AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62709

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62709.t1 MTR_8g102150 93.038 316 9 1 1 303 1 316 0.0 603
MS.gene62709.t1 MTR_8g015220 69.401 317 71 4 1 303 1 305 2.70e-159 446
MS.gene62709.t1 MTR_8g015220 67.260 281 66 4 1 267 1 269 7.50e-135 383
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62709.t1 AT2G19800 73.186 317 71 2 1 303 1 317 1.69e-172 480
MS.gene62709.t1 AT4G26260 73.585 318 69 2 1 303 1 318 2.98e-169 472
MS.gene62709.t1 AT4G26260 76.846 298 54 2 21 303 20 317 8.14e-169 471
MS.gene62709.t1 AT5G56640 70.440 318 75 4 1 303 1 314 5.65e-159 446
MS.gene62709.t1 AT5G56640 77.091 275 49 2 43 303 10 284 1.25e-156 439
MS.gene62709.t1 AT1G14520 70.169 295 64 2 22 303 28 311 5.55e-153 431
MS.gene62709.t1 AT1G14520 70.169 295 64 2 22 303 28 311 5.55e-153 431
MS.gene62709.t1 AT1G14520 70.169 295 64 2 22 303 26 309 1.20e-152 429
MS.gene62709.t1 AT1G14520 70.035 287 62 2 22 295 28 303 7.43e-146 414

Find 58 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTCTGCTTCCTAAATT+TGG 0.129202 6.3:-7624570 MS.gene62709:CDS
TGGCCAAATGCATTGATTTC+TGG 0.174976 6.3:+7626065 None:intergenic
TGAGGTAATTCACCAAATTT+AGG 0.223539 6.3:+7624558 None:intergenic
ATGAAAATACTTACGGTAAA+AGG 0.253178 6.3:+7623878 None:intergenic
TCAATAAGTGATAGATAATA+TGG 0.271963 6.3:+7623548 None:intergenic
TAAGCAGGGGATTTGATATC+AGG 0.289677 6.3:+7624254 None:intergenic
TATCACCATCTAAGCTTTGC+AGG 0.311884 6.3:+7623420 None:intergenic
GAAGAAAGTGAAAGGCAAAA+AGG 0.312701 6.3:-7625906 MS.gene62709:CDS
ATGCATTTGGCCATTCCTTC+AGG 0.314587 6.3:-7626055 MS.gene62709:intron
ATCAATAAACTTGTTCTTGA+TGG 0.323325 6.3:-7626134 MS.gene62709:CDS
ATCAACTAGAACTTTGCTTT+TGG 0.334218 6.3:+7623586 None:intergenic
CTTGTTGAGCATGTGGAATT+TGG 0.336219 6.3:-7626291 MS.gene62709:intron
GTGCAGGTTGCTAAGGAAAA+TGG 0.342888 6.3:-7623945 MS.gene62709:intron
TGCTTACAAAATCATATGTT+TGG 0.350700 6.3:+7625850 None:intergenic
ATTTCCCTGCAAAGCTTAGA+TGG 0.358857 6.3:-7623425 MS.gene62709:CDS
GGCCAAATGCATTGATTTCT+GGG 0.364742 6.3:+7626066 None:intergenic
ATTTGTGGTTCATCCAAATC+AGG 0.380292 6.3:+7625632 None:intergenic
GTTCTTGCTGCAGTATTTCA+AGG 0.382351 6.3:-7624282 MS.gene62709:intron
ACAAAGCAGAAATGAGCATA+TGG 0.382675 6.3:-7625697 MS.gene62709:CDS
GGCTCCACTTTGCCAAATGC+TGG 0.389898 6.3:-7623924 MS.gene62709:CDS
AAGATTATCCTAATGAAGAT+TGG 0.408744 6.3:-7625574 MS.gene62709:CDS
GGATGAAAGTGATCCTGATT+TGG 0.408862 6.3:-7625645 MS.gene62709:CDS
ATTTGGTGAATTACCTCAAT+GGG 0.414194 6.3:-7624553 MS.gene62709:CDS
ATAATGAACAATCCAGCATT+TGG 0.417188 6.3:+7623912 None:intergenic
AAATGTAACCAATCTTCATT+AGG 0.423631 6.3:+7625566 None:intergenic
TGCAGCAAATGTTGAATTTG+TGG 0.449869 6.3:+7625617 None:intergenic
AAGGGGTTGAGGAATTCTAT+AGG 0.455597 6.3:-7625887 MS.gene62709:CDS
GCAGGAGACACATTTCCCTT+AGG 0.472594 6.3:-7624423 MS.gene62709:intron
AATAAACTTGTTCTTGATGG+TGG 0.477007 6.3:-7626131 MS.gene62709:CDS
TTCATCAAAAGCACAACCTA+AGG 0.482754 6.3:+7624407 None:intergenic
AATTTGGTGAATTACCTCAA+TGG 0.484943 6.3:-7624554 MS.gene62709:CDS
TGACCTTGCAGCTTTGCATA+AGG 0.490633 6.3:-7623796 MS.gene62709:intron
TGAATTGCTGAATGAGGTTG+TGG 0.499420 6.3:-7625666 MS.gene62709:CDS
TAATGCAGGTGAAGAAAATG+AGG 0.508772 6.3:-7625739 MS.gene62709:intron
TAGAAACATACTTAAATATG+TGG 0.519483 6.3:+7623718 None:intergenic
CATTTGACTGCTCTCATCCA+TGG 0.521886 6.3:-7625548 MS.gene62709:intron
TTCCAATGTGCAGGTTGCTA+AGG 0.525933 6.3:-7623952 MS.gene62709:intron
TTACCTCAATGGGCTGTTGT+TGG 0.532222 6.3:-7624543 MS.gene62709:intron
TTGGAATCAACCTGAAGGAA+TGG 0.541951 6.3:+7626045 None:intergenic
CAATCCAGCATTTGGCAAAG+TGG 0.546474 6.3:+7623920 None:intergenic
TTATCTATCACTTATTGAGA+AGG 0.553529 6.3:-7623543 MS.gene62709:intron
AAGCAGGGGATTTGATATCA+GGG 0.566312 6.3:+7624255 None:intergenic
CAAAGCAGAAATGAGCATAT+GGG 0.567692 6.3:-7625696 MS.gene62709:CDS
GGGATCTACAATGAAGGCTG+TGG 0.567727 6.3:-7624218 MS.gene62709:CDS
CTTGCAGCTTTGCATAAGGA+AGG 0.571779 6.3:-7623792 MS.gene62709:intron
AATACTTACGGTAAAAGGAA+TGG 0.576348 6.3:+7623883 None:intergenic
CCAAATGCATTGATTTCTGG+GGG 0.583200 6.3:+7626068 None:intergenic
ATTATGATGAAGAAAGTGAA+AGG 0.589249 6.3:-7625914 MS.gene62709:CDS
GCCAAATGCATTGATTTCTG+GGG 0.591853 6.3:+7626067 None:intergenic
ATCACCATCTAAGCTTTGCA+GGG 0.593458 6.3:+7623421 None:intergenic
TCATCAAAAGCACAACCTAA+GGG 0.600269 6.3:+7624408 None:intergenic
ATGTTGTGAATTGCTGAATG+AGG 0.601153 6.3:-7625672 MS.gene62709:CDS
GAACATACTTGTTGAGCATG+TGG 0.627994 6.3:-7626298 MS.gene62709:CDS
GCAGGTGAAGAAAATGAGGG+AGG 0.632785 6.3:-7625735 MS.gene62709:intron
TGACCAACAACAGCCCATTG+AGG 0.638571 6.3:+7624540 None:intergenic
AATGCAGGTGAAGAAAATGA+GGG 0.643767 6.3:-7625738 MS.gene62709:intron
TGAATCAAATGTACACCACA+AGG 0.662320 6.3:-7624388 MS.gene62709:intron
CAAATGCATTGATTTCTGGG+GGG 0.729015 6.3:+7626069 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATAAAACAATGAAA+TGG + chr6.3:7623705-7623724 None:intergenic 10.0%
!! ATATAATATAAATATTGAAG+AGG + chr6.3:7624210-7624229 None:intergenic 10.0%
!! TTAGTAATTATTATGTAATT+AGG + chr6.3:7626081-7626100 None:intergenic 10.0%
!!! AAACAATAATAAATTGTTTT+GGG - chr6.3:7624641-7624660 MS.gene62709:intron 10.0%
!!! CATTGTTTTATTTATTTTTT+TGG - chr6.3:7623708-7623727 MS.gene62709:intron 10.0%
!! AAAAAAGAAATTAATAGACA+TGG - chr6.3:7623762-7623781 MS.gene62709:CDS 15.0%
!! AAAAAGAAATTAATAGACAT+GGG - chr6.3:7623763-7623782 MS.gene62709:CDS 15.0%
!! AAATATTTATAATTACCTTG+TGG + chr6.3:7625352-7625371 None:intergenic 15.0%
!! AAGACAATAATAATAAAGAA+AGG + chr6.3:7625114-7625133 None:intergenic 15.0%
!! AGACAATAATAATAAAGAAA+GGG + chr6.3:7625113-7625132 None:intergenic 15.0%
!! ATTAATTAACATTTGCAAAT+TGG + chr6.3:7623967-7623986 None:intergenic 15.0%
!! GAGAGAATATTAAAAATATT+AGG - chr6.3:7624608-7624627 MS.gene62709:intron 15.0%
!!! CAAACAATAATAAATTGTTT+TGG - chr6.3:7624640-7624659 MS.gene62709:intron 15.0%
!! AAAAATTATTCGAATTTCCT+CGG + chr6.3:7625705-7625724 None:intergenic 20.0%
!! AAAGATCATTTACAATTTCA+AGG - chr6.3:7625051-7625070 MS.gene62709:intron 20.0%
!! ATAAAACAATGAAATGGAAT+TGG + chr6.3:7623699-7623718 None:intergenic 20.0%
!! ATGATATGAAAATAAGTGTA+AGG + chr6.3:7625217-7625236 None:intergenic 20.0%
!! CATAACAATGAAAATACTTA+CGG + chr6.3:7625854-7625873 None:intergenic 20.0%
!! TAGAAACATACTTAAATATG+TGG + chr6.3:7626007-7626026 None:intergenic 20.0%
!! TCAATAAGTGATAGATAATA+TGG + chr6.3:7626177-7626196 None:intergenic 20.0%
!! TGTATTAGATCATAAGTAAA+GGG + chr6.3:7625743-7625762 None:intergenic 20.0%
!! TTACACTATTACTTAATAAC+CGG - chr6.3:7624886-7624905 MS.gene62709:intron 20.0%
!!! ATAATAAATTGTTTTGGGAA+AGG - chr6.3:7624646-7624665 MS.gene62709:intron 20.0%
!!! TGAAATTGTAAATGATCTTT+TGG + chr6.3:7625051-7625070 None:intergenic 20.0%
! AAATGTAACCAATCTTCATT+AGG + chr6.3:7624159-7624178 None:intergenic 25.0%
! AAGATTATCCTAATGAAGAT+TGG - chr6.3:7624148-7624167 MS.gene62709:intron 25.0%
! AATTCAACATTTGAACTGAA+TGG - chr6.3:7625262-7625281 MS.gene62709:intron 25.0%
! ACATGATGATTATATGACTA+TGG - chr6.3:7625554-7625573 MS.gene62709:CDS 25.0%
! ATCACGTGATGAATTATTTA+TGG + chr6.3:7625585-7625604 None:intergenic 25.0%
! ATGAAAATACTTACGGTAAA+AGG + chr6.3:7625847-7625866 None:intergenic 25.0%
! ATTATGATGAAGAAAGTGAA+AGG - chr6.3:7623808-7623827 MS.gene62709:intron 25.0%
! CTGCTTATAACACTAAAAAT+GGG - chr6.3:7625484-7625503 MS.gene62709:intron 25.0%
! GTGTATTAGATCATAAGTAA+AGG + chr6.3:7625744-7625763 None:intergenic 25.0%
! TAACACCAATCTTTATGAAT+TGG - chr6.3:7626202-7626221 MS.gene62709:intron 25.0%
! TGAAATAGACACAAATTTGA+TGG + chr6.3:7623914-7623933 None:intergenic 25.0%
! TGCTTACAAAATCATATGTT+TGG + chr6.3:7623875-7623894 None:intergenic 25.0%
! TTATCTATCACTTATTGAGA+AGG - chr6.3:7626179-7626198 MS.gene62709:intron 25.0%
! TTGCAAATGTTAATTAATGC+AGG - chr6.3:7623969-7623988 MS.gene62709:intron 25.0%
! TTTGTCACAATTTAGACTAT+TGG + chr6.3:7625664-7625683 None:intergenic 25.0%
!! AAAAACCGAAAAAGATGTTT+TGG - chr6.3:7624682-7624701 MS.gene62709:intron 25.0%
!! AAAACCGAAAAAGATGTTTT+GGG - chr6.3:7624683-7624702 MS.gene62709:intron 25.0%
!! ACATTTGCAAATTGGAATTT+TGG + chr6.3:7623959-7623978 None:intergenic 25.0%
!! ATCAATAAACTTGTTCTTGA+TGG - chr6.3:7623588-7623607 MS.gene62709:CDS 25.0%
!! CACATTTTTATCATCAGATT+GGG + chr6.3:7623556-7623575 None:intergenic 25.0%
!! TTTTCCCAAAACATCTTTTT+CGG + chr6.3:7624690-7624709 None:intergenic 25.0%
!!! AAGATTTTGAGAATTTGAAG+TGG - chr6.3:7625979-7625998 MS.gene62709:intron 25.0%
!!! ATTTTTAGTGTTATAAGCAG+GGG + chr6.3:7625484-7625503 None:intergenic 25.0%
!!! CATTTTTAGTGTTATAAGCA+GGG + chr6.3:7625485-7625504 None:intergenic 25.0%
AAAAATGGGATCTACAATGA+AGG - chr6.3:7625498-7625517 MS.gene62709:intron 30.0%
AAAAGAATTTGGTACGTACA+GGG + chr6.3:7624954-7624973 None:intergenic 30.0%
AAGAAAGTGAAAGGCAAAAA+GGG - chr6.3:7623817-7623836 MS.gene62709:intron 30.0%
AATACTTACGGTAAAAGGAA+TGG + chr6.3:7625842-7625861 None:intergenic 30.0%
AATTAATAGACATGGGTGAT+TGG - chr6.3:7623770-7623789 MS.gene62709:CDS 30.0%
ACATAATTCGTAATTCGCTT+TGG + chr6.3:7625014-7625033 None:intergenic 30.0%
ATAACAAGCCACATTATTAC+AGG - chr6.3:7623528-7623547 MS.gene62709:intron 30.0%
ATAATGAACAATCCAGCATT+TGG + chr6.3:7625813-7625832 None:intergenic 30.0%
ATGGTTATTGACATATTTGC+AGG - chr6.3:7625281-7625300 MS.gene62709:intron 30.0%
ATTCTTCTGCTTCCTAAATT+TGG - chr6.3:7625152-7625171 MS.gene62709:intron 30.0%
CATGACCAATTCATAAAGAT+TGG + chr6.3:7626210-7626229 None:intergenic 30.0%
CCTGCTTATAACACTAAAAA+TGG - chr6.3:7625483-7625502 MS.gene62709:intron 30.0%
GTTTGTAGTGTTAATACTAC+CGG + chr6.3:7624908-7624927 None:intergenic 30.0%
TAACAAGCCACATTATTACA+GGG - chr6.3:7623529-7623548 MS.gene62709:intron 30.0%
TACGCCATATGAAAAGAATT+TGG + chr6.3:7624965-7624984 None:intergenic 30.0%
TACTACTAAACTTCATCGAA+AGG + chr6.3:7624836-7624855 None:intergenic 30.0%
TGAGGTAATTCACCAAATTT+AGG + chr6.3:7625167-7625186 None:intergenic 30.0%
TGTTAGACTACGTCAAATTA+TGG + chr6.3:7625089-7625108 None:intergenic 30.0%
! AATAAACTTGTTCTTGATGG+TGG - chr6.3:7623591-7623610 MS.gene62709:CDS 30.0%
! AATTTGGTGAATTACCTCAA+TGG - chr6.3:7625168-7625187 MS.gene62709:intron 30.0%
! AATTTTCTGTACAGAGAATG+AGG + chr6.3:7625887-7625906 None:intergenic 30.0%
! ATCAACTAGAACTTTGCTTT+TGG + chr6.3:7626139-7626158 None:intergenic 30.0%
! ATTTGGTGAATTACCTCAAT+GGG - chr6.3:7625169-7625188 MS.gene62709:intron 30.0%
! CGTACCAAATTCTTTTCATA+TGG - chr6.3:7624958-7624977 MS.gene62709:intron 30.0%
! GAAGAAACGAATGCAATTTT+AGG - chr6.3:7624526-7624545 MS.gene62709:intron 30.0%
! GAGGAAATTGCATATTTTCT+TGG + chr6.3:7624405-7624424 None:intergenic 30.0%
! GCACATTTTTATCATCAGAT+TGG + chr6.3:7623557-7623576 None:intergenic 30.0%
! TTGTAAATGATCTTTTGGTC+AGG + chr6.3:7625046-7625065 None:intergenic 30.0%
!! AATGTGGCTTGTTATATGAT+GGG + chr6.3:7623523-7623542 None:intergenic 30.0%
!! TAATGTGGCTTGTTATATGA+TGG + chr6.3:7623524-7623543 None:intergenic 30.0%
!! TATTGTCTTGTTTCAGATCT+TGG - chr6.3:7625125-7625144 MS.gene62709:intron 30.0%
!!! AGACTTTTTTTTCTCGATGA+AGG - chr6.3:7624586-7624605 MS.gene62709:intron 30.0%
!!! CCATTTTTAGTGTTATAAGC+AGG + chr6.3:7625486-7625505 None:intergenic 30.0%
!!! TCATTTTTTCACCGAATAGT+TGG - chr6.3:7625620-7625639 MS.gene62709:CDS 30.0%
AAAGAATTTGGTACGTACAG+GGG + chr6.3:7624953-7624972 None:intergenic 35.0%
AAGTCAGCTTACCATAGAAA+TGG - chr6.3:7624370-7624389 MS.gene62709:intron 35.0%
AATGCAGGTGAAGAAAATGA+GGG - chr6.3:7623984-7624003 MS.gene62709:intron 35.0%
ACAAAGCAGAAATGAGCATA+TGG - chr6.3:7624025-7624044 MS.gene62709:intron 35.0%
AGAAAGTGAAAGGCAAAAAG+GGG - chr6.3:7623818-7623837 MS.gene62709:intron 35.0%
AGATTCAGAGAGAAAGAAAC+AGG - chr6.3:7624497-7624516 MS.gene62709:intron 35.0%
ATGCAGAGGAAAACAATAAG+AGG + chr6.3:7626243-7626262 None:intergenic 35.0%
ATGTTGTGAATTGCTGAATG+AGG - chr6.3:7624050-7624069 MS.gene62709:intron 35.0%
ATTTGTGGTTCATCCAAATC+AGG + chr6.3:7624093-7624112 None:intergenic 35.0%
CAAAGCAGAAATGAGCATAT+GGG - chr6.3:7624026-7624045 MS.gene62709:intron 35.0%
CATGGGTGATTGGAATTATT+TGG - chr6.3:7623780-7623799 MS.gene62709:CDS 35.0%
CTGCAGCAAGAACAATATTT+AGG + chr6.3:7625433-7625452 None:intergenic 35.0%
CTTGATGTTGAAATCGAAAG+TGG + chr6.3:7624433-7624452 None:intergenic 35.0%
GAAAAGAATTTGGTACGTAC+AGG + chr6.3:7624955-7624974 None:intergenic 35.0%
GAAGAAAGTGAAAGGCAAAA+AGG - chr6.3:7623816-7623835 MS.gene62709:intron 35.0%
TAAACTTCATCGAAAGGTAG+CGG + chr6.3:7624830-7624849 None:intergenic 35.0%
TAATGCAGGTGAAGAAAATG+AGG - chr6.3:7623983-7624002 MS.gene62709:intron 35.0%
TCGAACCAATTCCAACTATT+CGG + chr6.3:7625634-7625653 None:intergenic 35.0%
TGAATCAAATGTACACCACA+AGG - chr6.3:7625334-7625353 MS.gene62709:intron 35.0%
TGCAGAGGAAAACAATAAGA+GGG + chr6.3:7626242-7626261 None:intergenic 35.0%
TGCAGCAAATGTTGAATTTG+TGG + chr6.3:7624108-7624127 None:intergenic 35.0%
TTTCACCGAATAGTTGGAAT+TGG - chr6.3:7625626-7625645 MS.gene62709:CDS 35.0%
! AGACAATGTGATGATGTCAT+GGG - chr6.3:7625530-7625549 MS.gene62709:intron 35.0%
! CTGCGAATTTTACAGGAATT+TGG + chr6.3:7624350-7624369 None:intergenic 35.0%
! TAGACAATGTGATGATGTCA+TGG - chr6.3:7625529-7625548 MS.gene62709:intron 35.0%
! TCATCAAAAGCACAACCTAA+GGG + chr6.3:7625317-7625336 None:intergenic 35.0%
! TTCATCAAAAGCACAACCTA+AGG + chr6.3:7625318-7625337 None:intergenic 35.0%
!!! GTAGTCTGAGAAGCATTTTT+TGG + chr6.3:7623627-7623646 None:intergenic 35.0%
!!! TGAGAAGCATTTTTTGGTTG+AGG + chr6.3:7623621-7623640 None:intergenic 35.0%
AAGCAGGGGATTTGATATCA+GGG + chr6.3:7625470-7625489 None:intergenic 40.0%
AAGGGGTTGAGGAATTCTAT+AGG - chr6.3:7623835-7623854 MS.gene62709:intron 40.0%
AGAACATAAGTGTCATGCAG+AGG + chr6.3:7626257-7626276 None:intergenic 40.0%
ATTGGGACCCTGTAATAATG+TGG + chr6.3:7623539-7623558 None:intergenic 40.0%
ATTTCCCTGCAAAGCTTAGA+TGG - chr6.3:7626297-7626316 MS.gene62709:CDS 40.0%
CTTGTTGAGCATGTGGAATT+TGG - chr6.3:7623431-7623450 MS.gene62709:intron 40.0%
GAAATCGAAAGTGGAAAACG+AGG + chr6.3:7624424-7624443 None:intergenic 40.0%
GAAGAGGTGATTATGTACCA+TGG + chr6.3:7624194-7624213 None:intergenic 40.0%
GGATGAAAGTGATCCTGATT+TGG - chr6.3:7624077-7624096 MS.gene62709:intron 40.0%
GGTGATTGGAATTATTTGGC+AGG - chr6.3:7623784-7623803 MS.gene62709:CDS 40.0%
GGTTCACTCTTCCATTTCTA+TGG + chr6.3:7624384-7624403 None:intergenic 40.0%
GTTCTTGCTGCAGTATTTCA+AGG - chr6.3:7625440-7625459 MS.gene62709:intron 40.0%
TAAGCAGGGGATTTGATATC+AGG + chr6.3:7625471-7625490 None:intergenic 40.0%
TACAGGAATTTGGACAAACC+CGG + chr6.3:7624340-7624359 None:intergenic 40.0%
TGAATTGCTGAATGAGGTTG+TGG - chr6.3:7624056-7624075 MS.gene62709:intron 40.0%
TGGAATTGGAATCAACCTGA+AGG + chr6.3:7623685-7623704 None:intergenic 40.0%
TTCTGTACAGAGAATGAGGT+AGG + chr6.3:7625883-7625902 None:intergenic 40.0%
TTGGAATCAACCTGAAGGAA+TGG + chr6.3:7623680-7623699 None:intergenic 40.0%
! CTGACTTCTGCGAATTTTAC+AGG + chr6.3:7624357-7624376 None:intergenic 40.0%
! GAACATACTTGTTGAGCATG+TGG - chr6.3:7623424-7623443 MS.gene62709:CDS 40.0%
! GACAATGTGATGATGTCATG+GGG - chr6.3:7625531-7625550 MS.gene62709:intron 40.0%
! TGCAAGGTCATCAAGGTTTT+CGG + chr6.3:7625916-7625935 None:intergenic 40.0%
! TTCACGGTACTTTTGTGAAC+CGG - chr6.3:7624318-7624337 MS.gene62709:intron 40.0%
!! CAAATGCATTGATTTCTGGG+GGG + chr6.3:7623656-7623675 None:intergenic 40.0%
!! CCAAATGCATTGATTTCTGG+GGG + chr6.3:7623657-7623676 None:intergenic 40.0%
!! GCCAAATGCATTGATTTCTG+GGG + chr6.3:7623658-7623677 None:intergenic 40.0%
!! GGCCAAATGCATTGATTTCT+GGG + chr6.3:7623659-7623678 None:intergenic 40.0%
!! TGGCCAAATGCATTGATTTC+TGG + chr6.3:7623660-7623679 None:intergenic 40.0%
!! TTCACAAAAGTACCGTGAAC+CGG + chr6.3:7624317-7624336 None:intergenic 40.0%
ATGCATTTGGCCATTCCTTC+AGG - chr6.3:7623667-7623686 MS.gene62709:intron 45.0%
CAATCCAGCATTTGGCAAAG+TGG + chr6.3:7625805-7625824 None:intergenic 45.0%
CATTTGACTGCTCTCATCCA+TGG - chr6.3:7624174-7624193 MS.gene62709:intron 45.0%
CCCCCAGAAATCAATGCATT+TGG - chr6.3:7623654-7623673 MS.gene62709:intron 45.0%
CTTCCTTATGCAAAGCTGCA+AGG + chr6.3:7625932-7625951 None:intergenic 45.0%
CTTGCAGCTTTGCATAAGGA+AGG - chr6.3:7625930-7625949 MS.gene62709:intron 45.0%
GAGAGAAAGAAACAGGAGAG+AGG - chr6.3:7624504-7624523 MS.gene62709:intron 45.0%
GGTAGCGAATTCTGTGACTA+TGG + chr6.3:7624261-7624280 None:intergenic 45.0%
GTGCAGGTTGCTAAGGAAAA+TGG - chr6.3:7625777-7625796 MS.gene62709:intron 45.0%
TCGTAATTCGCTTTGGTACG+CGG + chr6.3:7625007-7625026 None:intergenic 45.0%
TGAAAGGCAAAAAGGGGTTG+AGG - chr6.3:7623824-7623843 MS.gene62709:intron 45.0%
TGACCTTGCAGCTTTGCATA+AGG - chr6.3:7625926-7625945 MS.gene62709:intron 45.0%
TTCCAATGTGCAGGTTGCTA+AGG - chr6.3:7625770-7625789 MS.gene62709:intron 45.0%
TTCCTTAGCAACCTGCACAT+TGG + chr6.3:7625775-7625794 None:intergenic 45.0%
TTGTGATGTCTTAGCTTCCG+AGG - chr6.3:7625685-7625704 MS.gene62709:CDS 45.0%
! TCACGGTACTTTTGTGAACC+GGG - chr6.3:7624319-7624338 MS.gene62709:intron 45.0%
!! TTACCTCAATGGGCTGTTGT+TGG - chr6.3:7625179-7625198 MS.gene62709:intron 45.0%
!!! TTTTCAAAAAAATAAAATTA+CGG + chr6.3:7623741-7623760 None:intergenic 5.0%
ATTTCGCGGTTCGCTAGCAA+GGG + chr6.3:7624282-7624301 None:intergenic 50.0%
CACTGTGCATTCCAATGTGC+AGG - chr6.3:7625761-7625780 MS.gene62709:intron 50.0%
GCAAAGCTGCAAGGTCATCA+AGG + chr6.3:7625923-7625942 None:intergenic 50.0%
GCAGGAGACACATTTCCCTT+AGG - chr6.3:7625299-7625318 MS.gene62709:intron 50.0%
GCAGGTGAAGAAAATGAGGG+AGG - chr6.3:7623987-7624006 MS.gene62709:intron 50.0%
GGGATCTACAATGAAGGCTG+TGG - chr6.3:7625504-7625523 MS.gene62709:intron 50.0%
TATAGAGCTTCGGTACGCGT+CGG + chr6.3:7624930-7624949 None:intergenic 50.0%
TGACCAACAACAGCCCATTG+AGG + chr6.3:7625185-7625204 None:intergenic 50.0%
! CGTACAGGGGTATAGAGCTT+CGG + chr6.3:7624940-7624959 None:intergenic 50.0%
ATTCGCTTTGGTACGCGGTG+CGG + chr6.3:7625002-7625021 None:intergenic 55.0%
CATTTCGCGGTTCGCTAGCA+AGG + chr6.3:7624283-7624302 None:intergenic 55.0%
CTTGCTAGCGAACCGCGAAA+TGG - chr6.3:7624281-7624300 MS.gene62709:intron 55.0%
GCGAAATGGTTCGAGCGAAC+CGG - chr6.3:7624295-7624314 MS.gene62709:intron 55.0%
GGCTCCACTTTGCCAAATGC+TGG - chr6.3:7625798-7625817 MS.gene62709:intron 55.0%
GGTTCGCTCGAACCATTTCG+CGG + chr6.3:7624296-7624315 None:intergenic 55.0%
TTCGCTTTGGTACGCGGTGC+GGG + chr6.3:7625001-7625020 None:intergenic 60.0%
TTTGGTACGCGGTGCGGGTA+CGG + chr6.3:7624996-7625015 None:intergenic 60.0%
! GGTTCGAGCGAACCGGTTCA+CGG - chr6.3:7624302-7624321 MS.gene62709:intron 60.0%
GCGGTGCGGGTACGGATTCG+CGG + chr6.3:7624988-7625007 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 7623422 7626322 7623422 ID=MS.gene62709
chr6.3 mRNA 7623422 7626322 7623422 ID=MS.gene62709.t1;Parent=MS.gene62709
chr6.3 exon 7626292 7626322 7626292 ID=MS.gene62709.t1.exon1;Parent=MS.gene62709.t1
chr6.3 CDS 7626292 7626322 7626292 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7626056 7626194 7626056 ID=MS.gene62709.t1.exon2;Parent=MS.gene62709.t1
chr6.3 CDS 7626056 7626194 7626056 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7625857 7625938 7625857 ID=MS.gene62709.t1.exon3;Parent=MS.gene62709.t1
chr6.3 CDS 7625857 7625938 7625857 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7625549 7625753 7625549 ID=MS.gene62709.t1.exon4;Parent=MS.gene62709.t1
chr6.3 CDS 7625549 7625753 7625549 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7624544 7624603 7624544 ID=MS.gene62709.t1.exon5;Parent=MS.gene62709.t1
chr6.3 CDS 7624544 7624603 7624544 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7624389 7624441 7624389 ID=MS.gene62709.t1.exon6;Parent=MS.gene62709.t1
chr6.3 CDS 7624389 7624441 7624389 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7624208 7624291 7624208 ID=MS.gene62709.t1.exon7;Parent=MS.gene62709.t1
chr6.3 CDS 7624208 7624291 7624208 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7623892 7623961 7623892 ID=MS.gene62709.t1.exon8;Parent=MS.gene62709.t1
chr6.3 CDS 7623892 7623961 7623892 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7623729 7623807 7623729 ID=MS.gene62709.t1.exon9;Parent=MS.gene62709.t1
chr6.3 CDS 7623729 7623807 7623729 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7623544 7623625 7623544 ID=MS.gene62709.t1.exon10;Parent=MS.gene62709.t1
chr6.3 CDS 7623544 7623625 7623544 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
chr6.3 exon 7623422 7623448 7623422 ID=MS.gene62709.t1.exon11;Parent=MS.gene62709.t1
chr6.3 CDS 7623422 7623448 7623422 ID=cds.MS.gene62709.t1;Parent=MS.gene62709.t1
Gene Sequence

>MS.gene62709

ATGAACATACTTGTTGAGCATGTGGAATTTGGTAATGATTCTTTTTTGTTTTTGTTTTTGTTTATTTTATTGCTTCTAGTATAGCATTGCAAAAAAGTCCCATCATATAACAAGCCACATTATTACAGGGTCCCAATCTGATGATAAAAATGTGCATTCTGAAGACATCAATAAACTTGTTCTTGATGGTGGATTTCCTCAACCAAAAAATGCTTCTCAGACTACATTCTTCCCCCCAGAAATCAATGCATTTGGCCATTCCTTCAGGTTGATTCCAATTCCATTTCATTGTTTTATTTATTTTTTTGGTCTATAACCGTAATTTTATTTTTTTGAAAATAAAAAAGAAATTAATAGACATGGGTGATTGGAATTATTTGGCAGGAATTATGATGAAGAAAGTGAAAGGCAAAAAGGGGTTGAGGAATTCTATAGGTTGCAACACATCAACCAAACATATGATTTTGTAAGCAAAGTTTATGATTATTTCCATCAAATTTGTGTCTATTTCACATGAAAGAAATGTAATTATGACCAAAATTCCAATTTGCAAATGTTAATTAATGCAGGTGAAGAAAATGAGGGAGGAATACAAGAAATTAGACAAAGCAGAAATGAGCATATGGGAATGTTGTGAATTGCTGAATGAGGTTGTGGATGAAAGTGATCCTGATTTGGATGAACCACAAATTCAACATTTGCTGCAATCTGCTGAAGCTATTAGAAAAGATTATCCTAATGAAGATTGGTTACATTTGACTGCTCTCATCCATGGTACATAATCACCTCTTCAATATTTATATTATATTTTAATTCAACATTCAATCATATCATGACCATAGTCACAGAATTCGCTACCCTTGCTAGCGAACCGCGAAATGGTTCGAGCGAACCGGTTCACGGTACTTTTGTGAACCGGGTTTGTCCAAATTCCTGTAAAATTCGCAGAAGTCAGCTTACCATAGAAATGGAAGAGTGAACCAAGAAAATATGCAATTTCCTCGTTTTCCACTTTCGATTTCAACATCAAGACATGAGAGAAAGATAGTGAAGATGCAATTTTATGTTGTATGAAAGATTCAGAGAGAAAGAAACAGGAGAGAGGAAGAAACGAATGCAATTTTAGGTTAAGTGAGAGACTTTAATTTTTCTTTTTGAAAGAAGAGACTTTTTTTTCTCGATGAAGGAGAGAATATTAAAAATATTAGGTAGCTGAAACAAACAATAATAAATTGTTTTGGGAAAGGCTTCTTTCAAAACAAAAACCGAAAAAGATGTTTTGGGAAAAGCTATTATTTTAACAAAATGATCATACTCGTAATTATGTAAGTCTCAGATTTTGATTACGATGATATTACTACTATTTTAAGTCATGTTTTAAATTAAATTAGTACGTATTGTTAATCCGCTACCTTTCGATGAAGTTTAGTAGTAAAAAACACTTTCTAAAAATTTATTGATAGCTTACACTATTACTTAATAACCGGTAGTATTAACACTACAAACCGACGCGTACCGAAGCTCTATACCCCTGTACGTACCAAATTCTTTTCATATGGCGTACCGCGAATCCGTACCCGCACCGCGTACCAAAGCGAATTACGAATTATGTGACTATGATCCTGACCAAAAGATCATTTACAATTTCAAGGCATAATAATCAACCATAATTTGACGTAGTCTAACATCCCTTTCTTTATTATTATTGTCTTGTTTCAGATCTTGGAAAAATTCTTCTGCTTCCTAAATTTGGTGAATTACCTCAATGGGCTGTTGTTGGTCAGAAACTATTCCTTACACTTATTTTCATATCATTACTAGTTATTTGTATTGAACATTGAATTCAACATTTGAACTGAATGGTTATTGACATATTTGCAGGAGACACATTTCCCTTAGGTTGTGCTTTTGATGAATCAAATGTACACCACAAGGTAATTATAAATATTTTGTAAAATTATGACAATGAATGAGACAATTGTTTAATCTTAAGTAATCATTCAATTTACCTAAATATTGTTCTTGCTGCAGTATTTCAAGGAGAACCCTGATATCAAATCCCCTGCTTATAACACTAAAAATGGGATCTACAATGAAGGCTGTGGACTAGACAATGTGATGATGTCATGGGGACATGATGATTATATGACTATGGCGAGTCCATAAATAATTCATCACGTGATAGTAGTATTAAATTTTCATTTTTTCACCGAATAGTTGGAATTGGTTCGATCTTGATCCAATAGTCTAAATTGTGACAAATTTGTGATGTCTTAGCTTCCGAGGAAATTCGAATAATTTTTTCTATGATTCTACAACCCTTTACTTATGATCTAATACACTGTGCATTCCAATGTGCAGGTTGCTAAGGAAAATGGCTCCACTTTGCCAAATGCTGGATTGTTCATTATCAGATACCATTCCTTTTACCGTAAGTATTTTCATTGTTATGTGAAAACCTACCTCATTCTCTGTACAGAAAATTTAATTACCGAAAACCTTGATGACCTTGCAGCTTTGCATAAGGAAGGTGCATACACTCACTTGATGAATGAAGAAGATTTTGAGAATTTGAAGTGGCTCCACATATTTAAGTATGTTTCTATTTTAGTTTCTAACATTTTTTTTTATTCATTTGCTCACATCTTTTGCTTCTCCTAATTACATAATAATTACTAATGATGTAATTTTATACAGCAAATATGATCTCTACACCAAAAGCAAAGTTCTAGTTGATGTCGAAGCAGTTAAACCATATTATCTATCACTTATTGAGAAGGTAACACCAATCTTTATGAATTGGTCATGTTTTCTTTTCCCTCTTATTGTTTTCCTCTGCATGACACTTATGTTCTTTTGATCTTTGTTTTGAAGTATTTCCCTGCAAAGCTTAGATGGTGA
Protein sequence

>MS.gene62709.t1

MNILVEHVEFGSQSDDKNVHSEDINKLVLDGGFPQPKNASQTTFFPPEINAFGHSFRNYDEESERQKGVEEFYRLQHINQTYDFVKKMREEYKKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILLLPKFGELPQWAVVGDTFPLGCAFDESNVHHKYFKENPDIKSPAYNTKNGIYNEGCGLDNVAKENGSTLPNAGLFIIRYHSFYPLHKEGAYTHLMNEEDFENLKWLHIFNKYDLYTKSKVLVDVEAVKPYYLSLIEKYFPAKLRW