Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63552.t1 | XP_013468026.1 | 93.7 | 623 | 27 | 1 | 1 | 611 | 1 | 623 | 4.50E-273 | 950.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63552.t1 | A0A072VKV4 | 93.7 | 623 | 27 | 1 | 1 | 611 | 1 | 623 | 3.3e-273 | 950.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051209 | MS.gene63552 | 0.820428 | 6.90E-53 | -1.69E-46 |
MS.gene051800 | MS.gene63552 | 0.816843 | 4.49E-52 | -1.69E-46 |
MS.gene052307 | MS.gene63552 | 0.801675 | 8.05E-49 | -1.69E-46 |
MS.gene052609 | MS.gene63552 | 0.827293 | 1.69E-54 | -1.69E-46 |
MS.gene052776 | MS.gene63552 | 0.816216 | 6.20E-52 | -1.69E-46 |
MS.gene055864 | MS.gene63552 | 0.813923 | 2.00E-51 | -1.69E-46 |
MS.gene056519 | MS.gene63552 | 0.820114 | 8.14E-53 | -1.69E-46 |
MS.gene058081 | MS.gene63552 | 0.824655 | 7.18E-54 | -1.69E-46 |
MS.gene058214 | MS.gene63552 | 0.800939 | 1.14E-48 | -1.69E-46 |
MS.gene058289 | MS.gene63552 | 0.802386 | 5.75E-49 | -1.69E-46 |
MS.gene058292 | MS.gene63552 | 0.818071 | 2.37E-52 | -1.69E-46 |
MS.gene058919 | MS.gene63552 | 0.829306 | 5.54E-55 | -1.69E-46 |
MS.gene059439 | MS.gene63552 | 0.805659 | 1.20E-49 | -1.69E-46 |
MS.gene060933 | MS.gene63552 | 0.812124 | 4.96E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63552.t1 | MTR_1g060580 | 95.185 | 623 | 18 | 1 | 1 | 611 | 1 | 623 | 0.0 | 1222 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63552.t1 | AT1G19485 | 40.827 | 556 | 231 | 18 | 62 | 609 | 8 | 473 | 3.53e-112 | 355 |
MS.gene63552.t1 | AT1G19485 | 40.827 | 556 | 231 | 18 | 62 | 609 | 8 | 473 | 3.53e-112 | 355 |
Find 141 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAATTGGTTCTCACAATT+TGG | 0.152126 | 3.2:-25830902 | None:intergenic |
TGGTTCATCTTATCACAAAA+TGG | 0.220389 | 3.2:+25830460 | MS.gene63552:CDS |
TATGGTGTCTTCTAAATATC+AGG | 0.232318 | 3.2:+25830516 | MS.gene63552:CDS |
CCTCATGATTATTTACTTGC+TGG | 0.237869 | 3.2:+25833722 | MS.gene63552:CDS |
TGTATTCGCAGCAGCTTTCT+TGG | 0.251698 | 3.2:-25831038 | None:intergenic |
ATATCAAACAAAGAAATCTT+AGG | 0.263931 | 3.2:-25827628 | None:intergenic |
GTATGCAGAAGCAGCTTTCT+TGG | 0.268262 | 3.2:-25831074 | None:intergenic |
GGGCTATCTTGCTGTCTTGT+TGG | 0.306280 | 3.2:+25831378 | MS.gene63552:CDS |
GGCTATCTTGCTGTCTTGTT+GGG | 0.307911 | 3.2:+25831379 | MS.gene63552:CDS |
AATATCCATCTAAAAGCATT+AGG | 0.316447 | 3.2:+25828328 | MS.gene63552:CDS |
AAAATGGGTGCCTCACTTAC+TGG | 0.325896 | 3.2:+25830476 | MS.gene63552:CDS |
TTCTTCTTCCCCACAGAGTT+TGG | 0.336068 | 3.2:-25827689 | None:intergenic |
AACATTGAGCATTTGAATAC+AGG | 0.343917 | 3.2:-25832677 | None:intergenic |
ATTTCTCCAGATGTAGTTCC+TGG | 0.344586 | 3.2:+25830962 | MS.gene63552:CDS |
GAACAGTAAGAGGAACAAAT+TGG | 0.352749 | 3.2:-25830916 | None:intergenic |
GAAATAAATTCAGCTGAATC+TGG | 0.353877 | 3.2:-25830944 | None:intergenic |
GCAGAGGTGCTGTGCAAATA+TGG | 0.367593 | 3.2:+25830498 | MS.gene63552:CDS |
CTTGTTGGGCAATGGATCTC+TGG | 0.375077 | 3.2:+25831393 | MS.gene63552:CDS |
TTCTCACACTGAATCAATAA+TGG | 0.377014 | 3.2:-25831175 | None:intergenic |
GTGGGTTGGATATTAATCAT+AGG | 0.379274 | 3.2:+25831122 | MS.gene63552:CDS |
ATACTTGGATTCTTGAGGTT+TGG | 0.380840 | 3.2:-25828631 | None:intergenic |
GCTAGGCATGACACAATTCT+AGG | 0.385209 | 3.2:-25831280 | None:intergenic |
GCTAAGGAAGGGAGCTGTGC+TGG | 0.397792 | 3.2:+25834918 | MS.gene63552:CDS |
AATAATGGCCTACTTGTATC+CGG | 0.416017 | 3.2:-25831160 | None:intergenic |
ATCAGGCTCCCCATGCATCC+TGG | 0.426421 | 3.2:-25828874 | None:intergenic |
GATGCTTGAGGTTCCAATAC+AGG | 0.430718 | 3.2:-25831226 | None:intergenic |
CTTGCTGTCTTGTTGGGCAA+TGG | 0.437681 | 3.2:+25831385 | MS.gene63552:CDS |
GAACTGCCAGGAACTACATC+TGG | 0.439083 | 3.2:-25830968 | None:intergenic |
GTGTCATGCCTAGCTCATAA+TGG | 0.439221 | 3.2:+25831289 | MS.gene63552:CDS |
TAAATAGTGTGGCAATACTT+AGG | 0.440499 | 3.2:-25827471 | None:intergenic |
GTTCTGTATGGGCATTAGAT+TGG | 0.440759 | 3.2:+25828847 | MS.gene63552:CDS |
ACCACATGGTAGCCCTGTAT+TGG | 0.442858 | 3.2:+25831213 | MS.gene63552:CDS |
AGGTGGCATGGGATGTCAAA+TGG | 0.446867 | 3.2:+25831314 | MS.gene63552:CDS |
TCACATTTAATTGAACAATC+AGG | 0.451414 | 3.2:-25828891 | None:intergenic |
TTACTTGCTGGCTGCCATGA+TGG | 0.453345 | 3.2:+25833734 | MS.gene63552:CDS |
GCTGTTGCTGCTCATCCACC+TGG | 0.453970 | 3.2:+25830440 | MS.gene63552:CDS |
TGCAAAAGGAGGAGCAACTT+GGG | 0.454385 | 3.2:+25828604 | MS.gene63552:CDS |
TTCATCTGCCACTGTTCCTA+AGG | 0.455578 | 3.2:+25828425 | MS.gene63552:CDS |
CCACCTTTCCATTATGAGCT+AGG | 0.467563 | 3.2:-25831297 | None:intergenic |
ATGCAAAAGGAGGAGCAACT+TGG | 0.467583 | 3.2:+25828603 | MS.gene63552:CDS |
TCCTCATGCAAGCATCGAAT+GGG | 0.467596 | 3.2:+25831358 | MS.gene63552:CDS |
ATCATATCTCCCCGGGAAGA+AGG | 0.467886 | 3.2:+25830556 | MS.gene63552:CDS |
CATGTCTTCAAAGAAATTCT+CGG | 0.470477 | 3.2:-25827656 | None:intergenic |
GAAACTCTTGTTGCAAGAAG+TGG | 0.472511 | 3.2:+25831103 | MS.gene63552:CDS |
GCTCTCAGTGCATGAGGAAG+AGG | 0.476909 | 3.2:-25832605 | None:intergenic |
TCTGGAAGTTGAACAGTAAG+AGG | 0.486423 | 3.2:-25830926 | None:intergenic |
CTCTTTGATATTAAATAGTG+TGG | 0.488495 | 3.2:-25827482 | None:intergenic |
CTATCCACTGCTATTACAGT+TGG | 0.488965 | 3.2:-25830728 | None:intergenic |
GGTTCATCTTATCACAAAAT+GGG | 0.495779 | 3.2:+25830461 | MS.gene63552:CDS |
TTCCCCACAGAGTTTGGCAA+TGG | 0.498095 | 3.2:-25827683 | None:intergenic |
ATTGATTCAGTGTGAGAATG+AGG | 0.501894 | 3.2:+25831180 | MS.gene63552:CDS |
TGAATGTTGGAGGTTCTGTA+TGG | 0.503920 | 3.2:+25828835 | MS.gene63552:CDS |
TATCAAACAAAGAAATCTTA+GGG | 0.504074 | 3.2:-25827627 | None:intergenic |
CTAGTTGGGGTTGCTAAGGA+AGG | 0.504373 | 3.2:+25834906 | MS.gene63552:intron |
ACAAATCGATAGAAATAAAG+AGG | 0.505265 | 3.2:+25830612 | MS.gene63552:CDS |
CGAGAATTTCTTTGAAGACA+TGG | 0.507947 | 3.2:+25827657 | MS.gene63552:CDS |
TCAGGCTCCCCATGCATCCT+GGG | 0.511070 | 3.2:-25828873 | None:intergenic |
ATTGGTGTCCCAGGATGCAT+GGG | 0.511202 | 3.2:+25828865 | MS.gene63552:CDS |
CTCATAATGGAAAGGTGGCA+TGG | 0.517043 | 3.2:+25831302 | MS.gene63552:CDS |
CTAAGGAAGGGAGCTGTGCT+GGG | 0.519536 | 3.2:+25834919 | MS.gene63552:CDS |
GATTGGTGTCCCAGGATGCA+TGG | 0.521867 | 3.2:+25828864 | MS.gene63552:CDS |
CTTAGGGTTAGCACCACTGC+TGG | 0.522131 | 3.2:-25827611 | None:intergenic |
GGGACCAAGTACATATCATC+TGG | 0.523971 | 3.2:+25830761 | MS.gene63552:CDS |
TCTTGTTGCAAGAAGTGGGT+TGG | 0.532860 | 3.2:+25831108 | MS.gene63552:CDS |
TTCTTTCTAGGCCTTCCTCT+AGG | 0.533374 | 3.2:-25830635 | None:intergenic |
GGGCATTAGATTGGTGTCCC+AGG | 0.534140 | 3.2:+25828856 | MS.gene63552:CDS |
CAAATTATACCGTTCCATCA+TGG | 0.534327 | 3.2:-25833748 | None:intergenic |
TTCCTCATGCAAGCATCGAA+TGG | 0.535078 | 3.2:+25831357 | MS.gene63552:CDS |
TGGGTTGGATATTAATCATA+GGG | 0.539686 | 3.2:+25831123 | MS.gene63552:CDS |
TTATCTAGTTGGGGTTGCTA+AGG | 0.542118 | 3.2:+25834902 | MS.gene63552:intron |
AAACCATACTTGGATTCTTG+AGG | 0.544459 | 3.2:-25828636 | None:intergenic |
AGAGACTTTGTGATGAATGT+TGG | 0.551861 | 3.2:+25828822 | MS.gene63552:intron |
AAAGCTGCTGCGAATACAAA+GGG | 0.552131 | 3.2:+25831043 | MS.gene63552:CDS |
CATCTGGTAGTGTCCCGAAT+GGG | 0.555876 | 3.2:+25830777 | MS.gene63552:CDS |
TGCTGGCTGCCATGATGGAA+CGG | 0.557319 | 3.2:+25833739 | MS.gene63552:CDS |
ACTACCAGATGATATGTACT+TGG | 0.557515 | 3.2:-25830765 | None:intergenic |
AAACTCTTGTTGCAAGAAGT+GGG | 0.559697 | 3.2:+25831104 | MS.gene63552:CDS |
TTAAATGTGCAGAGAATGGA+AGG | 0.560081 | 3.2:+25828299 | MS.gene63552:intron |
GCTACAGCGGCAAATGATGA+AGG | 0.560213 | 3.2:+25827574 | MS.gene63552:CDS |
TTGTATCAATTGCAGGTGGG+AGG | 0.560380 | 3.2:+25832580 | MS.gene63552:intron |
GAGAGCAGTTTATACGCAGA+AGG | 0.563777 | 3.2:+25832622 | MS.gene63552:CDS |
AATTCTTCATCTAAATGTGA+TGG | 0.566247 | 3.2:+25834847 | MS.gene63552:CDS |
GACTTTGTGATGAATGTTGG+AGG | 0.568156 | 3.2:+25828825 | MS.gene63552:CDS |
ATAATGGCCTACTTGTATCC+GGG | 0.572352 | 3.2:-25831159 | None:intergenic |
AGCAGTTTATACGCAGAAGG+AGG | 0.573083 | 3.2:+25832625 | MS.gene63552:CDS |
TGCTGATGATTCTGCTACAG+CGG | 0.574927 | 3.2:+25827561 | MS.gene63552:CDS |
ACACCATTGCCAAACTCTGT+GGG | 0.575153 | 3.2:+25827680 | MS.gene63552:CDS |
AGCAAGTAAATAATCATGAG+GGG | 0.577811 | 3.2:-25833720 | None:intergenic |
AAATAAAGAGGCCTAGAGGA+AGG | 0.580422 | 3.2:+25830624 | MS.gene63552:CDS |
TGATGTTCATCAGAACTGCC+AGG | 0.583511 | 3.2:-25830980 | None:intergenic |
GGTGCCTCACTTACTGGCAG+AGG | 0.584837 | 3.2:+25830482 | MS.gene63552:CDS |
ACTGACCACTCCACTGTCAG+TGG | 0.585703 | 3.2:-25833692 | None:intergenic |
TCATAATGGAAAGGTGGCAT+GGG | 0.586605 | 3.2:+25831303 | MS.gene63552:CDS |
GTTGTAGCCCGGATACAAGT+AGG | 0.587647 | 3.2:+25831152 | MS.gene63552:CDS |
AAGAAGTATCATATCTCCCC+GGG | 0.588430 | 3.2:+25830549 | MS.gene63552:CDS |
CAGCAAGTAAATAATCATGA+GGG | 0.589131 | 3.2:-25833721 | None:intergenic |
GAATCCAACTGTAATAGCAG+TGG | 0.589763 | 3.2:+25830724 | MS.gene63552:CDS |
GAAAGCTGCTGCGAATACAA+AGG | 0.590265 | 3.2:+25831042 | MS.gene63552:CDS |
CAGTGGATAGTACAAATTGT+GGG | 0.590541 | 3.2:+25830741 | MS.gene63552:CDS |
ATGGTGTCTTCTAAATATCA+GGG | 0.592032 | 3.2:+25830517 | MS.gene63552:CDS |
GACACCATTGCCAAACTCTG+TGG | 0.595970 | 3.2:+25827679 | MS.gene63552:CDS |
ATGCTTGAGGTTCCAATACA+GGG | 0.598484 | 3.2:-25831225 | None:intergenic |
TAGTTGGGGTTGCTAAGGAA+GGG | 0.598565 | 3.2:+25834907 | MS.gene63552:intron |
TAGGGAAAGAAGTTGTAGCC+CGG | 0.600770 | 3.2:+25831141 | MS.gene63552:CDS |
GCAAATGATGAAGGTGGTGG+TGG | 0.602662 | 3.2:+25827583 | MS.gene63552:CDS |
TCAGCATAATATGCAAAAGG+AGG | 0.605517 | 3.2:+25828593 | MS.gene63552:intron |
AAACAAGAGAGTAATGGAAG+AGG | 0.607256 | 3.2:+25827438 | None:intergenic |
GAAGAAGTATCATATCTCCC+CGG | 0.607569 | 3.2:+25830548 | MS.gene63552:CDS |
GAGGAATCAAGATTGCTAAG+AGG | 0.614969 | 3.2:-25831340 | None:intergenic |
CCAGCAAGTAAATAATCATG+AGG | 0.616229 | 3.2:-25833722 | None:intergenic |
CCTAGCTCATAATGGAAAGG+TGG | 0.620737 | 3.2:+25831297 | MS.gene63552:CDS |
GCAGTTTATACGCAGAAGGA+GGG | 0.621415 | 3.2:+25832626 | MS.gene63552:CDS |
AGCACCTCTGCCAGTAAGTG+AGG | 0.622420 | 3.2:-25830486 | None:intergenic |
GCAGTGGATAGTACAAATTG+TGG | 0.626003 | 3.2:+25830740 | MS.gene63552:CDS |
TCATCTGGTAGTGTCCCGAA+TGG | 0.626879 | 3.2:+25830776 | MS.gene63552:CDS |
ATGCCTAGCTCATAATGGAA+AGG | 0.628963 | 3.2:+25831294 | MS.gene63552:CDS |
TGATTGTTCAATTAAATGTG+AGG | 0.630368 | 3.2:+25828893 | MS.gene63552:CDS |
GCCCATTCGATGCTTGCATG+AGG | 0.635290 | 3.2:-25831359 | None:intergenic |
TAAACTGCTCTCAGTGCATG+AGG | 0.635449 | 3.2:-25832611 | None:intergenic |
TCACAGCATTCCACTGACAG+TGG | 0.636573 | 3.2:+25833682 | MS.gene63552:intron |
TTATACGCAGAAGGAGGGCA+CGG | 0.638590 | 3.2:+25832631 | MS.gene63552:CDS |
GAATGTTGGAGGTTCTGTAT+GGG | 0.641333 | 3.2:+25828836 | MS.gene63552:CDS |
TTTATATTTAGGTTGCTCTG+TGG | 0.643998 | 3.2:+25834812 | MS.gene63552:intron |
ATGGGACAAGTAGATGCTTG+AGG | 0.647867 | 3.2:-25831238 | None:intergenic |
GCAAAAGGAGGAGCAACTTG+GGG | 0.648508 | 3.2:+25828605 | MS.gene63552:CDS |
ATAGAAATAAAGAGGCCTAG+AGG | 0.655432 | 3.2:+25830620 | MS.gene63552:CDS |
GCGGCAAATGATGAAGGTGG+TGG | 0.666480 | 3.2:+25827580 | MS.gene63552:CDS |
GCATTCCACTGACAGTGGAG+TGG | 0.668981 | 3.2:+25833687 | MS.gene63552:intron |
GGTGGTGGTAGTACCAGCAG+TGG | 0.670189 | 3.2:+25827598 | MS.gene63552:CDS |
GCAAGTAAATAATCATGAGG+GGG | 0.677289 | 3.2:-25833719 | None:intergenic |
TGGCATGGGATGTCAAATGG+AGG | 0.678240 | 3.2:+25831317 | MS.gene63552:CDS |
GACTTGTACCTTAGGAACAG+TGG | 0.679559 | 3.2:-25828433 | None:intergenic |
CACCATTGCCAAACTCTGTG+GGG | 0.682548 | 3.2:+25827681 | MS.gene63552:CDS |
TGAAACGTGGCAGCTTACAG+AGG | 0.684971 | 3.2:+25832699 | MS.gene63552:CDS |
TCCAATACAGGGCTACCATG+TGG | 0.685481 | 3.2:-25831214 | None:intergenic |
TTGGTGTCCCAGGATGCATG+GGG | 0.699959 | 3.2:+25828866 | MS.gene63552:CDS |
GAGGCAAATCATCAACCACA+TGG | 0.705993 | 3.2:+25831199 | MS.gene63552:CDS |
AAATGCTCAATGTTGAAACG+TGG | 0.713740 | 3.2:+25832686 | MS.gene63552:CDS |
ACAGCGGCAAATGATGAAGG+TGG | 0.745146 | 3.2:+25827577 | MS.gene63552:CDS |
TTGTGATAAGATGAACCAGG+TGG | 0.762548 | 3.2:-25830455 | None:intergenic |
ACAGTGGCAGATGAAAACTG+AGG | 0.800494 | 3.2:-25828417 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 25827451 | 25834947 | 25827451 | ID=MS.gene63552 |
chr3.2 | mRNA | 25827451 | 25834947 | 25827451 | ID=MS.gene63552.t1;Parent=MS.gene63552 |
chr3.2 | exon | 25827451 | 25827773 | 25827451 | ID=MS.gene63552.t1.exon1;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25827451 | 25827773 | 25827451 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25828311 | 25828446 | 25828311 | ID=MS.gene63552.t1.exon2;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25828311 | 25828446 | 25828311 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25828597 | 25828649 | 25828597 | ID=MS.gene63552.t1.exon3;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25828597 | 25828649 | 25828597 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25828824 | 25828914 | 25828824 | ID=MS.gene63552.t1.exon4;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25828824 | 25828914 | 25828824 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25830434 | 25831419 | 25830434 | ID=MS.gene63552.t1.exon5;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25830434 | 25831419 | 25830434 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25832595 | 25832720 | 25832595 | ID=MS.gene63552.t1.exon6;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25832595 | 25832720 | 25832595 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25833688 | 25833760 | 25833688 | ID=MS.gene63552.t1.exon7;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25833688 | 25833760 | 25833688 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25834823 | 25834868 | 25834823 | ID=MS.gene63552.t1.exon8;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25834823 | 25834868 | 25834823 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
chr3.2 | exon | 25834910 | 25834947 | 25834910 | ID=MS.gene63552.t1.exon9;Parent=MS.gene63552.t1 |
chr3.2 | CDS | 25834910 | 25834947 | 25834910 | ID=cds.MS.gene63552.t1;Parent=MS.gene63552.t1 |
Gene Sequence |
Protein sequence |