421992	None:intergenic
CAATTTCTCTCCCGGCGATT+GGG	0.307565	8.2:-2422356	MS.gene62080:CDS
CACAACGTCAATTTCTCTCC+CGG	0.549711	8.2:-2422364	MS.gene62080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAAGGCCGTGATTTGAGA+CGG	-	chr8.2:2422330-2422349	MS.gene62080:CDS	40.0%
CACAACGTCAATTTCTCTCC+CGG	-	chr8.2:2422002-2422021	MS.gene62080:CDS	45.0%
GGTGGAATCGTTGCATGATA+TGG	-	chr8.2:2422208-2422227	MS.gene62080:CDS	45.0%
ATGTTGCAACGTTCCGGTAC+TGG	+	chr8.2:2422139-2422158	None:intergenic	50.0%
CAATTTCTCTCCCGGCGATT+GGG	-	chr8.2:2422010-2422029	MS.gene62080:CDS	50.0%
CACGAACCCGTCTCAAATCA+CGG	+	chr8.2:2422340-2422359	None:intergenic	50.0%
CATTCACGTCGTCACAACCA+CGG	-	chr8.2:2422044-2422063	MS.gene62080:CDS	50.0%
CCGGAAAATGGCGGCAAATT+CGG	-	chr8.2:2422283-2422302	MS.gene62080:CDS	50.0%
CGGGAGAGAAATTGACGTTG+TGG	+	chr8.2:2422004-2422023	None:intergenic	50.0%
GAACGTTGCAACATCAGCAC+CGG	-	chr8.2:2422145-2422164	MS.gene62080:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	2421994	2422394	2421994	ID=MS.gene62080
chr8.2	mRNA	2421994	2422394	2421994	ID=MS.gene62080.t1;Parent=MS.gene62080
chr8.2	exon	2421994	2422394	2421994	ID=MS.gene62080.t1.exon1;Parent=MS.gene62080.t1
chr8.2	CDS	2421994	2422394	2421994	ID=cds.MS.gene62080.t1;Parent=MS.gene62080.t1

Gene Sequence

>MS.gene62080

ATCGTGACCACAACGTCAATTTCTCTCCCGGCGATTGGGATTCACGCGCACATTCACGTCGTCACAACCACGGCGGCCTGTCGCAAGCGTTTGAGAATCAGGTTAGTGATGTTGCGACTATGTCGTCGAGAATCGTTCACCACCAGTACCGGAACGTTGCAACATCAGCACCGGTGAACGTGCCGGATTGGAGTAAGATACTCCGAGTTGAATCGGTGGAATCGTTGCATGATATGGATGATGATAACGAATCGGAGATGGTTCCGCCGCATGAGTATTTGGCGCGTGGCCGGAAAATGGCGGCAAATTCGGTTTTCGAAGGGGTGGGTCGGACCTTAAAAGGCCGTGATTTGAGACGGGTTCGTGATGCTGTTTGGAACCAAACCGGGTTCGATGGTTGA

Protein sequence

>MS.gene62080.t1

IVTTTSISLPAIGIHAHIHVVTTTAACRKRLRIRLVMLRLCRRESFTTSTGTLQHQHRUTCRIGVRYSELNRWNRCMIWMMITNRRWFRRMSIWRVAGKWRQIRFSKGWVGPUKAVIUDGFVMLFGTKPGSMV