Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62170.t1 | XP_003600765.2 | 97.9 | 235 | 5 | 0 | 1 | 235 | 39 | 273 | 1.90E-115 | 425.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62170.t1 | Q54TS4 | 34.8 | 198 | 118 | 3 | 40 | 231 | 125 | 317 | 3.0e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62170.t1 | G7J9Z2 | 97.9 | 235 | 5 | 0 | 1 | 235 | 39 | 273 | 1.4e-115 | 425.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62170 | MS.gene072464 | PPI |
| MS.gene62170 | MS.gene050864 | PPI |
| MS.gene62170 | MS.gene29330 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62170.t1 | MTR_3g069150 | 97.872 | 235 | 5 | 0 | 1 | 235 | 39 | 273 | 1.65e-168 | 465 |
| MS.gene62170.t1 | MTR_3g069170 | 97.525 | 202 | 5 | 0 | 1 | 202 | 39 | 240 | 8.17e-145 | 404 |
| MS.gene62170.t1 | MTR_5g081040 | 78.298 | 235 | 49 | 2 | 1 | 234 | 39 | 272 | 8.69e-134 | 377 |
| MS.gene62170.t1 | MTR_3g069150 | 97.688 | 173 | 4 | 0 | 1 | 173 | 39 | 211 | 3.62e-125 | 355 |
| MS.gene62170.t1 | MTR_5g081040 | 80.383 | 209 | 40 | 1 | 27 | 234 | 4 | 212 | 6.07e-122 | 345 |
| MS.gene62170.t1 | MTR_7g113620 | 39.535 | 215 | 122 | 3 | 1 | 209 | 38 | 250 | 1.63e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62170.t1 | AT2G39805 | 63.983 | 236 | 79 | 2 | 1 | 234 | 43 | 274 | 3.47e-105 | 305 |
| MS.gene62170.t1 | AT2G39805 | 63.713 | 237 | 79 | 3 | 1 | 234 | 43 | 275 | 2.69e-103 | 300 |
| MS.gene62170.t1 | AT5G27490 | 39.095 | 243 | 137 | 4 | 1 | 234 | 38 | 278 | 1.11e-52 | 172 |
| MS.gene62170.t1 | AT3G05280 | 38.158 | 228 | 131 | 4 | 1 | 220 | 37 | 262 | 8.58e-46 | 154 |
Find 51 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCCATGCAGATGCTTT+TGG | 0.236864 | 3.2:-63055753 | MS.gene62170:intron |
| ATTACAGGTATGGGCTTATA+TGG | 0.245624 | 3.2:-63054707 | MS.gene62170:intron |
| ATGCTAACCTTATACGGTTT+TGG | 0.272157 | 3.2:-63054491 | MS.gene62170:CDS |
| CGGAGGCGGAGGCGGACAAC+AGG | 0.291792 | 3.2:-63056396 | MS.gene62170:CDS |
| GTTCAAATGCTAACCTTATA+CGG | 0.310617 | 3.2:-63054497 | MS.gene62170:CDS |
| ACAAGCACCAAAACCGTATA+AGG | 0.349509 | 3.2:+63054484 | None:intergenic |
| TACAGAAGACAAGATGAAAA+TGG | 0.358922 | 3.2:+63054446 | None:intergenic |
| TCCGCCTCCGCCTCCACTGT+TGG | 0.372021 | 3.2:+63056409 | None:intergenic |
| ACGGCTGCATGGTCTATATA+TGG | 0.373238 | 3.2:-63054570 | MS.gene62170:CDS |
| AGTGGAGGCGGAGGCGGAGG+CGG | 0.373465 | 3.2:-63056404 | MS.gene62170:CDS |
| CCGCCTCCGCCTCCACTGTT+GGG | 0.392180 | 3.2:+63056410 | None:intergenic |
| GGCAACAGCCAGCTAATAAC+TGG | 0.407158 | 3.2:-63055731 | MS.gene62170:CDS |
| CCCAACAGTGGAGGCGGAGG+CGG | 0.414258 | 3.2:-63056410 | MS.gene62170:CDS |
| CAAACTCTTGGAACTCCAAC+TGG | 0.420287 | 3.2:-63056368 | MS.gene62170:intron |
| CGTTGCAAAATTTCCAAGTA+AGG | 0.421093 | 3.2:+63054656 | None:intergenic |
| AACAGTGGAGGCGGAGGCGG+AGG | 0.422692 | 3.2:-63056407 | MS.gene62170:CDS |
| TTATTCCAGTTGAGATTCTT+CGG | 0.425394 | 3.2:-63054247 | MS.gene62170:CDS |
| TGGATCATAATAATCCTTAC+CGG | 0.450308 | 3.2:-63054224 | MS.gene62170:CDS |
| TGATGTTAGCTATGTGAATA+CGG | 0.450659 | 3.2:-63054589 | MS.gene62170:CDS |
| ATCCACCGAAGAATCTCAAC+TGG | 0.453879 | 3.2:+63054242 | None:intergenic |
| TATATATGGCTATGTGATAG+TGG | 0.458907 | 3.2:-63054556 | MS.gene62170:CDS |
| AAATGCATAACTCACAGATC+AGG | 0.466971 | 3.2:+63055582 | None:intergenic |
| GTCATCACCGACTGGATTCA+AGG | 0.474193 | 3.2:+63055629 | None:intergenic |
| AATCCTTGCCAGTTATTAGC+TGG | 0.478284 | 3.2:+63055723 | None:intergenic |
| CTCCGCCTCCACTGTTGGGA+GGG | 0.497926 | 3.2:+63056414 | None:intergenic |
| CAACAGGGATATCAAACTCT+TGG | 0.506858 | 3.2:-63056380 | MS.gene62170:CDS |
| TTCCCTCCCAACAGTGGAGG+CGG | 0.507299 | 3.2:-63056416 | MS.gene62170:CDS |
| CCTCCCAACAGTGGAGGCGG+AGG | 0.514348 | 3.2:-63056413 | MS.gene62170:CDS |
| CCTCCGCCTCCACTGTTGGG+AGG | 0.519513 | 3.2:+63056413 | None:intergenic |
| TAGCTGAGGCAGCACCGGTA+AGG | 0.526708 | 3.2:+63054210 | None:intergenic |
| AAAGCTAGCTGAGGCAGCAC+CGG | 0.543010 | 3.2:+63054205 | None:intergenic |
| GCTTTGTTTCTCTGAACCTA+CGG | 0.544632 | 3.2:-63054187 | MS.gene62170:CDS |
| TATATGGATCTCAACAACAT+TGG | 0.547591 | 3.2:-63054691 | MS.gene62170:CDS |
| GGAGGCGGAGGCGGACAACA+GGG | 0.549463 | 3.2:-63056395 | MS.gene62170:CDS |
| TATAGGAAATGATCTTTCAG+TGG | 0.570515 | 3.2:-63054159 | MS.gene62170:CDS |
| AATGCATAACTCACAGATCA+GGG | 0.570733 | 3.2:+63055583 | None:intergenic |
| AAGACAAGATGAAAATGGTG+AGG | 0.598153 | 3.2:+63054451 | None:intergenic |
| CAGCCAGCTAATAACTGGCA+AGG | 0.605206 | 3.2:-63055726 | MS.gene62170:CDS |
| AGACAAGATGAAAATGGTGA+GGG | 0.610681 | 3.2:+63054452 | None:intergenic |
| GCTATGTGAATACGGCTGCA+TGG | 0.612811 | 3.2:-63054581 | MS.gene62170:CDS |
| CTATGTGATAGTGGTCCCAT+TGG | 0.614198 | 3.2:-63054547 | MS.gene62170:CDS |
| ATACAGATAACAGAACATCA+TGG | 0.618085 | 3.2:-63054617 | MS.gene62170:CDS |
| ATAAGTTCCTTGAATCCAGT+CGG | 0.621033 | 3.2:-63055636 | MS.gene62170:CDS |
| CATTTGAACCCATATACTGA+AGG | 0.626704 | 3.2:+63054511 | None:intergenic |
| CAGAGAAACAAAGCTAGCTG+AGG | 0.631465 | 3.2:+63054196 | None:intergenic |
| TTCCAGTTGAGATTCTTCGG+TGG | 0.636030 | 3.2:-63054244 | MS.gene62170:CDS |
| GAACTGAACTTTGATGAAGA+CGG | 0.639176 | 3.2:+63054100 | None:intergenic |
| ACATTCCCTCCCAACAGTGG+AGG | 0.642219 | 3.2:-63056419 | MS.gene62170:CDS |
| CAAACATTCCCTCCCAACAG+TGG | 0.649727 | 3.2:-63056422 | MS.gene62170:CDS |
| CATTTCCTATAAAAGACCGT+AGG | 0.655329 | 3.2:+63054171 | None:intergenic |
| GTACACACAGTATTTCAACG+TGG | 0.852750 | 3.2:-63055685 | MS.gene62170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTTTGTTTAATTTT+AGG | - | chr3.2:63054449-63054468 | MS.gene62170:CDS | 10.0% |
| !! | AAAAATATTACTTCTCTAAT+TGG | - | chr3.2:63055166-63055185 | MS.gene62170:intron | 15.0% |
| !! | TATATACTATGAATCTATTA+TGG | - | chr3.2:63055572-63055591 | MS.gene62170:intron | 15.0% |
| !! | TTATTAGATAAAAACATGAA+AGG | + | chr3.2:63056217-63056236 | None:intergenic | 15.0% |
| !!! | ATCAGAAATTTATACATTTT+GGG | + | chr3.2:63055338-63055357 | None:intergenic | 15.0% |
| !!! | TATCAGAAATTTATACATTT+TGG | + | chr3.2:63055339-63055358 | None:intergenic | 15.0% |
| !!! | TTATTATGCTTTTTTATTAC+TGG | - | chr3.2:63054275-63054294 | MS.gene62170:intron | 15.0% |
| !! | AAAATCAAATAAAATCTTGG+AGG | + | chr3.2:63055663-63055682 | None:intergenic | 20.0% |
| !! | AAACCCATTTATATACTTTA+TGG | - | chr3.2:63054308-63054327 | MS.gene62170:intron | 20.0% |
| !! | AAGCCATAAAGTATATAAAT+GGG | + | chr3.2:63054314-63054333 | None:intergenic | 20.0% |
| !! | ACACATAATATGTTTAGTTA+TGG | - | chr3.2:63054528-63054547 | MS.gene62170:CDS | 20.0% |
| !! | ACCAGATATATTTATATAAC+AGG | + | chr3.2:63055600-63055619 | None:intergenic | 20.0% |
| !! | ACTATAAATATGCCAATTAA+TGG | - | chr3.2:63055270-63055289 | MS.gene62170:intron | 20.0% |
| !! | ATGATTAATATAGCATAGAT+TGG | + | chr3.2:63054725-63054744 | None:intergenic | 20.0% |
| !! | CCAGATATATTTATATAACA+GGG | + | chr3.2:63055599-63055618 | None:intergenic | 20.0% |
| !! | CTATAAATATGCCAATTAAT+GGG | - | chr3.2:63055271-63055290 | MS.gene62170:intron | 20.0% |
| !! | GACAAAATCAAATAAAATCT+TGG | + | chr3.2:63055666-63055685 | None:intergenic | 20.0% |
| !! | TTTAATTCTTTGCCATATAA+TGG | - | chr3.2:63055373-63055392 | MS.gene62170:intron | 20.0% |
| !!! | TACATTTTCGATAACTAAAA+TGG | - | chr3.2:63054971-63054990 | MS.gene62170:intron | 20.0% |
| ! | AAGTCTAAACCAATTGAATA+TGG | - | chr3.2:63054501-63054520 | MS.gene62170:CDS | 25.0% |
| ! | ATACTTTATTACTACAGTCT+TGG | + | chr3.2:63055747-63055766 | None:intergenic | 25.0% |
| ! | ATAGTAATTTAACCCACAAA+TGG | + | chr3.2:63055555-63055574 | None:intergenic | 25.0% |
| ! | ATTACAACTATTCTCTAATC+AGG | + | chr3.2:63054687-63054706 | None:intergenic | 25.0% |
| ! | CCCTGTTATATAAATATATC+TGG | - | chr3.2:63055596-63055615 | MS.gene62170:intron | 25.0% |
| ! | GAAGCCATAAAGTATATAAA+TGG | + | chr3.2:63054315-63054334 | None:intergenic | 25.0% |
| ! | TGATAGATGATTAATACTGA+TGG | - | chr3.2:63054649-63054668 | MS.gene62170:CDS | 25.0% |
| !! | AAATTTATACATTTTGGGCT+AGG | + | chr3.2:63055333-63055352 | None:intergenic | 25.0% |
| !! | AGGAGAAAAACAAAACATTT+TGG | - | chr3.2:63054388-63054407 | MS.gene62170:intron | 25.0% |
| !! | ATTTTTCTTGCAAATAGCTT+TGG | - | chr3.2:63056393-63056412 | MS.gene62170:CDS | 25.0% |
| !! | TATCTGTATGTTTTTCCATA+AGG | + | chr3.2:63055888-63055907 | None:intergenic | 25.0% |
| !! | TGATACTTTTCCATTATTAC+AGG | - | chr3.2:63055794-63055813 | MS.gene62170:intron | 25.0% |
| !! | TTAATTGCTTTGTTCCAATA+TGG | + | chr3.2:63055454-63055473 | None:intergenic | 25.0% |
| !! | TTTAGCTACTGACAATTTTA+AGG | + | chr3.2:63055487-63055506 | None:intergenic | 25.0% |
| !! | TTTTCCATTATTACAGGTAT+GGG | - | chr3.2:63055800-63055819 | MS.gene62170:intron | 25.0% |
| !!! | AGAGAAGTAATATTTTTGCA+TGG | + | chr3.2:63055163-63055182 | None:intergenic | 25.0% |
| !!! | GAGAAGTAATATTTTTGCAT+GGG | + | chr3.2:63055162-63055181 | None:intergenic | 25.0% |
| !!! | TACTTTTTCCTTCAGTATAT+GGG | - | chr3.2:63055997-63056016 | MS.gene62170:intron | 25.0% |
| !!! | TCAAACTTAATTTGTGACTA+TGG | - | chr3.2:63054183-63054202 | MS.gene62170:CDS | 25.0% |
| !!! | TCTCTATTTTTTCCATTTGT+GGG | - | chr3.2:63055540-63055559 | MS.gene62170:intron | 25.0% |
| !!! | TGTTGTTTTATGCAAACTTA+GGG | - | chr3.2:63055238-63055257 | MS.gene62170:intron | 25.0% |
| !!! | TGTTTAGTTATGGCTTTATT+CGG | - | chr3.2:63054538-63054557 | MS.gene62170:CDS | 25.0% |
| !!! | TTCTCTATTTTTTCCATTTG+TGG | - | chr3.2:63055539-63055558 | MS.gene62170:intron | 25.0% |
| !!! | TTGTTGTTTTATGCAAACTT+AGG | - | chr3.2:63055237-63055256 | MS.gene62170:intron | 25.0% |
| !!! | TTTGTTTCTGGATTTTGAAT+GGG | - | chr3.2:63054596-63054615 | MS.gene62170:CDS | 25.0% |
| AAAAAGACTCCGAACAAAAA+AGG | + | chr3.2:63054434-63054453 | None:intergenic | 30.0% | |
| AAACTGATCTTGATTTCATG+TGG | - | chr3.2:63054996-63055015 | MS.gene62170:intron | 30.0% | |
| AACAGAAGGCAATAAGAAAA+AGG | + | chr3.2:63055118-63055137 | None:intergenic | 30.0% | |
| AATTCTTTGCCATATAATGG+AGG | - | chr3.2:63055376-63055395 | MS.gene62170:intron | 30.0% | |
| ACAGAAGGCAATAAGAAAAA+GGG | + | chr3.2:63055117-63055136 | None:intergenic | 30.0% | |
| ATACAGATAACAGAACATCA+TGG | - | chr3.2:63055899-63055918 | MS.gene62170:intron | 30.0% | |
| ATATATCTGCCTCCATTATA+TGG | + | chr3.2:63055388-63055407 | None:intergenic | 30.0% | |
| ATATATTGATCCAGCCATAT+TGG | - | chr3.2:63055437-63055456 | MS.gene62170:intron | 30.0% | |
| CAAGAAAAATGCAGCAATTA+TGG | + | chr3.2:63056383-63056402 | None:intergenic | 30.0% | |
| CTGTCACAATAACATTTATG+GGG | - | chr3.2:63055052-63055071 | MS.gene62170:intron | 30.0% | |
| GCTGTCACAATAACATTTAT+GGG | - | chr3.2:63055051-63055070 | MS.gene62170:intron | 30.0% | |
| GTTCAAATGCTAACCTTATA+CGG | - | chr3.2:63056019-63056038 | MS.gene62170:intron | 30.0% | |
| TACAGAAGACAAGATGAAAA+TGG | + | chr3.2:63056073-63056092 | None:intergenic | 30.0% | |
| TATAGGAAATGATCTTTCAG+TGG | - | chr3.2:63056357-63056376 | MS.gene62170:intron | 30.0% | |
| TATATATGGCTATGTGATAG+TGG | - | chr3.2:63055960-63055979 | MS.gene62170:intron | 30.0% | |
| TATATGGATCTCAACAACAT+TGG | - | chr3.2:63055825-63055844 | MS.gene62170:intron | 30.0% | |
| TGATAACATTACTTACCAGT+TGG | + | chr3.2:63054166-63054185 | None:intergenic | 30.0% | |
| TGATGTTAGCTATGTGAATA+CGG | - | chr3.2:63055927-63055946 | MS.gene62170:intron | 30.0% | |
| TGGATCATAATAATCCTTAC+CGG | - | chr3.2:63056292-63056311 | MS.gene62170:intron | 30.0% | |
| TGGCTGGATCAATATATTTA+TGG | + | chr3.2:63055434-63055453 | None:intergenic | 30.0% | |
| TGTGTAACACCATATTCAAT+TGG | + | chr3.2:63054513-63054532 | None:intergenic | 30.0% | |
| TTATTCCAGTTGAGATTCTT+CGG | - | chr3.2:63056269-63056288 | MS.gene62170:intron | 30.0% | |
| TTTGAGAAAATGAAAGTCAG+TGG | - | chr3.2:63055191-63055210 | MS.gene62170:intron | 30.0% | |
| ! | AAATTTTGCAACGTACCTTA+TGG | - | chr3.2:63055870-63055889 | MS.gene62170:intron | 30.0% |
| ! | ACTTTATGGCTTCACATTTT+TGG | - | chr3.2:63054322-63054341 | MS.gene62170:intron | 30.0% |
| ! | ATGTTTTCAGTTGCATACTT+TGG | - | chr3.2:63054625-63054644 | MS.gene62170:CDS | 30.0% |
| ! | CTTTATGGCTTCACATTTTT+GGG | - | chr3.2:63054323-63054342 | MS.gene62170:intron | 30.0% |
| ! | CTTTTCCATTATTACAGGTA+TGG | - | chr3.2:63055799-63055818 | MS.gene62170:intron | 30.0% |
| ! | TTTATGGCTTCACATTTTTG+GGG | - | chr3.2:63054324-63054343 | MS.gene62170:intron | 30.0% |
| ! | TTTTCTTATTGCCTTCTGTT+TGG | - | chr3.2:63055118-63055137 | MS.gene62170:intron | 30.0% |
| !! | ACATTTTGGTAGTTGATGTT+TGG | - | chr3.2:63054402-63054421 | MS.gene62170:intron | 30.0% |
| !! | CATTTTGGTAGTTGATGTTT+GGG | - | chr3.2:63054403-63054422 | MS.gene62170:intron | 30.0% |
| !! | TTATGGCTTTATTCGGTTAA+TGG | - | chr3.2:63054545-63054564 | MS.gene62170:CDS | 30.0% |
| !!! | CTACTTTTTCCTTCAGTATA+TGG | - | chr3.2:63055996-63056015 | MS.gene62170:intron | 30.0% |
| !!! | GTTTGTTTCTGGATTTTGAA+TGG | - | chr3.2:63054595-63054614 | MS.gene62170:CDS | 30.0% |
| AAATGCATAACTCACAGATC+AGG | + | chr3.2:63054937-63054956 | None:intergenic | 35.0% | |
| AAGACAAGATGAAAATGGTG+AGG | + | chr3.2:63056068-63056087 | None:intergenic | 35.0% | |
| AATGCATAACTCACAGATCA+GGG | + | chr3.2:63054936-63054955 | None:intergenic | 35.0% | |
| AATGCGATATGCAAGAGAAT+CGG | - | chr3.2:63055620-63055639 | MS.gene62170:CDS | 35.0% | |
| ACATCATGTCTCCCATTAAT+TGG | + | chr3.2:63055285-63055304 | None:intergenic | 35.0% | |
| AGAAGGCAATAAGAAAAAGG+GGG | + | chr3.2:63055115-63055134 | None:intergenic | 35.0% | |
| AGACAAGATGAAAATGGTGA+GGG | + | chr3.2:63056067-63056086 | None:intergenic | 35.0% | |
| AGGAAAAAGTAGTATGCCAA+TGG | + | chr3.2:63055988-63056007 | None:intergenic | 35.0% | |
| ATAAGTTCCTTGAATCCAGT+CGG | - | chr3.2:63054880-63054899 | MS.gene62170:intron | 35.0% | |
| ATTAATCATTCACGTATCCG+TGG | - | chr3.2:63054736-63054755 | MS.gene62170:intron | 35.0% | |
| ATTACAGGTATGGGCTTATA+TGG | - | chr3.2:63055809-63055828 | MS.gene62170:intron | 35.0% | |
| ATTCGGTTAATGGTTGAATG+TGG | - | chr3.2:63054555-63054574 | MS.gene62170:CDS | 35.0% | |
| CAGAAGGCAATAAGAAAAAG+GGG | + | chr3.2:63055116-63055135 | None:intergenic | 35.0% | |
| CATTTCCTATAAAAGACCGT+AGG | + | chr3.2:63056348-63056367 | None:intergenic | 35.0% | |
| CATTTGAACCCATATACTGA+AGG | + | chr3.2:63056008-63056027 | None:intergenic | 35.0% | |
| CGCTGTCACAATAACATTTA+TGG | - | chr3.2:63055050-63055069 | MS.gene62170:intron | 35.0% | |
| CGTTGCAAAATTTCCAAGTA+AGG | + | chr3.2:63055863-63055882 | None:intergenic | 35.0% | |
| CTTGATTTCATGTGGAAATG+TGG | - | chr3.2:63055004-63055023 | MS.gene62170:intron | 35.0% | |
| GAACTGAACTTTGATGAAGA+CGG | + | chr3.2:63056419-63056438 | None:intergenic | 35.0% | |
| GCTATCTCATTACTTAAGAC+TGG | + | chr3.2:63055693-63055712 | None:intergenic | 35.0% | |
| GGAAAAAGTAGTATGCCAAT+GGG | + | chr3.2:63055987-63056006 | None:intergenic | 35.0% | |
| TAAGCCCATACCTGTAATAA+TGG | + | chr3.2:63055807-63055826 | None:intergenic | 35.0% | |
| TAGATCACTCGTTGTTTAAG+AGG | + | chr3.2:63054481-63054500 | None:intergenic | 35.0% | |
| TTGGCATATTTATAGTCCCT+AGG | + | chr3.2:63055266-63055285 | None:intergenic | 35.0% | |
| ! | ATGCTAACCTTATACGGTTT+TGG | - | chr3.2:63056025-63056044 | MS.gene62170:intron | 35.0% |
| ! | GTTTTTGTACTTGCCTTACT+TGG | - | chr3.2:63055847-63055866 | MS.gene62170:intron | 35.0% |
| !! | ATATCGTATGCCCATTTTTG+GGG | - | chr3.2:63054347-63054366 | MS.gene62170:intron | 35.0% |
| !! | CATTTTACGCAGTTTGTTTC+TGG | - | chr3.2:63054584-63054603 | MS.gene62170:CDS | 35.0% |
| !! | GATATCGTATGCCCATTTTT+GGG | - | chr3.2:63054346-63054365 | MS.gene62170:intron | 35.0% |
| AACATGCCATACACAGAAAG+CGG | + | chr3.2:63056101-63056120 | None:intergenic | 40.0% | |
| AAGAGAGTTACTGAAGAGCT+AGG | - | chr3.2:63055505-63055524 | MS.gene62170:intron | 40.0% | |
| AAGTTTCCGCTTTCTGTGTA+TGG | - | chr3.2:63056092-63056111 | MS.gene62170:intron | 40.0% | |
| AATCCTTGCCAGTTATTAGC+TGG | + | chr3.2:63054796-63054815 | None:intergenic | 40.0% | |
| ACAAGCACCAAAACCGTATA+AGG | + | chr3.2:63056035-63056054 | None:intergenic | 40.0% | |
| ATAACCCTCTCCCCAAAAAT+GGG | + | chr3.2:63054360-63054379 | None:intergenic | 40.0% | |
| CAACAGGGATATCAAACTCT+TGG | - | chr3.2:63054136-63054155 | MS.gene62170:CDS | 40.0% | |
| CATGGGTCAACAATGTACAA+TGG | + | chr3.2:63055145-63055164 | None:intergenic | 40.0% | |
| CCAATATGTGCTTGTGCAAA+AGG | + | chr3.2:63056165-63056184 | None:intergenic | 40.0% | |
| GTACACACAGTATTTCAACG+TGG | - | chr3.2:63054831-63054850 | MS.gene62170:intron | 40.0% | |
| TACAGTCTTGGACTCTATGT+AGG | + | chr3.2:63055735-63055754 | None:intergenic | 40.0% | |
| TGTACAATGGACCAAACAGA+AGG | + | chr3.2:63055132-63055151 | None:intergenic | 40.0% | |
| ! | CCTTTTGCACAAGCACATAT+TGG | - | chr3.2:63056162-63056181 | MS.gene62170:intron | 40.0% |
| ! | CTGAACCTACGGTCTTTTAT+AGG | - | chr3.2:63056340-63056359 | MS.gene62170:intron | 40.0% |
| ! | GGATATCGTATGCCCATTTT+TGG | - | chr3.2:63054345-63054364 | MS.gene62170:intron | 40.0% |
| ! | TCATCCATGCAGATGCTTTT+GGG | - | chr3.2:63054764-63054783 | MS.gene62170:intron | 40.0% |
| ! | TTCATCCATGCAGATGCTTT+TGG | - | chr3.2:63054763-63054782 | MS.gene62170:intron | 40.0% |
| ! | TTGCTTTGTTCCAATATGGC+TGG | + | chr3.2:63055450-63055469 | None:intergenic | 40.0% |
| !! | GCTTTGTTTCTCTGAACCTA+CGG | - | chr3.2:63056329-63056348 | MS.gene62170:intron | 40.0% |
| !!! | TATACGGTTTTGGTGCTTGT+GGG | - | chr3.2:63056035-63056054 | MS.gene62170:intron | 40.0% |
| !!! | TTATACGGTTTTGGTGCTTG+TGG | - | chr3.2:63056034-63056053 | MS.gene62170:intron | 40.0% |
| ACGGCTGCATGGTCTATATA+TGG | - | chr3.2:63055946-63055965 | MS.gene62170:intron | 45.0% | |
| AGGCAATAAGAAAAAGGGGG+TGG | + | chr3.2:63055112-63055131 | None:intergenic | 45.0% | |
| ATCCACCGAAGAATCTCAAC+TGG | + | chr3.2:63056277-63056296 | None:intergenic | 45.0% | |
| CAAACTCTTGGAACTCCAAC+TGG | - | chr3.2:63054148-63054167 | MS.gene62170:CDS | 45.0% | |
| CAGAGAAACAAAGCTAGCTG+AGG | + | chr3.2:63056323-63056342 | None:intergenic | 45.0% | |
| CATAACCCTCTCCCCAAAAA+TGG | + | chr3.2:63054361-63054380 | None:intergenic | 45.0% | |
| CTGCATGGATGAATAAGCCA+CGG | + | chr3.2:63054756-63054775 | None:intergenic | 45.0% | |
| GCAAAAAAGTCATCACCGAC+TGG | + | chr3.2:63054898-63054917 | None:intergenic | 45.0% | |
| GTGGAAGTGGAAGAAGCAAA+AGG | + | chr3.2:63055093-63055112 | None:intergenic | 45.0% | |
| TAAGAAAAAGGGGGTGGAAG+TGG | + | chr3.2:63055106-63055125 | None:intergenic | 45.0% | |
| TCATGTGGAAATGTGGTGCT+TGG | - | chr3.2:63055011-63055030 | MS.gene62170:intron | 45.0% | |
| TTCCAGTTGAGATTCTTCGG+TGG | - | chr3.2:63056272-63056291 | MS.gene62170:intron | 45.0% | |
| ! | ATGCAAACTTAGGGTGCCTA+GGG | - | chr3.2:63055247-63055266 | MS.gene62170:intron | 45.0% |
| ! | TATGCAAACTTAGGGTGCCT+AGG | - | chr3.2:63055246-63055265 | MS.gene62170:intron | 45.0% |
| !! | CTATGTGATAGTGGTCCCAT+TGG | - | chr3.2:63055969-63055988 | MS.gene62170:intron | 45.0% |
| !! | TATGCCCATTTTTGGGGAGA+GGG | - | chr3.2:63054353-63054372 | MS.gene62170:intron | 45.0% |
| !!! | ATACGGTTTTGGTGCTTGTG+GGG | - | chr3.2:63056036-63056055 | MS.gene62170:intron | 45.0% |
| !!! | TGGGCAGAGCCTTTTTTGTT+CGG | - | chr3.2:63054422-63054441 | MS.gene62170:intron | 45.0% |
| CAAACATTCCCTCCCAACAG+TGG | - | chr3.2:63054094-63054113 | MS.gene62170:CDS | 50.0% | |
| CAGCCAGCTAATAACTGGCA+AGG | - | chr3.2:63054790-63054809 | MS.gene62170:intron | 50.0% | |
| GCTATGTGAATACGGCTGCA+TGG | - | chr3.2:63055935-63055954 | MS.gene62170:intron | 50.0% | |
| GGAGAGGGTTATGACTTACG+AGG | - | chr3.2:63054368-63054387 | MS.gene62170:intron | 50.0% | |
| GGCAACAGCCAGCTAATAAC+TGG | - | chr3.2:63054785-63054804 | MS.gene62170:intron | 50.0% | |
| TGTGGAAATGTGGTGCTTGG+AGG | - | chr3.2:63055014-63055033 | MS.gene62170:intron | 50.0% | |
| ! | GTCATCACCGACTGGATTCA+AGG | + | chr3.2:63054890-63054909 | None:intergenic | 50.0% |
| !! | GTATGCCCATTTTTGGGGAG+AGG | - | chr3.2:63054352-63054371 | MS.gene62170:intron | 50.0% |
| !! | GTTGCCCAAAAGCATCTGCA+TGG | + | chr3.2:63054771-63054790 | None:intergenic | 50.0% |
| !!! | TACGGTTTTGGTGCTTGTGG+GGG | - | chr3.2:63056037-63056056 | MS.gene62170:intron | 50.0% |
| AAAGCTAGCTGAGGCAGCAC+CGG | + | chr3.2:63056314-63056333 | None:intergenic | 55.0% | |
| ACATTCCCTCCCAACAGTGG+AGG | - | chr3.2:63054097-63054116 | MS.gene62170:CDS | 55.0% | |
| TTCCCTCCCAACAGTGGAGG+CGG | - | chr3.2:63054100-63054119 | MS.gene62170:CDS | 60.0% | |
| !! | TAGCTGAGGCAGCACCGGTA+AGG | + | chr3.2:63056309-63056328 | None:intergenic | 60.0% |
| CTCCGCCTCCACTGTTGGGA+GGG | + | chr3.2:63054105-63054124 | None:intergenic | 65.0% | |
| AACAGTGGAGGCGGAGGCGG+AGG | - | chr3.2:63054109-63054128 | MS.gene62170:CDS | 70.0% | |
| CCCAACAGTGGAGGCGGAGG+CGG | - | chr3.2:63054106-63054125 | MS.gene62170:CDS | 70.0% | |
| CCGCCTCCGCCTCCACTGTT+GGG | + | chr3.2:63054109-63054128 | None:intergenic | 70.0% | |
| CCTCCCAACAGTGGAGGCGG+AGG | - | chr3.2:63054103-63054122 | MS.gene62170:CDS | 70.0% | |
| CCTCCGCCTCCACTGTTGGG+AGG | + | chr3.2:63054106-63054125 | None:intergenic | 70.0% | |
| GGAGGCGGAGGCGGACAACA+GGG | - | chr3.2:63054121-63054140 | MS.gene62170:CDS | 70.0% | |
| TCCGCCTCCGCCTCCACTGT+TGG | + | chr3.2:63054110-63054129 | None:intergenic | 70.0% | |
| AGTGGAGGCGGAGGCGGAGG+CGG | - | chr3.2:63054112-63054131 | MS.gene62170:CDS | 75.0% | |
| CGGAGGCGGAGGCGGACAAC+AGG | - | chr3.2:63054120-63054139 | MS.gene62170:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 63054091 | 63056447 | 63054091 | ID=MS.gene62170 |
| chr3.2 | mRNA | 63054091 | 63056447 | 63054091 | ID=MS.gene62170.t1;Parent=MS.gene62170 |
| chr3.2 | exon | 63056369 | 63056447 | 63056369 | ID=MS.gene62170.t1.exon1;Parent=MS.gene62170.t1 |
| chr3.2 | CDS | 63056369 | 63056447 | 63056369 | ID=cds.MS.gene62170.t1;Parent=MS.gene62170.t1 |
| chr3.2 | exon | 63055597 | 63055762 | 63055597 | ID=MS.gene62170.t1.exon2;Parent=MS.gene62170.t1 |
| chr3.2 | CDS | 63055597 | 63055762 | 63055597 | ID=cds.MS.gene62170.t1;Parent=MS.gene62170.t1 |
| chr3.2 | exon | 63054449 | 63054722 | 63054449 | ID=MS.gene62170.t1.exon3;Parent=MS.gene62170.t1 |
| chr3.2 | CDS | 63054449 | 63054722 | 63054449 | ID=cds.MS.gene62170.t1;Parent=MS.gene62170.t1 |
| chr3.2 | exon | 63054091 | 63054279 | 63054091 | ID=MS.gene62170.t1.exon4;Parent=MS.gene62170.t1 |
| chr3.2 | CDS | 63054091 | 63054279 | 63054091 | ID=cds.MS.gene62170.t1;Parent=MS.gene62170.t1 |
| Gene Sequence |
| Protein sequence |
