Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63401.t1 | XP_013460633.1 | 97.6 | 165 | 4 | 0 | 14 | 178 | 1 | 165 | 2.20E-87 | 331.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63401.t1 | Q9LVH4 | 66.3 | 169 | 57 | 0 | 10 | 178 | 9 | 177 | 1.7e-64 | 246.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63401.t1 | B7FGT4 | 97.6 | 165 | 4 | 0 | 14 | 178 | 1 | 165 | 1.6e-87 | 331.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene63401 | 0.900089 | 1.04E-77 | -1.69E-46 |
| MS.gene04919 | MS.gene63401 | 0.979375 | 7.87E-148 | -1.69E-46 |
| MS.gene04920 | MS.gene63401 | 0.958102 | 5.40E-116 | -1.69E-46 |
| MS.gene049283 | MS.gene63401 | 0.828875 | 7.05E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene63401 | 0.820491 | 6.67E-53 | -1.69E-46 |
| MS.gene052296 | MS.gene63401 | 0.800182 | 1.62E-48 | -1.69E-46 |
| MS.gene054957 | MS.gene63401 | 0.804065 | 2.58E-49 | -1.69E-46 |
| MS.gene058592 | MS.gene63401 | 0.809244 | 2.08E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene63401 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene63401 | 0.804714 | 1.89E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene63401 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene63401 | 0.818289 | 2.12E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGCTTGGACGACAAAA+TGG | 0.224120 | 3.4:-68000216 | MS.gene63401:CDS |
| TTGCACTGGGTTGACATTCC+TGG | 0.251961 | 3.4:-67999984 | MS.gene63401:CDS |
| TCCTTATGTTGTCATCAAAA+TGG | 0.255133 | 3.4:-68001896 | MS.gene63401:CDS |
| CAGAAGAGAGTCACATTGTT+TGG | 0.286449 | 3.4:-68000079 | MS.gene63401:CDS |
| TTAGTCTAAGAACCATGTTT+TGG | 0.329440 | 3.4:+68000039 | None:intergenic |
| CTTGTAACTATAGCCTCGTT+TGG | 0.351980 | 3.4:+68000131 | None:intergenic |
| TGTTGGGACTTCTGTGTTCA+TGG | 0.386482 | 3.4:-68001995 | MS.gene63401:CDS |
| GAATGTCAACCCAGTGCAAC+TGG | 0.390071 | 3.4:+67999988 | None:intergenic |
| TGTGTTCATGGAGAATTTGT+TGG | 0.397879 | 3.4:-68001983 | MS.gene63401:CDS |
| AGTCACATTGTTTGGAAAGA+TGG | 0.406065 | 3.4:-68000071 | MS.gene63401:CDS |
| TGTCATCAAAATGGGAAAAC+AGG | 0.408531 | 3.4:-68001887 | MS.gene63401:intron |
| CCTTATGTTGTCATCAAAAT+GGG | 0.422679 | 3.4:-68001895 | MS.gene63401:CDS |
| GTGTTCATGGAGAATTTGTT+GGG | 0.441085 | 3.4:-68001982 | MS.gene63401:CDS |
| TTCAGCTTGGACGACAAAAT+GGG | 0.451366 | 3.4:-68000215 | MS.gene63401:CDS |
| TGGAGTATGAGGATCTGAAA+TGG | 0.452578 | 3.4:+68000862 | None:intergenic |
| AAGTGGAACTCCAGTTGCAC+TGG | 0.453056 | 3.4:-67999998 | MS.gene63401:CDS |
| CTGCCATCAGAGAATTTGTT+GGG | 0.453559 | 3.4:-68002011 | MS.gene63401:CDS |
| TTGTAACTATAGCCTCGTTT+GGG | 0.469930 | 3.4:+68000132 | None:intergenic |
| GGTTGACATTCCTGGTTCAA+AGG | 0.472769 | 3.4:-67999976 | MS.gene63401:CDS |
| CCAACAAATTCTCTGATGGC+AGG | 0.478294 | 3.4:+68002012 | None:intergenic |
| CTCAAAATTCATGTTCAAAG+AGG | 0.479689 | 3.4:-68001955 | MS.gene63401:CDS |
| GCAGTAAAGATGCGGTTGGC+AGG | 0.486595 | 3.4:-68000158 | MS.gene63401:CDS |
| AAGTTACTTACTAGATGGAT+TGG | 0.500412 | 3.4:+68000842 | None:intergenic |
| GACTAAGAAATGTTGAATGT+GGG | 0.501409 | 3.4:-68000022 | MS.gene63401:CDS |
| GTTGACATTCCTGGTTCAAA+GGG | 0.509321 | 3.4:-67999975 | MS.gene63401:CDS |
| CAAACGAGGCTATAGTTACA+AGG | 0.509760 | 3.4:-68000130 | MS.gene63401:CDS |
| ACTAGATGGATTGGAGTATG+AGG | 0.510431 | 3.4:+68000851 | None:intergenic |
| CCTGCCATCAGAGAATTTGT+TGG | 0.512310 | 3.4:-68002012 | MS.gene63401:CDS |
| CAACAAATTCTCTGATGGCA+GGG | 0.518871 | 3.4:+68002013 | None:intergenic |
| AAATGTTGAATGTGGGGAAG+TGG | 0.522688 | 3.4:-68000015 | MS.gene63401:CDS |
| TCCTGGTTCAAAGGGTATGT+AGG | 0.529433 | 3.4:-67999967 | None:intergenic |
| AGACTAAGAAATGTTGAATG+TGG | 0.533532 | 3.4:-68000023 | MS.gene63401:CDS |
| AATGCAGTTTGTGTATGATA+AGG | 0.538833 | 3.4:-68000243 | MS.gene63401:intron |
| TGATGCAGAAGCTGAAGACC+AGG | 0.545692 | 3.4:-68000934 | MS.gene63401:intron |
| AACAAATTCTCTGATGGCAG+GGG | 0.549112 | 3.4:+68002014 | None:intergenic |
| GTCAAGTCCTCGTCCCACTC+AGG | 0.564180 | 3.4:+68000890 | None:intergenic |
| ACCTACATACCCTTTGAACC+AGG | 0.570746 | 3.4:+67999966 | None:intergenic |
| TGATAAGGACACATTCAGCT+TGG | 0.578342 | 3.4:-68000228 | MS.gene63401:CDS |
| TCTAAATCCTGAGTGGGACG+AGG | 0.583435 | 3.4:-68000897 | MS.gene63401:CDS |
| TGAAGCAGTAAAGATGCGGT+TGG | 0.586646 | 3.4:-68000162 | MS.gene63401:CDS |
| TCAGCTTGGACGACAAAATG+GGG | 0.593533 | 3.4:-68000214 | MS.gene63401:CDS |
| AAAGAATCTAAATCCTGAGT+GGG | 0.594479 | 3.4:-68000903 | MS.gene63401:CDS |
| AGTGGAACTCCAGTTGCACT+GGG | 0.596489 | 3.4:-67999997 | MS.gene63401:CDS |
| ACTAAGAAATGTTGAATGTG+GGG | 0.600301 | 3.4:-68000021 | MS.gene63401:CDS |
| AGTCCCAACAAATTCTCTGA+TGG | 0.607311 | 3.4:+68002008 | None:intergenic |
| AAAAGAATCTAAATCCTGAG+TGG | 0.649840 | 3.4:-68000904 | MS.gene63401:CDS |
| GTTGGCAGGTCTCCCAAACG+AGG | 0.664369 | 3.4:-68000144 | MS.gene63401:CDS |
| GGGGACGCTGAGTTTGACAT+CGG | 0.670252 | 3.4:-68000194 | MS.gene63401:CDS |
| AAACGAGGCTATAGTTACAA+GGG | 0.687881 | 3.4:-68000129 | MS.gene63401:CDS |
| GATGCAGAAGCTGAAGACCA+GGG | 0.702840 | 3.4:-68000933 | MS.gene63401:intron |
| CAGCTTGGACGACAAAATGG+GGG | 0.704105 | 3.4:-68000213 | MS.gene63401:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATAAATGAAAAATTT+AGG | - | chr3.4:68001206-68001225 | MS.gene63401:intron | 10.0% |
| !! | AACAATAAAATTAACTGAAT+TGG | + | chr3.4:68000674-68000693 | None:intergenic | 15.0% |
| !! | AATCATAGCTATATATTATA+TGG | - | chr3.4:68000737-68000756 | MS.gene63401:intron | 15.0% |
| !! | ACTATCTGAATATTAAAAAA+TGG | - | chr3.4:68001682-68001701 | MS.gene63401:intron | 15.0% |
| !!! | CGAAAATAAGTTATATTTTA+GGG | - | chr3.4:68001405-68001424 | MS.gene63401:intron | 15.0% |
| !!! | TCATTTTGTCAAATTATTAT+TGG | + | chr3.4:68000479-68000498 | None:intergenic | 15.0% |
| !! | ATCATGAACATTATCAAATA+TGG | - | chr3.4:68001430-68001449 | MS.gene63401:intron | 20.0% |
| !! | TCATGAACATTATCAAATAT+GGG | - | chr3.4:68001431-68001450 | MS.gene63401:intron | 20.0% |
| !! | TGCTTATTGTAATATGAATT+TGG | - | chr3.4:68001587-68001606 | MS.gene63401:intron | 20.0% |
| !! | TTATTGTAATATGAATTTGG+TGG | - | chr3.4:68001590-68001609 | MS.gene63401:intron | 20.0% |
| !!! | AATTTTATTGTTAGATAGTC+TGG | - | chr3.4:68000682-68000701 | MS.gene63401:intron | 20.0% |
| !!! | GATCTTTTTGTTAATCAATT+AGG | - | chr3.4:68000142-68000161 | MS.gene63401:CDS | 20.0% |
| !!! | GCGAAAATAAGTTATATTTT+AGG | - | chr3.4:68001404-68001423 | MS.gene63401:intron | 20.0% |
| !!! | TATAACTTATTTTCGCTATA+AGG | + | chr3.4:68001400-68001419 | None:intergenic | 20.0% |
| !!! | TGTGTTTCAAATCAAAATTT+TGG | - | chr3.4:68001180-68001199 | MS.gene63401:intron | 20.0% |
| ! | AAGAAAAGTTACTTACTAGA+TGG | + | chr3.4:68001151-68001170 | None:intergenic | 25.0% |
| ! | AATAAAATGCAGCAATTAGA+TGG | + | chr3.4:68001029-68001048 | None:intergenic | 25.0% |
| ! | AATGATTCAAAAGTCTACTT+TGG | + | chr3.4:68000629-68000648 | None:intergenic | 25.0% |
| ! | ACACTGATAATTCATATTGA+AGG | + | chr3.4:68000965-68000984 | None:intergenic | 25.0% |
| ! | ATCTTTACTGCTTCAAAAAA+TGG | + | chr3.4:68001818-68001837 | None:intergenic | 25.0% |
| ! | ATGAATTATCAGTGTTACAT+AGG | - | chr3.4:68000970-68000989 | MS.gene63401:intron | 25.0% |
| ! | CATGAACATTATCAAATATG+GGG | - | chr3.4:68001432-68001451 | MS.gene63401:intron | 25.0% |
| ! | TCTTTACTGCTTCAAAAAAT+GGG | + | chr3.4:68001817-68001836 | None:intergenic | 25.0% |
| !! | AATTAGTTCAAGTTCTTACT+TGG | - | chr3.4:68001469-68001488 | MS.gene63401:intron | 25.0% |
| !! | ACATGATAAGACTTTTCAAT+TGG | - | chr3.4:68001322-68001341 | MS.gene63401:intron | 25.0% |
| !! | CTATTTTCTCACATTACTAA+CGG | + | chr3.4:68000885-68000904 | None:intergenic | 25.0% |
| !! | TGGTAAAATTTTCCAAAACA+TGG | - | chr3.4:68001934-68001953 | MS.gene63401:CDS | 25.0% |
| !! | TTTGTTGTGTTTCATTAACT+CGG | - | chr3.4:68000278-68000297 | MS.gene63401:intron | 25.0% |
| AAAAGAATCTAAATCCTGAG+TGG | - | chr3.4:68001081-68001100 | MS.gene63401:intron | 30.0% | |
| AAAGAATCTAAATCCTGAGT+GGG | - | chr3.4:68001082-68001101 | MS.gene63401:intron | 30.0% | |
| AAGTTACTTACTAGATGGAT+TGG | + | chr3.4:68001146-68001165 | None:intergenic | 30.0% | |
| AATAAGTTGTTCTCCTATTG+GGG | - | chr3.4:68000783-68000802 | MS.gene63401:intron | 30.0% | |
| AATGCAGTTTGTGTATGATA+AGG | - | chr3.4:68001742-68001761 | MS.gene63401:intron | 30.0% | |
| ACAATAAGTTGTTCTCCTAT+TGG | - | chr3.4:68000781-68000800 | MS.gene63401:intron | 30.0% | |
| ACACAAACAAGAGATACATA+AGG | + | chr3.4:68001002-68001021 | None:intergenic | 30.0% | |
| ACTAAGAAATGTTGAATGTG+GGG | - | chr3.4:68001964-68001983 | MS.gene63401:CDS | 30.0% | |
| AGACTAAGAAATGTTGAATG+TGG | - | chr3.4:68001962-68001981 | MS.gene63401:CDS | 30.0% | |
| ATTTATGTGTGGGGAAATTA+AGG | - | chr3.4:68000706-68000725 | MS.gene63401:intron | 30.0% | |
| CAATAAGTTGTTCTCCTATT+GGG | - | chr3.4:68000782-68000801 | MS.gene63401:intron | 30.0% | |
| CCTTATGTTGTCATCAAAAT+GGG | - | chr3.4:68000090-68000109 | MS.gene63401:CDS | 30.0% | |
| CTCAAAATTCATGTTCAAAG+AGG | - | chr3.4:68000030-68000049 | MS.gene63401:CDS | 30.0% | |
| GACTAAGAAATGTTGAATGT+GGG | - | chr3.4:68001963-68001982 | MS.gene63401:CDS | 30.0% | |
| TCCTTATGTTGTCATCAAAA+TGG | - | chr3.4:68000089-68000108 | MS.gene63401:CDS | 30.0% | |
| TTCATTTCAACATGCATAGA+TGG | - | chr3.4:68000384-68000403 | MS.gene63401:intron | 30.0% | |
| ! | ATAGTCTGGAATTTATGTGT+GGG | - | chr3.4:68000696-68000715 | MS.gene63401:intron | 30.0% |
| ! | GATATGAAATTTTCTCGCTT+TGG | - | chr3.4:68001238-68001257 | MS.gene63401:intron | 30.0% |
| ! | TGTAATATGAATTTGGTGGA+AGG | - | chr3.4:68001594-68001613 | MS.gene63401:intron | 30.0% |
| ! | TTAGTCTAAGAACCATGTTT+TGG | + | chr3.4:68001949-68001968 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGCAGTAAAGATG+CGG | - | chr3.4:68001819-68001838 | MS.gene63401:intron | 30.0% |
| AAACGAGGCTATAGTTACAA+GGG | - | chr3.4:68001856-68001875 | MS.gene63401:intron | 35.0% | |
| AGTCACATTGTTTGGAAAGA+TGG | - | chr3.4:68001914-68001933 | MS.gene63401:CDS | 35.0% | |
| GTTAAGACAATAACCCCAAT+AGG | + | chr3.4:68000799-68000818 | None:intergenic | 35.0% | |
| TCATCAATGAAACACAATCC+CGG | - | chr3.4:68000432-68000451 | MS.gene63401:intron | 35.0% | |
| TCTCATATTATCCGCTGTTA+AGG | - | chr3.4:68001496-68001515 | MS.gene63401:intron | 35.0% | |
| TGTCATCAAAATGGGAAAAC+AGG | - | chr3.4:68000098-68000117 | MS.gene63401:CDS | 35.0% | |
| TGTGTTCATGGAGAATTTGT+TGG | - | chr3.4:68000002-68000021 | MS.gene63401:CDS | 35.0% | |
| TTGTAACTATAGCCTCGTTT+GGG | + | chr3.4:68001856-68001875 | None:intergenic | 35.0% | |
| ! | CGTGTATTTTACCTTAACAG+CGG | + | chr3.4:68001510-68001529 | None:intergenic | 35.0% |
| ! | GAAATTTTCTCGCTTTGGTT+TGG | - | chr3.4:68001243-68001262 | MS.gene63401:intron | 35.0% |
| ! | GATAGTCTGGAATTTATGTG+TGG | - | chr3.4:68000695-68000714 | MS.gene63401:intron | 35.0% |
| ! | GTGTTCATGGAGAATTTGTT+GGG | - | chr3.4:68000003-68000022 | MS.gene63401:CDS | 35.0% |
| ! | TAGTCTGGAATTTATGTGTG+GGG | - | chr3.4:68000697-68000716 | MS.gene63401:intron | 35.0% |
| ! | TCAACATGCATAGATGGTTT+TGG | - | chr3.4:68000390-68000409 | MS.gene63401:intron | 35.0% |
| !! | CCCATTTTGATGACAACATA+AGG | + | chr3.4:68000093-68000112 | None:intergenic | 35.0% |
| !! | TAGATTCTTTTTCACTACCC+TGG | + | chr3.4:68001072-68001091 | None:intergenic | 35.0% |
| AAATGTTGAATGTGGGGAAG+TGG | - | chr3.4:68001970-68001989 | MS.gene63401:CDS | 40.0% | |
| AACAAATTCTCTGATGGCAG+GGG | + | chr3.4:67999974-67999993 | None:intergenic | 40.0% | |
| AGTCCCAACAAATTCTCTGA+TGG | + | chr3.4:67999980-67999999 | None:intergenic | 40.0% | |
| ATTCAGCTTGGACGACAAAA+TGG | - | chr3.4:68001769-68001788 | MS.gene63401:intron | 40.0% | |
| CAAACGAGGCTATAGTTACA+AGG | - | chr3.4:68001855-68001874 | MS.gene63401:intron | 40.0% | |
| CAACAAATTCTCTGATGGCA+GGG | + | chr3.4:67999975-67999994 | None:intergenic | 40.0% | |
| CAGAAGAGAGTCACATTGTT+TGG | - | chr3.4:68001906-68001925 | MS.gene63401:CDS | 40.0% | |
| CATACACAAACTGCATTGCA+AGG | + | chr3.4:68001739-68001758 | None:intergenic | 40.0% | |
| CTTGTAACTATAGCCTCGTT+TGG | + | chr3.4:68001857-68001876 | None:intergenic | 40.0% | |
| GTTGACATTCCTGGTTCAAA+GGG | - | chr3.4:68002010-68002029 | MS.gene63401:CDS | 40.0% | |
| TACATGTGTCAGTATCGTGT+AGG | - | chr3.4:68000922-68000941 | MS.gene63401:CDS | 40.0% | |
| TCTATGTTGTGTCAAGTGTC+CGG | + | chr3.4:68000454-68000473 | None:intergenic | 40.0% | |
| TGATAAGGACACATTCAGCT+TGG | - | chr3.4:68001757-68001776 | MS.gene63401:intron | 40.0% | |
| TGGAGTATGAGGATCTGAAA+TGG | + | chr3.4:68001126-68001145 | None:intergenic | 40.0% | |
| TTCAGCTTGGACGACAAAAT+GGG | - | chr3.4:68001770-68001789 | MS.gene63401:intron | 40.0% | |
| ! | CAGAAGTATGAGTGCTACAA+AGG | - | chr3.4:68000578-68000597 | MS.gene63401:intron | 40.0% |
| ! | CTGCCATCAGAGAATTTGTT+GGG | - | chr3.4:67999974-67999993 | MS.gene63401:CDS | 40.0% |
| ! | GCTAAGCAATTTTGTCTGCT+AGG | + | chr3.4:68001887-68001906 | None:intergenic | 40.0% |
| !! | ACTAGATGGATTGGAGTATG+AGG | + | chr3.4:68001137-68001156 | None:intergenic | 40.0% |
| CACATGTGTCAGTGTTGTAC+CGG | - | chr3.4:68000515-68000534 | MS.gene63401:intron | 45.0% | |
| CACATGTTAGTGTGCAACAC+CGG | + | chr3.4:68000537-68000556 | None:intergenic | 45.0% | |
| CCAACAAATTCTCTGATGGC+AGG | + | chr3.4:67999976-67999995 | None:intergenic | 45.0% | |
| CCTGCCATCAGAGAATTTGT+TGG | - | chr3.4:67999973-67999992 | MS.gene63401:CDS | 45.0% | |
| CTATGTTGTGTCAAGTGTCC+GGG | + | chr3.4:68000453-68000472 | None:intergenic | 45.0% | |
| GGTTGACATTCCTGGTTCAA+AGG | - | chr3.4:68002009-68002028 | MS.gene63401:CDS | 45.0% | |
| TCAGCTTGGACGACAAAATG+GGG | - | chr3.4:68001771-68001790 | MS.gene63401:intron | 45.0% | |
| TGAAGCAGTAAAGATGCGGT+TGG | - | chr3.4:68001823-68001842 | MS.gene63401:intron | 45.0% | |
| TGTTGGGACTTCTGTGTTCA+TGG | - | chr3.4:67999990-68000009 | MS.gene63401:CDS | 45.0% | |
| ! | CTGGTTCAAAGGGTATGTAG+AGG | - | chr3.4:68002020-68002039 | MS.gene63401:CDS | 45.0% |
| AAGTGGAACTCCAGTTGCAC+TGG | - | chr3.4:68001987-68002006 | MS.gene63401:CDS | 50.0% | |
| ACGTGTCAAGCTGTCAGCTT+CGG | + | chr3.4:68000857-68000876 | None:intergenic | 50.0% | |
| AGTGGAACTCCAGTTGCACT+GGG | - | chr3.4:68001988-68002007 | MS.gene63401:CDS | 50.0% | |
| CAGCTTGGACGACAAAATGG+GGG | - | chr3.4:68001772-68001791 | MS.gene63401:intron | 50.0% | |
| GAATGTCAACCCAGTGCAAC+TGG | + | chr3.4:68002000-68002019 | None:intergenic | 50.0% | |
| GATGCAGAAGCTGAAGACCA+GGG | - | chr3.4:68001052-68001071 | MS.gene63401:intron | 50.0% | |
| GTGTCAGTATCGTGTAGGTG+CGG | - | chr3.4:68000927-68000946 | MS.gene63401:CDS | 50.0% | |
| TCTAAATCCTGAGTGGGACG+AGG | - | chr3.4:68001088-68001107 | MS.gene63401:intron | 50.0% | |
| TGATGCAGAAGCTGAAGACC+AGG | - | chr3.4:68001051-68001070 | MS.gene63401:intron | 50.0% | |
| ! | TTGCACTGGGTTGACATTCC+TGG | - | chr3.4:68002001-68002020 | MS.gene63401:CDS | 50.0% |
| GCAGTAAAGATGCGGTTGGC+AGG | - | chr3.4:68001827-68001846 | MS.gene63401:intron | 55.0% | |
| GGGGACGCTGAGTTTGACAT+CGG | - | chr3.4:68001791-68001810 | MS.gene63401:intron | 55.0% | |
| ! | CAAGCTGTCAGCTTCGGTGT+CGG | + | chr3.4:68000851-68000870 | None:intergenic | 55.0% |
| GTCAAGTCCTCGTCCCACTC+AGG | + | chr3.4:68001098-68001117 | None:intergenic | 60.0% | |
| GTTGGCAGGTCTCCCAAACG+AGG | - | chr3.4:68001841-68001860 | MS.gene63401:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 67999968 | 68002039 | 67999968 | ID=MS.gene63401 |
| chr3.4 | mRNA | 67999968 | 68002039 | 67999968 | ID=MS.gene63401.t1;Parent=MS.gene63401 |
| chr3.4 | exon | 68001888 | 68002039 | 68001888 | ID=MS.gene63401.t1.exon1;Parent=MS.gene63401.t1 |
| chr3.4 | CDS | 68001888 | 68002039 | 68001888 | ID=cds.MS.gene63401.t1;Parent=MS.gene63401.t1 |
| chr3.4 | exon | 68000853 | 68000948 | 68000853 | ID=MS.gene63401.t1.exon2;Parent=MS.gene63401.t1 |
| chr3.4 | CDS | 68000853 | 68000948 | 68000853 | ID=cds.MS.gene63401.t1;Parent=MS.gene63401.t1 |
| chr3.4 | exon | 67999968 | 68000258 | 67999968 | ID=MS.gene63401.t1.exon3;Parent=MS.gene63401.t1 |
| chr3.4 | CDS | 67999968 | 68000258 | 67999968 | ID=cds.MS.gene63401.t1;Parent=MS.gene63401.t1 |
| Gene Sequence |
| Protein sequence |
