Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63506.t1 | XP_003600765.2 | 97.8 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 5.10E-136 | 493.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63506.t1 | Q54TS4 | 34.8 | 198 | 118 | 3 | 78 | 269 | 125 | 317 | 1.3e-23 | 111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63506.t1 | G7J9Z2 | 97.8 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 3.7e-136 | 493.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072464 | MS.gene63506 | PPI |
| MS.gene63506 | MS.gene050864 | PPI |
| MS.gene29330 | MS.gene63506 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63506.t1 | MTR_3g069150 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 540 |
| MS.gene63506.t1 | MTR_3g069170 | 97.500 | 240 | 6 | 0 | 1 | 240 | 1 | 240 | 1.89e-173 | 478 |
| MS.gene63506.t1 | MTR_3g069150 | 97.630 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 8.11e-154 | 429 |
| MS.gene63506.t1 | MTR_5g081040 | 74.359 | 273 | 68 | 2 | 1 | 272 | 1 | 272 | 1.29e-147 | 414 |
| MS.gene63506.t1 | MTR_5g081040 | 79.904 | 209 | 41 | 1 | 65 | 272 | 4 | 212 | 4.48e-121 | 345 |
| MS.gene63506.t1 | MTR_7g113620 | 40.000 | 215 | 121 | 3 | 37 | 245 | 36 | 248 | 1.67e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63506.t1 | AT2G39805 | 61.011 | 277 | 96 | 3 | 4 | 272 | 2 | 274 | 1.03e-115 | 333 |
| MS.gene63506.t1 | AT2G39805 | 60.791 | 278 | 96 | 4 | 4 | 272 | 2 | 275 | 7.85e-114 | 329 |
| MS.gene63506.t1 | AT5G27490 | 38.489 | 278 | 152 | 7 | 8 | 272 | 7 | 278 | 2.01e-54 | 177 |
| MS.gene63506.t1 | AT3G05280 | 36.822 | 258 | 147 | 6 | 11 | 258 | 11 | 262 | 1.51e-47 | 160 |
Find 58 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCCATGCAGATGCTTT+TGG | 0.236864 | 3.1:-56616626 | MS.gene63506:intron |
| ATTACAGGTATGGGCTTATA+TGG | 0.245624 | 3.1:-56615580 | MS.gene63506:intron |
| ATGCTAACCTTATACGGTTT+TGG | 0.272157 | 3.1:-56615364 | MS.gene63506:CDS |
| CTGGAACTGATCCGAGTAAA+TGG | 0.284659 | 3.1:+56617686 | None:intergenic |
| CGGAGGCGGAGGCGGACAAC+AGG | 0.291792 | 3.1:-56617270 | MS.gene63506:CDS |
| GTTCAAATGCTAACCTTATA+CGG | 0.310617 | 3.1:-56615370 | MS.gene63506:CDS |
| ACAAGCACCAAAACCGTATA+AGG | 0.349509 | 3.1:+56615357 | None:intergenic |
| TCCGCCTCCGCCTCCACTGT+TGG | 0.372021 | 3.1:+56617283 | None:intergenic |
| ACGGCTGCATGGTCTATATA+TGG | 0.373238 | 3.1:-56615443 | MS.gene63506:CDS |
| AGTGGAGGCGGAGGCGGAGG+CGG | 0.373465 | 3.1:-56617278 | MS.gene63506:CDS |
| TACAGAATACAAGATGAAAA+TGG | 0.376063 | 3.1:+56615319 | None:intergenic |
| CCGCCTCCGCCTCCACTGTT+GGG | 0.392180 | 3.1:+56617284 | None:intergenic |
| AATGTTTGCATATTTGCATA+AGG | 0.396825 | 3.1:+56617311 | None:intergenic |
| GGCAACAGCCAGCTAATAAC+TGG | 0.407158 | 3.1:-56616604 | MS.gene63506:CDS |
| CCCAACAGTGGAGGCGGAGG+CGG | 0.414258 | 3.1:-56617284 | MS.gene63506:CDS |
| CAAACTCTTGGAACTCCAAC+TGG | 0.420287 | 3.1:-56617242 | MS.gene63506:intron |
| CGTTGCAAAATTTCCAAGTA+AGG | 0.421093 | 3.1:+56615529 | None:intergenic |
| AACAGTGGAGGCGGAGGCGG+AGG | 0.422692 | 3.1:-56617281 | MS.gene63506:CDS |
| TTATTCCAGTTGAGATTCTT+CGG | 0.425394 | 3.1:-56615120 | MS.gene63506:CDS |
| ATGTTTGCATATTTGCATAA+GGG | 0.429062 | 3.1:+56617312 | None:intergenic |
| TGGATCATAATAATCCTTAC+CGG | 0.450308 | 3.1:-56615097 | MS.gene63506:CDS |
| TGATGTTAGCTATGTGAATA+CGG | 0.450659 | 3.1:-56615462 | MS.gene63506:CDS |
| ATCCACCGAAGAATCTCAAC+TGG | 0.453879 | 3.1:+56615115 | None:intergenic |
| TATATATGGCTATGTGATAG+TGG | 0.458907 | 3.1:-56615429 | MS.gene63506:CDS |
| AAATGCATAACTCACAGATC+AGG | 0.466971 | 3.1:+56616455 | None:intergenic |
| GTCATCACCGACTGGATTCA+AGG | 0.474193 | 3.1:+56616502 | None:intergenic |
| ATCAGGGTTAGCATCTATCT+TGG | 0.476639 | 3.1:+56616472 | None:intergenic |
| AATCCTTGCCAGTTATTAGC+TGG | 0.478284 | 3.1:+56616596 | None:intergenic |
| CTCCGCCTCCACTGTTGGGA+GGG | 0.497926 | 3.1:+56617288 | None:intergenic |
| CAACAGGGATATCAAACTCT+TGG | 0.506858 | 3.1:-56617254 | MS.gene63506:CDS |
| TTCCCTCCCAACAGTGGAGG+CGG | 0.507299 | 3.1:-56617290 | MS.gene63506:CDS |
| CCTCCCAACAGTGGAGGCGG+AGG | 0.514348 | 3.1:-56617287 | MS.gene63506:CDS |
| CCTCCGCCTCCACTGTTGGG+AGG | 0.519513 | 3.1:+56617287 | None:intergenic |
| TAGCTGAGGCAGCACCGGTA+AGG | 0.526708 | 3.1:+56615083 | None:intergenic |
| AAGAATGCTTCAAACAATCA+AGG | 0.526990 | 3.1:-56617523 | MS.gene63506:intron |
| AAAGCTAGCTGAGGCAGCAC+CGG | 0.543010 | 3.1:+56615078 | None:intergenic |
| ATGGCTTGTATTGCTGCTAC+TGG | 0.544057 | 3.1:+56617705 | None:intergenic |
| GCTTTGTTTCTCTGAACCTA+CGG | 0.544632 | 3.1:-56615060 | MS.gene63506:CDS |
| TATATGGATCTCAACAACAT+TGG | 0.547591 | 3.1:-56615564 | MS.gene63506:CDS |
| GGAGGCGGAGGCGGACAACA+GGG | 0.549463 | 3.1:-56617269 | MS.gene63506:CDS |
| TATAGGAAATGATCTTTCAG+TGG | 0.570515 | 3.1:-56615032 | MS.gene63506:CDS |
| AATGCATAACTCACAGATCA+GGG | 0.570733 | 3.1:+56616456 | None:intergenic |
| AATACAAGATGAAAATGGTG+AGG | 0.600170 | 3.1:+56615324 | None:intergenic |
| CAGCCAGCTAATAACTGGCA+AGG | 0.605206 | 3.1:-56616599 | MS.gene63506:CDS |
| AGCAATACAAGCCATTTACT+CGG | 0.612006 | 3.1:-56617697 | MS.gene63506:CDS |
| GCTATGTGAATACGGCTGCA+TGG | 0.612811 | 3.1:-56615454 | MS.gene63506:CDS |
| CTATGTGATAGTGGTCCCAT+TGG | 0.614198 | 3.1:-56615420 | MS.gene63506:CDS |
| ATACAGATAACAGAACATCA+TGG | 0.618085 | 3.1:-56615490 | MS.gene63506:CDS |
| ATAAGTTCCTTGAATCCAGT+CGG | 0.621033 | 3.1:-56616509 | MS.gene63506:CDS |
| CATTTGAACCCATATACTGA+AGG | 0.626704 | 3.1:+56615384 | None:intergenic |
| CAGAGAAACAAAGCTAGCTG+AGG | 0.631465 | 3.1:+56615069 | None:intergenic |
| ATACAAGATGAAAATGGTGA+GGG | 0.635833 | 3.1:+56615325 | None:intergenic |
| TTCCAGTTGAGATTCTTCGG+TGG | 0.636030 | 3.1:-56615117 | MS.gene63506:CDS |
| GAACTGAACTTTGATGAAGA+CGG | 0.639176 | 3.1:+56614973 | None:intergenic |
| ACATTCCCTCCCAACAGTGG+AGG | 0.642219 | 3.1:-56617293 | MS.gene63506:CDS |
| CAAACATTCCCTCCCAACAG+TGG | 0.649727 | 3.1:-56617296 | MS.gene63506:CDS |
| CATTTCCTATAAAAGACCGT+AGG | 0.655329 | 3.1:+56615044 | None:intergenic |
| GTACACACAGTATTTCAACG+TGG | 0.852750 | 3.1:-56616558 | MS.gene63506:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTTTGTTTAATTTT+AGG | - | chr3.1:56615747-56615766 | MS.gene63506:intron | 10.0% |
| !! | AAAAATATTACTTCTCTAAT+TGG | - | chr3.1:56616465-56616484 | MS.gene63506:intron | 15.0% |
| !! | AAGTTCATAAATATTAGATT+AGG | + | chr3.1:56615345-56615364 | None:intergenic | 15.0% |
| !! | TATATACTATGAATCTATTA+TGG | - | chr3.1:56616871-56616890 | MS.gene63506:intron | 15.0% |
| !! | TTATTAGATAAAAACATGAA+AGG | + | chr3.1:56617516-56617535 | None:intergenic | 15.0% |
| !!! | ATCAGAAATTTATACATTTT+GGG | + | chr3.1:56616637-56616656 | None:intergenic | 15.0% |
| !!! | TATCAGAAATTTATACATTT+TGG | + | chr3.1:56616638-56616657 | None:intergenic | 15.0% |
| !!! | TTATTATGCTTTTTTATTAC+TGG | - | chr3.1:56615573-56615592 | MS.gene63506:CDS | 15.0% |
| !! | AAACCCATTTATATACTTTA+TGG | - | chr3.1:56615606-56615625 | MS.gene63506:intron | 20.0% |
| !! | AAGCCATAAAGTATATAAAT+GGG | + | chr3.1:56615612-56615631 | None:intergenic | 20.0% |
| !! | ACACATAATATGTTTAGTTA+TGG | - | chr3.1:56615826-56615845 | MS.gene63506:intron | 20.0% |
| !! | ACCAGATATATTTATATAAC+AGG | + | chr3.1:56616899-56616918 | None:intergenic | 20.0% |
| !! | ACTATAAATATGCCAATTAA+TGG | - | chr3.1:56616569-56616588 | MS.gene63506:CDS | 20.0% |
| !! | ATGATTAATATAGCATAGAT+TGG | + | chr3.1:56616024-56616043 | None:intergenic | 20.0% |
| !! | CCAGATATATTTATATAACA+GGG | + | chr3.1:56616898-56616917 | None:intergenic | 20.0% |
| !! | CTATAAATATGCCAATTAAT+GGG | - | chr3.1:56616570-56616589 | MS.gene63506:CDS | 20.0% |
| !! | GACAAAATCAAATAAAATCT+CGG | + | chr3.1:56616965-56616984 | None:intergenic | 20.0% |
| !! | TTTAATTCTTTGCCATATAA+TGG | - | chr3.1:56616672-56616691 | MS.gene63506:intron | 20.0% |
| !!! | AGTAAATCGCTTTTAAATTA+TGG | - | chr3.1:56615258-56615277 | MS.gene63506:intron | 20.0% |
| !!! | TACATTTTCGATAACTAAAA+TGG | - | chr3.1:56616270-56616289 | MS.gene63506:intron | 20.0% |
| !!! | TTTTTGCAACTATAGATTTT+TGG | - | chr3.1:56615045-56615064 | MS.gene63506:CDS | 20.0% |
| ! | AAAATCAAATAAAATCTCGG+AGG | + | chr3.1:56616962-56616981 | None:intergenic | 25.0% |
| ! | AAGTCTAAACCAATTGAATA+TGG | - | chr3.1:56615799-56615818 | MS.gene63506:intron | 25.0% |
| ! | AATGTTTGCATATTTGCATA+AGG | + | chr3.1:56615380-56615399 | None:intergenic | 25.0% |
| ! | ATACTTTATTACTACAGTCT+TGG | + | chr3.1:56617046-56617065 | None:intergenic | 25.0% |
| ! | ATAGTAATTTAACCCACAAA+TGG | + | chr3.1:56616854-56616873 | None:intergenic | 25.0% |
| ! | ATGTTTGCATATTTGCATAA+GGG | + | chr3.1:56615379-56615398 | None:intergenic | 25.0% |
| ! | ATTACAACTATTCTCTAATC+AGG | + | chr3.1:56615986-56616005 | None:intergenic | 25.0% |
| ! | CATCAGTATTAATCATCTAT+CGG | + | chr3.1:56615950-56615969 | None:intergenic | 25.0% |
| ! | CCCTGTTATATAAATATATC+TGG | - | chr3.1:56616895-56616914 | MS.gene63506:intron | 25.0% |
| ! | GAAGCCATAAAGTATATAAA+TGG | + | chr3.1:56615613-56615632 | None:intergenic | 25.0% |
| ! | TACAGAATACAAGATGAAAA+TGG | + | chr3.1:56617372-56617391 | None:intergenic | 25.0% |
| ! | TATTCAAATCTACATGCAAT+TGG | + | chr3.1:56615226-56615245 | None:intergenic | 25.0% |
| !! | AAATTTATACATTTTGGGCT+AGG | + | chr3.1:56616632-56616651 | None:intergenic | 25.0% |
| !! | AGGAGAAAAACAAAACATTT+TGG | - | chr3.1:56615686-56615705 | MS.gene63506:intron | 25.0% |
| !! | ATTTTTCTTGCAAATAGCTT+TGG | - | chr3.1:56617692-56617711 | MS.gene63506:CDS | 25.0% |
| !! | TATCTGTATGTTTTTCCATA+AGG | + | chr3.1:56617187-56617206 | None:intergenic | 25.0% |
| !! | TGATACTTTTCCATTATTAC+AGG | - | chr3.1:56617093-56617112 | MS.gene63506:intron | 25.0% |
| !! | TTAATTGCTTTGTTCCAATA+TGG | + | chr3.1:56616753-56616772 | None:intergenic | 25.0% |
| !! | TTATCTGATTGTTCATCTTT+TGG | - | chr3.1:56615117-56615136 | MS.gene63506:CDS | 25.0% |
| !! | TTGTTTTCTGGATTTTGAAT+GGG | - | chr3.1:56615895-56615914 | MS.gene63506:intron | 25.0% |
| !! | TTTAGCTACTGACAATTTTA+AGG | + | chr3.1:56616786-56616805 | None:intergenic | 25.0% |
| !! | TTTTCCATTATTACAGGTAT+GGG | - | chr3.1:56617099-56617118 | MS.gene63506:intron | 25.0% |
| !!! | AGAGAAGTAATATTTTTGCA+TGG | + | chr3.1:56616462-56616481 | None:intergenic | 25.0% |
| !!! | GAGAAGTAATATTTTTGCAT+GGG | + | chr3.1:56616461-56616480 | None:intergenic | 25.0% |
| !!! | TACTTTTTCCTTCAGTATAT+GGG | - | chr3.1:56617296-56617315 | MS.gene63506:CDS | 25.0% |
| !!! | TCAAACTTAATTTGTGACTA+TGG | - | chr3.1:56615481-56615500 | MS.gene63506:CDS | 25.0% |
| !!! | TCTCTATTTTTTCCATTTGT+GGG | - | chr3.1:56616839-56616858 | MS.gene63506:intron | 25.0% |
| !!! | TGTTGTTTTATGCAAACTTA+GGG | - | chr3.1:56616537-56616556 | MS.gene63506:CDS | 25.0% |
| !!! | TGTTTAGTTATGGCTTTATT+CGG | - | chr3.1:56615836-56615855 | MS.gene63506:intron | 25.0% |
| !!! | TTCTCTATTTTTTCCATTTG+TGG | - | chr3.1:56616838-56616857 | MS.gene63506:intron | 25.0% |
| !!! | TTGTTGTTTTATGCAAACTT+AGG | - | chr3.1:56616536-56616555 | MS.gene63506:CDS | 25.0% |
| !!! | TTTGTTTTCTGGATTTTGAA+TGG | - | chr3.1:56615894-56615913 | MS.gene63506:intron | 25.0% |
| AAAAAGACTCCGAACAAAAA+AGG | + | chr3.1:56615732-56615751 | None:intergenic | 30.0% | |
| AAACTGATCTTGATTTCATG+TGG | - | chr3.1:56616295-56616314 | MS.gene63506:intron | 30.0% | |
| AACAGAAGGCAATAAGAAAA+AGG | + | chr3.1:56616417-56616436 | None:intergenic | 30.0% | |
| AAGAATGCTTCAAACAATCA+AGG | - | chr3.1:56615165-56615184 | MS.gene63506:intron | 30.0% | |
| AATACAAGATGAAAATGGTG+AGG | + | chr3.1:56617367-56617386 | None:intergenic | 30.0% | |
| AATTCTTTGCCATATAATGG+AGG | - | chr3.1:56616675-56616694 | MS.gene63506:intron | 30.0% | |
| ACAGAAGGCAATAAGAAAAA+GGG | + | chr3.1:56616416-56616435 | None:intergenic | 30.0% | |
| ATACAAGATGAAAATGGTGA+GGG | + | chr3.1:56617366-56617385 | None:intergenic | 30.0% | |
| ATACAGATAACAGAACATCA+TGG | - | chr3.1:56617198-56617217 | MS.gene63506:intron | 30.0% | |
| ATATATCTGCCTCCATTATA+TGG | + | chr3.1:56616687-56616706 | None:intergenic | 30.0% | |
| ATATATTGATCCAGCCATAT+TGG | - | chr3.1:56616736-56616755 | MS.gene63506:intron | 30.0% | |
| CAAGAAAAATGCAGCAATTA+TGG | + | chr3.1:56617682-56617701 | None:intergenic | 30.0% | |
| CGATAGATGATTAATACTGA+TGG | - | chr3.1:56615948-56615967 | MS.gene63506:intron | 30.0% | |
| CTGTCACAATTACATTTATG+GGG | - | chr3.1:56616351-56616370 | MS.gene63506:intron | 30.0% | |
| GCTGTCACAATTACATTTAT+GGG | - | chr3.1:56616350-56616369 | MS.gene63506:intron | 30.0% | |
| GTTCAAATGCTAACCTTATA+CGG | - | chr3.1:56617318-56617337 | MS.gene63506:intron | 30.0% | |
| TATAGGAAATGATCTTTCAG+TGG | - | chr3.1:56617656-56617675 | MS.gene63506:intron | 30.0% | |
| TATATATGGCTATGTGATAG+TGG | - | chr3.1:56617259-56617278 | MS.gene63506:CDS | 30.0% | |
| TATATGGATCTCAACAACAT+TGG | - | chr3.1:56617124-56617143 | MS.gene63506:intron | 30.0% | |
| TGATAACATTACTTACCAGT+TGG | + | chr3.1:56615464-56615483 | None:intergenic | 30.0% | |
| TGATGTTAGCTATGTGAATA+CGG | - | chr3.1:56617226-56617245 | MS.gene63506:intron | 30.0% | |
| TGATTGATATGAATACTCAC+TGG | + | chr3.1:56615024-56615043 | None:intergenic | 30.0% | |
| TGGATCATAATAATCCTTAC+CGG | - | chr3.1:56617591-56617610 | MS.gene63506:intron | 30.0% | |
| TGGCTGGATCAATATATTTA+TGG | + | chr3.1:56616733-56616752 | None:intergenic | 30.0% | |
| TGTGTAACACCATATTCAAT+TGG | + | chr3.1:56615811-56615830 | None:intergenic | 30.0% | |
| TTATTCCAGTTGAGATTCTT+CGG | - | chr3.1:56617568-56617587 | MS.gene63506:intron | 30.0% | |
| TTTGAGAAAATGAAAGTCAG+TGG | - | chr3.1:56616490-56616509 | MS.gene63506:CDS | 30.0% | |
| ! | AAATTTTGCAACGTACCTTA+TGG | - | chr3.1:56617169-56617188 | MS.gene63506:intron | 30.0% |
| ! | ACTTTATGGCTTCACATTTT+TGG | - | chr3.1:56615620-56615639 | MS.gene63506:intron | 30.0% |
| ! | ATGTTTTCAGTTGCATACTT+TGG | - | chr3.1:56615924-56615943 | MS.gene63506:intron | 30.0% |
| ! | CTTTATGGCTTCACATTTTT+GGG | - | chr3.1:56615621-56615640 | MS.gene63506:intron | 30.0% |
| ! | CTTTTCCATTATTACAGGTA+TGG | - | chr3.1:56617098-56617117 | MS.gene63506:intron | 30.0% |
| ! | TTGTTCATCTTTTGGTACTT+AGG | - | chr3.1:56615125-56615144 | MS.gene63506:CDS | 30.0% |
| ! | TTTATGGCTTCACATTTTTG+GGG | - | chr3.1:56615622-56615641 | MS.gene63506:intron | 30.0% |
| ! | TTTTCTTATTGCCTTCTGTT+TGG | - | chr3.1:56616417-56616436 | MS.gene63506:intron | 30.0% |
| !! | ACATTTTGGTAGTTGATGTT+TGG | - | chr3.1:56615700-56615719 | MS.gene63506:intron | 30.0% |
| !! | ATTTTACGCAGTTTGTTTTC+TGG | - | chr3.1:56615883-56615902 | MS.gene63506:intron | 30.0% |
| !! | CATTTTGGTAGTTGATGTTT+GGG | - | chr3.1:56615701-56615720 | MS.gene63506:intron | 30.0% |
| !! | TTATGGCTTTATTCGGTTAA+TGG | - | chr3.1:56615843-56615862 | MS.gene63506:intron | 30.0% |
| !!! | CTACTTTTTCCTTCAGTATA+TGG | - | chr3.1:56617295-56617314 | MS.gene63506:CDS | 30.0% |
| AAATGCATAACTCACAGATC+AGG | + | chr3.1:56616236-56616255 | None:intergenic | 35.0% | |
| AATGCATAACTCACAGATCA+GGG | + | chr3.1:56616235-56616254 | None:intergenic | 35.0% | |
| AATGCGATATGCAAGAGAAT+CGG | - | chr3.1:56616919-56616938 | MS.gene63506:intron | 35.0% | |
| ACATCATGTCTCCCATTAAT+TGG | + | chr3.1:56616584-56616603 | None:intergenic | 35.0% | |
| AGAAGGCAATAAGAAAAAGG+GGG | + | chr3.1:56616414-56616433 | None:intergenic | 35.0% | |
| AGCAATACAAGCCATTTACT+CGG | - | chr3.1:56614991-56615010 | MS.gene63506:CDS | 35.0% | |
| AGGAAAAAGTAGTATGCCAA+TGG | + | chr3.1:56617287-56617306 | None:intergenic | 35.0% | |
| ATAAGTTCCTTGAATCCAGT+CGG | - | chr3.1:56616179-56616198 | MS.gene63506:intron | 35.0% | |
| ATTAATCATTCACGTATCCG+TGG | - | chr3.1:56616035-56616054 | MS.gene63506:intron | 35.0% | |
| ATTACAGGTATGGGCTTATA+TGG | - | chr3.1:56617108-56617127 | MS.gene63506:intron | 35.0% | |
| ATTCGGTTAATGGTTGAATG+TGG | - | chr3.1:56615853-56615872 | MS.gene63506:intron | 35.0% | |
| CAGAAGGCAATAAGAAAAAG+GGG | + | chr3.1:56616415-56616434 | None:intergenic | 35.0% | |
| CATTTCCTATAAAAGACCGT+AGG | + | chr3.1:56617647-56617666 | None:intergenic | 35.0% | |
| CATTTGAACCCATATACTGA+AGG | + | chr3.1:56617307-56617326 | None:intergenic | 35.0% | |
| CGCTGTCACAATTACATTTA+TGG | - | chr3.1:56616349-56616368 | MS.gene63506:intron | 35.0% | |
| CGTTGCAAAATTTCCAAGTA+AGG | + | chr3.1:56617162-56617181 | None:intergenic | 35.0% | |
| CTTGATTTCATGTGGAAATG+TGG | - | chr3.1:56616303-56616322 | MS.gene63506:intron | 35.0% | |
| GAACTGAACTTTGATGAAGA+CGG | + | chr3.1:56617718-56617737 | None:intergenic | 35.0% | |
| GCTATCTCATTACTTAAGAC+TGG | + | chr3.1:56616992-56617011 | None:intergenic | 35.0% | |
| GGAAAAAGTAGTATGCCAAT+GGG | + | chr3.1:56617286-56617305 | None:intergenic | 35.0% | |
| TAAGCCCATACCTGTAATAA+TGG | + | chr3.1:56617106-56617125 | None:intergenic | 35.0% | |
| TAGATCACTCGTTGTTTAAG+AGG | + | chr3.1:56615779-56615798 | None:intergenic | 35.0% | |
| TTGGCATATTTATAGTCCCT+AGG | + | chr3.1:56616565-56616584 | None:intergenic | 35.0% | |
| ! | ATGCTAACCTTATACGGTTT+TGG | - | chr3.1:56617324-56617343 | MS.gene63506:intron | 35.0% |
| ! | GTTTTTGTACTTGCCTTACT+TGG | - | chr3.1:56617146-56617165 | MS.gene63506:intron | 35.0% |
| !! | ATATCGTATGCCCATTTTTG+GGG | - | chr3.1:56615645-56615664 | MS.gene63506:intron | 35.0% |
| !! | GATATCGTATGCCCATTTTT+GGG | - | chr3.1:56615644-56615663 | MS.gene63506:intron | 35.0% |
| AACATGCCATACACAGAAAG+CGG | + | chr3.1:56617400-56617419 | None:intergenic | 40.0% | |
| AAGAGAGTTACTGAAGAGCT+AGG | - | chr3.1:56616804-56616823 | MS.gene63506:intron | 40.0% | |
| AAGTTTCCGCTTTCTGTGTA+TGG | - | chr3.1:56617391-56617410 | MS.gene63506:intron | 40.0% | |
| AATCCTTGCCAGTTATTAGC+TGG | + | chr3.1:56616095-56616114 | None:intergenic | 40.0% | |
| ACAAGCACCAAAACCGTATA+AGG | + | chr3.1:56617334-56617353 | None:intergenic | 40.0% | |
| ATAACCCTCTCCCCAAAAAT+GGG | + | chr3.1:56615658-56615677 | None:intergenic | 40.0% | |
| CAACAGGGATATCAAACTCT+TGG | - | chr3.1:56615434-56615453 | MS.gene63506:CDS | 40.0% | |
| CATGGGTCAACAATGTACAA+TGG | + | chr3.1:56616444-56616463 | None:intergenic | 40.0% | |
| CCAATATGTGCTTGTGCAAA+AGG | + | chr3.1:56617464-56617483 | None:intergenic | 40.0% | |
| GTACACACAGTATTTCAACG+TGG | - | chr3.1:56616130-56616149 | MS.gene63506:intron | 40.0% | |
| TACAGTCTTGGACTCTATGT+AGG | + | chr3.1:56617034-56617053 | None:intergenic | 40.0% | |
| TGTACAATGGACCAAACAGA+AGG | + | chr3.1:56616431-56616450 | None:intergenic | 40.0% | |
| ! | ATCAGGGTTAGCATCTATCT+TGG | + | chr3.1:56616219-56616238 | None:intergenic | 40.0% |
| ! | CCTTTTGCACAAGCACATAT+TGG | - | chr3.1:56617461-56617480 | MS.gene63506:intron | 40.0% |
| ! | CTGAACCTACGGTCTTTTAT+AGG | - | chr3.1:56617639-56617658 | MS.gene63506:intron | 40.0% |
| ! | GGATATCGTATGCCCATTTT+TGG | - | chr3.1:56615643-56615662 | MS.gene63506:intron | 40.0% |
| ! | TCATCCATGCAGATGCTTTT+GGG | - | chr3.1:56616063-56616082 | MS.gene63506:intron | 40.0% |
| ! | TTCATCCATGCAGATGCTTT+TGG | - | chr3.1:56616062-56616081 | MS.gene63506:intron | 40.0% |
| ! | TTGCTTTGTTCCAATATGGC+TGG | + | chr3.1:56616749-56616768 | None:intergenic | 40.0% |
| !! | GCTTTGTTTCTCTGAACCTA+CGG | - | chr3.1:56617628-56617647 | MS.gene63506:intron | 40.0% |
| !!! | TATACGGTTTTGGTGCTTGT+GGG | - | chr3.1:56617334-56617353 | MS.gene63506:intron | 40.0% |
| !!! | TTATACGGTTTTGGTGCTTG+TGG | - | chr3.1:56617333-56617352 | MS.gene63506:intron | 40.0% |
| ACGGCTGCATGGTCTATATA+TGG | - | chr3.1:56617245-56617264 | MS.gene63506:CDS | 45.0% | |
| AGGCAATAAGAAAAAGGGGG+CGG | + | chr3.1:56616411-56616430 | None:intergenic | 45.0% | |
| ATCCACCGAAGAATCTCAAC+TGG | + | chr3.1:56617576-56617595 | None:intergenic | 45.0% | |
| CAAACTCTTGGAACTCCAAC+TGG | - | chr3.1:56615446-56615465 | MS.gene63506:CDS | 45.0% | |
| CAGAGAAACAAAGCTAGCTG+AGG | + | chr3.1:56617622-56617641 | None:intergenic | 45.0% | |
| CATAACCCTCTCCCCAAAAA+TGG | + | chr3.1:56615659-56615678 | None:intergenic | 45.0% | |
| CTGCATGGATGAATAAGCCA+CGG | + | chr3.1:56616055-56616074 | None:intergenic | 45.0% | |
| CTGGAACTGATCCGAGTAAA+TGG | + | chr3.1:56615005-56615024 | None:intergenic | 45.0% | |
| GCAAAAAAGTCATCACCGAC+TGG | + | chr3.1:56616197-56616216 | None:intergenic | 45.0% | |
| TCATGTGGAAATGTGGTGCT+TGG | - | chr3.1:56616310-56616329 | MS.gene63506:intron | 45.0% | |
| TTCCAGTTGAGATTCTTCGG+TGG | - | chr3.1:56617571-56617590 | MS.gene63506:intron | 45.0% | |
| ! | ATGCAAACTTAGGGTGCCTA+GGG | - | chr3.1:56616546-56616565 | MS.gene63506:CDS | 45.0% |
| ! | ATGGCTTGTATTGCTGCTAC+TGG | + | chr3.1:56614986-56615005 | None:intergenic | 45.0% |
| ! | TATGCAAACTTAGGGTGCCT+AGG | - | chr3.1:56616545-56616564 | MS.gene63506:CDS | 45.0% |
| !! | CTATGTGATAGTGGTCCCAT+TGG | - | chr3.1:56617268-56617287 | MS.gene63506:CDS | 45.0% |
| !! | TATGCCCATTTTTGGGGAGA+GGG | - | chr3.1:56615651-56615670 | MS.gene63506:intron | 45.0% |
| !!! | ATACGGTTTTGGTGCTTGTG+GGG | - | chr3.1:56617335-56617354 | MS.gene63506:intron | 45.0% |
| !!! | TGGGCAGAGCCTTTTTTGTT+CGG | - | chr3.1:56615720-56615739 | MS.gene63506:intron | 45.0% |
| CAAACATTCCCTCCCAACAG+TGG | - | chr3.1:56615392-56615411 | MS.gene63506:CDS | 50.0% | |
| CAGCCAGCTAATAACTGGCA+AGG | - | chr3.1:56616089-56616108 | MS.gene63506:intron | 50.0% | |
| GCGGAAGTGGAAGAAGCAAA+AGG | + | chr3.1:56616392-56616411 | None:intergenic | 50.0% | |
| GCTATGTGAATACGGCTGCA+TGG | - | chr3.1:56617234-56617253 | MS.gene63506:intron | 50.0% | |
| GGAGAGGGTTATGACTTACG+AGG | - | chr3.1:56615666-56615685 | MS.gene63506:intron | 50.0% | |
| GGCAACAGCCAGCTAATAAC+TGG | - | chr3.1:56616084-56616103 | MS.gene63506:intron | 50.0% | |
| TAAGAAAAAGGGGGCGGAAG+TGG | + | chr3.1:56616405-56616424 | None:intergenic | 50.0% | |
| TGTGGAAATGTGGTGCTTGG+AGG | - | chr3.1:56616313-56616332 | MS.gene63506:intron | 50.0% | |
| ! | GTCATCACCGACTGGATTCA+AGG | + | chr3.1:56616189-56616208 | None:intergenic | 50.0% |
| !! | GTATGCCCATTTTTGGGGAG+AGG | - | chr3.1:56615650-56615669 | MS.gene63506:intron | 50.0% |
| !! | GTTGCCCAAAAGCATCTGCA+TGG | + | chr3.1:56616070-56616089 | None:intergenic | 50.0% |
| !!! | TACGGTTTTGGTGCTTGTGG+GGG | - | chr3.1:56617336-56617355 | MS.gene63506:intron | 50.0% |
| AAAGCTAGCTGAGGCAGCAC+CGG | + | chr3.1:56617613-56617632 | None:intergenic | 55.0% | |
| ACATTCCCTCCCAACAGTGG+AGG | - | chr3.1:56615395-56615414 | MS.gene63506:CDS | 55.0% | |
| TTCCCTCCCAACAGTGGAGG+CGG | - | chr3.1:56615398-56615417 | MS.gene63506:CDS | 60.0% | |
| !! | TAGCTGAGGCAGCACCGGTA+AGG | + | chr3.1:56617608-56617627 | None:intergenic | 60.0% |
| CTCCGCCTCCACTGTTGGGA+GGG | + | chr3.1:56615403-56615422 | None:intergenic | 65.0% | |
| AACAGTGGAGGCGGAGGCGG+AGG | - | chr3.1:56615407-56615426 | MS.gene63506:CDS | 70.0% | |
| CCCAACAGTGGAGGCGGAGG+CGG | - | chr3.1:56615404-56615423 | MS.gene63506:CDS | 70.0% | |
| CCGCCTCCGCCTCCACTGTT+GGG | + | chr3.1:56615407-56615426 | None:intergenic | 70.0% | |
| CCTCCCAACAGTGGAGGCGG+AGG | - | chr3.1:56615401-56615420 | MS.gene63506:CDS | 70.0% | |
| CCTCCGCCTCCACTGTTGGG+AGG | + | chr3.1:56615404-56615423 | None:intergenic | 70.0% | |
| GGAGGCGGAGGCGGACAACA+GGG | - | chr3.1:56615419-56615438 | MS.gene63506:CDS | 70.0% | |
| TCCGCCTCCGCCTCCACTGT+TGG | + | chr3.1:56615408-56615427 | None:intergenic | 70.0% | |
| AGTGGAGGCGGAGGCGGAGG+CGG | - | chr3.1:56615410-56615429 | MS.gene63506:CDS | 75.0% | |
| CGGAGGCGGAGGCGGACAAC+AGG | - | chr3.1:56615418-56615437 | MS.gene63506:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 56614964 | 56617746 | 56614964 | ID=MS.gene63506 |
| chr3.1 | mRNA | 56614964 | 56617746 | 56614964 | ID=MS.gene63506.t1;Parent=MS.gene63506 |
| chr3.1 | exon | 56617687 | 56617746 | 56617687 | ID=MS.gene63506.t1.exon1;Parent=MS.gene63506.t1 |
| chr3.1 | CDS | 56617687 | 56617746 | 56617687 | ID=cds.MS.gene63506.t1;Parent=MS.gene63506.t1 |
| chr3.1 | exon | 56617524 | 56617563 | 56617524 | ID=MS.gene63506.t1.exon2;Parent=MS.gene63506.t1 |
| chr3.1 | CDS | 56617524 | 56617563 | 56617524 | ID=cds.MS.gene63506.t1;Parent=MS.gene63506.t1 |
| chr3.1 | exon | 56617243 | 56617335 | 56617243 | ID=MS.gene63506.t1.exon3;Parent=MS.gene63506.t1 |
| chr3.1 | CDS | 56617243 | 56617335 | 56617243 | ID=cds.MS.gene63506.t1;Parent=MS.gene63506.t1 |
| chr3.1 | exon | 56616470 | 56616635 | 56616470 | ID=MS.gene63506.t1.exon4;Parent=MS.gene63506.t1 |
| chr3.1 | CDS | 56616470 | 56616635 | 56616470 | ID=cds.MS.gene63506.t1;Parent=MS.gene63506.t1 |
| chr3.1 | exon | 56615322 | 56615595 | 56615322 | ID=MS.gene63506.t1.exon5;Parent=MS.gene63506.t1 |
| chr3.1 | CDS | 56615322 | 56615595 | 56615322 | ID=cds.MS.gene63506.t1;Parent=MS.gene63506.t1 |
| chr3.1 | exon | 56614964 | 56615152 | 56614964 | ID=MS.gene63506.t1.exon6;Parent=MS.gene63506.t1 |
| chr3.1 | CDS | 56614964 | 56615152 | 56614964 | ID=cds.MS.gene63506.t1;Parent=MS.gene63506.t1 |
| Gene Sequence |
| Protein sequence |
