AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62515


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62515.t1 MTR_5g094230 88.773 383 24 1 168 531 353 735 0.0 652
MS.gene62515.t1 MTR_5g094230 72.973 148 34 1 1 142 1 148 2.06e-47 181
MS.gene62515.t1 MTR_5g094230 87.987 308 17 2 168 456 353 659 0.0 535
MS.gene62515.t1 MTR_5g094230 72.973 148 34 1 1 142 1 148 5.56e-48 181
MS.gene62515.t1 MTR_7g029385 96.032 252 10 0 553 804 283 534 5.99e-179 525
MS.gene62515.t1 MTR_3g055610 58.217 359 126 3 169 508 354 707 2.08e-123 387
MS.gene62515.t1 MTR_3g055610 46.923 130 64 1 27 156 26 150 9.02e-26 114
MS.gene62515.t1 MTR_2g450160 42.936 361 182 5 169 510 512 867 2.28e-74 260
MS.gene62515.t1 MTR_2g450160 39.370 127 64 6 29 148 185 305 1.11e-13 75.5
MS.gene62515.t1 MTR_4g131380 39.444 360 191 7 170 510 360 711 1.45e-67 239
MS.gene62515.t1 MTR_5g004910 43.426 251 136 4 553 801 144 390 3.14e-61 212
MS.gene62515.t1 MTR_5g004910 43.426 251 136 4 553 801 184 430 2.48e-60 211
MS.gene62515.t1 MTR_4g109600 22.222 324 198 10 173 451 48 362 9.32e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62515.t1 AT1G78910 73.913 253 65 1 553 804 117 369 2.44e-138 414
MS.gene62515.t1 AT1G78910 73.913 253 65 1 553 804 226 478 2.75e-136 413
MS.gene62515.t1 AT1G66970 54.047 383 152 4 171 530 173 554 1.16e-129 399
MS.gene62515.t1 AT1G66970 54.047 383 152 4 171 530 367 748 1.61e-127 399
MS.gene62515.t1 AT1G66970 51.887 106 51 0 13 118 26 131 1.90e-26 116
MS.gene62515.t1 AT1G66970 54.047 383 152 4 171 530 389 770 4.25e-127 399
MS.gene62515.t1 AT1G66970 42.969 128 51 1 13 118 26 153 2.21e-22 103
MS.gene62515.t1 AT4G26690 54.377 377 148 3 171 528 361 732 1.44e-126 397
MS.gene62515.t1 AT4G26690 57.547 106 43 1 15 118 20 125 1.09e-27 120
MS.gene62515.t1 AT5G55480 51.804 388 160 6 171 534 366 750 2.13e-123 389
MS.gene62515.t1 AT5G55480 42.953 149 72 2 3 138 9 157 1.59e-27 119
MS.gene62515.t1 AT1G66980 51.451 379 158 4 171 529 353 725 2.08e-115 376
MS.gene62515.t1 AT1G66980 43.396 106 43 1 13 118 27 115 7.04e-15 79.7
MS.gene62515.t1 AT1G66980 50.773 388 165 4 171 538 370 751 4.78e-115 376
MS.gene62515.t1 AT1G66980 53.774 106 49 0 13 118 27 132 1.54e-25 114
MS.gene62515.t1 AT1G66980 51.451 379 158 4 171 529 370 742 5.62e-115 375
MS.gene62515.t1 AT1G66980 53.774 106 49 0 13 118 27 132 1.26e-25 114
MS.gene62515.t1 AT1G66980 51.451 379 158 4 171 529 399 771 8.10e-115 375
MS.gene62515.t1 AT1G66980 53.774 106 49 0 13 118 27 132 1.31e-25 114
MS.gene62515.t1 AT5G58050 44.772 373 185 3 171 524 356 726 4.89e-94 311
MS.gene62515.t1 AT5G58050 48.889 90 46 0 29 118 33 122 1.57e-17 87.8
MS.gene62515.t1 AT5G58170 44.236 373 187 3 171 524 356 726 8.43e-94 310
MS.gene62515.t1 AT5G58170 48.889 90 46 0 29 118 33 122 2.36e-17 87.4
MS.gene62515.t1 AT3G20520 46.194 381 168 8 169 521 336 707 2.48e-92 306
MS.gene62515.t1 AT3G20520 42.727 110 59 1 1 110 1 106 4.44e-20 95.9
MS.gene62515.t1 AT3G19440 41.016 256 142 3 548 803 225 471 1.99e-54 196
MS.gene62515.t1 AT3G19440 36.607 112 70 1 548 659 225 335 8.14e-17 83.2
MS.gene62515.t1 AT1G74210 24.033 362 214 11 173 489 47 392 4.34e-15 78.6
MS.gene62515.t1 AT5G08030 23.006 326 195 11 177 456 51 366 9.61e-14 74.3
MS.gene62515.t1 AT5G08030 23.077 325 194 11 177 455 66 380 1.21e-13 73.9

Find 196 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTTGGGCTGTGCGTTTC+CGG 0.101392 7.3:+70380423 None:intergenic
GTGTATCTATGAGCAGATTT+AGG 0.154954 7.3:+70381116 None:intergenic
AAATAAAACTATGAATTATT+TGG 0.161651 7.3:-70383818 MS.gene62515:CDS
ACTATGAATTATTTGGTTAA+TGG 0.169991 7.3:-70383811 MS.gene62515:CDS
TAGTGACTCTGCTTATATTT+TGG 0.242787 7.3:-70383965 MS.gene62515:CDS
AATTCATGCTCCTCTTTCTA+AGG 0.245255 7.3:-70378235 MS.gene62515:intron
GTCCCAGCGTTCTTAGCTTT+TGG 0.248081 7.3:+70382174 None:intergenic
GGGGACTTGGTTCCGGCAGC+AGG 0.249174 7.3:+70380448 None:intergenic
GGTGCTTCTCACATCAAAAT+TGG 0.253340 7.3:-70379372 MS.gene62515:CDS
CCTTATACATTACAATCTTC+TGG 0.273004 7.3:+70379309 None:intergenic
AAGCTACATATCAAAGATAT+TGG 0.273192 7.3:-70378296 MS.gene62515:CDS
GGAGATCAACTCGTTTATTC+AGG 0.277238 7.3:-70381171 MS.gene62515:CDS
AAAAGACTACCTGGTTTAAC+AGG 0.298418 7.3:+70380589 None:intergenic
TGTATCTATGAGCAGATTTA+GGG 0.308737 7.3:+70381117 None:intergenic
TTCTGAACATCTAGGCCTTC+TGG 0.312188 7.3:+70377432 None:intergenic
CTGGTAGACAAGCTCGTATT+TGG 0.319764 7.3:+70381422 None:intergenic
TGCGTTTCCGGGTGGGGACT+TGG 0.323178 7.3:+70380435 None:intergenic
ACCTTGGGCTGTGCGTTTCC+GGG 0.327002 7.3:+70380424 None:intergenic
TTGACGTGGAACGATATAAA+AGG 0.338935 7.3:-70382606 MS.gene62515:CDS
TCCGGGTGGGGACTTGGTTC+CGG 0.339707 7.3:+70380441 None:intergenic
TCTCAAAATACACATTGTTC+AGG 0.340050 7.3:-70382200 MS.gene62515:CDS
TTTCCCTGCAGCCTCAATAT+TGG 0.348515 7.3:-70382229 MS.gene62515:intron
CAACTAATTCTCATATGATT+AGG 0.349841 7.3:+70377249 None:intergenic
GTGCTTGGTCCAATGATAAA+TGG 0.353645 7.3:-70377999 MS.gene62515:CDS
TGCAGGAGGTCGTGGGTGTT+TGG 0.358121 7.3:+70383429 None:intergenic
GCACATCCAATGCCGCTCTA+TGG 0.358321 7.3:-70383930 MS.gene62515:CDS
AGATATTGGGCATTGGTCAT+AGG 0.361356 7.3:-70378282 MS.gene62515:CDS
GTGTATTATTACCCAAGTTT+AGG 0.361783 7.3:+70380626 None:intergenic
ATAGTTGGTGACTATAAATA+TGG 0.361811 7.3:-70377537 MS.gene62515:CDS
CCGGCAGCAGGGCTAGCAGC+TGG 0.365647 7.3:+70380460 None:intergenic
ACCTTGATTATCTCAAAGTA+TGG 0.371442 7.3:-70382855 MS.gene62515:CDS
TCTGGTCTCCGCAACTTGTA+TGG 0.377905 7.3:+70377450 None:intergenic
AATTATGCCTTCCTTCTCCT+TGG 0.379701 7.3:+70378254 None:intergenic
TTCAGGGTGCAGGAATTAAC+GGG 0.381765 7.3:-70381154 MS.gene62515:CDS
GAGTTTGAAAGGTTGAGATC+TGG 0.385464 7.3:+70383865 None:intergenic
TGAAGAAACTTAGCAACGTT+GGG 0.390766 7.3:+70377351 None:intergenic
GGGCTGTGCGTTTCCGGGTG+GGG 0.392874 7.3:+70380429 None:intergenic
CAGCAATGAGTTTGTATCTC+AGG 0.397062 7.3:-70381222 MS.gene62515:intron
CATGAGCATCCATTTATCAT+TGG 0.401375 7.3:+70377990 None:intergenic
GCGACAAAGCGAAGAATATC+AGG 0.403985 7.3:+70377279 None:intergenic
GGAGGGAGTGGAGCCATAGC+TGG 0.404849 7.3:+70380538 None:intergenic
GCATCTGCACTGCAGAGAAT+TGG 0.416764 7.3:-70377379 MS.gene62515:CDS
GTTGATATCGAGCCAACAAC+TGG 0.417668 7.3:-70377477 MS.gene62515:CDS
ATTATGCCTTCCTTCTCCTT+GGG 0.421045 7.3:+70378255 None:intergenic
CCACGGCCAGATTTGATCTC+AGG 0.423046 7.3:+70382645 None:intergenic
TGGGCTGTGCGTTTCCGGGT+GGG 0.427276 7.3:+70380428 None:intergenic
CTCGCGCCATTTGTTTCCAT+CGG 0.433389 7.3:+70377499 None:intergenic
CCATCCTTTGACAATTGAAC+AGG 0.434235 7.3:+70382753 None:intergenic
CACCGACACCCTCGTCAATC+TGG 0.436391 7.3:+70381403 None:intergenic
AGCAAGAATGCAGGAGGTCG+TGG 0.438930 7.3:+70383421 None:intergenic
AGCTACATATCAAAGATATT+GGG 0.443158 7.3:-70378295 MS.gene62515:CDS
CAGTAATACAGAGCTATTAG+TGG 0.447884 7.3:+70381461 None:intergenic
ATTCAGGGTGCAGGAATTAA+CGG 0.449952 7.3:-70381155 MS.gene62515:CDS
CCAGCTGCTAGCCCTGCTGC+CGG 0.450939 7.3:-70380460 MS.gene62515:CDS
AGGAAACAAATGCCTAAACT+TGG 0.454432 7.3:-70380638 MS.gene62515:CDS
TAAGCAGAGTCACTAGAATC+AGG 0.457095 7.3:+70383973 None:intergenic
ATAAAGATTCAGTATTTCCT+AGG 0.457469 7.3:-70381323 MS.gene62515:CDS
AACTCGTTTATTCAGGGTGC+AGG 0.457925 7.3:-70381164 MS.gene62515:CDS
CAATGCAAAATCTTCTTGTA+AGG 0.458133 7.3:-70378470 MS.gene62515:intron
GGTTTAACAGGTTGCATGTA+GGG 0.458661 7.3:+70380601 None:intergenic
CTCTGTATTACTGAAGTTCA+AGG 0.462984 7.3:-70381451 MS.gene62515:CDS
GCTGGAGCTATTTCAGCAAC+CGG 0.469732 7.3:+70380478 None:intergenic
TCCAAGATACCTGATGCTTC+CGG 0.470057 7.3:+70377943 None:intergenic
AACATCCACACCATCTTGTA+TGG 0.470788 7.3:+70382785 None:intergenic
TTCCACAATGTTTGTTTGGG+TGG 0.472351 7.3:+70381284 None:intergenic
TGATGCTTCCGGTAAGTTAG+TGG 0.472426 7.3:+70377954 None:intergenic
AGAAGGAGCCTTGTCTAAGA+TGG 0.476478 7.3:+70383397 None:intergenic
AGTGTCCCTGAGATCAAATC+TGG 0.477767 7.3:-70382651 MS.gene62515:CDS
TGTTTGGGTGGTTGCAAAGC+CGG 0.478963 7.3:+70381296 None:intergenic
GGCCTTGTTATATGCTAAGT+TGG 0.479777 7.3:+70382806 None:intergenic
TGTTACTGAATAACCATTGA+AGG 0.482703 7.3:+70378497 None:intergenic
GATATTGGGCATTGGTCATA+GGG 0.482762 7.3:-70378281 MS.gene62515:CDS
AGCCTATCTTACAGAAAAGC+AGG 0.485222 7.3:-70381568 MS.gene62515:CDS
GGTAGAGCCACCTTTGCCTC+CGG 0.487014 7.3:-70380497 MS.gene62515:CDS
GTTGCAAAGCCGGCATTCCT+AGG 0.488959 7.3:+70381306 None:intergenic
ATTGATGCTTTGAGCAAAGC+AGG 0.489824 7.3:-70381522 MS.gene62515:CDS
ACCGTTATTGCCTCCAGCTA+TGG 0.491500 7.3:-70380551 MS.gene62515:CDS
TCAGTATTTCCTAGGAATGC+CGG 0.491999 7.3:-70381315 MS.gene62515:CDS
TCCATACTTTGAGATAATCA+AGG 0.493201 7.3:+70382854 None:intergenic
TCTTTAGTCAAGGGAGGGAG+TGG 0.495212 7.3:+70380526 None:intergenic
GCCATAGCTGGAGGCAATAA+CGG 0.499138 7.3:+70380550 None:intergenic
AGCTGCGTCCACTAACTTAC+CGG 0.500279 7.3:-70377962 MS.gene62515:CDS
GTAACTGAGTATCGGGTGCT+TGG 0.500717 7.3:-70378014 MS.gene62515:CDS
CCTGTTCAATTGTCAAAGGA+TGG 0.501563 7.3:-70382753 MS.gene62515:CDS
TAGAGCGGCATTGGATGTGC+TGG 0.502236 7.3:+70383933 None:intergenic
ATAGTGTATCTCACCTTCAA+TGG 0.503818 7.3:-70378510 MS.gene62515:CDS
CACTTCCCTTCTGAACATCT+AGG 0.504193 7.3:+70377424 None:intergenic
ATACAGAGCTATTAGTGGAT+TGG 0.504740 7.3:+70381466 None:intergenic
TGAGAAAGGGGCCAATATTG+AGG 0.506432 7.3:+70382218 None:intergenic
TGTCAGGTGCTTATGAATGA+TGG 0.508316 7.3:-70378095 MS.gene62515:intron
GTCCATTGCGCTGAAGCACT+TGG 0.511808 7.3:-70377567 MS.gene62515:CDS
ATTACACCATAGAGCGGCAT+TGG 0.511883 7.3:+70383924 None:intergenic
ACTATGCGGCCACAAAATGA+TGG 0.511990 7.3:+70382927 None:intergenic
AAATGTTAGTAGAGTTTGAA+AGG 0.513604 7.3:+70383854 None:intergenic
ACCCGGAAACGCACAGCCCA+AGG 0.513905 7.3:-70380425 MS.gene62515:intron
AGAGGCTGTAACTGAGTATC+GGG 0.514273 7.3:-70378021 MS.gene62515:CDS
TACCACTTCGTCTTTAGTCA+AGG 0.517727 7.3:+70380516 None:intergenic
TATGCTAAGTTGGTACAAGC+TGG 0.517901 7.3:+70382816 None:intergenic
TTGGGCTGTGCGTTTCCGGG+TGG 0.520398 7.3:+70380427 None:intergenic
AGCGAAGAATATCAGGCTGC+AGG 0.520637 7.3:+70377286 None:intergenic
CTGCAGTGCAGATGCAATTG+AGG 0.521612 7.3:+70377387 None:intergenic
ACAAGGCTCCTTCTCTAGAC+AGG 0.523399 7.3:-70383388 MS.gene62515:intron
TATATCCTCAGCAGCTGCAT+TGG 0.525602 7.3:+70381374 None:intergenic
GATACTCAGTTACAGCCTCT+TGG 0.526169 7.3:+70378024 None:intergenic
GCACAGCCGATGGAAACAAA+TGG 0.530941 7.3:-70377505 MS.gene62515:CDS
ATGAAGAAACTTAGCAACGT+TGG 0.531878 7.3:+70377350 None:intergenic
TTCCAAGTGCTTCAGCGCAA+TGG 0.532011 7.3:+70377565 None:intergenic
ACTAACTTACCGGAAGCATC+AGG 0.532058 7.3:-70377952 MS.gene62515:intron
AATTGACGAAAGATGCAGTT+GGG 0.534847 7.3:-70383897 MS.gene62515:CDS
AGAGCGTAAACCTTAGAAAG+AGG 0.535314 7.3:+70378225 None:intergenic
AAGAGGCTGTAACTGAGTAT+CGG 0.535450 7.3:-70378022 MS.gene62515:CDS
CATTGGAGTTGAGGCAGAGT+CGG 0.538775 7.3:-70379336 MS.gene62515:CDS
ATCAATCTAAGAGATCTGTA+TGG 0.541742 7.3:-70384515 MS.gene62515:CDS
CAATGATAAATGGATGCTCA+TGG 0.541945 7.3:-70377989 MS.gene62515:CDS
ATCCAAAAGCTAAGAACGCT+GGG 0.544735 7.3:-70382176 MS.gene62515:CDS
AGGCGTCTTGATCTTTGTTG+AGG 0.547963 7.3:-70382097 MS.gene62515:intron
AAGAAACAGAGAGAGTGAAA+CGG 0.548275 7.3:+70384557 None:intergenic
ATCTCAAAGTATGGAGCAAG+TGG 0.553378 7.3:-70382846 MS.gene62515:CDS
CATAGGGACTCCCAAGGAGA+AGG 0.556238 7.3:-70378265 MS.gene62515:CDS
ACCACTTCGTCTTTAGTCAA+GGG 0.557451 7.3:+70380517 None:intergenic
TGGTTTAACAGGTTGCATGT+AGG 0.559436 7.3:+70380600 None:intergenic
CTAATCATATGAGAATTAGT+TGG 0.559535 7.3:-70377248 MS.gene62515:CDS
TTGGTTTCTAGTGAAGACAT+TGG 0.559937 7.3:-70379353 MS.gene62515:CDS
ATTTCAGCAACCGGAGGCAA+AGG 0.561653 7.3:+70380487 None:intergenic
GGGACTTGGTTCCGGCAGCA+GGG 0.563994 7.3:+70380449 None:intergenic
TAGTGAAGACATTGGAGTTG+AGG 0.564856 7.3:-70379345 MS.gene62515:CDS
GAGATCAACTCGTTTATTCA+GGG 0.565693 7.3:-70381170 MS.gene62515:CDS
GCCGGAACCAAGTCCCCACC+CGG 0.567617 7.3:-70380442 MS.gene62515:CDS
GCACTTGGAACACCGATAGT+TGG 0.568101 7.3:-70377552 MS.gene62515:CDS
AGTGAAACGGAGAGAGCGCG+TGG 0.568312 7.3:+70384570 None:intergenic
ATATCAAAGATATTGGGCAT+TGG 0.568549 7.3:-70378289 MS.gene62515:CDS
AATCCAAAAGCTAAGAACGC+TGG 0.570071 7.3:-70382177 MS.gene62515:CDS
TATTTATAGTCACCAACTAT+CGG 0.570347 7.3:+70377540 None:intergenic
TCAGGCTGCAGGCTAAGTGA+AGG 0.573530 7.3:+70377297 None:intergenic
CCTGAGATCAAATCTGGCCG+TGG 0.575011 7.3:-70382645 MS.gene62515:CDS
GGGAGTGGAGCCATAGCTGG+AGG 0.575933 7.3:+70380541 None:intergenic
CACGGCCAGATTTGATCTCA+GGG 0.585180 7.3:+70382646 None:intergenic
CTGTTCAATTGTCAAAGGAT+GGG 0.585655 7.3:-70382752 MS.gene62515:CDS
GTCAGGTGCTTATGAATGAT+GGG 0.586087 7.3:-70378094 MS.gene62515:intron
TACAAGTTGCGGAGACCAGA+AGG 0.586829 7.3:-70377447 MS.gene62515:CDS
AGAAGGCCTAGATGTTCAGA+AGG 0.587215 7.3:-70377430 MS.gene62515:CDS
CCACTGGTCATCTCACATTG+TGG 0.589533 7.3:-70384012 MS.gene62515:CDS
TATAACAAGGCCATACAAGA+TGG 0.590025 7.3:-70382795 MS.gene62515:CDS
TCTGTATGGAACACACTCAC+AGG 0.590984 7.3:-70384501 MS.gene62515:intron
TAAGATGGAAGCAAGAATGC+AGG 0.593876 7.3:+70383412 None:intergenic
TCTTGCTTCCATCTTAGACA+AGG 0.593915 7.3:-70383405 MS.gene62515:CDS
CTGGAAAACCATACAAGTTG+CGG 0.594783 7.3:-70377458 MS.gene62515:CDS
TGACTATAAATATGGCTGGT+TGG 0.595275 7.3:-70377529 MS.gene62515:CDS
CAAGGCCATACAAGATGGTG+TGG 0.598251 7.3:-70382790 MS.gene62515:CDS
GCAAGAATGCAGGAGGTCGT+GGG 0.598938 7.3:+70383422 None:intergenic
CTGTCCTGTTCAATTGTCAA+AGG 0.600320 7.3:-70382757 MS.gene62515:CDS
TCCCTTGACTAAAGACGAAG+TGG 0.602020 7.3:-70380518 MS.gene62515:CDS
TGCTACCAATGCAGCTGCTG+AGG 0.602072 7.3:-70381379 MS.gene62515:CDS
GGAAACAAATGCCTAAACTT+GGG 0.602318 7.3:-70380637 MS.gene62515:CDS
ATCCCCTACCTGTCTAGAGA+AGG 0.604680 7.3:+70383380 None:intergenic
CACTAGTCTCTCTGTCAAGA+CGG 0.605395 7.3:+70378560 None:intergenic
GCTGGTTGGTGCACAGCCGA+TGG 0.610531 7.3:-70377515 MS.gene62515:CDS
TCAGCAACCGGAGGCAAAGG+TGG 0.610662 7.3:+70380490 None:intergenic
TTGGTGACTATAAATATGGC+TGG 0.611844 7.3:-70377533 MS.gene62515:CDS
GGTGAGGCTCTATACTCGAA+TGG 0.614770 7.3:+70378045 None:intergenic
CTTCGTCTTTAGTCAAGGGA+GGG 0.616003 7.3:+70380521 None:intergenic
AAAGCAGGTTATGACAAACC+AGG 0.618794 7.3:-70381507 MS.gene62515:CDS
ATTGGATGTGCTGGTTTGCG+CGG 0.622307 7.3:+70383942 None:intergenic
TCAGTTACAGCCTCTTGGTG+AGG 0.622652 7.3:+70378029 None:intergenic
CAGGCTGCAGGCTAAGTGAA+GGG 0.625315 7.3:+70377298 None:intergenic
GAATGATGGGAAGACAGAGA+GGG 0.628778 7.3:-70378081 MS.gene62515:CDS
ACTTCGTCTTTAGTCAAGGG+AGG 0.630202 7.3:+70380520 None:intergenic
GCCTATCTTACAGAAAAGCA+GGG 0.634940 7.3:-70381567 MS.gene62515:CDS
TTAACAGGTTGCATGTAGGG+AGG 0.634977 7.3:+70380604 None:intergenic
GGGACTCCCAAGGAGAAGGA+AGG 0.636146 7.3:-70378261 MS.gene62515:CDS
TACCAGATTGACGAGGGTGT+CGG 0.637510 7.3:-70381405 MS.gene62515:CDS
GAAGGCCTAGATGTTCAGAA+GGG 0.641222 7.3:-70377429 MS.gene62515:CDS
GAGTATAGAGCCTCACCAAG+AGG 0.645986 7.3:-70378039 MS.gene62515:CDS
TGAATGATGGGAAGACAGAG+AGG 0.649315 7.3:-70378082 MS.gene62515:CDS
GAAGAAACTTAGCAACGTTG+GGG 0.650904 7.3:+70377352 None:intergenic
TTTCTTCTCAGATTCAACTG+TGG 0.657126 7.3:-70381192 MS.gene62515:CDS
CAATTGACGAAAGATGCAGT+TGG 0.658027 7.3:-70383898 MS.gene62515:CDS
TACATGCAACCTGTTAAACC+AGG 0.658394 7.3:-70380598 MS.gene62515:CDS
TTGAAAGGTTGAGATCTGGA+AGG 0.659984 7.3:+70383869 None:intergenic
ATTGGTCATAGGGACTCCCA+AGG 0.667248 7.3:-70378271 MS.gene62515:CDS
AAGCAGGTTATGACAAACCA+GGG 0.667924 7.3:-70381506 MS.gene62515:CDS
GAAGCTAGTTTGAGCAACTG+TGG 0.669967 7.3:+70382689 None:intergenic
CAAAGCATCAATGACAACAT+CGG 0.677035 7.3:+70381533 None:intergenic
AGTTGAACGAAAATATGCCA+CGG 0.677502 7.3:+70382628 None:intergenic
GATGGAAGCAAGAATGCAGG+AGG 0.686872 7.3:+70383415 None:intergenic
CAATGTGAGATGACCAGTGG+TGG 0.695620 7.3:+70384015 None:intergenic
GCTTGTCTACCAGATTGACG+AGG 0.696575 7.3:-70381412 MS.gene62515:CDS
CTTGTCTACCAGATTGACGA+GGG 0.699339 7.3:-70381411 MS.gene62515:CDS
CGTCTTGACAGAGAGACTAG+TGG 0.704190 7.3:-70378559 MS.gene62515:CDS
TAGTCTCTCTGTCAAGACGG+TGG 0.705824 7.3:+70378563 None:intergenic
TACCAACTTAGCATATAACA+AGG 0.705932 7.3:-70382808 MS.gene62515:CDS
GGAGCTATTTCAGCAACCGG+AGG 0.710777 7.3:+70380481 None:intergenic
TTGCACATTACACCATAGAG+CGG 0.719699 7.3:+70383918 None:intergenic
CAACAACGATGAACACTATG+CGG 0.723294 7.3:+70382913 None:intergenic
TCAGGGTGCAGGAATTAACG+GGG 0.732530 7.3:-70381153 MS.gene62515:CDS
CCACAATGTGAGATGACCAG+TGG 0.782734 7.3:+70384012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr7.3 gene 70377221 70384601 70377221 ID=MS.gene62515
chr7.3 mRNA 70377221 70384601 70377221 ID=MS.gene62515.t1;Parent=MS.gene62515
chr7.3 exon 70384502 70384601 70384502 ID=MS.gene62515.t1.exon1;Parent=MS.gene62515.t1
chr7.3 CDS 70384502 70384601 70384502 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70383800 70384042 70383800 ID=MS.gene62515.t1.exon2;Parent=MS.gene62515.t1
chr7.3 CDS 70383800 70384042 70383800 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70383389 70383461 70383389 ID=MS.gene62515.t1.exon3;Parent=MS.gene62515.t1
chr7.3 CDS 70383389 70383461 70383389 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70382598 70382968 70382598 ID=MS.gene62515.t1.exon4;Parent=MS.gene62515.t1
chr7.3 CDS 70382598 70382968 70382598 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70382098 70382240 70382098 ID=MS.gene62515.t1.exon5;Parent=MS.gene62515.t1
chr7.3 CDS 70382098 70382240 70382098 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70381290 70381595 70381290 ID=MS.gene62515.t1.exon6;Parent=MS.gene62515.t1
chr7.3 CDS 70381290 70381595 70381290 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70381114 70381234 70381114 ID=MS.gene62515.t1.exon7;Parent=MS.gene62515.t1
chr7.3 CDS 70381114 70381234 70381114 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70380426 70380658 70380426 ID=MS.gene62515.t1.exon8;Parent=MS.gene62515.t1
chr7.3 CDS 70380426 70380658 70380426 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70379322 70379393 70379322 ID=MS.gene62515.t1.exon9;Parent=MS.gene62515.t1
chr7.3 CDS 70379322 70379393 70379322 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70378471 70378587 70378471 ID=MS.gene62515.t1.exon10;Parent=MS.gene62515.t1
chr7.3 CDS 70378471 70378587 70378471 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70378236 70378337 70378236 ID=MS.gene62515.t1.exon11;Parent=MS.gene62515.t1
chr7.3 CDS 70378236 70378337 70378236 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70377953 70378111 70377953 ID=MS.gene62515.t1.exon12;Parent=MS.gene62515.t1
chr7.3 CDS 70377953 70378111 70377953 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
chr7.3 exon 70377221 70377595 70377221 ID=MS.gene62515.t1.exon13;Parent=MS.gene62515.t1
chr7.3 CDS 70377221 70377595 70377221 ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1
Gene Sequence

>MS.gene62515

ATGTGTACTCCACGCGCTCTCTCCGTTTCACTCTCTCTGTTTCTTCTTCTAGCACTTGTTTCAGATCAATCTAAGAGATCTGTATGGAACACACTCACAGGTATGTGTTGAAAGATCTTTTTTTTATCAACTTTGATAGTGTTAATTTGAGCTTATTAGAGATTTGAATTCTCATAAATGTTAGTTAATTGAGGTAGCTAAGAATAGTTAGATAATGTTTATCGAGCTGAACTGAATCATGGAAAATCTTATCAGAAAAATGAAACCATTGATATTTATAGTAGTTTTTATTTCAGTTAGAATTTAGAAACTGTTATGGTCTATATCTTTTGATGCATGTTAATTCTGCATCTTCTCTAGATAATTTACCTAGTTAATTCAATTTGAGAAAGTTTCTTAAATTGAAAGAATCTTGTAATAAACAATAATTTCTCATTTAAGTTGAAATTAGTTTCTGTATCTTAAGGTTTTTAAGGAGCTTTCCAGTTTAACTTTGTCTTTTGGGAAGAATCATAAATTTGTAGGAAGCTTACAAAAGTTAAACAACTTTGTTTTGCAGGAAGTCCACCACTGGTCATCTCACATTGTGGTTTTTCGGGCATATTTCCTGATTCTAGTGACTCTGCTTATATTTTGGCCGCGCAAACCAGCACATCCAATGCCGCTCTATGGTGTAATGTGCAATTGACGAAAGATGCAGTTGGGATTTGCCTTCCAGATCTCAACCTTTCAAACTCTACTAACATTTTCGGTGTTTTCCCAAATAAAACTATGAATTATTTGGTTAATGGTGTACCCACAAGTGGCTATTTTTCTGTGGACTACAAGTTCGAGGACCTATCCAATCCCCTACAAATTTCTCCATACAAATATATTCATTGAATAATCTCTTCAAAGTAAGGATTTATCAATTGAATTGGCCTGCTAAATGATACATAATCCTGTGCTTAAGCTGTGTATAACTAAAAACTAGTTTAACTTTACAATCTTGGTAGGGAGGTACTTGTTTCTTGCCATGCGGGTGCTCCTACAAACTATACAATCATTGTTCAATAATAGGACACTGATGGAATCATGTTGACCTTATCCGATTTCTTGTTCTAATGCTGATGGTGCACACACAAAATTTACTAAAAATAGAATATCTTTTCCAAACACCCACGACCTCCTGCATTCTTGCTTCCATCTTAGACAAGGCTCCTTCTCTAGACAGGTAGGGGATCTAGTTATATACCCTTTCATATAAGAAATTATCATAAAAATTTCCTTTCAATTTTCAATTTCCTTACTATATCAAAGAAAATAAAGATTTCCATCCTCTTGGTTTTTCATGCCTATTAACTATCCATACTGTCATTTTCTTCAATTTTAAAATCCTTTTACATCCTTTAAACACACGACAAAGGTGTGCAATTGATATTAATTTCTTGTTATTTTACATACTTAAAAATCGTAACCTCAGAATATATATGTATGCTTGTGTGTACTATTCTTTAGTCTCTATTTAAGGTGTTGAGTTTGTCTTCTCATTTTGCAGATTGCTTTGCTCACATAGGCAACAATGCTAAAGAAGAGGTACATTTTGTCTTGATCTTATATATGTATTCTCACCTTGTTGATCAATAATTCCTAGTCGTTTCTTTGCACGATTTCCATCATTTTGTGGCCGCATAGTGTTCATCGTTGTTGACTTGTTGCTCTCACTTCTTATATTTTCAGATAAAACCTTGATTATCTCAAAGTATGGAGCAAGTGGAGATTTTCCAGCTTGTACCAACTTAGCATATAACAAGGCCATACAAGATGGTGTGGATGTTCTTGACTGTCCTGTTCAATTGTCAAAGGATGGGACACCATTTTGCTTAAAATCAATTGATCTTCTAGAGAGTACCACAGTTGCTCAAACTAGCTTCAGCGATTTAGCAGTGAGTGTCCCTGAGATCAAATCTGGCCGTGGCATATTTTCGTTCAACTTGACGTGGAACGATATAAAAGGACTGACCCGTAAGTCAAAGAAAGTTCTATAGTTTTTTTTCCAGCAGTTAAATATTATTCAGACTTTCCATATTTGCATGGTGGTAACCCAGACTCTTCTAAGTCTAATTGACTGATACTTCAATAAGCCATAAGCTCAGAATCAGATAGAGATACATGCATTAAAAAAGTGTGTTTTAGGAAAAATTTAGCTTAGAACTTCACTTTATAGGATAATCAAAGATTCACGGGTTGTTTTCCATTGAAAATTTTTCGCTTTTGGTGTTTTGCACTTACATTGATTTGCATTGTTTTGAAGAAAGAATATGTTTTAATTTTTATAAAAGAACAATTGACATGTTTTTCTGTTCCCTATTTTCCCTGCAGCCTCAATATTGGCCCCTTTCTCAAAATACACATTGTTCAGGAATCCAAAAGCTAAGAACGCTGGGACATTTTTAACATTATCAGACTTCTTGTCGTTAACAAAAAATCAGACTTCTCTATCAGGCGTCTTGATCTTTGTTGAGGTGTGTTCTATCATGCCTATTATTCCTGTATATAATTTATTATTTCAGCTGTTATTCAAACTCATAATGTTTATAAGATTAGTGCAAATTTAATGGTTTAGGGCCGCTTACTTCATAGTTGGTATGACTGATTATCTGGTTTCACCTTGTTGCTTTGAAAGGCCTGCACCCTGCATGATCCAGAAAATAAGAATAGGAGATATCAAGTCTGTCGTGTATTGTTTTTGCATTGTTACGACACTTGTGAGTATGATATAATAAAAAGGGCAAATGACAGACTGACTTGCCAAAAGTGACATTCCTGTGAATTTCCGTTCTAGTATTTCTTCACGAACTCTGCCCGCTGAGTTACTTCAACCAAAGAAAAACAAATTGTTTTCTATTTGGGCATTGGAGAGATTTATAACGATTGCATATTCTAAGCCTAAGAACTTTTTGTTTCAAATTTATTTTCTTTAATTTTTTATTGAATAAACATTATGTTGCATTTTTCTGTTATCAGAATGCAGCCTATCTTACAGAAAAGCAGGGATTAAGTGTGACCGATGTTGTCATTGATGCTTTGAGCAAAGCAGGTTATGACAAACCAGGGAGCCAAAAAGTTTATATCCAATCCACTAATAGCTCTGTATTACTGAAGTTCAAGGAGAAAACCAAATACGAGCTTGTCTACCAGATTGACGAGGGTGTCGGTGATGCTACCAATGCAGCTGCTGAGGATATAAAAACATTTGCTAGTTCTGTGGTCGTCAATAAAGATTCAGTATTTCCTAGGAATGCCGGCTTTGCAACCACCCAAACAAACATTGTGGAAAAGCTACAAGCTTCTAACCTCAGTTTTCGTAGAAACATTCAGCAATGAGTTTGTATCTCAGGCATTTGATTTCTTCTCAGATTCAACTGTGGAGATCAACTCGTTTATTCAGGGTGCAGGAATTAACGGGGTCATTACAGACTTCCCTAAATCTGCTCATAGATACACAAGTAAGTGCTAGAAAATTATATTGTACCATTGATAGGAGTTTAATTGGGCCGGATACTATTGAGGGTGATGTGCTGGTGGGCTTTAAAAATGAGAAGCCCAAAGTGTGGAGGGTTTACACTAGGAAAAAGAAGGAAAATAGTGTGGGAAACATGCGAGTAGTGAGCTGTTAGATAGTAGTAGATTCCCCTAATAAAAAGGTGTATGAGGGGAAGGAGTAGGTAGGATTGAGTTTGTTAAACTTGATATGGTCAAGCAGTGAGTTTTCTCACCGAGGAGCTTTGCTCTGGGCTGCATTTTGCATATTGTTCATCCATTTCTTCATTTATTAATATAAATTCATCCACTTCCTTGATTAACTTTGTTTTACTTTACAATTGTTATCTCTGCTCTATCAACCATCAAGTCTGTTATCCCTCAATTATCGACATAATAATTGTTCTCTATTCTTTTGCAGGAAACAAATGCCTAAACTTGGGTAATAATACACCTCCCTACATGCAACCTGTTAAACCAGGTAGTCTTTTTTCAGTCATTAGCAAACCGTTATTGCCTCCAGCTATGGCTCCACTCCCTCCCTTGACTAAAGACGAAGTGGTAGAGCCACCTTTGCCTCCGGTTGCTGAAATAGCTCCAGCTGCTAGCCCTGCTGCCGGAACCAAGTCCCCACCCGGAAACGCACAGCCCAAGGTTTCTGCTTGCTTCTTCTTGTCCAGTCTTGCTGTGTTTGTAGCTTCTATTTTTCTGCTTTGAGTGAAATCATCTCTTCACTTCCTGCCAAAAAGAAGAAAAAAGAAAGAAAAAGGAGAAGGTGTCTTTGCTGGTTTCAACCCTCTATTGCCTCATGATCTCTGCTAGGATAGTGGCATGACACTTATGGCTTCACACTGCATGAATAATCCACAATTTTTATTTTTTTTAACTTAGGAGCAAATTCTTTTCATTGTAGCTATGCATGTTCATTCTAAGTTCTCCAATTGCTTCTTGGGTTTGTACTATTAGTACAAAATCCTTTTTGGTGTATATCTACAGACTACGAATTCATCTTAGATGTTTATCTTGTATCATATATTTATATTTGTTGGTGTGCATTTGGCATTAGATAAACAAGTTGAGGTTCGGATGAAACTTTTTTGAGAATCAAACAGAGCATGTGTATTTTGTTGATTGTTTTAATATAAGTAGATTTTGTTTTGATCGTGAAATTCAACAGAAATTATAATAACGTAGATTGAATTTGAAGAGATTATCTAAACCCTCCCATTCCAGTTTTTTAGTTCCTCCATTTAAAAATAAAATAAAAAATTGTATCATGAAGAAAAATATACTCTCCCGTTCAAGTTTTTAGAGATTAGTTATAAATTTTTATATTTTCCTCTTTTTCTTTTATACATAGACGATCTAAGCCCAAAAAATTTCCTTTCTTCTTTTAATCTAAAGTACTCTCCTCTCCTCCCCTCTAAACTTTCTAACTGACCCTAATGTTGCAACATACAAGGTCACCTCATCAATAACAAATTGTAACATTTGAAGAAATTGCAGCTGAAATAAGGTGCCTCGTTAATTTAAAATCAAATTCAAAGGAACCTATGGATTATATTAGTTCTAGATAGGAAATATCTTCCTACATGAGACAATGTTCGAGAACATCAAACTAATTAATGTTTGTTTTTGGAGTGTGTAATTTGTAGTTTTGCACTATTTTTGTTTACATTTTCTTAGGTGCTTCTCACATCAAAATTGGTTTCTAGTGAAGACATTGGAGTTGAGGCAGAGTCGGCTTGCCAGAAGATTGTAATGTATAAGGAAAACCTTCTTCTTTTTCCTTTTGGAGAAACGAATAATTAATTTGTTTTTGCAGTCTTATCTGAAAGCATTCGGCCATAAGTTTTATAAACGATGCTATCAAGTTATTTATATCTTGTCAGATGCTCATAACTTATTGATTGTCAAATGCTCTTTTTATTTGAATATAGTTCTGCTTGTGTTTTAGTTTGTTTCCATTGTTTGTAATACACAATCTACTATAATCAATTGATAAGTTATTGTTTTGATTTAATACAAATTGGTAGCATATTTTATTGGTCTAGATTGCCTTGTTTATTCTACAATATTTCTGCATTATCATGTTTAAATTTATGTTCATATATGCATCTTACCTTGGACATGAAATTTATTGATCTAGAAGTAGAAAAGACATATGGCCTATTGAGAAGATTTTAATTGGACTCAGGCTTCCATTATATGACTTGACAATTCTATAACTATTGTTAAGAGGGGACATAAACCGACTTAGAGAGGCATTTGGGACATTATCAATTGGGTATTGGAGGTTCAGCTAAGAAGACGAATAACGAACTGGCTCTCTCAGTCAAGTGAATTTCTGCTTTCATATTTACTCCTTCATCTTGTAACGAGCTAGCTCCATTGTTTCCCATCTTAGTCTTTAAATATCAAATACAAAAGTTCTTGGTCATTTAATATCAGTTTGGGTCCTATCAAATCAATTCTTATGTTGGTTTTTTCAGGTCCACCGTCTTGACAGAGAGACTAGTGGCATCCTTTTAATGGGGAGAACAAAAGATAGTGTATCTCACCTTCAATGGTTATTCAGTAACACAAACAATGCAAAATCTTCTTGTAAGGTGCCTTTTCTACACGAAGTATTCAACTGCTGTTTTCATACACATCATTTAGCTTGTCAATGCAGTATCAAAGATGCATTAACAACAATTTTATTTTTCCATTTGAACTTTAACTCTCCCTGGACTATTTTAGGCTTGGAATGATGCATGTGAAGCTACATATCAAAGATATTGGGCATTGGTCATAGGGACTCCCAAGGAGAAGGAAGGCATAATTCATGCTCCTCTTTCTAAGGTTTACGCTCTTTCTCTTGTTTAGTTTGTGTGTTTACATCCAATGATAGTTTGTAACATGCTTAATGTCACTGATATCTTCTAATGTGTTATTGGTTGTGTTTATATATGCGATCTTATGTCAGGTGCTTATGAATGATGGGAAGACAGAGAGGGTAATGCTAGCTCACCATTCGAGTATAGAGCCTCACCAAGAGGCTGTAACTGAGTATCGGGTGCTTGGTCCAATGATAAATGGATGCTCATGGATTGAGCTGCGTCCACTAACTTACCGGAAGCATCAGGTATCTTGGATACTGCTATAAATTCTCTATTCAAATGAACTGTACTGGTAAAAAAGCTACACTTTCAAGTGGCATGTGAGATTAGCGGTGAGTTTGGCAGAATAACAATGTGCTACCGTGATTTTGACAAAAGCTACACTTAGGAGCTTCAACAAAATCACAAAGAGACCATTTTTTTGAAGTAGCTTTTCACACCTTGAAAATTGTTATCGACAGTTATGCTATATTTATAGTAGAGAAGTAGGACCAGTACTATAGGCACTATAACTAAGTTTTGACCTTAATATATATAGTGATTTTGCTGAGTTAAAGCAACATGTTCCTAACTTAATTTGATTTCTGCTCCTTTTTTACCAGCTACGTGTCCATTGCGCTGAAGCACTTGGAACACCGATAGTTGGTGACTATAAATATGGCTGGTTGGTGCACAGCCGATGGAAACAAATGGCGCGAGTTGATATCGAGCCAACAACTGGAAAACCATACAAGTTGCGGAGACCAGAAGGCCTAGATGTTCAGAAGGGAAGTGTTTTATCTAAGGTGCCTCAATTGCATCTGCACTGCAGAGAATTGGCACTCCCCAACGTTGCTAAGTTTCTTCATATTTTAGGAAAGAGTTCAGAAGAACTTCACCCTTCACTTAGCCTGCAGCCTGATATTCTTCGCTTTGTCGCAACAATGCCTAATCATATGAGAATTAGTTGGAATCTTATGTCATCATATTTAGTTTGA

Protein sequence

>MS.gene62515.t1

MCTPRALSVSLSLFLLLALVSDQSKRSVWNTLTGSPPLVISHCGFSGIFPDSSDSAYILAAQTSTSNAALWCNVQLTKDAVGICLPDLNLSNSTNIFGVFPNKTMNYLVNGVPTKYLFQTPTTSCILASILDKAPSLDSRFFARFPSFCGRIVFIVVDLLLSLLIFSDKTLIISKYGASGDFPACTNLAYNKAIQDGVDVLDCPVQLSKDGTPFCLKSIDLLESTTVAQTSFSDLAVSVPEIKSGRGIFSFNLTWNDIKGLTPSILAPFSKYTLFRNPKAKNAGTFLTLSDFLSLTKNQTSLSGVLIFVENAAYLTEKQGLSVTDVVIDALSKAGYDKPGSQKVYIQSTNSSVLLKFKEKTKYELVYQIDEGVGDATNAAAEDIKTFASSVVVNKDSVFPRNAGFATTQTNIFVSQAFDFFSDSTVEINSFIQGAGINGVITDFPKSAHRYTRNKCLNLGNNTPPYMQPVKPGSLFSVISKPLLPPAMAPLPPLTKDEVVEPPLPPVAEIAPAASPAAGTKSPPGNAQPKVLLTSKLVSSEDIGVEAESACQKIVHRLDRETSGILLMGRTKDSVSHLQWLFSNTNNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGIIHAPLSKVLMNDGKTERVMLAHHSSIEPHQEAVTEYRVLGPMINGCSWIELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWLVHSRWKQMARVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPQLHLHCRELALPNVAKFLHILGKSSEELHPSLSLQPDILRFVATMPNHMRISWNLMSSYLV