Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62235.t1 | XP_013460652.1 | 95.8 | 215 | 8 | 1 | 1 | 214 | 1 | 215 | 1.10E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62235.t1 | Q6NLC8 | 48.1 | 214 | 95 | 5 | 1 | 203 | 1 | 209 | 5.8e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62235.t1 | A0A072UZ14 | 95.8 | 215 | 8 | 1 | 1 | 214 | 1 | 215 | 8.2e-107 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62235 | MS.gene006970 | PPI |
| MS.gene62235 | MS.gene62991 | PPI |
| MS.gene62235 | MS.gene59144 | PPI |
| MS.gene62235 | MS.gene83133 | PPI |
| MS.gene62235 | MS.gene026608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62235.t1 | MTR_3g067730 | 94.931 | 217 | 10 | 1 | 1 | 216 | 1 | 217 | 1.10e-145 | 404 |
| MS.gene62235.t1 | MTR_5g079610 | 63.964 | 222 | 60 | 7 | 1 | 215 | 1 | 209 | 2.05e-82 | 244 |
| MS.gene62235.t1 | MTR_1g030740 | 47.111 | 225 | 96 | 6 | 1 | 216 | 1 | 211 | 1.21e-54 | 174 |
| MS.gene62235.t1 | MTR_4g085100 | 45.662 | 219 | 107 | 5 | 1 | 216 | 1 | 210 | 9.70e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62235.t1 | AT5G37840 | 48.815 | 211 | 92 | 8 | 1 | 203 | 1 | 203 | 5.52e-56 | 177 |
| MS.gene62235.t1 | AT1G66480 | 53.039 | 181 | 69 | 6 | 1 | 171 | 1 | 175 | 1.58e-54 | 174 |
| MS.gene62235.t1 | AT2G01340 | 51.705 | 176 | 70 | 7 | 1 | 174 | 1 | 163 | 9.89e-48 | 156 |
| MS.gene62235.t1 | AT1G71015 | 48.538 | 171 | 78 | 5 | 1 | 171 | 1 | 161 | 1.88e-40 | 137 |
| MS.gene62235.t1 | AT1G71015 | 48.538 | 171 | 78 | 5 | 1 | 171 | 1 | 161 | 1.88e-40 | 137 |
Find 63 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCCTGGTCATGCTCTTT+TGG | 0.172137 | 3.2:-62163722 | MS.gene62235:CDS |
| GAAGATTGTAAGTTTGTATA+TGG | 0.218805 | 3.2:-62163338 | MS.gene62235:CDS |
| TCACAAGCAGTGAAGCATTT+TGG | 0.240768 | 3.2:-62163697 | MS.gene62235:CDS |
| GGCTAAGAAAATCTATTTCT+TGG | 0.251761 | 3.2:-62163635 | MS.gene62235:CDS |
| GGGCCCATCATCACCTAAAT+TGG | 0.255242 | 3.2:+62163462 | None:intergenic |
| TGAATTTCTCCTTCTTCCAC+TGG | 0.323110 | 3.2:+62161914 | None:intergenic |
| CCACTTGATCGCACCCTTCT+CGG | 0.326881 | 3.2:+62163580 | None:intergenic |
| AATGGTTGAGACTGAACTTT+TGG | 0.338433 | 3.2:+62163604 | None:intergenic |
| CTCCGTTTCGGATCTTCCTT+CGG | 0.362224 | 3.2:-62163494 | MS.gene62235:CDS |
| ACTACATCGTTTGCTTTAGC+TGG | 0.387675 | 3.2:+62163751 | None:intergenic |
| GCAAAGGTAATGAAAATAGA+TGG | 0.392442 | 3.2:-62163796 | MS.gene62235:CDS |
| AAGATTGTAAGTTTGTATAT+GGG | 0.412790 | 3.2:-62163337 | MS.gene62235:CDS |
| GGACCCATCACGAACTAAAC+CGG | 0.414228 | 3.2:+62163441 | None:intergenic |
| TCGGTGAAGCGGTCCAATTT+AGG | 0.419968 | 3.2:-62163475 | MS.gene62235:CDS |
| GCTATCAAAACGCTCCGTTT+CGG | 0.424352 | 3.2:-62163506 | MS.gene62235:CDS |
| CGGTCCAATTTAGGTGATGA+TGG | 0.440951 | 3.2:-62163466 | MS.gene62235:CDS |
| GGCTCAGTTGGATAGGTTGA+TGG | 0.448296 | 3.2:-62163392 | MS.gene62235:CDS |
| TCGCGATGGAGCCGAGGTGG+CGG | 0.453581 | 3.2:-62163362 | MS.gene62235:CDS |
| GGGAATAATGCTTCCGTGAA+GGG | 0.459311 | 3.2:-62163316 | MS.gene62235:CDS |
| TAGTTCGTGATGGGTCCACT+AGG | 0.462635 | 3.2:-62163435 | MS.gene62235:CDS |
| AACCTATCCAACTGAGCCTT+AGG | 0.477024 | 3.2:+62163397 | None:intergenic |
| GATTCCACCACCACCCTTCA+CGG | 0.479023 | 3.2:+62163303 | None:intergenic |
| AGAGATGGGAAACGTTATGA+TGG | 0.479796 | 3.2:-62163833 | None:intergenic |
| GGCCCGGTTTAGTTCGTGAT+GGG | 0.493588 | 3.2:-62163444 | MS.gene62235:CDS |
| GAGGATTCCTAAGGCTCAGT+TGG | 0.502372 | 3.2:-62163404 | MS.gene62235:CDS |
| GAATTTCTCCTTCTTCCACT+GGG | 0.507687 | 3.2:+62161915 | None:intergenic |
| AGTTTCAGCCCAGTGGAAGA+AGG | 0.510825 | 3.2:-62161923 | MS.gene62235:CDS |
| AATTTAGGTGATGATGGGCC+CGG | 0.513893 | 3.2:-62163460 | MS.gene62235:CDS |
| GATCGCACCCTTCTCGGCAA+TGG | 0.516224 | 3.2:+62163586 | None:intergenic |
| GGGCCCGGTTTAGTTCGTGA+TGG | 0.520609 | 3.2:-62163445 | MS.gene62235:CDS |
| AGTCTCAACCATTGCCGAGA+AGG | 0.535358 | 3.2:-62163594 | MS.gene62235:CDS |
| GTCTCAACCATTGCCGAGAA+GGG | 0.535992 | 3.2:-62163593 | MS.gene62235:CDS |
| CGGATCTTCCTTCGGTGAAG+CGG | 0.542039 | 3.2:-62163486 | MS.gene62235:CDS |
| CCGAGAAGGGTGCGATCAAG+TGG | 0.545387 | 3.2:-62163580 | MS.gene62235:CDS |
| GGTGGTGGTGGAATCAATGA+AGG | 0.549542 | 3.2:-62163295 | MS.gene62235:CDS |
| AAATAGAGGTTCACAAGCAA+AGG | 0.549838 | 3.2:-62163270 | MS.gene62235:CDS |
| TTCCTAAGGCTCAGTTGGAT+AGG | 0.549884 | 3.2:-62163399 | MS.gene62235:CDS |
| AATAGATGGAGAAACCTTCA+AGG | 0.552725 | 3.2:-62163782 | MS.gene62235:CDS |
| GCTTCCGTGAAGGGTGGTGG+TGG | 0.555337 | 3.2:-62163307 | MS.gene62235:CDS |
| GGTGAAAATGAGGATTCCTA+AGG | 0.559792 | 3.2:-62163413 | MS.gene62235:CDS |
| GGTCCAATTTAGGTGATGAT+GGG | 0.569664 | 3.2:-62163465 | MS.gene62235:CDS |
| AATGCTTCCGTGAAGGGTGG+TGG | 0.570431 | 3.2:-62163310 | MS.gene62235:CDS |
| CACCGAAGGAAGATCCGAAA+CGG | 0.571959 | 3.2:+62163492 | None:intergenic |
| AGATTGTAAGTTTGTATATG+GGG | 0.573949 | 3.2:-62163336 | MS.gene62235:CDS |
| GGGGAATAATGCTTCCGTGA+AGG | 0.574182 | 3.2:-62163317 | MS.gene62235:CDS |
| GAGATGGGAAACGTTATGAT+GGG | 0.574353 | 3.2:-62163832 | MS.gene62235:CDS |
| GGAGAGTCGCGATGGAGCCG+AGG | 0.592155 | 3.2:-62163368 | MS.gene62235:CDS |
| AGTTCGTGATGGGTCCACTA+GGG | 0.594789 | 3.2:-62163434 | MS.gene62235:CDS |
| AGTTGTTGGTGAGGTTCAAG+TGG | 0.598319 | 3.2:+62163661 | None:intergenic |
| TGAACCTCACCAACAACTCA+AGG | 0.599884 | 3.2:-62163656 | MS.gene62235:CDS |
| TTAGCCTTGAGTTGTTGGTG+AGG | 0.603693 | 3.2:+62163652 | None:intergenic |
| GGTCCACTAGGGTGAAAATG+AGG | 0.603810 | 3.2:-62163423 | MS.gene62235:CDS |
| TTGATGGAGGAGAGTCGCGA+TGG | 0.607880 | 3.2:-62163376 | MS.gene62235:CDS |
| GACCCATCACGAACTAAACC+GGG | 0.611560 | 3.2:+62163442 | None:intergenic |
| AATAATGCTTCCGTGAAGGG+TGG | 0.619421 | 3.2:-62163313 | MS.gene62235:CDS |
| AAATTGGACCGCTTCACCGA+AGG | 0.623623 | 3.2:+62163478 | None:intergenic |
| TACAATCTTCTCCGCCACCT+CGG | 0.636314 | 3.2:+62163351 | None:intergenic |
| ACGTGTGAGTTTCAGCCCAG+TGG | 0.650139 | 3.2:-62161930 | MS.gene62235:CDS |
| GAGTCGCGATGGAGCCGAGG+TGG | 0.651574 | 3.2:-62163365 | MS.gene62235:CDS |
| TCACAAGCAAAGGTCACGAA+GGG | 0.654870 | 3.2:-62163260 | MS.gene62235:intron |
| GAATCCAAAAGAGCATGACC+AGG | 0.657634 | 3.2:+62163718 | None:intergenic |
| TTCACAAGCAAAGGTCACGA+AGG | 0.660941 | 3.2:-62163261 | MS.gene62235:CDS |
| TCAGTTGGATAGGTTGATGG+AGG | 0.664629 | 3.2:-62163389 | MS.gene62235:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATATAAATAAAAAA+AGG | - | chr3.2:62163104-62163123 | MS.gene62235:intron | 0.0% |
| !!! | TTTTATTTATATATAAAAAA+TGG | + | chr3.2:62163102-62163121 | None:intergenic | 0.0% |
| !! | AATGTATATTAAAATATAAG+AGG | - | chr3.2:62162936-62162955 | MS.gene62235:intron | 10.0% |
| !! | ATTTATGTTCTTAATAATAT+AGG | - | chr3.2:62163166-62163185 | MS.gene62235:intron | 10.0% |
| !!! | CTTATATTTTAATATACATT+CGG | + | chr3.2:62162936-62162955 | None:intergenic | 10.0% |
| !! | AATATAATTCGTTATTAACA+AGG | - | chr3.2:62163559-62163578 | MS.gene62235:CDS | 15.0% |
| !! | TTAAAAAAGAAAAGAAAAGA+AGG | + | chr3.2:62162884-62162903 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAACTGCAAAA+TGG | + | chr3.2:62162655-62162674 | None:intergenic | 15.0% |
| !! | AAAATGAACAAAATAACGTA+AGG | + | chr3.2:62162508-62162527 | None:intergenic | 20.0% |
| !! | AAGATTGTAAGTTTGTATAT+GGG | - | chr3.2:62162387-62162406 | MS.gene62235:intron | 20.0% |
| !! | TTACAAGAAAGTTATATCAT+AGG | - | chr3.2:62163652-62163671 | MS.gene62235:CDS | 20.0% |
| !!! | AATATCGATAACCAAAATTT+TGG | - | chr3.2:62163072-62163091 | MS.gene62235:intron | 20.0% |
| !!! | ATGTATCTTTTTTGTTTTTC+AGG | - | chr3.2:62162824-62162843 | MS.gene62235:intron | 20.0% |
| !!! | ATTGCAAATTTTTAACTACT+TGG | - | chr3.2:62163272-62163291 | MS.gene62235:CDS | 20.0% |
| !!! | TGTATCTTTTTTGTTTTTCA+GGG | - | chr3.2:62162825-62162844 | MS.gene62235:intron | 20.0% |
| !!! | TTGCAAATTTTTAACTACTT+GGG | - | chr3.2:62163273-62163292 | MS.gene62235:CDS | 20.0% |
| ! | AAATGAATGAGGTAAGAATA+CGG | + | chr3.2:62163372-62163391 | None:intergenic | 25.0% |
| ! | AATCAATGAAGGAAAAATAG+AGG | - | chr3.2:62162440-62162459 | MS.gene62235:intron | 25.0% |
| ! | AGATTGTAAGTTTGTATATG+GGG | - | chr3.2:62162388-62162407 | MS.gene62235:intron | 25.0% |
| ! | GAAGATTGTAAGTTTGTATA+TGG | - | chr3.2:62162386-62162405 | MS.gene62235:intron | 25.0% |
| ! | TCTTGTTAATCTATCTAACA+TGG | - | chr3.2:62163332-62163351 | MS.gene62235:CDS | 25.0% |
| ! | TTAAAATATAAGAGGACACA+CGG | - | chr3.2:62162944-62162963 | MS.gene62235:intron | 25.0% |
| !! | ATTCTTACCTCATTCATTTT+TGG | - | chr3.2:62163373-62163392 | MS.gene62235:CDS | 25.0% |
| !! | TTATGAAAGAAAGTGTAACT+GGG | - | chr3.2:62163136-62163155 | MS.gene62235:intron | 25.0% |
| !! | TTTTATGAGAATTTGCAAGT+GGG | - | chr3.2:62162603-62162622 | MS.gene62235:intron | 25.0% |
| !! | TTTTTATGAGAATTTGCAAG+TGG | - | chr3.2:62162602-62162621 | MS.gene62235:intron | 25.0% |
| !!! | AAAATGGTTTGCCAAAATTT+TGG | + | chr3.2:62163086-62163105 | None:intergenic | 25.0% |
| !!! | CTGTATTGTATATGTTTTGA+TGG | + | chr3.2:62163400-62163419 | None:intergenic | 25.0% |
| !!! | TACATATTCGAAAGTATTCT+AGG | + | chr3.2:62162809-62162828 | None:intergenic | 25.0% |
| !!! | TTTCATTACCTTTGCTTTTT+TGG | + | chr3.2:62161923-62161942 | None:intergenic | 25.0% |
| AAATGAGATGTACCATGTAT+TGG | - | chr3.2:62162704-62162723 | MS.gene62235:intron | 30.0% | |
| AATGAGATGTACCATGTATT+GGG | - | chr3.2:62162705-62162724 | MS.gene62235:intron | 30.0% | |
| GATGTAGTTAAAAACTATCC+TGG | - | chr3.2:62161988-62162007 | MS.gene62235:intron | 30.0% | |
| GCAAAGGTAATGAAAATAGA+TGG | - | chr3.2:62161928-62161947 | MS.gene62235:CDS | 30.0% | |
| TATTTCTCCAACTTTCTTCT+TGG | + | chr3.2:62163218-62163237 | None:intergenic | 30.0% | |
| TGTTTCAATTTCCATGCAAA+CGG | - | chr3.2:62163721-62163740 | MS.gene62235:CDS | 30.0% | |
| ! | CTTATGAAAGAAAGTGTAAC+TGG | - | chr3.2:62163135-62163154 | MS.gene62235:intron | 30.0% |
| ! | GGCTAAGAAAATCTATTTCT+TGG | - | chr3.2:62162089-62162108 | MS.gene62235:intron | 30.0% |
| ! | TACATGGTACATCTCATTTT+TGG | + | chr3.2:62162703-62162722 | None:intergenic | 30.0% |
| ! | TTTGAGATACTTCATTGAGT+TGG | - | chr3.2:62162782-62162801 | MS.gene62235:intron | 30.0% |
| !! | ACATGGTACATCTCATTTTT+GGG | + | chr3.2:62162702-62162721 | None:intergenic | 30.0% |
| AAATAGAGGTTCACAAGCAA+AGG | - | chr3.2:62162454-62162473 | MS.gene62235:intron | 35.0% | |
| AATAGATGGAGAAACCTTCA+AGG | - | chr3.2:62161942-62161961 | MS.gene62235:intron | 35.0% | |
| GTCATAAGCAACATACAAGA+AGG | + | chr3.2:62163309-62163328 | None:intergenic | 35.0% | |
| GTTTCAATTTCCATGCAAAC+GGG | - | chr3.2:62163722-62163741 | MS.gene62235:CDS | 35.0% | |
| TATCATTCAGCATCATCTTG+TGG | + | chr3.2:62162995-62163014 | None:intergenic | 35.0% | |
| TGATGGTCCAAAAATGAATG+AGG | + | chr3.2:62163383-62163402 | None:intergenic | 35.0% | |
| ! | AATGGTTGAGACTGAACTTT+TGG | + | chr3.2:62162123-62162142 | None:intergenic | 35.0% |
| !! | CTTCTAAAACACCCAATACA+TGG | + | chr3.2:62162719-62162738 | None:intergenic | 35.0% |
| !!! | AGTGAAGCATTTTGGTCTTA+GGG | - | chr3.2:62162035-62162054 | MS.gene62235:intron | 35.0% |
| !!! | TTTTCTTAGCCTTGAGTTGT+TGG | + | chr3.2:62162080-62162099 | None:intergenic | 35.0% |
| ACTACATCGTTTGCTTTAGC+TGG | + | chr3.2:62161976-62161995 | None:intergenic | 40.0% | |
| GAAACGTTGTATGCTTTGTC+TGG | - | chr3.2:62162557-62162576 | MS.gene62235:intron | 40.0% | |
| GAATTTCTCCTTCTTCCACT+GGG | + | chr3.2:62163812-62163831 | None:intergenic | 40.0% | |
| GGGAAGAACCAAAAAAGCAA+AGG | - | chr3.2:62161912-62161931 | MS.gene62235:CDS | 40.0% | |
| GGTCCAATTTAGGTGATGAT+GGG | - | chr3.2:62162259-62162278 | MS.gene62235:intron | 40.0% | |
| GGTGAAAATGAGGATTCCTA+AGG | - | chr3.2:62162311-62162330 | MS.gene62235:intron | 40.0% | |
| TGAATTTCTCCTTCTTCCAC+TGG | + | chr3.2:62163813-62163832 | None:intergenic | 40.0% | |
| TTCACATTAACCCGTTTGCA+TGG | + | chr3.2:62163735-62163754 | None:intergenic | 40.0% | |
| TTCTTGGCATCAGCAAGATA+AGG | + | chr3.2:62163202-62163221 | None:intergenic | 40.0% | |
| ! | AATCCTCATTTTCACCCTAG+TGG | + | chr3.2:62162307-62162326 | None:intergenic | 40.0% |
| ! | AGCTGGAGTTTTTACCTTGA+AGG | + | chr3.2:62161959-62161978 | None:intergenic | 40.0% |
| ! | GTAGCACTCATTTTACGTGA+AGG | + | chr3.2:62162177-62162196 | None:intergenic | 40.0% |
| !! | CAGTGAAGCATTTTGGTCTT+AGG | - | chr3.2:62162034-62162053 | MS.gene62235:intron | 40.0% |
| !! | TCACAAGCAGTGAAGCATTT+TGG | - | chr3.2:62162027-62162046 | MS.gene62235:intron | 40.0% |
| AACCTATCCAACTGAGCCTT+AGG | + | chr3.2:62162330-62162349 | None:intergenic | 45.0% | |
| AATAATGCTTCCGTGAAGGG+TGG | - | chr3.2:62162411-62162430 | MS.gene62235:intron | 45.0% | |
| CGGTCCAATTTAGGTGATGA+TGG | - | chr3.2:62162258-62162277 | MS.gene62235:intron | 45.0% | |
| CTGGATGTTGCATGTGATGT+GGG | - | chr3.2:62162576-62162595 | MS.gene62235:intron | 45.0% | |
| GCTATCAAAACGCTCCGTTT+CGG | - | chr3.2:62162218-62162237 | MS.gene62235:intron | 45.0% | |
| GCTGATGCCAAGAAGAAAGT+TGG | - | chr3.2:62163208-62163227 | MS.gene62235:intron | 45.0% | |
| GGGAATAATGCTTCCGTGAA+GGG | - | chr3.2:62162408-62162427 | MS.gene62235:intron | 45.0% | |
| TCACAAGCAAAGGTCACGAA+GGG | - | chr3.2:62162464-62162483 | MS.gene62235:intron | 45.0% | |
| TCTGGATGTTGCATGTGATG+TGG | - | chr3.2:62162575-62162594 | MS.gene62235:intron | 45.0% | |
| TGAACCTCACCAACAACTCA+AGG | - | chr3.2:62162068-62162087 | MS.gene62235:intron | 45.0% | |
| TTCACAAGCAAAGGTCACGA+AGG | - | chr3.2:62162463-62162482 | MS.gene62235:intron | 45.0% | |
| TTCCTAAGGCTCAGTTGGAT+AGG | - | chr3.2:62162325-62162344 | MS.gene62235:intron | 45.0% | |
| ! | AGTTGTTGGTGAGGTTCAAG+TGG | + | chr3.2:62162066-62162085 | None:intergenic | 45.0% |
| ! | CTATCCTGGTCATGCTCTTT+TGG | - | chr3.2:62162002-62162021 | MS.gene62235:intron | 45.0% |
| ! | GAATCCAAAAGAGCATGACC+AGG | + | chr3.2:62162009-62162028 | None:intergenic | 45.0% |
| !! | AATTTAGGTGATGATGGGCC+CGG | - | chr3.2:62162264-62162283 | MS.gene62235:intron | 45.0% |
| !! | TCAGTTGGATAGGTTGATGG+AGG | - | chr3.2:62162335-62162354 | MS.gene62235:intron | 45.0% |
| !! | TTAGCCTTGAGTTGTTGGTG+AGG | + | chr3.2:62162075-62162094 | None:intergenic | 45.0% |
| AAATTGGACCGCTTCACCGA+AGG | + | chr3.2:62162249-62162268 | None:intergenic | 50.0% | |
| AGTCTCAACCATTGCCGAGA+AGG | - | chr3.2:62162130-62162149 | MS.gene62235:intron | 50.0% | |
| AGTTTCAGCCCAGTGGAAGA+AGG | - | chr3.2:62163801-62163820 | MS.gene62235:CDS | 50.0% | |
| CACCGAAGGAAGATCCGAAA+CGG | + | chr3.2:62162235-62162254 | None:intergenic | 50.0% | |
| CTCCGTTTCGGATCTTCCTT+CGG | - | chr3.2:62162230-62162249 | MS.gene62235:intron | 50.0% | |
| GACCCATCACGAACTAAACC+GGG | + | chr3.2:62162285-62162304 | None:intergenic | 50.0% | |
| GAGGATTCCTAAGGCTCAGT+TGG | - | chr3.2:62162320-62162339 | MS.gene62235:intron | 50.0% | |
| GGACCCATCACGAACTAAAC+CGG | + | chr3.2:62162286-62162305 | None:intergenic | 50.0% | |
| GGCTGAAACTCACACGTTTC+TGG | + | chr3.2:62163791-62163810 | None:intergenic | 50.0% | |
| GGGCCCATCATCACCTAAAT+TGG | + | chr3.2:62162265-62162284 | None:intergenic | 50.0% | |
| GGGGAATAATGCTTCCGTGA+AGG | - | chr3.2:62162407-62162426 | MS.gene62235:intron | 50.0% | |
| GGTCCACTAGGGTGAAAATG+AGG | - | chr3.2:62162301-62162320 | MS.gene62235:intron | 50.0% | |
| GTCTCAACCATTGCCGAGAA+GGG | - | chr3.2:62162131-62162150 | MS.gene62235:intron | 50.0% | |
| TACAATCTTCTCCGCCACCT+CGG | + | chr3.2:62162376-62162395 | None:intergenic | 50.0% | |
| TCGGTGAAGCGGTCCAATTT+AGG | - | chr3.2:62162249-62162268 | MS.gene62235:intron | 50.0% | |
| TGAGGTAAGAATACGGCGCT+AGG | + | chr3.2:62163365-62163384 | None:intergenic | 50.0% | |
| ! | GGCTCAGTTGGATAGGTTGA+TGG | - | chr3.2:62162332-62162351 | MS.gene62235:intron | 50.0% |
| !! | AGTTCGTGATGGGTCCACTA+GGG | - | chr3.2:62162290-62162309 | MS.gene62235:intron | 50.0% |
| !! | GGTGGTGGTGGAATCAATGA+AGG | - | chr3.2:62162429-62162448 | MS.gene62235:intron | 50.0% |
| !! | TAGTTCGTGATGGGTCCACT+AGG | - | chr3.2:62162289-62162308 | MS.gene62235:intron | 50.0% |
| AATGCTTCCGTGAAGGGTGG+TGG | - | chr3.2:62162414-62162433 | MS.gene62235:intron | 55.0% | |
| ACGTGTGAGTTTCAGCCCAG+TGG | - | chr3.2:62163794-62163813 | MS.gene62235:CDS | 55.0% | |
| CCACTTGATCGCACCCTTCT+CGG | + | chr3.2:62162147-62162166 | None:intergenic | 55.0% | |
| CGGATCTTCCTTCGGTGAAG+CGG | - | chr3.2:62162238-62162257 | MS.gene62235:intron | 55.0% | |
| GATTCCACCACCACCCTTCA+CGG | + | chr3.2:62162424-62162443 | None:intergenic | 55.0% | |
| TTGATGGAGGAGAGTCGCGA+TGG | - | chr3.2:62162348-62162367 | MS.gene62235:intron | 55.0% | |
| ! | GGCCCGGTTTAGTTCGTGAT+GGG | - | chr3.2:62162280-62162299 | MS.gene62235:intron | 55.0% |
| GATCGCACCCTTCTCGGCAA+TGG | + | chr3.2:62162141-62162160 | None:intergenic | 60.0% | |
| ! | CCGAGAAGGGTGCGATCAAG+TGG | - | chr3.2:62162144-62162163 | MS.gene62235:intron | 60.0% |
| ! | GGGCCCGGTTTAGTTCGTGA+TGG | - | chr3.2:62162279-62162298 | MS.gene62235:intron | 60.0% |
| ! | GCTTCCGTGAAGGGTGGTGG+TGG | - | chr3.2:62162417-62162436 | MS.gene62235:intron | 65.0% |
| GAGTCGCGATGGAGCCGAGG+TGG | - | chr3.2:62162359-62162378 | MS.gene62235:intron | 70.0% | |
| GGAGAGTCGCGATGGAGCCG+AGG | - | chr3.2:62162356-62162375 | MS.gene62235:intron | 70.0% | |
| TCGCGATGGAGCCGAGGTGG+CGG | - | chr3.2:62162362-62162381 | MS.gene62235:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 62161895 | 62163851 | 62161895 | ID=MS.gene62235 |
| chr3.2 | mRNA | 62161895 | 62163851 | 62161895 | ID=MS.gene62235.t1;Parent=MS.gene62235 |
| chr3.2 | exon | 62163261 | 62163851 | 62163261 | ID=MS.gene62235.t1.exon1;Parent=MS.gene62235.t1 |
| chr3.2 | CDS | 62163261 | 62163851 | 62163261 | ID=cds.MS.gene62235.t1;Parent=MS.gene62235.t1 |
| chr3.2 | exon | 62161895 | 62161954 | 62161895 | ID=MS.gene62235.t1.exon2;Parent=MS.gene62235.t1 |
| chr3.2 | CDS | 62161895 | 62161954 | 62161895 | ID=cds.MS.gene62235.t1;Parent=MS.gene62235.t1 |
| Gene Sequence |
| Protein sequence |
