Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62845.t1 | XP_003608797.1 | 98.7 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 2.80E-175 | 624.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62845.t1 | Q8L7W5 | 76.1 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 8.3e-136 | 484.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62845.t1 | G7JK82 | 98.7 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 2.0e-175 | 624.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051838 | MS.gene62845 | -0.836313 | 1.01E-56 | -1.69E-46 |
| MS.gene060872 | MS.gene62845 | 0.866977 | 1.92E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62845 | MS.gene027563 | PPI |
| MS.gene68324 | MS.gene62845 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62845.t1 | MTR_4g102060 | 98.680 | 303 | 4 | 0 | 1 | 303 | 1 | 303 | 0.0 | 624 |
| MS.gene62845.t1 | MTR_7g074900 | 63.380 | 284 | 104 | 0 | 1 | 284 | 1 | 284 | 4.55e-143 | 405 |
| MS.gene62845.t1 | MTR_6g039970 | 41.667 | 276 | 150 | 4 | 22 | 296 | 6 | 271 | 1.04e-68 | 215 |
| MS.gene62845.t1 | MTR_8g063210 | 41.887 | 265 | 150 | 3 | 22 | 285 | 6 | 267 | 5.36e-67 | 211 |
| MS.gene62845.t1 | MTR_5g035190 | 43.651 | 252 | 138 | 3 | 33 | 283 | 17 | 265 | 1.62e-66 | 209 |
| MS.gene62845.t1 | MTR_5g035190 | 45.729 | 199 | 108 | 0 | 85 | 283 | 13 | 211 | 4.93e-63 | 198 |
| MS.gene62845.t1 | MTR_5g040320 | 31.788 | 151 | 94 | 4 | 129 | 274 | 101 | 247 | 1.44e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62845.t1 | AT4G12110 | 76.109 | 293 | 68 | 1 | 1 | 291 | 1 | 293 | 1.04e-175 | 488 |
| MS.gene62845.t1 | AT4G22756 | 74.247 | 299 | 73 | 2 | 1 | 295 | 1 | 299 | 1.11e-171 | 477 |
| MS.gene62845.t1 | AT4G22755 | 69.072 | 291 | 87 | 2 | 1 | 290 | 1 | 289 | 2.57e-156 | 438 |
| MS.gene62845.t1 | AT1G07420 | 42.642 | 265 | 144 | 4 | 19 | 282 | 3 | 260 | 6.32e-69 | 215 |
| MS.gene62845.t1 | AT2G29390 | 43.033 | 244 | 135 | 3 | 33 | 275 | 10 | 250 | 7.31e-66 | 207 |
| MS.gene62845.t1 | AT2G29390 | 41.473 | 258 | 147 | 3 | 19 | 275 | 3 | 257 | 9.06e-66 | 207 |
| MS.gene62845.t1 | AT1G07420 | 46.970 | 198 | 101 | 1 | 85 | 282 | 29 | 222 | 1.40e-64 | 203 |
| MS.gene62845.t1 | AT2G29390 | 45.550 | 191 | 104 | 0 | 85 | 275 | 26 | 216 | 9.65e-63 | 198 |
| MS.gene62845.t1 | AT2G29390 | 39.630 | 270 | 147 | 4 | 19 | 275 | 3 | 269 | 2.53e-62 | 199 |
| MS.gene62845.t1 | AT2G29390 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.23e-61 | 192 |
| MS.gene62845.t1 | AT2G29390 | 47.222 | 180 | 91 | 1 | 102 | 281 | 1 | 176 | 7.23e-61 | 192 |
| MS.gene62845.t1 | AT1G14290 | 29.224 | 219 | 142 | 6 | 64 | 274 | 30 | 243 | 7.37e-14 | 70.5 |
| MS.gene62845.t1 | AT1G14290 | 33.113 | 151 | 92 | 4 | 129 | 274 | 23 | 169 | 1.22e-12 | 65.9 |
Find 73 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGGCGGAGATCTTGATTT+TGG | 0.150585 | 8.4:-22909769 | MS.gene62845:CDS |
| ACATATTGTGATTACATCTA+TGG | 0.218915 | 8.4:-22907733 | MS.gene62845:CDS |
| ATAGATTTCTGCATAATAAA+TGG | 0.221052 | 8.4:-22909863 | MS.gene62845:CDS |
| TATTGTAGATGATTGGAATT+AGG | 0.278974 | 8.4:-22909974 | MS.gene62845:intron |
| CTTGGACCGGCTATGGTTCC+CGG | 0.282922 | 8.4:-22909732 | MS.gene62845:CDS |
| ATTTATTATGCAGAAATCTA+TGG | 0.288607 | 8.4:+22909865 | None:intergenic |
| TATAGCAATTAAGCATTTCA+TGG | 0.305557 | 8.4:+22910139 | None:intergenic |
| AAAATGTTCTTCCTTGTTGT+TGG | 0.321889 | 8.4:-22910105 | MS.gene62845:CDS |
| TGGAGGATTATACGAATTAC+TGG | 0.338989 | 8.4:-22909890 | MS.gene62845:CDS |
| TGCTCAGCGCCACCATAAAA+TGG | 0.348188 | 8.4:+22907814 | None:intergenic |
| TAGATTTCTGCATAATAAAT+GGG | 0.360869 | 8.4:-22909862 | MS.gene62845:CDS |
| CCGGTCACATGATTACATTT+TGG | 0.367851 | 8.4:-22909713 | MS.gene62845:CDS |
| GAAGAGAAAGTAATCGGATT+TGG | 0.370486 | 8.4:+22910287 | None:intergenic |
| TGTGATTGTGATTACCTTGA+TGG | 0.370973 | 8.4:+22910056 | None:intergenic |
| ATGGAGAGATAAACGAACTT+TGG | 0.389544 | 8.4:+22910158 | None:intergenic |
| TGCGGCGCCTTATGCACATT+GGG | 0.401426 | 8.4:-22909787 | MS.gene62845:CDS |
| CGAGGGAGAAGATGAGGAAG+AGG | 0.414192 | 8.4:+22910247 | None:intergenic |
| TGGAGAGATAAACGAACTTT+GGG | 0.417171 | 8.4:+22910159 | None:intergenic |
| TCTCGGCGTCGTGGAGAGAT+TGG | 0.432872 | 8.4:+22910367 | None:intergenic |
| CATGAATATCAAGCTCCAAT+TGG | 0.447424 | 8.4:-22909813 | MS.gene62845:CDS |
| TGGAAGATCATATAATGAAC+AGG | 0.447595 | 8.4:-22907350 | MS.gene62845:CDS |
| ATCTCCGCCCAATGTGCATA+AGG | 0.458453 | 8.4:+22909780 | None:intergenic |
| TAAGGCGCCGCAAATCCAAT+TGG | 0.460635 | 8.4:+22909798 | None:intergenic |
| ATGACAGAAGAGAAAGTAAT+CGG | 0.467469 | 8.4:+22910281 | None:intergenic |
| CACGATTACCATCATTATGT+TGG | 0.470556 | 8.4:-22907790 | MS.gene62845:CDS |
| TTGCGGCGCCTTATGCACAT+TGG | 0.470678 | 8.4:-22909788 | MS.gene62845:CDS |
| GTAGTTGAACCATAGGGTTT+CGG | 0.479091 | 8.4:+22910317 | None:intergenic |
| TCAAGCTCCAATTGGATTTG+CGG | 0.480625 | 8.4:-22909805 | MS.gene62845:CDS |
| CGTTTCTTATCCTTCCATCA+AGG | 0.481297 | 8.4:-22910070 | MS.gene62845:intron |
| CTGAAGGAAGATTCGACAAA+TGG | 0.482061 | 8.4:-22907385 | MS.gene62845:CDS |
| CCAAAATGTAATCATGTGAC+CGG | 0.492282 | 8.4:+22909713 | None:intergenic |
| GAACCATAGGGTTTCGGCGA+AGG | 0.497179 | 8.4:+22910323 | None:intergenic |
| GAGGAACGAGGGAGAAGATG+AGG | 0.498130 | 8.4:+22910241 | None:intergenic |
| TCACCTTCGCCGAAACCCTA+TGG | 0.501858 | 8.4:-22910326 | MS.gene62845:CDS |
| TCAGAAGAAGATACTTCAAA+AGG | 0.505907 | 8.4:-22907585 | MS.gene62845:intron |
| ATGTCAGGTATGACTTCCCC+TGG | 0.513299 | 8.4:-22907855 | MS.gene62845:intron |
| TAGATGATTGGAATTAGGAC+GGG | 0.513499 | 8.4:-22909969 | MS.gene62845:CDS |
| ACAAATGGTGCAGCGCGGAA+TGG | 0.520094 | 8.4:-22907370 | MS.gene62845:CDS |
| TAGCGGAGTAGTTGAACCAT+AGG | 0.521461 | 8.4:+22910310 | None:intergenic |
| ATGTGACCGGGAACCATAGC+CGG | 0.522094 | 8.4:+22909726 | None:intergenic |
| AAACTGATGCAAAATTGCTC+TGG | 0.537490 | 8.4:+22907758 | None:intergenic |
| GTAGATGATTGGAATTAGGA+CGG | 0.538786 | 8.4:-22909970 | MS.gene62845:intron |
| GATTACCATCATTATGTTGG+AGG | 0.541524 | 8.4:-22907787 | MS.gene62845:CDS |
| GCGTCGTGGAGAGATTGGTA+AGG | 0.542904 | 8.4:+22910372 | None:intergenic |
| ATTGCGACCGAGAGAGATCT+CGG | 0.545066 | 8.4:+22910350 | None:intergenic |
| CACGACGCCGAGATCTCTCT+CGG | 0.545396 | 8.4:-22910357 | MS.gene62845:CDS |
| GAGATAAACGAACTTTGGGC+TGG | 0.549681 | 8.4:+22910163 | None:intergenic |
| ACGGGGTTACCGTTACCGTC+TGG | 0.551559 | 8.4:-22909951 | MS.gene62845:CDS |
| TTTGTCCTCCAACATAATGA+TGG | 0.557552 | 8.4:+22907782 | None:intergenic |
| GTACCCGCTGTGTGTATCAA+TGG | 0.560522 | 8.4:+22909662 | None:intergenic |
| AAAGTAATCGGATTTGGTAG+CGG | 0.569740 | 8.4:+22910293 | None:intergenic |
| TGGATCTTGTACTCATCGAA+AGG | 0.573332 | 8.4:+22910183 | None:intergenic |
| AAACGAGTGGAAGAGGAACG+AGG | 0.585179 | 8.4:+22910229 | None:intergenic |
| GGCGCCTTATGCACATTGGG+CGG | 0.588545 | 8.4:-22909784 | MS.gene62845:CDS |
| AGCGGAGTAGTTGAACCATA+GGG | 0.591782 | 8.4:+22910311 | None:intergenic |
| GGATAAGAAACGAGTTGAAG+AGG | 0.594918 | 8.4:+22910081 | None:intergenic |
| GGATCTTGTACTCATCGAAA+GGG | 0.594949 | 8.4:+22910184 | None:intergenic |
| ATCTCAAATCCAGACGGTAA+CGG | 0.597339 | 8.4:+22909942 | None:intergenic |
| CAAAATGTAATCATGTGACC+GGG | 0.609874 | 8.4:+22909714 | None:intergenic |
| CGAGAGAGATCTCGGCGTCG+TGG | 0.610673 | 8.4:+22910358 | None:intergenic |
| CGTCGTGGAGAGATTGGTAA+GGG | 0.613592 | 8.4:+22910373 | None:intergenic |
| GTGTATCAATGGCTTCAACT+TGG | 0.614849 | 8.4:+22909673 | None:intergenic |
| AGATTTCTGCATAATAAATG+GGG | 0.616388 | 8.4:-22909861 | MS.gene62845:CDS |
| AGATGATTGGAATTAGGACG+GGG | 0.631542 | 8.4:-22909968 | MS.gene62845:CDS |
| AAGCCATTGATACACACAGC+GGG | 0.635131 | 8.4:-22909665 | MS.gene62845:intron |
| ATTGTGATTACCTTGATGGA+AGG | 0.636565 | 8.4:+22910060 | None:intergenic |
| ATAGCCGGTCCAAGAAAAGA+CGG | 0.640967 | 8.4:+22909741 | None:intergenic |
| AACGAGTGGAAGAGGAACGA+GGG | 0.641822 | 8.4:+22910230 | None:intergenic |
| GATAATATCTCAAATCCAGA+CGG | 0.645775 | 8.4:+22909936 | None:intergenic |
| GTTGAAGAGGACCAACAACA+AGG | 0.668088 | 8.4:+22910094 | None:intergenic |
| ATTCGACAAATGGTGCAGCG+CGG | 0.713447 | 8.4:-22907375 | MS.gene62845:CDS |
| TTACATCTATGGAACAGACA+AGG | 0.732719 | 8.4:-22907722 | MS.gene62845:intron |
| GAAGCCATTGATACACACAG+CGG | 0.790862 | 8.4:-22909666 | MS.gene62845:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATCAACAAAAAA+AGG | + | chr8.4:22908088-22908107 | None:intergenic | 10.0% |
| !! | ATAATAAGTTAAATATGAAA+TGG | - | chr8.4:22909040-22909059 | MS.gene62845:intron | 10.0% |
| !! | ATAATACACAAAAAAATCAA+AGG | + | chr8.4:22908233-22908252 | None:intergenic | 15.0% |
| !! | CATTTAAAGAAAATTTAAAC+GGG | + | chr8.4:22909099-22909118 | None:intergenic | 15.0% |
| !! | CCATTTAAAGAAAATTTAAA+CGG | + | chr8.4:22909100-22909119 | None:intergenic | 15.0% |
| !!! | ACAAAATATATTCCATTTTA+TGG | - | chr8.4:22909882-22909901 | MS.gene62845:CDS | 15.0% |
| !!! | ATAAAATGGAATATATTTTG+TGG | + | chr8.4:22909883-22909902 | None:intergenic | 15.0% |
| !!! | ATAGATTGTCTTATTATATT+TGG | - | chr8.4:22909554-22909573 | MS.gene62845:intron | 15.0% |
| !!! | ATTTAACTTATTATGAGAAA+AGG | + | chr8.4:22909034-22909053 | None:intergenic | 15.0% |
| !!! | TAAAATGGAATATATTTTGT+GGG | + | chr8.4:22909882-22909901 | None:intergenic | 15.0% |
| !!! | TTTAAAATAGTGATTATATC+TGG | - | chr8.4:22909624-22909643 | MS.gene62845:intron | 15.0% |
| !! | AAAAAAATCAAAGGAGTAAA+AGG | + | chr8.4:22908224-22908243 | None:intergenic | 20.0% |
| !! | AAAAATTTGAAGGACAATTT+AGG | - | chr8.4:22909174-22909193 | MS.gene62845:intron | 20.0% |
| !! | AAAATTTGAAGGACAATTTA+GGG | - | chr8.4:22909175-22909194 | MS.gene62845:intron | 20.0% |
| !! | AAACAAAAAAAATGCTAACT+TGG | - | chr8.4:22909063-22909082 | MS.gene62845:intron | 20.0% |
| !! | AAGACACAATAATCTAAATA+CGG | + | chr8.4:22909130-22909149 | None:intergenic | 20.0% |
| !! | AATTATAACCGTAACTAAAA+CGG | + | chr8.4:22907702-22907721 | None:intergenic | 20.0% |
| !! | ACTAAACAAAATGAAAAATG+TGG | + | chr8.4:22910240-22910259 | None:intergenic | 20.0% |
| !! | ATAGATTTCTGCATAATAAA+TGG | - | chr8.4:22907845-22907864 | MS.gene62845:CDS | 20.0% |
| !! | ATATAGTTGAATGTCAAAAA+TGG | - | chr8.4:22909412-22909431 | MS.gene62845:intron | 20.0% |
| !! | ATATCTATCTAATGAAAAAG+AGG | + | chr8.4:22909757-22909776 | None:intergenic | 20.0% |
| !! | ATTTATTATGCAGAAATCTA+TGG | + | chr8.4:22907846-22907865 | None:intergenic | 20.0% |
| !! | CAATTGAATGTAAAAATTGT+AGG | - | chr8.4:22909498-22909517 | MS.gene62845:intron | 20.0% |
| !! | GAATATTAGGTAAAAGATAA+AGG | + | chr8.4:22908953-22908972 | None:intergenic | 20.0% |
| !! | GATTATTAGGAAAAAGATAA+AGG | - | chr8.4:22909336-22909355 | MS.gene62845:intron | 20.0% |
| !! | GTTGAAGAAAAAAAATTTGA+AGG | - | chr8.4:22909164-22909183 | MS.gene62845:intron | 20.0% |
| !! | GTTTCTTAGTAAGATTATTA+GGG | - | chr8.4:22908289-22908308 | MS.gene62845:intron | 20.0% |
| !! | TAGATTTCTGCATAATAAAT+GGG | - | chr8.4:22907846-22907865 | MS.gene62845:CDS | 20.0% |
| !! | TATCTATCTAATGAAAAAGA+GGG | + | chr8.4:22909756-22909775 | None:intergenic | 20.0% |
| !! | TGTTTCTTAGTAAGATTATT+AGG | - | chr8.4:22908288-22908307 | MS.gene62845:intron | 20.0% |
| !!! | AAATATATTCCATTTTATGG+TGG | - | chr8.4:22909885-22909904 | MS.gene62845:CDS | 20.0% |
| !!! | ATTATTAGTGTATTTTTTGG+TGG | - | chr8.4:22907798-22907817 | MS.gene62845:CDS | 20.0% |
| !!! | CCGTTTAAATTTTCTTTAAA+TGG | - | chr8.4:22909097-22909116 | MS.gene62845:intron | 20.0% |
| !!! | CTTTTACCTAATATTCATTT+CGG | - | chr8.4:22908957-22908976 | MS.gene62845:intron | 20.0% |
| !!! | CTTTTTCCTAATAATCATTT+TGG | + | chr8.4:22909332-22909351 | None:intergenic | 20.0% |
| !!! | GCAATTATTAGTGTATTTTT+TGG | - | chr8.4:22907795-22907814 | MS.gene62845:CDS | 20.0% |
| !!! | TTAAATTACCGTTTTAGTTA+CGG | - | chr8.4:22907691-22907710 | MS.gene62845:intron | 20.0% |
| !!! | TTTTGTTTATTGTAGATGAT+TGG | - | chr8.4:22907727-22907746 | MS.gene62845:CDS | 20.0% |
| ! | AAAATAGTGATTATATCTGG+TGG | - | chr8.4:22909627-22909646 | MS.gene62845:intron | 25.0% |
| ! | AAAGGACCAAAATGATTATT+AGG | - | chr8.4:22909323-22909342 | MS.gene62845:intron | 25.0% |
| ! | AACAAAATGAAAAATGTGGA+AGG | + | chr8.4:22910236-22910255 | None:intergenic | 25.0% |
| ! | AAGCAATCAAACATAAAAGT+TGG | + | chr8.4:22909823-22909842 | None:intergenic | 25.0% |
| ! | ACATATTGTGATTACATCTA+TGG | - | chr8.4:22909975-22909994 | MS.gene62845:intron | 25.0% |
| ! | AGATTTCTGCATAATAAATG+GGG | - | chr8.4:22907847-22907866 | MS.gene62845:CDS | 25.0% |
| ! | AGCAATCAAACATAAAAGTT+GGG | + | chr8.4:22909822-22909841 | None:intergenic | 25.0% |
| ! | AGTCCAATTAAAAATATTCC+TGG | - | chr8.4:22908693-22908712 | MS.gene62845:intron | 25.0% |
| ! | ATCTATCTAATGAAAAAGAG+GGG | + | chr8.4:22909755-22909774 | None:intergenic | 25.0% |
| ! | ATTACTTTATGCTGAAAGTT+CGG | - | chr8.4:22908542-22908561 | MS.gene62845:intron | 25.0% |
| ! | GATCAATTTCGAAAAGATAA+AGG | + | chr8.4:22909002-22909021 | None:intergenic | 25.0% |
| ! | TATAGCAATTAAGCATTTCA+TGG | + | chr8.4:22907572-22907591 | None:intergenic | 25.0% |
| ! | TATTGTAGATGATTGGAATT+AGG | - | chr8.4:22907734-22907753 | MS.gene62845:CDS | 25.0% |
| ! | TGTCTGTAGGATTTAATATT+CGG | - | chr8.4:22909698-22909717 | MS.gene62845:CDS | 25.0% |
| ! | TTAAGACCGAAATGAATATT+AGG | + | chr8.4:22908966-22908985 | None:intergenic | 25.0% |
| !! | TAGAAACTTTTTACAAGCTT+TGG | - | chr8.4:22908807-22908826 | MS.gene62845:intron | 25.0% |
| !!! | AAAAAATGTTGACTTAGCAA+TGG | + | chr8.4:22909252-22909271 | None:intergenic | 25.0% |
| !!! | ACATTAAGTGTTCTAAAAAG+AGG | + | chr8.4:22908643-22908662 | None:intergenic | 25.0% |
| !!! | TGTCCAGGAATATTTTTAAT+TGG | + | chr8.4:22908699-22908718 | None:intergenic | 25.0% |
| AAAAGGAAAATGACAGAAAG+TGG | + | chr8.4:22908071-22908090 | None:intergenic | 30.0% | |
| AAGAAACCTGTTTATGATCT+TGG | - | chr8.4:22908573-22908592 | MS.gene62845:intron | 30.0% | |
| ACTACAGCATAAACTTTCAA+AGG | + | chr8.4:22908724-22908743 | None:intergenic | 30.0% | |
| AGAAACCTGTTTATGATCTT+GGG | - | chr8.4:22908574-22908593 | MS.gene62845:intron | 30.0% | |
| ATCATGCTGATGTTTATCAA+TGG | + | chr8.4:22909727-22909746 | None:intergenic | 30.0% | |
| ATGACAGAAGAGAAAGTAAT+CGG | + | chr8.4:22907430-22907449 | None:intergenic | 30.0% | |
| ATTACGTCCAATTGTTTGAA+TGG | + | chr8.4:22908519-22908538 | None:intergenic | 30.0% | |
| CAGCTAAATCAATTCACAAA+AGG | + | chr8.4:22910306-22910325 | None:intergenic | 30.0% | |
| GATAATATCTCAAATCCAGA+CGG | + | chr8.4:22907775-22907794 | None:intergenic | 30.0% | |
| TAACTGTAGAAGCGAATTAA+AGG | + | chr8.4:22909452-22909471 | None:intergenic | 30.0% | |
| TACTCACTTGGAAAAGATAA+AGG | - | chr8.4:22909305-22909324 | MS.gene62845:intron | 30.0% | |
| TAGAAGCGAATTAAAGGAAT+TGG | + | chr8.4:22909446-22909465 | None:intergenic | 30.0% | |
| TATGTGAATATGAAGTGAGA+TGG | + | chr8.4:22908884-22908903 | None:intergenic | 30.0% | |
| TCAGAAGAAGATACTTCAAA+AGG | - | chr8.4:22910123-22910142 | MS.gene62845:CDS | 30.0% | |
| TCATAAACAGGTTTCTTCTA+AGG | + | chr8.4:22908570-22908589 | None:intergenic | 30.0% | |
| TCTATCTAATGAAAAAGAGG+GGG | + | chr8.4:22909754-22909773 | None:intergenic | 30.0% | |
| TGCTTTACTTATCATATGTC+AGG | - | chr8.4:22909838-22909857 | MS.gene62845:CDS | 30.0% | |
| TGGAAGATCATATAATGAAC+AGG | - | chr8.4:22910358-22910377 | MS.gene62845:CDS | 30.0% | |
| TTAAATCCTACAGACAAGAT+TGG | + | chr8.4:22909694-22909713 | None:intergenic | 30.0% | |
| TTACGTCCAATTGTTTGAAT+GGG | + | chr8.4:22908518-22908537 | None:intergenic | 30.0% | |
| TTCCAAAAGGACATTCATTA+CGG | + | chr8.4:22908119-22908138 | None:intergenic | 30.0% | |
| TTGATTTCAAGAAAAACGAG+TGG | + | chr8.4:22907495-22907514 | None:intergenic | 30.0% | |
| TTGCAAATCAATTTCACATG+TGG | + | chr8.4:22910067-22910086 | None:intergenic | 30.0% | |
| ! | AAAATGTTCTTCCTTGTTGT+TGG | - | chr8.4:22907603-22907622 | MS.gene62845:intron | 30.0% |
| ! | AATATATTTTGTGGGATTCC+AGG | + | chr8.4:22909874-22909893 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGGGATTCCA+GGG | + | chr8.4:22909873-22909892 | None:intergenic | 30.0% |
| ! | TGGAAACAGAATTTTGTTGA+AGG | - | chr8.4:22908614-22908633 | MS.gene62845:intron | 30.0% |
| ! | TTGTGAATTGATTTAGCTGA+AGG | - | chr8.4:22910307-22910326 | MS.gene62845:CDS | 30.0% |
| !! | TTTGCTTTGTTTATGTCACA+GGG | - | chr8.4:22910091-22910110 | MS.gene62845:CDS | 30.0% |
| !!! | ACATGATTACATTTTGGTTG+TGG | - | chr8.4:22908001-22908020 | MS.gene62845:intron | 30.0% |
| !!! | ATTAGTGTATTTTTTGGTGG+AGG | - | chr8.4:22907801-22907820 | MS.gene62845:CDS | 30.0% |
| !!! | TTTTGCTTTGTTTATGTCAC+AGG | - | chr8.4:22910090-22910109 | MS.gene62845:CDS | 30.0% |
| AAACCTGTTTATGATCTTGG+GGG | - | chr8.4:22908576-22908595 | MS.gene62845:intron | 35.0% | |
| AAACTGATGCAAAATTGCTC+TGG | + | chr8.4:22909953-22909972 | None:intergenic | 35.0% | |
| AAACTTTCAAAGGTTTGTCC+AGG | + | chr8.4:22908714-22908733 | None:intergenic | 35.0% | |
| AAAGGACATTCATTACGGTT+TGG | + | chr8.4:22908114-22908133 | None:intergenic | 35.0% | |
| AAGCTAATTAAAGCCACAAC+AGG | + | chr8.4:22910187-22910206 | None:intergenic | 35.0% | |
| ACCGACAATAATTCTGCATT+TGG | + | chr8.4:22908492-22908511 | None:intergenic | 35.0% | |
| AGGACAAAAGTTTACTCACT+TGG | - | chr8.4:22909293-22909312 | MS.gene62845:intron | 35.0% | |
| AGTTCATATGCTGTGAGAAA+AGG | - | chr8.4:22909273-22909292 | MS.gene62845:intron | 35.0% | |
| ATCTCAAGGATCTGTAATAG+TGG | - | chr8.4:22908149-22908168 | MS.gene62845:intron | 35.0% | |
| ATGGAGAGATAAACGAACTT+TGG | + | chr8.4:22907553-22907572 | None:intergenic | 35.0% | |
| ATTGTGATTACCTTGATGGA+AGG | + | chr8.4:22907651-22907670 | None:intergenic | 35.0% | |
| CAAAATGTAATCATGTGACC+GGG | + | chr8.4:22907997-22908016 | None:intergenic | 35.0% | |
| CACGATTACCATCATTATGT+TGG | - | chr8.4:22909918-22909937 | MS.gene62845:CDS | 35.0% | |
| CATGAATATCAAGCTCCAAT+TGG | - | chr8.4:22907895-22907914 | MS.gene62845:intron | 35.0% | |
| CCAAAATGTAATCATGTGAC+CGG | + | chr8.4:22907998-22908017 | None:intergenic | 35.0% | |
| CCAAATTTCAATGCAGAAAC+TGG | + | chr8.4:22909797-22909816 | None:intergenic | 35.0% | |
| CCAGTTTCTGCATTGAAATT+TGG | - | chr8.4:22909794-22909813 | MS.gene62845:CDS | 35.0% | |
| GAAACCTGTTTATGATCTTG+GGG | - | chr8.4:22908575-22908594 | MS.gene62845:intron | 35.0% | |
| GAAGAGAAAGTAATCGGATT+TGG | + | chr8.4:22907424-22907443 | None:intergenic | 35.0% | |
| GACTTAGCAATGGTTGTATA+AGG | + | chr8.4:22909242-22909261 | None:intergenic | 35.0% | |
| GATTACCATCATTATGTTGG+AGG | - | chr8.4:22909921-22909940 | MS.gene62845:CDS | 35.0% | |
| GCCAAATGCAGAATTATTGT+CGG | - | chr8.4:22908488-22908507 | MS.gene62845:intron | 35.0% | |
| GTAGATGATTGGAATTAGGA+CGG | - | chr8.4:22907738-22907757 | MS.gene62845:CDS | 35.0% | |
| TAATTGCCAATCTTGTCTGT+AGG | - | chr8.4:22909685-22909704 | MS.gene62845:CDS | 35.0% | |
| TACAAGCAAGGTTGTTAAAG+TGG | + | chr8.4:22908368-22908387 | None:intergenic | 35.0% | |
| TACACACACACTTACACATA+TGG | - | chr8.4:22908910-22908929 | MS.gene62845:intron | 35.0% | |
| TAGATGATTGGAATTAGGAC+GGG | - | chr8.4:22907739-22907758 | MS.gene62845:CDS | 35.0% | |
| TCACAAAAGGACAATGAAGT+GGG | + | chr8.4:22910293-22910312 | None:intergenic | 35.0% | |
| TCTCAAGGATCTGTAATAGT+GGG | - | chr8.4:22908150-22908169 | MS.gene62845:intron | 35.0% | |
| TGCATTTGGCTGTAAATTGA+TGG | + | chr8.4:22908478-22908497 | None:intergenic | 35.0% | |
| TGGAGAGATAAACGAACTTT+GGG | + | chr8.4:22907552-22907571 | None:intergenic | 35.0% | |
| TGGAGGATTATACGAATTAC+TGG | - | chr8.4:22907818-22907837 | MS.gene62845:CDS | 35.0% | |
| TGTGATTGTGATTACCTTGA+TGG | + | chr8.4:22907655-22907674 | None:intergenic | 35.0% | |
| TTAACAACCTTGCTTGTATG+AGG | - | chr8.4:22908370-22908389 | MS.gene62845:intron | 35.0% | |
| TTACATCTATGGAACAGACA+AGG | - | chr8.4:22909986-22910005 | MS.gene62845:intron | 35.0% | |
| TTAGCAATGGTTGTATAAGG+TGG | + | chr8.4:22909239-22909258 | None:intergenic | 35.0% | |
| TTCACAAAAGGACAATGAAG+TGG | + | chr8.4:22910294-22910313 | None:intergenic | 35.0% | |
| TTTGTCCTCCAACATAATGA+TGG | + | chr8.4:22909929-22909948 | None:intergenic | 35.0% | |
| ! | AAAGTAATCGGATTTGGTAG+CGG | + | chr8.4:22907418-22907437 | None:intergenic | 35.0% |
| ! | AACCGTAATGAATGTCCTTT+TGG | - | chr8.4:22908114-22908133 | MS.gene62845:intron | 35.0% |
| ! | GAAGGACAATTTAGGGATTT+TGG | - | chr8.4:22909182-22909201 | MS.gene62845:intron | 35.0% |
| ! | GATGCTTCAATTTTCTGACA+CGG | - | chr8.4:22908397-22908416 | MS.gene62845:intron | 35.0% |
| ! | TATATTTTGTGGGATTCCAG+GGG | + | chr8.4:22909872-22909891 | None:intergenic | 35.0% |
| ! | TGTTTATGTCACAGGGTTTT+CGG | - | chr8.4:22910098-22910117 | MS.gene62845:CDS | 35.0% |
| !! | TCAAATTCAAGTTGCAAGCA+CGG | + | chr8.4:22909663-22909682 | None:intergenic | 35.0% |
| !!! | GGGTTGCTTTTTGCTTTTAT+GGG | - | chr8.4:22908170-22908189 | MS.gene62845:intron | 35.0% |
| !!! | GGTTGCTTTTTGCTTTTATG+GGG | - | chr8.4:22908171-22908190 | MS.gene62845:intron | 35.0% |
| !!! | TGGGTTGCTTTTTGCTTTTA+TGG | - | chr8.4:22908169-22908188 | MS.gene62845:intron | 35.0% |
| AACCTGTTTATGATCTTGGG+GGG | - | chr8.4:22908577-22908596 | MS.gene62845:intron | 40.0% | |
| AGATGATTGGAATTAGGACG+GGG | - | chr8.4:22907740-22907759 | MS.gene62845:CDS | 40.0% | |
| AGCTGATACAGTTGCAATTG+CGG | - | chr8.4:22908323-22908342 | MS.gene62845:intron | 40.0% | |
| ATACAGTTGCAATTGCGGTT+GGG | - | chr8.4:22908328-22908347 | MS.gene62845:intron | 40.0% | |
| ATCACAACCTCATACAAGCA+AGG | + | chr8.4:22908380-22908399 | None:intergenic | 40.0% | |
| ATCTCAAATCCAGACGGTAA+CGG | + | chr8.4:22907769-22907788 | None:intergenic | 40.0% | |
| ATGCAGAAACTGGAGAAGAA+TGG | + | chr8.4:22909787-22909806 | None:intergenic | 40.0% | |
| CAATCCACCAGATATAAGCA+CGG | + | chr8.4:22909602-22909621 | None:intergenic | 40.0% | |
| CACAAAAGGACAATGAAGTG+GGG | + | chr8.4:22910292-22910311 | None:intergenic | 40.0% | |
| CACCAAGACGTAAATCTTTC+CGG | - | chr8.4:22908764-22908783 | MS.gene62845:intron | 40.0% | |
| CGTTTCTTATCCTTCCATCA+AGG | - | chr8.4:22907638-22907657 | MS.gene62845:intron | 40.0% | |
| CTGAAGGAAGATTCGACAAA+TGG | - | chr8.4:22910323-22910342 | MS.gene62845:CDS | 40.0% | |
| GGATCTTGTACTCATCGAAA+GGG | + | chr8.4:22907527-22907546 | None:intergenic | 40.0% | |
| GGTTCACCCATTCAAACAAT+TGG | - | chr8.4:22908509-22908528 | MS.gene62845:intron | 40.0% | |
| GTAGTTGAACCATAGGGTTT+CGG | + | chr8.4:22907394-22907413 | None:intergenic | 40.0% | |
| GTGTATCAATGGCTTCAACT+TGG | + | chr8.4:22908038-22908057 | None:intergenic | 40.0% | |
| TCAAGAAAAACGAGTGGAAG+AGG | + | chr8.4:22907489-22907508 | None:intergenic | 40.0% | |
| TCAAGCTCCAATTGGATTTG+CGG | - | chr8.4:22907903-22907922 | MS.gene62845:intron | 40.0% | |
| TGCAACTATAGATCTCACTC+AGG | + | chr8.4:22908197-22908216 | None:intergenic | 40.0% | |
| TGGATCTTGTACTCATCGAA+AGG | + | chr8.4:22907528-22907547 | None:intergenic | 40.0% | |
| TTATATCTGGTGGAATGTCC+AGG | - | chr8.4:22909637-22909656 | MS.gene62845:intron | 40.0% | |
| ! | AGGGATTTTGGATGACAGTT+GGG | - | chr8.4:22909194-22909213 | MS.gene62845:intron | 40.0% |
| ! | CCGGTCACATGATTACATTT+TGG | - | chr8.4:22907995-22908014 | MS.gene62845:intron | 40.0% |
| ! | GATCCAAAGCACTTTCCAAA+AGG | + | chr8.4:22908132-22908151 | None:intergenic | 40.0% |
| ! | GGATAAGAAACGAGTTGAAG+AGG | + | chr8.4:22907630-22907649 | None:intergenic | 40.0% |
| ! | TAGGGATTTTGGATGACAGT+TGG | - | chr8.4:22909193-22909212 | MS.gene62845:intron | 40.0% |
| !! | GTTAGTGATTAGTCTTGCTG+AGG | - | chr8.4:22909576-22909595 | MS.gene62845:intron | 40.0% |
| !! | TGGAAGGTGTTTGAGCAAAA+TGG | + | chr8.4:22910220-22910239 | None:intergenic | 40.0% |
| !!! | TGTCCTTTTGGAAAGTGCTT+TGG | - | chr8.4:22908126-22908145 | MS.gene62845:intron | 40.0% |
| AAGCCACAACAGGCAAATCA+CGG | + | chr8.4:22910177-22910196 | None:intergenic | 45.0% | |
| AAGCCATTGATACACACAGC+GGG | - | chr8.4:22908043-22908062 | MS.gene62845:intron | 45.0% | |
| ACCCTTGAGACAGAAAATGC+CGG | + | chr8.4:22908786-22908805 | None:intergenic | 45.0% | |
| ACCTGTTTATGATCTTGGGG+GGG | - | chr8.4:22908578-22908597 | MS.gene62845:intron | 45.0% | |
| AGCGGAGTAGTTGAACCATA+GGG | + | chr8.4:22907400-22907419 | None:intergenic | 45.0% | |
| ATAGCCGGTCCAAGAAAAGA+CGG | + | chr8.4:22907970-22907989 | None:intergenic | 45.0% | |
| GAAGCCATTGATACACACAG+CGG | - | chr8.4:22908042-22908061 | MS.gene62845:intron | 45.0% | |
| GAGATAAACGAACTTTGGGC+TGG | + | chr8.4:22907548-22907567 | None:intergenic | 45.0% | |
| GATACAGTTGCAATTGCGGT+TGG | - | chr8.4:22908327-22908346 | MS.gene62845:intron | 45.0% | |
| GTTGAAGAGGACCAACAACA+AGG | + | chr8.4:22907617-22907636 | None:intergenic | 45.0% | |
| TAGCGGAGTAGTTGAACCAT+AGG | + | chr8.4:22907401-22907420 | None:intergenic | 45.0% | |
| TGCCGGAAAGATTTACGTCT+TGG | + | chr8.4:22908769-22908788 | None:intergenic | 45.0% | |
| TTGGATGACAGTTGGGAGTT+GGG | - | chr8.4:22909201-22909220 | MS.gene62845:intron | 45.0% | |
| TTTGGATGACAGTTGGGAGT+TGG | - | chr8.4:22909200-22909219 | MS.gene62845:intron | 45.0% | |
| ! | GATTCCGTCTTTTCTTGGAC+CGG | - | chr8.4:22907963-22907982 | MS.gene62845:intron | 45.0% |
| ! | TCCGGCATTTTCTGTCTCAA+GGG | - | chr8.4:22908782-22908801 | MS.gene62845:intron | 45.0% |
| ! | TGGGCGGAGATCTTGATTTT+GGG | - | chr8.4:22907940-22907959 | MS.gene62845:intron | 45.0% |
| ! | TTCCGGCATTTTCTGTCTCA+AGG | - | chr8.4:22908781-22908800 | MS.gene62845:intron | 45.0% |
| ! | TTGGGCGGAGATCTTGATTT+TGG | - | chr8.4:22907939-22907958 | MS.gene62845:intron | 45.0% |
| ! | TTGGGGATTCCGTCTTTTCT+TGG | - | chr8.4:22907958-22907977 | MS.gene62845:intron | 45.0% |
| !! | GGAAAGTGCTTTGGATCTCA+AGG | - | chr8.4:22908135-22908154 | MS.gene62845:intron | 45.0% |
| AAACGAGTGGAAGAGGAACG+AGG | + | chr8.4:22907482-22907501 | None:intergenic | 50.0% | |
| AACGAGTGGAAGAGGAACGA+GGG | + | chr8.4:22907481-22907500 | None:intergenic | 50.0% | |
| ACCCCCCCAAGATCATAAAC+AGG | + | chr8.4:22908582-22908601 | None:intergenic | 50.0% | |
| ATCTCCGCCCAATGTGCATA+AGG | + | chr8.4:22907931-22907950 | None:intergenic | 50.0% | |
| ATGTCAGGTATGACTTCCCC+TGG | - | chr8.4:22909853-22909872 | MS.gene62845:CDS | 50.0% | |
| ATTCGACAAATGGTGCAGCG+CGG | - | chr8.4:22910333-22910352 | MS.gene62845:CDS | 50.0% | |
| ATTGCGACCGAGAGAGATCT+CGG | + | chr8.4:22907361-22907380 | None:intergenic | 50.0% | |
| CGTCGTGGAGAGATTGGTAA+GGG | + | chr8.4:22907338-22907357 | None:intergenic | 50.0% | |
| GTACCCGCTGTGTGTATCAA+TGG | + | chr8.4:22908049-22908068 | None:intergenic | 50.0% | |
| GTTTATGATCTTGGGGGGGT+GGG | - | chr8.4:22908582-22908601 | MS.gene62845:intron | 50.0% | |
| TGCTCAGCGCCACCATAAAA+TGG | + | chr8.4:22909897-22909916 | None:intergenic | 50.0% | |
| TGTTTATGATCTTGGGGGGG+TGG | - | chr8.4:22908581-22908600 | MS.gene62845:intron | 50.0% | |
| TTTATGATCTTGGGGGGGTG+GGG | - | chr8.4:22908583-22908602 | MS.gene62845:intron | 50.0% | |
| ! | GAACCGTGATTTGCCTGTTG+TGG | - | chr8.4:22910171-22910190 | MS.gene62845:CDS | 50.0% |
| ! | GGGCGGAGATCTTGATTTTG+GGG | - | chr8.4:22907941-22907960 | MS.gene62845:intron | 50.0% |
| ! | GTCTTTTCTTGGACCGGCTA+TGG | - | chr8.4:22907969-22907988 | MS.gene62845:intron | 50.0% |
| !! | TAAGGCGCCGCAAATCCAAT+TGG | + | chr8.4:22907913-22907932 | None:intergenic | 50.0% |
| ACAAATGGTGCAGCGCGGAA+TGG | - | chr8.4:22910338-22910357 | MS.gene62845:CDS | 55.0% | |
| ATGTGACCGGGAACCATAGC+CGG | + | chr8.4:22907985-22908004 | None:intergenic | 55.0% | |
| CGAGGGAGAAGATGAGGAAG+AGG | + | chr8.4:22907464-22907483 | None:intergenic | 55.0% | |
| GAACCATAGGGTTTCGGCGA+AGG | + | chr8.4:22907388-22907407 | None:intergenic | 55.0% | |
| GAGGAACGAGGGAGAAGATG+AGG | + | chr8.4:22907470-22907489 | None:intergenic | 55.0% | |
| GAGGCCGTGCTTATATCTGG+TGG | - | chr8.4:22909595-22909614 | MS.gene62845:intron | 55.0% | |
| GCGTCGTGGAGAGATTGGTA+AGG | + | chr8.4:22907339-22907358 | None:intergenic | 55.0% | |
| GCTGAGGCCGTGCTTATATC+TGG | - | chr8.4:22909592-22909611 | MS.gene62845:intron | 55.0% | |
| TCACCTTCGCCGAAACCCTA+TGG | - | chr8.4:22907382-22907401 | MS.gene62845:CDS | 55.0% | |
| TGCGGCGCCTTATGCACATT+GGG | - | chr8.4:22907921-22907940 | MS.gene62845:intron | 55.0% | |
| TTATGATCTTGGGGGGGTGG+GGG | - | chr8.4:22908584-22908603 | MS.gene62845:intron | 55.0% | |
| TTGCGGCGCCTTATGCACAT+TGG | - | chr8.4:22907920-22907939 | MS.gene62845:intron | 55.0% | |
| !! | TTCAAGTTGCAAGCACGGCC+TGG | + | chr8.4:22909658-22909677 | None:intergenic | 55.0% |
| ACGGGGTTACCGTTACCGTC+TGG | - | chr8.4:22907757-22907776 | MS.gene62845:CDS | 60.0% | |
| CACGACGCCGAGATCTCTCT+CGG | - | chr8.4:22907351-22907370 | MS.gene62845:CDS | 60.0% | |
| CTTGGACCGGCTATGGTTCC+CGG | - | chr8.4:22907976-22907995 | MS.gene62845:intron | 60.0% | |
| GGCGCCTTATGCACATTGGG+CGG | - | chr8.4:22907924-22907943 | MS.gene62845:intron | 60.0% | |
| TATGATCTTGGGGGGGTGGG+GGG | - | chr8.4:22908585-22908604 | MS.gene62845:intron | 60.0% | |
| TCTCGGCGTCGTGGAGAGAT+TGG | + | chr8.4:22907344-22907363 | None:intergenic | 60.0% | |
| CGAGAGAGATCTCGGCGTCG+TGG | + | chr8.4:22907353-22907372 | None:intergenic | 65.0% | |
| ! | GGGGGGGTGGGGGGCTCTGT+TGG | - | chr8.4:22908594-22908613 | MS.gene62845:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 22907330 | 22910400 | 22907330 | ID=MS.gene62845 |
| chr8.4 | mRNA | 22907330 | 22910400 | 22907330 | ID=MS.gene62845.t1;Parent=MS.gene62845 |
| chr8.4 | exon | 22910071 | 22910400 | 22910071 | ID=MS.gene62845.t1.exon1;Parent=MS.gene62845.t1 |
| chr8.4 | CDS | 22910071 | 22910400 | 22910071 | ID=cds.MS.gene62845.t1;Parent=MS.gene62845.t1 |
| chr8.4 | exon | 22909666 | 22909988 | 22909666 | ID=MS.gene62845.t1.exon2;Parent=MS.gene62845.t1 |
| chr8.4 | CDS | 22909666 | 22909988 | 22909666 | ID=cds.MS.gene62845.t1;Parent=MS.gene62845.t1 |
| chr8.4 | exon | 22907723 | 22907870 | 22907723 | ID=MS.gene62845.t1.exon3;Parent=MS.gene62845.t1 |
| chr8.4 | CDS | 22907723 | 22907870 | 22907723 | ID=cds.MS.gene62845.t1;Parent=MS.gene62845.t1 |
| chr8.4 | exon | 22907586 | 22907618 | 22907586 | ID=MS.gene62845.t1.exon4;Parent=MS.gene62845.t1 |
| chr8.4 | CDS | 22907586 | 22907618 | 22907586 | ID=cds.MS.gene62845.t1;Parent=MS.gene62845.t1 |
| chr8.4 | exon | 22907330 | 22907407 | 22907330 | ID=MS.gene62845.t1.exon5;Parent=MS.gene62845.t1 |
| chr8.4 | CDS | 22907330 | 22907407 | 22907330 | ID=cds.MS.gene62845.t1;Parent=MS.gene62845.t1 |
| Gene Sequence |
| Protein sequence |
