Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63347.t1 | XP_013460652.1 | 95 | 218 | 7 | 2 | 1 | 217 | 1 | 215 | 4.00E-107 | 397.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63347.t1 | Q6NLC8 | 47.9 | 217 | 94 | 6 | 1 | 206 | 1 | 209 | 5.0e-42 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63347.t1 | A0A072UZ14 | 95.0 | 218 | 7 | 2 | 1 | 217 | 1 | 215 | 2.9e-107 | 397.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63347 | MS.gene59144 | PPI |
| MS.gene63347 | MS.gene83133 | PPI |
| MS.gene63347 | MS.gene026608 | PPI |
| MS.gene63347 | MS.gene006970 | PPI |
| MS.gene63347 | MS.gene62991 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63347.t1 | MTR_3g067730 | 94.091 | 220 | 9 | 2 | 1 | 219 | 1 | 217 | 7.62e-150 | 415 |
| MS.gene63347.t1 | MTR_5g079610 | 60.987 | 223 | 68 | 6 | 1 | 218 | 1 | 209 | 4.39e-81 | 241 |
| MS.gene63347.t1 | MTR_1g030740 | 46.222 | 225 | 101 | 5 | 1 | 219 | 1 | 211 | 1.12e-55 | 176 |
| MS.gene63347.t1 | MTR_4g085100 | 44.298 | 228 | 100 | 7 | 1 | 219 | 1 | 210 | 8.16e-50 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63347.t1 | AT5G37840 | 48.815 | 211 | 95 | 7 | 1 | 206 | 1 | 203 | 2.80e-56 | 178 |
| MS.gene63347.t1 | AT1G66480 | 53.039 | 181 | 69 | 6 | 1 | 171 | 1 | 175 | 2.89e-54 | 173 |
| MS.gene63347.t1 | AT2G01340 | 50.568 | 176 | 72 | 7 | 1 | 174 | 1 | 163 | 2.87e-47 | 155 |
| MS.gene63347.t1 | AT1G71015 | 47.953 | 171 | 79 | 5 | 1 | 171 | 1 | 161 | 1.08e-39 | 135 |
| MS.gene63347.t1 | AT1G71015 | 47.953 | 171 | 79 | 5 | 1 | 171 | 1 | 161 | 1.08e-39 | 135 |
Find 68 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCCCGGTCATGCTCTTT+TGG | 0.180720 | 3.3:-59730132 | MS.gene63347:CDS |
| GAAGATTGTAAGTTTGTATA+TGG | 0.218805 | 3.3:-59729748 | MS.gene63347:CDS |
| GGCCAAGAAAATCTATTTCT+TGG | 0.236205 | 3.3:-59730045 | MS.gene63347:CDS |
| TCACAAGCAGTGAAGCATTT+TGG | 0.240768 | 3.3:-59730107 | MS.gene63347:CDS |
| AATGGTTGAGATTGAACTTT+TGG | 0.273954 | 3.3:+59730014 | None:intergenic |
| GGGCCCATCATCACCTATAT+TGG | 0.340286 | 3.3:+59729872 | None:intergenic |
| GCAAAGGTAATGAAAATAGA+TGG | 0.392442 | 3.3:-59730206 | MS.gene63347:CDS |
| GTTATCGAAACGTTCCGTTT+CGG | 0.396966 | 3.3:-59729916 | MS.gene63347:CDS |
| ACTACGTCATTTGCTTTAGC+TGG | 0.402674 | 3.3:+59730161 | None:intergenic |
| TGAATTTCTCCTTCTTCCAC+TGG | 0.404762 | 3.3:+59727489 | None:intergenic |
| AAGATTGTAAGTTTGTATAT+GGG | 0.412790 | 3.3:-59729747 | MS.gene63347:CDS |
| TTCCGTTTCGGATCTTCCTT+CGG | 0.426951 | 3.3:-59729904 | MS.gene63347:CDS |
| TGACCCATCACGAATTAAAC+CGG | 0.445887 | 3.3:+59729851 | None:intergenic |
| GGCTCAGTTGGATAGGTTGA+TGG | 0.448296 | 3.3:-59729802 | MS.gene63347:CDS |
| TCGCGATGGAGCCGAGGTGG+CGG | 0.453581 | 3.3:-59729772 | MS.gene63347:CDS |
| CGATCCAATATAGGTGATGA+TGG | 0.454916 | 3.3:-59729876 | MS.gene63347:CDS |
| CCACTGGATCGCACCCTCTT+CGG | 0.473786 | 3.3:+59729990 | None:intergenic |
| AACCTATCCAACTGAGCCTT+AGG | 0.477024 | 3.3:+59729807 | None:intergenic |
| AGAGATGGGAAACGTTATGA+TGG | 0.479796 | 3.3:-59730243 | None:intergenic |
| TGAATCCAAAAGAGCATGAC+CGG | 0.484308 | 3.3:+59730127 | None:intergenic |
| AGTTTCAGTCCAGTGGAAGA+AGG | 0.490701 | 3.3:-59727498 | MS.gene63347:CDS |
| GAGGATTCCTAAGGCTCAGT+TGG | 0.502372 | 3.3:-59729814 | MS.gene63347:CDS |
| ACGTGAAGGGTGTAATCCAC+TGG | 0.505273 | 3.3:+59729974 | None:intergenic |
| AGTTTGTATATGGGGAATGA+TGG | 0.510469 | 3.3:-59729738 | MS.gene63347:CDS |
| GATCGCACCCTCTTCGGCAA+TGG | 0.515740 | 3.3:+59729996 | None:intergenic |
| TGAACCTCACCAACAACTAA+AGG | 0.523764 | 3.3:-59730066 | MS.gene63347:CDS |
| TAATTCGTGATGGGTCAACT+CGG | 0.530636 | 3.3:-59729845 | MS.gene63347:CDS |
| AAATAGAGGTTCACAATCAA+AGG | 0.532449 | 3.3:-59729671 | MS.gene63347:CDS |
| GGCCCGGTTTAATTCGTGAT+GGG | 0.533844 | 3.3:-59729854 | MS.gene63347:CDS |
| GTTTGTATATGGGGAATGAT+GGG | 0.535332 | 3.3:-59729737 | MS.gene63347:CDS |
| ATCTCAACCATTGCCGAAGA+GGG | 0.536330 | 3.3:-59730003 | MS.gene63347:CDS |
| TCGGTGAAGCGATCCAATAT+AGG | 0.537324 | 3.3:-59729885 | MS.gene63347:CDS |
| GCTTCTGTGAAGGGTGGTGG+TGG | 0.538063 | 3.3:-59729708 | MS.gene63347:CDS |
| AATATAGGTGATGATGGGCC+CGG | 0.541049 | 3.3:-59729870 | MS.gene63347:CDS |
| GGGCCCGGTTTAATTCGTGA+TGG | 0.543179 | 3.3:-59729855 | MS.gene63347:CDS |
| TTGGCCTTTAGTTGTTGGTG+AGG | 0.543375 | 3.3:+59730062 | None:intergenic |
| AATGCTTCTGTGAAGGGTGG+TGG | 0.549716 | 3.3:-59729711 | MS.gene63347:CDS |
| TTCCTAAGGCTCAGTTGGAT+AGG | 0.549884 | 3.3:-59729809 | MS.gene63347:CDS |
| GGTCAACTCGGGTGAAAATG+AGG | 0.551532 | 3.3:-59729833 | MS.gene63347:CDS |
| CCGAAGAGGGTGCGATCCAG+TGG | 0.555597 | 3.3:-59729990 | MS.gene63347:CDS |
| AGTTGTTGGTGAGGTTCAAG+TGG | 0.562454 | 3.3:+59730071 | None:intergenic |
| AATTCGTGATGGGTCAACTC+GGG | 0.562866 | 3.3:-59729844 | MS.gene63347:CDS |
| CACCGAAGGAAGATCCGAAA+CGG | 0.564039 | 3.3:+59729902 | None:intergenic |
| AATAAATGAAGGCAAAATAG+AGG | 0.565866 | 3.3:-59729685 | MS.gene63347:CDS |
| GGGAATAATGCTTCTGTGAA+GGG | 0.567626 | 3.3:-59729717 | MS.gene63347:CDS |
| TAGCGTTCATGCCACGTGAA+GGG | 0.567892 | 3.3:+59729961 | None:intergenic |
| GGTGAAAATGAGGATTCCTA+AGG | 0.569823 | 3.3:-59729823 | MS.gene63347:CDS |
| AGATTGTAAGTTTGTATATG+GGG | 0.573949 | 3.3:-59729746 | MS.gene63347:CDS |
| GAGATGGGAAACGTTATGAT+GGG | 0.574353 | 3.3:-59730242 | MS.gene63347:CDS |
| ACGTGTTAGTTTCAGTCCAG+TGG | 0.576212 | 3.3:-59727505 | MS.gene63347:CDS |
| GGTGGTGGTGGAATAAATGA+AGG | 0.580631 | 3.3:-59729696 | MS.gene63347:CDS |
| GTAGCGTTCATGCCACGTGA+AGG | 0.586669 | 3.3:+59729960 | None:intergenic |
| GGAGAGTCGCGATGGAGCCG+AGG | 0.592155 | 3.3:-59729778 | MS.gene63347:CDS |
| TTGATGGAGGAGAGTCGCGA+TGG | 0.607880 | 3.3:-59729786 | MS.gene63347:CDS |
| AATCTCAACCATTGCCGAAG+AGG | 0.610208 | 3.3:-59730004 | MS.gene63347:CDS |
| GATCCAATATAGGTGATGAT+GGG | 0.621522 | 3.3:-59729875 | MS.gene63347:CDS |
| TACAATCTTCTCCGCCACCT+CGG | 0.636314 | 3.3:+59729761 | None:intergenic |
| TGGGAATAATGCTTCTGTGA+AGG | 0.639670 | 3.3:-59729718 | MS.gene63347:CDS |
| ATATTGGATCGCTTCACCGA+AGG | 0.641719 | 3.3:+59729888 | None:intergenic |
| TCACAATCAAAGGTCACGAA+GGG | 0.650446 | 3.3:-59729661 | MS.gene63347:intron |
| GACCCATCACGAATTAAACC+GGG | 0.651488 | 3.3:+59729852 | None:intergenic |
| GAGTCGCGATGGAGCCGAGG+TGG | 0.651574 | 3.3:-59729775 | MS.gene63347:CDS |
| TTCACAATCAAAGGTCACGA+AGG | 0.658645 | 3.3:-59729662 | MS.gene63347:CDS |
| TCAGTTGGATAGGTTGATGG+AGG | 0.664629 | 3.3:-59729799 | MS.gene63347:CDS |
| GAATCCAAAAGAGCATGACC+GGG | 0.671253 | 3.3:+59730128 | None:intergenic |
| AATAATGCTTCTGTGAAGGG+TGG | 0.672066 | 3.3:-59729714 | MS.gene63347:CDS |
| GTGGCATGAACGCTACTGAG+AGG | 0.701603 | 3.3:-59729953 | MS.gene63347:CDS |
| AGTGGATTACACCCTTCACG+TGG | 0.716983 | 3.3:-59729972 | MS.gene63347:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATGTTCTTAATAATAT+AGG | - | chr3.3:59729258-59729277 | MS.gene63347:intron | 10.0% |
| !!! | GCAAATATTATTTTAATAAA+AGG | + | chr3.3:59728487-59728506 | None:intergenic | 10.0% |
| !!! | TGATATACTTTTTTTTTTTT+TGG | + | chr3.3:59730063-59730082 | None:intergenic | 10.0% |
| !!! | TTATTTTAATAAAAGGTATT+TGG | + | chr3.3:59728480-59728499 | None:intergenic | 10.0% |
| !!! | TTTTAACCTTTTTTTTTTTA+TGG | - | chr3.3:59729713-59729732 | MS.gene63347:CDS | 10.0% |
| !! | AAAAAAATAGGAAAATTCTA+TGG | - | chr3.3:59728601-59728620 | MS.gene63347:intron | 15.0% |
| !! | AAAAAATTTGTAAGTATTCT+AGG | + | chr3.3:59728425-59728444 | None:intergenic | 15.0% |
| !! | AAGTATCCATAAAAAAAAAA+AGG | + | chr3.3:59729722-59729741 | None:intergenic | 15.0% |
| !! | AGTGTTTATTAAAAAATAAG+AGG | - | chr3.3:59728531-59728550 | MS.gene63347:intron | 15.0% |
| !! | ATTGTAATCTTAGTTAATAA+CGG | + | chr3.3:59729924-59729943 | None:intergenic | 15.0% |
| !! | CAAGAATAACAAAAAAAAAT+AGG | - | chr3.3:59728589-59728608 | MS.gene63347:intron | 15.0% |
| !!! | AAATTTTGGTCATTAATATT+TGG | + | chr3.3:59729170-59729189 | None:intergenic | 15.0% |
| !!! | AATACTTACAAATTTTTTTG+AGG | - | chr3.3:59728427-59728446 | MS.gene63347:intron | 15.0% |
| !!! | AATATTAATGACCAAAATTT+TGG | - | chr3.3:59729170-59729189 | MS.gene63347:intron | 15.0% |
| !!! | ATACTTACAAATTTTTTTGA+GGG | - | chr3.3:59728428-59728447 | MS.gene63347:intron | 15.0% |
| !!! | CTTATTTTTTAATAAACACT+CGG | + | chr3.3:59728531-59728550 | None:intergenic | 15.0% |
| !!! | TTTGATTCATTTTTTTTGAA+AGG | + | chr3.3:59728979-59728998 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTAGTGCAAAA+TGG | + | chr3.3:59728244-59728263 | None:intergenic | 15.0% |
| !! | AAGATTGTAAGTTTGTATAT+GGG | - | chr3.3:59727962-59727981 | MS.gene63347:intron | 20.0% |
| !! | TTTATATATTCATTTAGCCA+TGG | + | chr3.3:59730003-59730022 | None:intergenic | 20.0% |
| !!! | AAAAATGGTTACCAAAATTT+TGG | + | chr3.3:59729184-59729203 | None:intergenic | 20.0% |
| !!! | AAAACAAATATTTTCTGTCT+TGG | - | chr3.3:59729390-59729409 | MS.gene63347:intron | 20.0% |
| !!! | ACAAGAAAAGTATATATCAT+AGG | - | chr3.3:59730034-59730053 | MS.gene63347:CDS | 20.0% |
| !!! | TATATTTTCCTCTAAGAAAA+CGG | + | chr3.3:59729899-59729918 | None:intergenic | 20.0% |
| !!! | TTTACAAGTACTTTTCAATA+AGG | + | chr3.3:59729749-59729768 | None:intergenic | 20.0% |
| ! | AAAAAGAAACTTATCATGTC+AGG | + | chr3.3:59729064-59729083 | None:intergenic | 25.0% |
| ! | AAAAGAAACTTATCATGTCA+GGG | + | chr3.3:59729063-59729082 | None:intergenic | 25.0% |
| ! | AATAAATGAAGGCAAAATAG+AGG | - | chr3.3:59728024-59728043 | MS.gene63347:intron | 25.0% |
| ! | AGATTGTAAGTTTGTATATG+GGG | - | chr3.3:59727963-59727982 | MS.gene63347:intron | 25.0% |
| ! | GAAGATTGTAAGTTTGTATA+TGG | - | chr3.3:59727961-59727980 | MS.gene63347:intron | 25.0% |
| ! | TAATAATGCTTACAACATCT+TGG | + | chr3.3:59728899-59728918 | None:intergenic | 25.0% |
| ! | TAGTTGTAATTACTTGAAAG+TGG | + | chr3.3:59729835-59729854 | None:intergenic | 25.0% |
| ! | TATCTTTCAATATCATCTTG+TGG | + | chr3.3:59729097-59729116 | None:intergenic | 25.0% |
| ! | TTAAAAAATAAGAGGACACA+CGG | - | chr3.3:59728539-59728558 | MS.gene63347:intron | 25.0% |
| ! | TTATGTATGAGGTAACAATA+CGG | + | chr3.3:59729642-59729661 | None:intergenic | 25.0% |
| ! | TTGCTTGAAACTACAAATAT+AGG | + | chr3.3:59730109-59730128 | None:intergenic | 25.0% |
| !! | AACCAAGAAATAGATTTTCT+TGG | + | chr3.3:59727669-59727688 | None:intergenic | 25.0% |
| !! | TTATGAAAGAAAGTGTAACT+GGG | - | chr3.3:59729228-59729247 | MS.gene63347:intron | 25.0% |
| !! | TTTCAAAAAAGTCAGTTTTC+TGG | - | chr3.3:59729020-59729039 | MS.gene63347:intron | 25.0% |
| !!! | AGTCATAAGAATGACTTTTT+TGG | - | chr3.3:59728627-59728646 | MS.gene63347:intron | 25.0% |
| !!! | TTTCATTACCTTTGCTTTTT+TGG | + | chr3.3:59727498-59727517 | None:intergenic | 25.0% |
| AAAGAAACTTATCATGTCAG+GGG | + | chr3.3:59729062-59729081 | None:intergenic | 30.0% | |
| AAATAGAGGTTCACAATCAA+AGG | - | chr3.3:59728038-59728057 | MS.gene63347:intron | 30.0% | |
| ATTGAGATACTTCATTGAGT+TGG | - | chr3.3:59728398-59728417 | MS.gene63347:intron | 30.0% | |
| GCAAAGGTAATGAAAATAGA+TGG | - | chr3.3:59727503-59727522 | MS.gene63347:CDS | 30.0% | |
| GTTTCAATTTCTATGCAAAC+AGG | - | chr3.3:59730132-59730151 | MS.gene63347:CDS | 30.0% | |
| TAAAAAATAAGAGGACACAC+GGG | - | chr3.3:59728540-59728559 | MS.gene63347:intron | 30.0% | |
| TAAATTTGTGTTTGTAGCCA+TGG | - | chr3.3:59729983-59730002 | MS.gene63347:CDS | 30.0% | |
| TCTTGTTAAGCTATCTAACA+TGG | - | chr3.3:59729601-59729620 | MS.gene63347:intron | 30.0% | |
| TGAAACGTTGTTTACTTGTT+TGG | - | chr3.3:59728143-59728162 | MS.gene63347:intron | 30.0% | |
| TTGACTTCATCTTATGTATG+AGG | + | chr3.3:59729653-59729672 | None:intergenic | 30.0% | |
| TTTAATGAGAGTTTGCAAGT+CGG | - | chr3.3:59728192-59728211 | MS.gene63347:intron | 30.0% | |
| ! | AATACAATCCGTTTTCTTAG+AGG | - | chr3.3:59729888-59729907 | MS.gene63347:CDS | 30.0% |
| ! | AATGGTTGAGATTGAACTTT+TGG | + | chr3.3:59727698-59727717 | None:intergenic | 30.0% |
| ! | CTTATGAAAGAAAGTGTAAC+TGG | - | chr3.3:59729227-59729246 | MS.gene63347:intron | 30.0% |
| ! | GATGAATTGATGATACTATG+AGG | + | chr3.3:59728728-59728747 | None:intergenic | 30.0% |
| ! | TACAGGTACTATTTTATCGT+TGG | + | chr3.3:59728873-59728892 | None:intergenic | 30.0% |
| AATGAGATATGTACCCGTTT+CGG | - | chr3.3:59728303-59728322 | MS.gene63347:intron | 35.0% | |
| ACACAATACATATCCGAAAC+GGG | + | chr3.3:59728319-59728338 | None:intergenic | 35.0% | |
| AGTTTGTATATGGGGAATGA+TGG | - | chr3.3:59727971-59727990 | MS.gene63347:intron | 35.0% | |
| ATACACTCAACGAATTACAC+TGG | + | chr3.3:59729537-59729556 | None:intergenic | 35.0% | |
| CACACAATACATATCCGAAA+CGG | + | chr3.3:59728320-59728339 | None:intergenic | 35.0% | |
| GACGTAGTTAAAAACTATCC+CGG | - | chr3.3:59727563-59727582 | MS.gene63347:intron | 35.0% | |
| GATCCAATATAGGTGATGAT+GGG | - | chr3.3:59727834-59727853 | MS.gene63347:intron | 35.0% | |
| GTTTGTACAATGGCATCAAA+AGG | - | chr3.3:59728697-59728716 | MS.gene63347:intron | 35.0% | |
| GTTTGTATATGGGGAATGAT+GGG | - | chr3.3:59727972-59727991 | MS.gene63347:intron | 35.0% | |
| TATTTCCCCAACTTTCATCT+TGG | + | chr3.3:59729310-59729329 | None:intergenic | 35.0% | |
| TCGTAAGTGTTACACTTTGT+GGG | + | chr3.3:59728808-59728827 | None:intergenic | 35.0% | |
| TGTTACGCTTATAACAAGGT+AGG | + | chr3.3:59728784-59728803 | None:intergenic | 35.0% | |
| TTACAACATCTTGGACTTAC+AGG | + | chr3.3:59728890-59728909 | None:intergenic | 35.0% | |
| ! | GGCCAAGAAAATCTATTTCT+TGG | - | chr3.3:59727664-59727683 | MS.gene63347:intron | 35.0% |
| !! | TTTTCTTGGCCTTTAGTTGT+TGG | + | chr3.3:59727655-59727674 | None:intergenic | 35.0% |
| !!! | AGTGAAGCATTTTGGTCTTA+GGG | - | chr3.3:59727610-59727629 | MS.gene63347:intron | 35.0% |
| AATAATGCTTCTGTGAAGGG+TGG | - | chr3.3:59727995-59728014 | MS.gene63347:intron | 40.0% | |
| ACTACGTCATTTGCTTTAGC+TGG | + | chr3.3:59727551-59727570 | None:intergenic | 40.0% | |
| ACTTGTTTGGATGTTGCAAG+TGG | - | chr3.3:59728156-59728175 | MS.gene63347:intron | 40.0% | |
| ATCTTGGCATCAGCAAGATA+AGG | + | chr3.3:59729294-59729313 | None:intergenic | 40.0% | |
| ATTGCAAGTGTTTAGCTACG+TGG | - | chr3.3:59729340-59729359 | MS.gene63347:intron | 40.0% | |
| CGATCCAATATAGGTGATGA+TGG | - | chr3.3:59727833-59727852 | MS.gene63347:intron | 40.0% | |
| CGGGAAGACGATATTGAAAT+AGG | - | chr3.3:59728559-59728578 | MS.gene63347:intron | 40.0% | |
| CGTAAGTGTTACACTTTGTG+GGG | + | chr3.3:59728807-59728826 | None:intergenic | 40.0% | |
| CTGATGCCAAGATGAAAGTT+GGG | - | chr3.3:59729301-59729320 | MS.gene63347:intron | 40.0% | |
| GACTGAAACTAACACGTTTC+TGG | + | chr3.3:59730201-59730220 | None:intergenic | 40.0% | |
| GGGAAGAACCAAAAAAGCAA+AGG | - | chr3.3:59727487-59727506 | MS.gene63347:CDS | 40.0% | |
| GGGAATAATGCTTCTGTGAA+GGG | - | chr3.3:59727992-59728011 | MS.gene63347:intron | 40.0% | |
| GGTGAAAATGAGGATTCCTA+AGG | - | chr3.3:59727886-59727905 | MS.gene63347:intron | 40.0% | |
| GTCGTAAGTGTTACACTTTG+TGG | + | chr3.3:59728809-59728828 | None:intergenic | 40.0% | |
| GTTATCGAAACGTTCCGTTT+CGG | - | chr3.3:59727793-59727812 | MS.gene63347:intron | 40.0% | |
| TCACAATCAAAGGTCACGAA+GGG | - | chr3.3:59728048-59728067 | MS.gene63347:intron | 40.0% | |
| TGAACCTCACCAACAACTAA+AGG | - | chr3.3:59727643-59727662 | MS.gene63347:intron | 40.0% | |
| TGAATTTCTCCTTCTTCCAC+TGG | + | chr3.3:59730223-59730242 | None:intergenic | 40.0% | |
| TGACCCATCACGAATTAAAC+CGG | + | chr3.3:59727861-59727880 | None:intergenic | 40.0% | |
| TGATGCCAAGATGAAAGTTG+GGG | - | chr3.3:59729302-59729321 | MS.gene63347:intron | 40.0% | |
| TGATGCCATTGTACAAACAG+CGG | + | chr3.3:59728695-59728714 | None:intergenic | 40.0% | |
| TGGGAATAATGCTTCTGTGA+AGG | - | chr3.3:59727991-59728010 | MS.gene63347:intron | 40.0% | |
| TTCACAATCAAAGGTCACGA+AGG | - | chr3.3:59728047-59728066 | MS.gene63347:intron | 40.0% | |
| TTGTTCTTCTGACGTGGTTA+TGG | + | chr3.3:59729486-59729505 | None:intergenic | 40.0% | |
| ! | ATGGCAAGTTGGGTGAATTT+AGG | + | chr3.3:59729467-59729486 | None:intergenic | 40.0% |
| ! | TGAATCCAAAAGAGCATGAC+CGG | + | chr3.3:59727585-59727604 | None:intergenic | 40.0% |
| ! | TGGCAAGTTGGGTGAATTTA+GGG | + | chr3.3:59729466-59729485 | None:intergenic | 40.0% |
| !! | CAGTGAAGCATTTTGGTCTT+AGG | - | chr3.3:59727609-59727628 | MS.gene63347:intron | 40.0% |
| !! | TAATTCGTGATGGGTCAACT+CGG | - | chr3.3:59727864-59727883 | MS.gene63347:intron | 40.0% |
| !! | TCACAAGCAGTGAAGCATTT+TGG | - | chr3.3:59727602-59727621 | MS.gene63347:intron | 40.0% |
| !!! | AGCTGGAGTTTTTAGCTTGA+AGG | + | chr3.3:59727534-59727553 | None:intergenic | 40.0% |
| AACCTATCCAACTGAGCCTT+AGG | + | chr3.3:59727905-59727924 | None:intergenic | 45.0% | |
| AATCTCAACCATTGCCGAAG+AGG | - | chr3.3:59727705-59727724 | MS.gene63347:intron | 45.0% | |
| AGTTTCAGTCCAGTGGAAGA+AGG | - | chr3.3:59730211-59730230 | MS.gene63347:CDS | 45.0% | |
| ATATTGGATCGCTTCACCGA+AGG | + | chr3.3:59727824-59727843 | None:intergenic | 45.0% | |
| ATCTCAACCATTGCCGAAGA+GGG | - | chr3.3:59727706-59727725 | MS.gene63347:intron | 45.0% | |
| ATGCCATTGTACAAACAGCG+GGG | + | chr3.3:59728693-59728712 | None:intergenic | 45.0% | |
| GACCCATCACGAATTAAACC+GGG | + | chr3.3:59727860-59727879 | None:intergenic | 45.0% | |
| GATGCCATTGTACAAACAGC+GGG | + | chr3.3:59728694-59728713 | None:intergenic | 45.0% | |
| GCTGATGCCAAGATGAAAGT+TGG | - | chr3.3:59729300-59729319 | MS.gene63347:intron | 45.0% | |
| TCGGTGAAGCGATCCAATAT+AGG | - | chr3.3:59727824-59727843 | MS.gene63347:intron | 45.0% | |
| TGACGTGGTTATGGCAAGTT+GGG | + | chr3.3:59729477-59729496 | None:intergenic | 45.0% | |
| TGGATGTTGCAAGTGGATGT+TGG | - | chr3.3:59728163-59728182 | MS.gene63347:intron | 45.0% | |
| TTCCGTTTCGGATCTTCCTT+CGG | - | chr3.3:59727805-59727824 | MS.gene63347:intron | 45.0% | |
| TTCCTAAGGCTCAGTTGGAT+AGG | - | chr3.3:59727900-59727919 | MS.gene63347:intron | 45.0% | |
| ! | ACGTGTTAGTTTCAGTCCAG+TGG | - | chr3.3:59730204-59730223 | MS.gene63347:CDS | 45.0% |
| ! | AGTTGTTGGTGAGGTTCAAG+TGG | + | chr3.3:59727641-59727660 | None:intergenic | 45.0% |
| ! | GAATCCAAAAGAGCATGACC+GGG | + | chr3.3:59727584-59727603 | None:intergenic | 45.0% |
| ! | GGGGTGTTACGCTTATAACA+AGG | + | chr3.3:59728788-59728807 | None:intergenic | 45.0% |
| ! | TTGGCCTTTAGTTGTTGGTG+AGG | + | chr3.3:59727650-59727669 | None:intergenic | 45.0% |
| !! | AATATAGGTGATGATGGGCC+CGG | - | chr3.3:59727839-59727858 | MS.gene63347:intron | 45.0% |
| !! | AATTCGTGATGGGTCAACTC+GGG | - | chr3.3:59727865-59727884 | MS.gene63347:intron | 45.0% |
| !! | CTCTTGTTGTTCTTCTGACG+TGG | + | chr3.3:59729492-59729511 | None:intergenic | 45.0% |
| !! | GGTGGTGGTGGAATAAATGA+AGG | - | chr3.3:59728013-59728032 | MS.gene63347:intron | 45.0% |
| !! | TCAGTTGGATAGGTTGATGG+AGG | - | chr3.3:59727910-59727929 | MS.gene63347:intron | 45.0% |
| !!! | ACTTTTTTATATATAAAAAA+TGG | + | chr3.3:59729199-59729218 | None:intergenic | 5.0% |
| AATGCTTCTGTGAAGGGTGG+TGG | - | chr3.3:59727998-59728017 | MS.gene63347:intron | 50.0% | |
| ACACCCCGCTGTTTGTACAA+TGG | - | chr3.3:59728687-59728706 | MS.gene63347:intron | 50.0% | |
| CACCGAAGGAAGATCCGAAA+CGG | + | chr3.3:59727810-59727829 | None:intergenic | 50.0% | |
| CTGACGTGGTTATGGCAAGT+TGG | + | chr3.3:59729478-59729497 | None:intergenic | 50.0% | |
| GAGGATTCCTAAGGCTCAGT+TGG | - | chr3.3:59727895-59727914 | MS.gene63347:intron | 50.0% | |
| GAGGTAACAATACGGCGCAA+AGG | + | chr3.3:59729634-59729653 | None:intergenic | 50.0% | |
| GGCCCGGTTTAATTCGTGAT+GGG | - | chr3.3:59727855-59727874 | MS.gene63347:intron | 50.0% | |
| GGGCCCATCATCACCTATAT+TGG | + | chr3.3:59727840-59727859 | None:intergenic | 50.0% | |
| GGTCAACTCGGGTGAAAATG+AGG | - | chr3.3:59727876-59727895 | MS.gene63347:intron | 50.0% | |
| TACAATCTTCTCCGCCACCT+CGG | + | chr3.3:59727951-59727970 | None:intergenic | 50.0% | |
| TAGCGTTCATGCCACGTGAA+GGG | + | chr3.3:59727751-59727770 | None:intergenic | 50.0% | |
| TCATGTCAGGGGAGCTTCTA+CGG | + | chr3.3:59729051-59729070 | None:intergenic | 50.0% | |
| ! | ACGTGAAGGGTGTAATCCAC+TGG | + | chr3.3:59727738-59727757 | None:intergenic | 50.0% |
| ! | CTATCCCGGTCATGCTCTTT+TGG | - | chr3.3:59727577-59727596 | MS.gene63347:intron | 50.0% |
| ! | GGCTCAGTTGGATAGGTTGA+TGG | - | chr3.3:59727907-59727926 | MS.gene63347:intron | 50.0% |
| !! | AGTGGATTACACCCTTCACG+TGG | - | chr3.3:59727737-59727756 | MS.gene63347:intron | 50.0% |
| GGGCCCGGTTTAATTCGTGA+TGG | - | chr3.3:59727854-59727873 | MS.gene63347:intron | 55.0% | |
| GTAGCGTTCATGCCACGTGA+AGG | + | chr3.3:59727752-59727771 | None:intergenic | 55.0% | |
| GTGGCATGAACGCTACTGAG+AGG | - | chr3.3:59727756-59727775 | MS.gene63347:intron | 55.0% | |
| TTGATGGAGGAGAGTCGCGA+TGG | - | chr3.3:59727923-59727942 | MS.gene63347:intron | 55.0% | |
| CCACTGGATCGCACCCTCTT+CGG | + | chr3.3:59727722-59727741 | None:intergenic | 60.0% | |
| GATCGCACCCTCTTCGGCAA+TGG | + | chr3.3:59727716-59727735 | None:intergenic | 60.0% | |
| ! | GCTTCTGTGAAGGGTGGTGG+TGG | - | chr3.3:59728001-59728020 | MS.gene63347:intron | 60.0% |
| ! | CCGAAGAGGGTGCGATCCAG+TGG | - | chr3.3:59727719-59727738 | MS.gene63347:intron | 65.0% |
| GAGTCGCGATGGAGCCGAGG+TGG | - | chr3.3:59727934-59727953 | MS.gene63347:intron | 70.0% | |
| GGAGAGTCGCGATGGAGCCG+AGG | - | chr3.3:59727931-59727950 | MS.gene63347:intron | 70.0% | |
| TCGCGATGGAGCCGAGGTGG+CGG | - | chr3.3:59727937-59727956 | MS.gene63347:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 59727470 | 59730261 | 59727470 | ID=MS.gene63347 |
| chr3.3 | mRNA | 59727470 | 59730261 | 59727470 | ID=MS.gene63347.t1;Parent=MS.gene63347 |
| chr3.3 | exon | 59729662 | 59730261 | 59729662 | ID=MS.gene63347.t1.exon1;Parent=MS.gene63347.t1 |
| chr3.3 | CDS | 59729662 | 59730261 | 59729662 | ID=cds.MS.gene63347.t1;Parent=MS.gene63347.t1 |
| chr3.3 | exon | 59727470 | 59727529 | 59727470 | ID=MS.gene63347.t1.exon2;Parent=MS.gene63347.t1 |
| chr3.3 | CDS | 59727470 | 59727529 | 59727470 | ID=cds.MS.gene63347.t1;Parent=MS.gene63347.t1 |
| Gene Sequence |
| Protein sequence |
