Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62515.t1 | XP_003617676.1 | 58.9 | 735 | 98 | 6 | 1 | 531 | 1 | 735 | 1.20E-206 | 729.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62515.t1 | Q5XET6 | 73.9 | 253 | 65 | 1 | 553 | 804 | 226 | 478 | 5.2e-113 | 410.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62515.t1 | G7K4B9 | 58.9 | 735 | 98 | 6 | 1 | 531 | 1 | 735 | 9.0e-207 | 729.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060068 | MS.gene62515 | 0.920375 | 1.39E-87 | -1.69E-46 |
MS.gene060070 | MS.gene62515 | 0.919979 | 2.28E-87 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene62515 | MS.gene020669 | PPI |
MS.gene62515 | MS.gene63842 | PPI |
MS.gene62515 | MS.gene81414 | PPI |
MS.gene62515 | MS.gene060072 | PPI |
MS.gene62515 | MS.gene64603 | PPI |
MS.gene62515 | MS.gene79189 | PPI |
MS.gene060072 | MS.gene62515 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62515.t1 | MTR_5g094230 | 88.773 | 383 | 24 | 1 | 168 | 531 | 353 | 735 | 0.0 | 652 |
MS.gene62515.t1 | MTR_5g094230 | 72.973 | 148 | 34 | 1 | 1 | 142 | 1 | 148 | 2.06e-47 | 181 |
MS.gene62515.t1 | MTR_5g094230 | 87.987 | 308 | 17 | 2 | 168 | 456 | 353 | 659 | 0.0 | 535 |
MS.gene62515.t1 | MTR_5g094230 | 72.973 | 148 | 34 | 1 | 1 | 142 | 1 | 148 | 5.56e-48 | 181 |
MS.gene62515.t1 | MTR_7g029385 | 96.032 | 252 | 10 | 0 | 553 | 804 | 283 | 534 | 5.99e-179 | 525 |
MS.gene62515.t1 | MTR_3g055610 | 58.217 | 359 | 126 | 3 | 169 | 508 | 354 | 707 | 2.08e-123 | 387 |
MS.gene62515.t1 | MTR_3g055610 | 46.923 | 130 | 64 | 1 | 27 | 156 | 26 | 150 | 9.02e-26 | 114 |
MS.gene62515.t1 | MTR_2g450160 | 42.936 | 361 | 182 | 5 | 169 | 510 | 512 | 867 | 2.28e-74 | 260 |
MS.gene62515.t1 | MTR_2g450160 | 39.370 | 127 | 64 | 6 | 29 | 148 | 185 | 305 | 1.11e-13 | 75.5 |
MS.gene62515.t1 | MTR_4g131380 | 39.444 | 360 | 191 | 7 | 170 | 510 | 360 | 711 | 1.45e-67 | 239 |
MS.gene62515.t1 | MTR_5g004910 | 43.426 | 251 | 136 | 4 | 553 | 801 | 144 | 390 | 3.14e-61 | 212 |
MS.gene62515.t1 | MTR_5g004910 | 43.426 | 251 | 136 | 4 | 553 | 801 | 184 | 430 | 2.48e-60 | 211 |
MS.gene62515.t1 | MTR_4g109600 | 22.222 | 324 | 198 | 10 | 173 | 451 | 48 | 362 | 9.32e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62515.t1 | AT1G78910 | 73.913 | 253 | 65 | 1 | 553 | 804 | 117 | 369 | 2.44e-138 | 414 |
MS.gene62515.t1 | AT1G78910 | 73.913 | 253 | 65 | 1 | 553 | 804 | 226 | 478 | 2.75e-136 | 413 |
MS.gene62515.t1 | AT1G66970 | 54.047 | 383 | 152 | 4 | 171 | 530 | 173 | 554 | 1.16e-129 | 399 |
MS.gene62515.t1 | AT1G66970 | 54.047 | 383 | 152 | 4 | 171 | 530 | 367 | 748 | 1.61e-127 | 399 |
MS.gene62515.t1 | AT1G66970 | 51.887 | 106 | 51 | 0 | 13 | 118 | 26 | 131 | 1.90e-26 | 116 |
MS.gene62515.t1 | AT1G66970 | 54.047 | 383 | 152 | 4 | 171 | 530 | 389 | 770 | 4.25e-127 | 399 |
MS.gene62515.t1 | AT1G66970 | 42.969 | 128 | 51 | 1 | 13 | 118 | 26 | 153 | 2.21e-22 | 103 |
MS.gene62515.t1 | AT4G26690 | 54.377 | 377 | 148 | 3 | 171 | 528 | 361 | 732 | 1.44e-126 | 397 |
MS.gene62515.t1 | AT4G26690 | 57.547 | 106 | 43 | 1 | 15 | 118 | 20 | 125 | 1.09e-27 | 120 |
MS.gene62515.t1 | AT5G55480 | 51.804 | 388 | 160 | 6 | 171 | 534 | 366 | 750 | 2.13e-123 | 389 |
MS.gene62515.t1 | AT5G55480 | 42.953 | 149 | 72 | 2 | 3 | 138 | 9 | 157 | 1.59e-27 | 119 |
MS.gene62515.t1 | AT1G66980 | 51.451 | 379 | 158 | 4 | 171 | 529 | 353 | 725 | 2.08e-115 | 376 |
MS.gene62515.t1 | AT1G66980 | 43.396 | 106 | 43 | 1 | 13 | 118 | 27 | 115 | 7.04e-15 | 79.7 |
MS.gene62515.t1 | AT1G66980 | 50.773 | 388 | 165 | 4 | 171 | 538 | 370 | 751 | 4.78e-115 | 376 |
MS.gene62515.t1 | AT1G66980 | 53.774 | 106 | 49 | 0 | 13 | 118 | 27 | 132 | 1.54e-25 | 114 |
MS.gene62515.t1 | AT1G66980 | 51.451 | 379 | 158 | 4 | 171 | 529 | 370 | 742 | 5.62e-115 | 375 |
MS.gene62515.t1 | AT1G66980 | 53.774 | 106 | 49 | 0 | 13 | 118 | 27 | 132 | 1.26e-25 | 114 |
MS.gene62515.t1 | AT1G66980 | 51.451 | 379 | 158 | 4 | 171 | 529 | 399 | 771 | 8.10e-115 | 375 |
MS.gene62515.t1 | AT1G66980 | 53.774 | 106 | 49 | 0 | 13 | 118 | 27 | 132 | 1.31e-25 | 114 |
MS.gene62515.t1 | AT5G58050 | 44.772 | 373 | 185 | 3 | 171 | 524 | 356 | 726 | 4.89e-94 | 311 |
MS.gene62515.t1 | AT5G58050 | 48.889 | 90 | 46 | 0 | 29 | 118 | 33 | 122 | 1.57e-17 | 87.8 |
MS.gene62515.t1 | AT5G58170 | 44.236 | 373 | 187 | 3 | 171 | 524 | 356 | 726 | 8.43e-94 | 310 |
MS.gene62515.t1 | AT5G58170 | 48.889 | 90 | 46 | 0 | 29 | 118 | 33 | 122 | 2.36e-17 | 87.4 |
MS.gene62515.t1 | AT3G20520 | 46.194 | 381 | 168 | 8 | 169 | 521 | 336 | 707 | 2.48e-92 | 306 |
MS.gene62515.t1 | AT3G20520 | 42.727 | 110 | 59 | 1 | 1 | 110 | 1 | 106 | 4.44e-20 | 95.9 |
MS.gene62515.t1 | AT3G19440 | 41.016 | 256 | 142 | 3 | 548 | 803 | 225 | 471 | 1.99e-54 | 196 |
MS.gene62515.t1 | AT3G19440 | 36.607 | 112 | 70 | 1 | 548 | 659 | 225 | 335 | 8.14e-17 | 83.2 |
MS.gene62515.t1 | AT1G74210 | 24.033 | 362 | 214 | 11 | 173 | 489 | 47 | 392 | 4.34e-15 | 78.6 |
MS.gene62515.t1 | AT5G08030 | 23.006 | 326 | 195 | 11 | 177 | 456 | 51 | 366 | 9.61e-14 | 74.3 |
MS.gene62515.t1 | AT5G08030 | 23.077 | 325 | 194 | 11 | 177 | 455 | 66 | 380 | 1.21e-13 | 73.9 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCTTGGGCTGTGCGTTTC+CGG | 0.101392 | 7.3:+70380423 | None:intergenic |
GTGTATCTATGAGCAGATTT+AGG | 0.154954 | 7.3:+70381116 | None:intergenic |
AAATAAAACTATGAATTATT+TGG | 0.161651 | 7.3:-70383818 | MS.gene62515:CDS |
ACTATGAATTATTTGGTTAA+TGG | 0.169991 | 7.3:-70383811 | MS.gene62515:CDS |
TAGTGACTCTGCTTATATTT+TGG | 0.242787 | 7.3:-70383965 | MS.gene62515:CDS |
AATTCATGCTCCTCTTTCTA+AGG | 0.245255 | 7.3:-70378235 | MS.gene62515:intron |
GTCCCAGCGTTCTTAGCTTT+TGG | 0.248081 | 7.3:+70382174 | None:intergenic |
GGGGACTTGGTTCCGGCAGC+AGG | 0.249174 | 7.3:+70380448 | None:intergenic |
GGTGCTTCTCACATCAAAAT+TGG | 0.253340 | 7.3:-70379372 | MS.gene62515:CDS |
CCTTATACATTACAATCTTC+TGG | 0.273004 | 7.3:+70379309 | None:intergenic |
AAGCTACATATCAAAGATAT+TGG | 0.273192 | 7.3:-70378296 | MS.gene62515:CDS |
GGAGATCAACTCGTTTATTC+AGG | 0.277238 | 7.3:-70381171 | MS.gene62515:CDS |
AAAAGACTACCTGGTTTAAC+AGG | 0.298418 | 7.3:+70380589 | None:intergenic |
TGTATCTATGAGCAGATTTA+GGG | 0.308737 | 7.3:+70381117 | None:intergenic |
TTCTGAACATCTAGGCCTTC+TGG | 0.312188 | 7.3:+70377432 | None:intergenic |
CTGGTAGACAAGCTCGTATT+TGG | 0.319764 | 7.3:+70381422 | None:intergenic |
TGCGTTTCCGGGTGGGGACT+TGG | 0.323178 | 7.3:+70380435 | None:intergenic |
ACCTTGGGCTGTGCGTTTCC+GGG | 0.327002 | 7.3:+70380424 | None:intergenic |
TTGACGTGGAACGATATAAA+AGG | 0.338935 | 7.3:-70382606 | MS.gene62515:CDS |
TCCGGGTGGGGACTTGGTTC+CGG | 0.339707 | 7.3:+70380441 | None:intergenic |
TCTCAAAATACACATTGTTC+AGG | 0.340050 | 7.3:-70382200 | MS.gene62515:CDS |
TTTCCCTGCAGCCTCAATAT+TGG | 0.348515 | 7.3:-70382229 | MS.gene62515:intron |
CAACTAATTCTCATATGATT+AGG | 0.349841 | 7.3:+70377249 | None:intergenic |
GTGCTTGGTCCAATGATAAA+TGG | 0.353645 | 7.3:-70377999 | MS.gene62515:CDS |
TGCAGGAGGTCGTGGGTGTT+TGG | 0.358121 | 7.3:+70383429 | None:intergenic |
GCACATCCAATGCCGCTCTA+TGG | 0.358321 | 7.3:-70383930 | MS.gene62515:CDS |
AGATATTGGGCATTGGTCAT+AGG | 0.361356 | 7.3:-70378282 | MS.gene62515:CDS |
GTGTATTATTACCCAAGTTT+AGG | 0.361783 | 7.3:+70380626 | None:intergenic |
ATAGTTGGTGACTATAAATA+TGG | 0.361811 | 7.3:-70377537 | MS.gene62515:CDS |
CCGGCAGCAGGGCTAGCAGC+TGG | 0.365647 | 7.3:+70380460 | None:intergenic |
ACCTTGATTATCTCAAAGTA+TGG | 0.371442 | 7.3:-70382855 | MS.gene62515:CDS |
TCTGGTCTCCGCAACTTGTA+TGG | 0.377905 | 7.3:+70377450 | None:intergenic |
AATTATGCCTTCCTTCTCCT+TGG | 0.379701 | 7.3:+70378254 | None:intergenic |
TTCAGGGTGCAGGAATTAAC+GGG | 0.381765 | 7.3:-70381154 | MS.gene62515:CDS |
GAGTTTGAAAGGTTGAGATC+TGG | 0.385464 | 7.3:+70383865 | None:intergenic |
TGAAGAAACTTAGCAACGTT+GGG | 0.390766 | 7.3:+70377351 | None:intergenic |
GGGCTGTGCGTTTCCGGGTG+GGG | 0.392874 | 7.3:+70380429 | None:intergenic |
CAGCAATGAGTTTGTATCTC+AGG | 0.397062 | 7.3:-70381222 | MS.gene62515:intron |
CATGAGCATCCATTTATCAT+TGG | 0.401375 | 7.3:+70377990 | None:intergenic |
GCGACAAAGCGAAGAATATC+AGG | 0.403985 | 7.3:+70377279 | None:intergenic |
GGAGGGAGTGGAGCCATAGC+TGG | 0.404849 | 7.3:+70380538 | None:intergenic |
GCATCTGCACTGCAGAGAAT+TGG | 0.416764 | 7.3:-70377379 | MS.gene62515:CDS |
GTTGATATCGAGCCAACAAC+TGG | 0.417668 | 7.3:-70377477 | MS.gene62515:CDS |
ATTATGCCTTCCTTCTCCTT+GGG | 0.421045 | 7.3:+70378255 | None:intergenic |
CCACGGCCAGATTTGATCTC+AGG | 0.423046 | 7.3:+70382645 | None:intergenic |
TGGGCTGTGCGTTTCCGGGT+GGG | 0.427276 | 7.3:+70380428 | None:intergenic |
CTCGCGCCATTTGTTTCCAT+CGG | 0.433389 | 7.3:+70377499 | None:intergenic |
CCATCCTTTGACAATTGAAC+AGG | 0.434235 | 7.3:+70382753 | None:intergenic |
CACCGACACCCTCGTCAATC+TGG | 0.436391 | 7.3:+70381403 | None:intergenic |
AGCAAGAATGCAGGAGGTCG+TGG | 0.438930 | 7.3:+70383421 | None:intergenic |
AGCTACATATCAAAGATATT+GGG | 0.443158 | 7.3:-70378295 | MS.gene62515:CDS |
CAGTAATACAGAGCTATTAG+TGG | 0.447884 | 7.3:+70381461 | None:intergenic |
ATTCAGGGTGCAGGAATTAA+CGG | 0.449952 | 7.3:-70381155 | MS.gene62515:CDS |
CCAGCTGCTAGCCCTGCTGC+CGG | 0.450939 | 7.3:-70380460 | MS.gene62515:CDS |
AGGAAACAAATGCCTAAACT+TGG | 0.454432 | 7.3:-70380638 | MS.gene62515:CDS |
TAAGCAGAGTCACTAGAATC+AGG | 0.457095 | 7.3:+70383973 | None:intergenic |
ATAAAGATTCAGTATTTCCT+AGG | 0.457469 | 7.3:-70381323 | MS.gene62515:CDS |
AACTCGTTTATTCAGGGTGC+AGG | 0.457925 | 7.3:-70381164 | MS.gene62515:CDS |
CAATGCAAAATCTTCTTGTA+AGG | 0.458133 | 7.3:-70378470 | MS.gene62515:intron |
GGTTTAACAGGTTGCATGTA+GGG | 0.458661 | 7.3:+70380601 | None:intergenic |
CTCTGTATTACTGAAGTTCA+AGG | 0.462984 | 7.3:-70381451 | MS.gene62515:CDS |
GCTGGAGCTATTTCAGCAAC+CGG | 0.469732 | 7.3:+70380478 | None:intergenic |
TCCAAGATACCTGATGCTTC+CGG | 0.470057 | 7.3:+70377943 | None:intergenic |
AACATCCACACCATCTTGTA+TGG | 0.470788 | 7.3:+70382785 | None:intergenic |
TTCCACAATGTTTGTTTGGG+TGG | 0.472351 | 7.3:+70381284 | None:intergenic |
TGATGCTTCCGGTAAGTTAG+TGG | 0.472426 | 7.3:+70377954 | None:intergenic |
AGAAGGAGCCTTGTCTAAGA+TGG | 0.476478 | 7.3:+70383397 | None:intergenic |
AGTGTCCCTGAGATCAAATC+TGG | 0.477767 | 7.3:-70382651 | MS.gene62515:CDS |
TGTTTGGGTGGTTGCAAAGC+CGG | 0.478963 | 7.3:+70381296 | None:intergenic |
GGCCTTGTTATATGCTAAGT+TGG | 0.479777 | 7.3:+70382806 | None:intergenic |
TGTTACTGAATAACCATTGA+AGG | 0.482703 | 7.3:+70378497 | None:intergenic |
GATATTGGGCATTGGTCATA+GGG | 0.482762 | 7.3:-70378281 | MS.gene62515:CDS |
AGCCTATCTTACAGAAAAGC+AGG | 0.485222 | 7.3:-70381568 | MS.gene62515:CDS |
GGTAGAGCCACCTTTGCCTC+CGG | 0.487014 | 7.3:-70380497 | MS.gene62515:CDS |
GTTGCAAAGCCGGCATTCCT+AGG | 0.488959 | 7.3:+70381306 | None:intergenic |
ATTGATGCTTTGAGCAAAGC+AGG | 0.489824 | 7.3:-70381522 | MS.gene62515:CDS |
ACCGTTATTGCCTCCAGCTA+TGG | 0.491500 | 7.3:-70380551 | MS.gene62515:CDS |
TCAGTATTTCCTAGGAATGC+CGG | 0.491999 | 7.3:-70381315 | MS.gene62515:CDS |
TCCATACTTTGAGATAATCA+AGG | 0.493201 | 7.3:+70382854 | None:intergenic |
TCTTTAGTCAAGGGAGGGAG+TGG | 0.495212 | 7.3:+70380526 | None:intergenic |
GCCATAGCTGGAGGCAATAA+CGG | 0.499138 | 7.3:+70380550 | None:intergenic |
AGCTGCGTCCACTAACTTAC+CGG | 0.500279 | 7.3:-70377962 | MS.gene62515:CDS |
GTAACTGAGTATCGGGTGCT+TGG | 0.500717 | 7.3:-70378014 | MS.gene62515:CDS |
CCTGTTCAATTGTCAAAGGA+TGG | 0.501563 | 7.3:-70382753 | MS.gene62515:CDS |
TAGAGCGGCATTGGATGTGC+TGG | 0.502236 | 7.3:+70383933 | None:intergenic |
ATAGTGTATCTCACCTTCAA+TGG | 0.503818 | 7.3:-70378510 | MS.gene62515:CDS |
CACTTCCCTTCTGAACATCT+AGG | 0.504193 | 7.3:+70377424 | None:intergenic |
ATACAGAGCTATTAGTGGAT+TGG | 0.504740 | 7.3:+70381466 | None:intergenic |
TGAGAAAGGGGCCAATATTG+AGG | 0.506432 | 7.3:+70382218 | None:intergenic |
TGTCAGGTGCTTATGAATGA+TGG | 0.508316 | 7.3:-70378095 | MS.gene62515:intron |
GTCCATTGCGCTGAAGCACT+TGG | 0.511808 | 7.3:-70377567 | MS.gene62515:CDS |
ATTACACCATAGAGCGGCAT+TGG | 0.511883 | 7.3:+70383924 | None:intergenic |
ACTATGCGGCCACAAAATGA+TGG | 0.511990 | 7.3:+70382927 | None:intergenic |
AAATGTTAGTAGAGTTTGAA+AGG | 0.513604 | 7.3:+70383854 | None:intergenic |
ACCCGGAAACGCACAGCCCA+AGG | 0.513905 | 7.3:-70380425 | MS.gene62515:intron |
AGAGGCTGTAACTGAGTATC+GGG | 0.514273 | 7.3:-70378021 | MS.gene62515:CDS |
TACCACTTCGTCTTTAGTCA+AGG | 0.517727 | 7.3:+70380516 | None:intergenic |
TATGCTAAGTTGGTACAAGC+TGG | 0.517901 | 7.3:+70382816 | None:intergenic |
TTGGGCTGTGCGTTTCCGGG+TGG | 0.520398 | 7.3:+70380427 | None:intergenic |
AGCGAAGAATATCAGGCTGC+AGG | 0.520637 | 7.3:+70377286 | None:intergenic |
CTGCAGTGCAGATGCAATTG+AGG | 0.521612 | 7.3:+70377387 | None:intergenic |
ACAAGGCTCCTTCTCTAGAC+AGG | 0.523399 | 7.3:-70383388 | MS.gene62515:intron |
TATATCCTCAGCAGCTGCAT+TGG | 0.525602 | 7.3:+70381374 | None:intergenic |
GATACTCAGTTACAGCCTCT+TGG | 0.526169 | 7.3:+70378024 | None:intergenic |
GCACAGCCGATGGAAACAAA+TGG | 0.530941 | 7.3:-70377505 | MS.gene62515:CDS |
ATGAAGAAACTTAGCAACGT+TGG | 0.531878 | 7.3:+70377350 | None:intergenic |
TTCCAAGTGCTTCAGCGCAA+TGG | 0.532011 | 7.3:+70377565 | None:intergenic |
ACTAACTTACCGGAAGCATC+AGG | 0.532058 | 7.3:-70377952 | MS.gene62515:intron |
AATTGACGAAAGATGCAGTT+GGG | 0.534847 | 7.3:-70383897 | MS.gene62515:CDS |
AGAGCGTAAACCTTAGAAAG+AGG | 0.535314 | 7.3:+70378225 | None:intergenic |
AAGAGGCTGTAACTGAGTAT+CGG | 0.535450 | 7.3:-70378022 | MS.gene62515:CDS |
CATTGGAGTTGAGGCAGAGT+CGG | 0.538775 | 7.3:-70379336 | MS.gene62515:CDS |
ATCAATCTAAGAGATCTGTA+TGG | 0.541742 | 7.3:-70384515 | MS.gene62515:CDS |
CAATGATAAATGGATGCTCA+TGG | 0.541945 | 7.3:-70377989 | MS.gene62515:CDS |
ATCCAAAAGCTAAGAACGCT+GGG | 0.544735 | 7.3:-70382176 | MS.gene62515:CDS |
AGGCGTCTTGATCTTTGTTG+AGG | 0.547963 | 7.3:-70382097 | MS.gene62515:intron |
AAGAAACAGAGAGAGTGAAA+CGG | 0.548275 | 7.3:+70384557 | None:intergenic |
ATCTCAAAGTATGGAGCAAG+TGG | 0.553378 | 7.3:-70382846 | MS.gene62515:CDS |
CATAGGGACTCCCAAGGAGA+AGG | 0.556238 | 7.3:-70378265 | MS.gene62515:CDS |
ACCACTTCGTCTTTAGTCAA+GGG | 0.557451 | 7.3:+70380517 | None:intergenic |
TGGTTTAACAGGTTGCATGT+AGG | 0.559436 | 7.3:+70380600 | None:intergenic |
CTAATCATATGAGAATTAGT+TGG | 0.559535 | 7.3:-70377248 | MS.gene62515:CDS |
TTGGTTTCTAGTGAAGACAT+TGG | 0.559937 | 7.3:-70379353 | MS.gene62515:CDS |
ATTTCAGCAACCGGAGGCAA+AGG | 0.561653 | 7.3:+70380487 | None:intergenic |
GGGACTTGGTTCCGGCAGCA+GGG | 0.563994 | 7.3:+70380449 | None:intergenic |
TAGTGAAGACATTGGAGTTG+AGG | 0.564856 | 7.3:-70379345 | MS.gene62515:CDS |
GAGATCAACTCGTTTATTCA+GGG | 0.565693 | 7.3:-70381170 | MS.gene62515:CDS |
GCCGGAACCAAGTCCCCACC+CGG | 0.567617 | 7.3:-70380442 | MS.gene62515:CDS |
GCACTTGGAACACCGATAGT+TGG | 0.568101 | 7.3:-70377552 | MS.gene62515:CDS |
AGTGAAACGGAGAGAGCGCG+TGG | 0.568312 | 7.3:+70384570 | None:intergenic |
ATATCAAAGATATTGGGCAT+TGG | 0.568549 | 7.3:-70378289 | MS.gene62515:CDS |
AATCCAAAAGCTAAGAACGC+TGG | 0.570071 | 7.3:-70382177 | MS.gene62515:CDS |
TATTTATAGTCACCAACTAT+CGG | 0.570347 | 7.3:+70377540 | None:intergenic |
TCAGGCTGCAGGCTAAGTGA+AGG | 0.573530 | 7.3:+70377297 | None:intergenic |
CCTGAGATCAAATCTGGCCG+TGG | 0.575011 | 7.3:-70382645 | MS.gene62515:CDS |
GGGAGTGGAGCCATAGCTGG+AGG | 0.575933 | 7.3:+70380541 | None:intergenic |
CACGGCCAGATTTGATCTCA+GGG | 0.585180 | 7.3:+70382646 | None:intergenic |
CTGTTCAATTGTCAAAGGAT+GGG | 0.585655 | 7.3:-70382752 | MS.gene62515:CDS |
GTCAGGTGCTTATGAATGAT+GGG | 0.586087 | 7.3:-70378094 | MS.gene62515:intron |
TACAAGTTGCGGAGACCAGA+AGG | 0.586829 | 7.3:-70377447 | MS.gene62515:CDS |
AGAAGGCCTAGATGTTCAGA+AGG | 0.587215 | 7.3:-70377430 | MS.gene62515:CDS |
CCACTGGTCATCTCACATTG+TGG | 0.589533 | 7.3:-70384012 | MS.gene62515:CDS |
TATAACAAGGCCATACAAGA+TGG | 0.590025 | 7.3:-70382795 | MS.gene62515:CDS |
TCTGTATGGAACACACTCAC+AGG | 0.590984 | 7.3:-70384501 | MS.gene62515:intron |
TAAGATGGAAGCAAGAATGC+AGG | 0.593876 | 7.3:+70383412 | None:intergenic |
TCTTGCTTCCATCTTAGACA+AGG | 0.593915 | 7.3:-70383405 | MS.gene62515:CDS |
CTGGAAAACCATACAAGTTG+CGG | 0.594783 | 7.3:-70377458 | MS.gene62515:CDS |
TGACTATAAATATGGCTGGT+TGG | 0.595275 | 7.3:-70377529 | MS.gene62515:CDS |
CAAGGCCATACAAGATGGTG+TGG | 0.598251 | 7.3:-70382790 | MS.gene62515:CDS |
GCAAGAATGCAGGAGGTCGT+GGG | 0.598938 | 7.3:+70383422 | None:intergenic |
CTGTCCTGTTCAATTGTCAA+AGG | 0.600320 | 7.3:-70382757 | MS.gene62515:CDS |
TCCCTTGACTAAAGACGAAG+TGG | 0.602020 | 7.3:-70380518 | MS.gene62515:CDS |
TGCTACCAATGCAGCTGCTG+AGG | 0.602072 | 7.3:-70381379 | MS.gene62515:CDS |
GGAAACAAATGCCTAAACTT+GGG | 0.602318 | 7.3:-70380637 | MS.gene62515:CDS |
ATCCCCTACCTGTCTAGAGA+AGG | 0.604680 | 7.3:+70383380 | None:intergenic |
CACTAGTCTCTCTGTCAAGA+CGG | 0.605395 | 7.3:+70378560 | None:intergenic |
GCTGGTTGGTGCACAGCCGA+TGG | 0.610531 | 7.3:-70377515 | MS.gene62515:CDS |
TCAGCAACCGGAGGCAAAGG+TGG | 0.610662 | 7.3:+70380490 | None:intergenic |
TTGGTGACTATAAATATGGC+TGG | 0.611844 | 7.3:-70377533 | MS.gene62515:CDS |
GGTGAGGCTCTATACTCGAA+TGG | 0.614770 | 7.3:+70378045 | None:intergenic |
CTTCGTCTTTAGTCAAGGGA+GGG | 0.616003 | 7.3:+70380521 | None:intergenic |
AAAGCAGGTTATGACAAACC+AGG | 0.618794 | 7.3:-70381507 | MS.gene62515:CDS |
ATTGGATGTGCTGGTTTGCG+CGG | 0.622307 | 7.3:+70383942 | None:intergenic |
TCAGTTACAGCCTCTTGGTG+AGG | 0.622652 | 7.3:+70378029 | None:intergenic |
CAGGCTGCAGGCTAAGTGAA+GGG | 0.625315 | 7.3:+70377298 | None:intergenic |
GAATGATGGGAAGACAGAGA+GGG | 0.628778 | 7.3:-70378081 | MS.gene62515:CDS |
ACTTCGTCTTTAGTCAAGGG+AGG | 0.630202 | 7.3:+70380520 | None:intergenic |
GCCTATCTTACAGAAAAGCA+GGG | 0.634940 | 7.3:-70381567 | MS.gene62515:CDS |
TTAACAGGTTGCATGTAGGG+AGG | 0.634977 | 7.3:+70380604 | None:intergenic |
GGGACTCCCAAGGAGAAGGA+AGG | 0.636146 | 7.3:-70378261 | MS.gene62515:CDS |
TACCAGATTGACGAGGGTGT+CGG | 0.637510 | 7.3:-70381405 | MS.gene62515:CDS |
GAAGGCCTAGATGTTCAGAA+GGG | 0.641222 | 7.3:-70377429 | MS.gene62515:CDS |
GAGTATAGAGCCTCACCAAG+AGG | 0.645986 | 7.3:-70378039 | MS.gene62515:CDS |
TGAATGATGGGAAGACAGAG+AGG | 0.649315 | 7.3:-70378082 | MS.gene62515:CDS |
GAAGAAACTTAGCAACGTTG+GGG | 0.650904 | 7.3:+70377352 | None:intergenic |
TTTCTTCTCAGATTCAACTG+TGG | 0.657126 | 7.3:-70381192 | MS.gene62515:CDS |
CAATTGACGAAAGATGCAGT+TGG | 0.658027 | 7.3:-70383898 | MS.gene62515:CDS |
TACATGCAACCTGTTAAACC+AGG | 0.658394 | 7.3:-70380598 | MS.gene62515:CDS |
TTGAAAGGTTGAGATCTGGA+AGG | 0.659984 | 7.3:+70383869 | None:intergenic |
ATTGGTCATAGGGACTCCCA+AGG | 0.667248 | 7.3:-70378271 | MS.gene62515:CDS |
AAGCAGGTTATGACAAACCA+GGG | 0.667924 | 7.3:-70381506 | MS.gene62515:CDS |
GAAGCTAGTTTGAGCAACTG+TGG | 0.669967 | 7.3:+70382689 | None:intergenic |
CAAAGCATCAATGACAACAT+CGG | 0.677035 | 7.3:+70381533 | None:intergenic |
AGTTGAACGAAAATATGCCA+CGG | 0.677502 | 7.3:+70382628 | None:intergenic |
GATGGAAGCAAGAATGCAGG+AGG | 0.686872 | 7.3:+70383415 | None:intergenic |
CAATGTGAGATGACCAGTGG+TGG | 0.695620 | 7.3:+70384015 | None:intergenic |
GCTTGTCTACCAGATTGACG+AGG | 0.696575 | 7.3:-70381412 | MS.gene62515:CDS |
CTTGTCTACCAGATTGACGA+GGG | 0.699339 | 7.3:-70381411 | MS.gene62515:CDS |
CGTCTTGACAGAGAGACTAG+TGG | 0.704190 | 7.3:-70378559 | MS.gene62515:CDS |
TAGTCTCTCTGTCAAGACGG+TGG | 0.705824 | 7.3:+70378563 | None:intergenic |
TACCAACTTAGCATATAACA+AGG | 0.705932 | 7.3:-70382808 | MS.gene62515:CDS |
GGAGCTATTTCAGCAACCGG+AGG | 0.710777 | 7.3:+70380481 | None:intergenic |
TTGCACATTACACCATAGAG+CGG | 0.719699 | 7.3:+70383918 | None:intergenic |
CAACAACGATGAACACTATG+CGG | 0.723294 | 7.3:+70382913 | None:intergenic |
TCAGGGTGCAGGAATTAACG+GGG | 0.732530 | 7.3:-70381153 | MS.gene62515:CDS |
CCACAATGTGAGATGACCAG+TGG | 0.782734 | 7.3:+70384012 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 70377221 | 70384601 | 70377221 | ID=MS.gene62515 |
chr7.3 | mRNA | 70377221 | 70384601 | 70377221 | ID=MS.gene62515.t1;Parent=MS.gene62515 |
chr7.3 | exon | 70384502 | 70384601 | 70384502 | ID=MS.gene62515.t1.exon1;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70384502 | 70384601 | 70384502 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70383800 | 70384042 | 70383800 | ID=MS.gene62515.t1.exon2;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70383800 | 70384042 | 70383800 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70383389 | 70383461 | 70383389 | ID=MS.gene62515.t1.exon3;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70383389 | 70383461 | 70383389 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70382598 | 70382968 | 70382598 | ID=MS.gene62515.t1.exon4;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70382598 | 70382968 | 70382598 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70382098 | 70382240 | 70382098 | ID=MS.gene62515.t1.exon5;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70382098 | 70382240 | 70382098 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70381290 | 70381595 | 70381290 | ID=MS.gene62515.t1.exon6;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70381290 | 70381595 | 70381290 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70381114 | 70381234 | 70381114 | ID=MS.gene62515.t1.exon7;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70381114 | 70381234 | 70381114 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70380426 | 70380658 | 70380426 | ID=MS.gene62515.t1.exon8;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70380426 | 70380658 | 70380426 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70379322 | 70379393 | 70379322 | ID=MS.gene62515.t1.exon9;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70379322 | 70379393 | 70379322 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70378471 | 70378587 | 70378471 | ID=MS.gene62515.t1.exon10;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70378471 | 70378587 | 70378471 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70378236 | 70378337 | 70378236 | ID=MS.gene62515.t1.exon11;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70378236 | 70378337 | 70378236 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70377953 | 70378111 | 70377953 | ID=MS.gene62515.t1.exon12;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70377953 | 70378111 | 70377953 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
chr7.3 | exon | 70377221 | 70377595 | 70377221 | ID=MS.gene62515.t1.exon13;Parent=MS.gene62515.t1 |
chr7.3 | CDS | 70377221 | 70377595 | 70377221 | ID=cds.MS.gene62515.t1;Parent=MS.gene62515.t1 |
Gene Sequence |
Protein sequence |