Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058214.t1 | XP_003594781.2 | 94.3 | 876 | 49 | 1 | 4 | 879 | 9 | 883 | 0.00E+00 | 1353.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058214.t1 | Q4S6U8 | 35.9 | 644 | 372 | 12 | 11 | 630 | 7 | 633 | 2.7e-110 | 401.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058214.t1 | G7IG10 | 94.3 | 876 | 49 | 1 | 4 | 879 | 9 | 883 | 0.0e+00 | 1353.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057869 | MS.gene058214 | 0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene058214 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene058214 | 0.805553 | 1.26E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene062156 | 0.805681 | 1.19E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene073132 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene058214 | MS.gene07510 | 0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene058214 | MS.gene37876 | 0.813182 | 2.91E-51 | -1.69E-46 |
| MS.gene058214 | MS.gene45613 | 0.806976 | 6.33E-50 | -1.69E-46 |
| MS.gene058214 | MS.gene45641 | 0.810721 | 1.00E-50 | -1.69E-46 |
| MS.gene058214 | MS.gene49423 | 0.804377 | 2.22E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene50869 | 0.821259 | 4.44E-53 | -1.69E-46 |
| MS.gene058214 | MS.gene53064 | 0.811834 | 5.74E-51 | -1.69E-46 |
| MS.gene058214 | MS.gene53409 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene63552 | 0.800939 | 1.14E-48 | -1.69E-46 |
| MS.gene058214 | MS.gene65291 | 0.818759 | 1.66E-52 | -1.69E-46 |
| MS.gene058214 | MS.gene68264 | 0.828923 | 6.86E-55 | -1.69E-46 |
| MS.gene058214 | MS.gene74932 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene75038 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene058214 | MS.gene84498 | 0.803374 | 3.59E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene86826 | 0.808461 | 3.06E-50 | -1.69E-46 |
| MS.gene058214 | MS.gene90431 | 0.805199 | 1.50E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene95096 | 0.805928 | 1.05E-49 | -1.69E-46 |
| MS.gene058214 | MS.gene99525 | 0.804925 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058214.t1 | MTR_2g034560 | 97.123 | 869 | 24 | 1 | 11 | 879 | 16 | 883 | 0.0 | 1743 |
| MS.gene058214.t1 | MTR_4g121890 | 72.414 | 870 | 231 | 6 | 11 | 878 | 16 | 878 | 0.0 | 1258 |
| MS.gene058214.t1 | MTR_2g034560 | 96.810 | 627 | 20 | 0 | 4 | 630 | 9 | 635 | 0.0 | 1256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058214.t1 | AT3G06670 | 64.948 | 873 | 275 | 9 | 11 | 878 | 16 | 862 | 0.0 | 1095 |
| MS.gene058214.t1 | AT3G06670 | 63.423 | 894 | 275 | 10 | 11 | 878 | 16 | 883 | 0.0 | 1082 |
| MS.gene058214.t1 | AT5G49390 | 52.599 | 654 | 285 | 9 | 11 | 658 | 12 | 646 | 0.0 | 660 |
| MS.gene058214.t1 | AT5G49390 | 59.317 | 322 | 127 | 2 | 11 | 331 | 12 | 330 | 2.50e-130 | 395 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGAATGGTAACAGATTT+TGG | 0.089946 | 2.4:+56163197 | MS.gene058214:CDS |
| TTTGCATTACTTACTATTTA+AGG | 0.090933 | 2.4:-56155594 | None:intergenic |
| CTGCGAGCCATTCAGATTTA+AGG | 0.133273 | 2.4:+56165757 | MS.gene058214:CDS |
| CTAAAATACTTGAATGAAAA+TGG | 0.194642 | 2.4:+56154313 | None:intergenic |
| GCTAGTGAGATTTGAGAATT+TGG | 0.197106 | 2.4:+56165312 | MS.gene058214:CDS |
| GCTTTGTCCCACTGTGATTT+TGG | 0.203108 | 2.4:-56163660 | None:intergenic |
| TCCTTTGCACGTTGCAAATA+TGG | 0.236602 | 2.4:-56155556 | None:intergenic |
| GACAAGAAGCTTGTGCTTAC+TGG | 0.241344 | 2.4:+56162517 | MS.gene058214:CDS |
| TTGTGAGGATTTGGAAAATA+TGG | 0.251673 | 2.4:+56158801 | MS.gene058214:CDS |
| GGCCATCTCTGGCGAGGATT+TGG | 0.255382 | 2.4:-56166361 | None:intergenic |
| ATACATCAAACATATAAAAT+TGG | 0.264422 | 2.4:+56159365 | MS.gene058214:CDS |
| TTAGACTCATCTACATTGTC+TGG | 0.266676 | 2.4:+56163263 | MS.gene058214:CDS |
| CATATATAGTTGATTCGTTC+TGG | 0.267081 | 2.4:+56165284 | MS.gene058214:CDS |
| ATGGAAAAGAAAACAAATTA+TGG | 0.268279 | 2.4:+56154332 | MS.gene058214:CDS |
| ACATCATCGTGAGTTCTTAA+AGG | 0.274131 | 2.4:+56159180 | MS.gene058214:CDS |
| ATTCAGAGTTTGTGAGGATT+TGG | 0.277374 | 2.4:+56158792 | MS.gene058214:CDS |
| GCTATCTCAGTGGCATATTC+TGG | 0.281183 | 2.4:-56155388 | None:intergenic |
| ACAAATTTGTTGCTCGCATT+AGG | 0.288108 | 2.4:-56163619 | None:intergenic |
| TCGCCAGAGATGGCCGTTAA+AGG | 0.294556 | 2.4:+56166369 | MS.gene058214:CDS |
| CAGGAAGGAGTCTCACTTCT+TGG | 0.297087 | 2.4:+56162707 | MS.gene058214:CDS |
| GAAGCTTCTGGCTGCTTCCT+TGG | 0.298496 | 2.4:-56165928 | None:intergenic |
| TCATCCTCTTCAGAAGCTTC+TGG | 0.313703 | 2.4:-56165940 | None:intergenic |
| CAACAAGGAAATACTTTATT+CGG | 0.325362 | 2.4:-56163741 | None:intergenic |
| AAGATGACAATGCATTTATT+CGG | 0.334459 | 2.4:+56159731 | MS.gene058214:CDS |
| GTTTAGTGATGAGTTTATAA+TGG | 0.335598 | 2.4:+56158990 | MS.gene058214:CDS |
| CAAATTTGTTGCTCGCATTA+GGG | 0.339396 | 2.4:-56163618 | None:intergenic |
| ATTCATTGTATGTAGAGATA+TGG | 0.341344 | 2.4:+56162447 | MS.gene058214:intron |
| CAGTCCGAGGTCCGGTGGAC+TGG | 0.341576 | 2.4:+56165861 | MS.gene058214:intron |
| AACGCTTCCATTGATTCTTA+AGG | 0.353098 | 2.4:+56156296 | MS.gene058214:CDS |
| ATCTGGTTGTTGGTGCTATT+CGG | 0.354021 | 2.4:+56163904 | MS.gene058214:CDS |
| CTTTAGATACAATTATTTCA+TGG | 0.357717 | 2.4:+56155359 | MS.gene058214:intron |
| TCGAATGGCACTACAGATAA+TGG | 0.358374 | 2.4:+56166303 | MS.gene058214:CDS |
| AGGAAATACTTTATTCGGTA+TGG | 0.362237 | 2.4:-56163736 | None:intergenic |
| GCCATCTCTGGCGAGGATTT+GGG | 0.366834 | 2.4:-56166360 | None:intergenic |
| AAATGGGACGACCAGGGCAC+TGG | 0.368782 | 2.4:+56154622 | MS.gene058214:CDS |
| TGTCACTGTTGATTATTTAG+AGG | 0.386164 | 2.4:+56154648 | MS.gene058214:CDS |
| AGATGACAATGCATTTATTC+GGG | 0.397204 | 2.4:+56159732 | MS.gene058214:CDS |
| TGCGAAGAATCTCAAGAAAC+TGG | 0.399221 | 2.4:-56163235 | None:intergenic |
| CATATGTTCAATAGAATCTC+TGG | 0.401225 | 2.4:-56163682 | None:intergenic |
| GAGTTTATAATGGACATAAT+TGG | 0.403584 | 2.4:+56159000 | MS.gene058214:CDS |
| CTTGTGTTCAACTTTGAGCC+AGG | 0.406621 | 2.4:+56166083 | MS.gene058214:CDS |
| GCATCAGCAGCAGCCGCCGC+AGG | 0.427727 | 2.4:+56165716 | MS.gene058214:CDS |
| TGTGGTCGAGAGTGGGATTA+CGG | 0.431946 | 2.4:+56157867 | MS.gene058214:CDS |
| GTAGACGTCTTCGTTGCTAA+TGG | 0.435341 | 2.4:+56164876 | MS.gene058214:CDS |
| GTCTGAATGATGATGGGAAA+TGG | 0.435675 | 2.4:+56154605 | MS.gene058214:CDS |
| ATCTACATTGTCTGGGGCAC+AGG | 0.437317 | 2.4:+56163271 | MS.gene058214:CDS |
| CTGGTGGATGCTCTTTCATA+TGG | 0.438690 | 2.4:+56155428 | MS.gene058214:CDS |
| GAACCTTTAACGGCCATCTC+TGG | 0.438703 | 2.4:-56166372 | None:intergenic |
| AAAGTTGCCTTTGAAGGATA+AGG | 0.439053 | 2.4:+56165993 | MS.gene058214:CDS |
| ACATAGGATCGGAGAAGATT+AGG | 0.439062 | 2.4:-56162677 | None:intergenic |
| ATCCAAACCTTAAGAATCAA+TGG | 0.439199 | 2.4:-56156303 | None:intergenic |
| AGTGGTGATCAGACAATTGA+TGG | 0.447983 | 2.4:+56166144 | MS.gene058214:CDS |
| TTTGATTCAGGAGAGGTAGT+TGG | 0.450221 | 2.4:-56159778 | None:intergenic |
| TCTGGCTGCTTCCTTGGTGG+TGG | 0.450716 | 2.4:-56165922 | None:intergenic |
| ATATATAGTTGATTCGTTCT+GGG | 0.461272 | 2.4:+56165285 | MS.gene058214:CDS |
| GTCTACCGTCTGAATGATGA+TGG | 0.468529 | 2.4:+56154598 | MS.gene058214:CDS |
| TAGACTCATCTACATTGTCT+GGG | 0.473295 | 2.4:+56163264 | MS.gene058214:CDS |
| GGGTGGCGAGGAACATTCAC+TGG | 0.474514 | 2.4:+56166332 | MS.gene058214:CDS |
| ATGGCTCGCAGCAGCTCCAT+TGG | 0.477439 | 2.4:-56165745 | None:intergenic |
| CAGTGTAAACAGTGAGTTGA+GGG | 0.479328 | 2.4:+56156251 | MS.gene058214:CDS |
| CACTACAGATAATGGACAGT+TGG | 0.485197 | 2.4:+56166311 | MS.gene058214:CDS |
| AATGGGACGACCAGGGCACT+GGG | 0.489252 | 2.4:+56154623 | MS.gene058214:CDS |
| CAGTGACATGCCCAGTGCCC+TGG | 0.492399 | 2.4:-56154633 | None:intergenic |
| AAGTATACCTTAAATCTGAA+TGG | 0.493670 | 2.4:-56165764 | None:intergenic |
| TTGGATAATGATGGGACAAA+AGG | 0.494132 | 2.4:+56165477 | MS.gene058214:CDS |
| TTGCAGTGTTTGGATAATGA+TGG | 0.496771 | 2.4:+56165468 | MS.gene058214:intron |
| AATGCAGCGATCAGAAGAGC+TGG | 0.498925 | 2.4:+56155077 | MS.gene058214:intron |
| TGAAGAGGATGAAGGGGCAT+TGG | 0.499375 | 2.4:+56165951 | MS.gene058214:CDS |
| TGATGGGAAATGGGACGACC+AGG | 0.501263 | 2.4:+56154615 | MS.gene058214:CDS |
| CCGCCGCAGGTGTTATCCAA+TGG | 0.502171 | 2.4:+56165729 | MS.gene058214:CDS |
| ACAAGAAGCTTGTGCTTACT+GGG | 0.502874 | 2.4:+56162518 | MS.gene058214:CDS |
| TCTTACCAGGTAGTACAGCC+TGG | 0.504519 | 2.4:-56166101 | None:intergenic |
| ACCATATTTGCAACGTGCAA+AGG | 0.505363 | 2.4:+56155555 | MS.gene058214:CDS |
| ATCGGAGAAGATTAGGATCC+TGG | 0.505731 | 2.4:-56162670 | None:intergenic |
| GCTTCTGGCTGCTTCCTTGG+TGG | 0.507961 | 2.4:-56165925 | None:intergenic |
| AAGGGGCATTGGAGTTGCTC+GGG | 0.510108 | 2.4:+56165962 | MS.gene058214:CDS |
| GGAAATACTTTATTCGGTAT+GGG | 0.512152 | 2.4:-56163735 | None:intergenic |
| GAAGCTTCTGAAGAGGATGA+AGG | 0.512916 | 2.4:+56165943 | MS.gene058214:CDS |
| TGTTGAGCATGAGGAACCTC+TGG | 0.513659 | 2.4:-56159160 | None:intergenic |
| GAAACGAAAGTTGCCTTTGA+AGG | 0.515256 | 2.4:+56165987 | MS.gene058214:CDS |
| GAAGGGGCATTGGAGTTGCT+CGG | 0.520507 | 2.4:+56165961 | MS.gene058214:CDS |
| TCTATTTCACGTCATCAGAA+AGG | 0.523021 | 2.4:+56165690 | MS.gene058214:CDS |
| TGATCTTCGAAGACGAATTG+AGG | 0.524306 | 2.4:+56165512 | MS.gene058214:CDS |
| ATGTAGAGATATGGTAAATG+AGG | 0.525319 | 2.4:+56162456 | MS.gene058214:intron |
| AGCGTTGATAATTCAACTGC+AGG | 0.526021 | 2.4:-56156279 | None:intergenic |
| CCGATCCTATGTGGTTCGAC+AGG | 0.526655 | 2.4:+56162688 | MS.gene058214:CDS |
| GATCCATCAGAGAAGTTCCT+AGG | 0.530336 | 2.4:-56166282 | None:intergenic |
| ACTACAGATAATGGACAGTT+GGG | 0.531174 | 2.4:+56166312 | MS.gene058214:CDS |
| AATATCTTGCCGCCTCCCAT+TGG | 0.531299 | 2.4:-56166558 | None:intergenic |
| ACTGAAAGTAAAATATGAGC+AGG | 0.532728 | 2.4:+56165348 | MS.gene058214:CDS |
| TCTCATTCTCTTCTTGAACC+AGG | 0.534558 | 2.4:+56162652 | MS.gene058214:CDS |
| CAGATGATATACAGTGCCAA+TGG | 0.537700 | 2.4:+56166542 | MS.gene058214:intron |
| CTATTTCACGTCATCAGAAA+GGG | 0.538741 | 2.4:+56165691 | MS.gene058214:CDS |
| GTCTTCACTTTGCAAGACAT+CGG | 0.538851 | 2.4:-56162497 | None:intergenic |
| AGTCTCACTTCTTGGACTGT+TGG | 0.539277 | 2.4:+56162715 | MS.gene058214:CDS |
| TCCTATGTGGTTCGACAGGA+AGG | 0.542415 | 2.4:+56162692 | MS.gene058214:CDS |
| TAATGCACAGGTTAGAGGAA+TGG | 0.545419 | 2.4:+56163184 | MS.gene058214:intron |
| ACCCAAATCCTCGCCAGAGA+TGG | 0.545536 | 2.4:+56166359 | MS.gene058214:CDS |
| TCTGAATGATGATGGGAAAT+GGG | 0.547136 | 2.4:+56154606 | MS.gene058214:CDS |
| AAGCTTCTGAAGAGGATGAA+GGG | 0.547806 | 2.4:+56165944 | MS.gene058214:CDS |
| TTGAGCCAGGCTGTACTACC+TGG | 0.549927 | 2.4:+56166096 | MS.gene058214:CDS |
| AAGACTACTTTAATGAGGAC+AGG | 0.553279 | 2.4:+56165559 | MS.gene058214:CDS |
| CATATGAAAGAGCATCCACC+AGG | 0.555331 | 2.4:-56155427 | None:intergenic |
| AACTTCTCTGATGGATCGAA+TGG | 0.555707 | 2.4:+56166288 | MS.gene058214:CDS |
| GCTTACATGACGAGAGAGAA+TGG | 0.557195 | 2.4:-56163937 | None:intergenic |
| ACACCTAGGAACTTCTCTGA+TGG | 0.557276 | 2.4:+56166279 | MS.gene058214:CDS |
| TTATTCGGGAGTTCTTTGCT+AGG | 0.557818 | 2.4:+56159746 | MS.gene058214:CDS |
| AGATGATATACAGTGCCAAT+GGG | 0.560944 | 2.4:+56166543 | MS.gene058214:intron |
| CAAGATATTATAGAGCAACT+TGG | 0.561508 | 2.4:+56166572 | MS.gene058214:CDS |
| ATCGTAGTCAACCAGTCCAC+CGG | 0.562726 | 2.4:-56165872 | None:intergenic |
| TGTAGAGATATGGTAAATGA+GGG | 0.568011 | 2.4:+56162457 | MS.gene058214:intron |
| TCTGTCACCTTATCCTTCAA+AGG | 0.573333 | 2.4:-56166000 | None:intergenic |
| ACTGCAATCAACGATCATAG+TGG | 0.575561 | 2.4:+56166126 | MS.gene058214:CDS |
| GATATTTACCGAAAACAAGA+AGG | 0.575917 | 2.4:+56155162 | MS.gene058214:CDS |
| TCACAGACTGTGGTCGAGAG+TGG | 0.577462 | 2.4:+56157859 | MS.gene058214:intron |
| CACAGACTGTGGTCGAGAGT+GGG | 0.579157 | 2.4:+56157860 | MS.gene058214:intron |
| TGAAGTATTCAGAGTTTGTG+AGG | 0.580756 | 2.4:+56158786 | MS.gene058214:CDS |
| AGTCGAAGCTGCTGTACCAT+CGG | 0.580806 | 2.4:-56161862 | None:intergenic |
| TATTGAATTTCAGCGTGTCA+AGG | 0.584586 | 2.4:+56154576 | MS.gene058214:intron |
| AGCTTCTGAAGAGGATGAAG+GGG | 0.586384 | 2.4:+56165945 | MS.gene058214:CDS |
| CGTCTACAAGTGGTTTGAGA+AGG | 0.587407 | 2.4:-56164860 | None:intergenic |
| GCACTAAGCTTTCAAGAACC+TGG | 0.588094 | 2.4:+56155409 | MS.gene058214:CDS |
| CTGGCTCAAAGTTGAACACA+AGG | 0.592116 | 2.4:-56166082 | None:intergenic |
| TAATGGACAGTTGGGTGGCG+AGG | 0.593874 | 2.4:+56166320 | MS.gene058214:CDS |
| GCGTGCTTTAGAGAAAGAAG+AGG | 0.597626 | 2.4:+56165536 | MS.gene058214:CDS |
| TATACAGTGCCAATGGGAGG+CGG | 0.602871 | 2.4:+56166549 | MS.gene058214:CDS |
| AAATATGGATGGCCTTCACA+TGG | 0.603238 | 2.4:+56158816 | MS.gene058214:CDS |
| TGCAGTGTTTGGATAATGAT+GGG | 0.611909 | 2.4:+56165469 | MS.gene058214:intron |
| ATTTCCCATCATCATTCAGA+CGG | 0.612029 | 2.4:-56154603 | None:intergenic |
| AGAGGAAGACTACTTTAATG+AGG | 0.614213 | 2.4:+56165554 | MS.gene058214:CDS |
| GCAGCCAGAAGCTTCTGAAG+AGG | 0.617982 | 2.4:+56165936 | MS.gene058214:CDS |
| ATGCAGCGATCAGAAGAGCT+GGG | 0.618127 | 2.4:+56155078 | MS.gene058214:intron |
| TCACGATGATGTTGAGCATG+AGG | 0.622085 | 2.4:-56159169 | None:intergenic |
| TCAACCAGTCCACCGGACCT+CGG | 0.622217 | 2.4:-56165865 | None:intergenic |
| AGACTCATCTACATTGTCTG+GGG | 0.623551 | 2.4:+56163265 | MS.gene058214:CDS |
| GCAACGAAGACGTCTACAAG+TGG | 0.625269 | 2.4:-56164870 | None:intergenic |
| TAATCTTCTCCGATCCTATG+TGG | 0.631233 | 2.4:+56162679 | MS.gene058214:CDS |
| ACAGATAATGGACAGTTGGG+TGG | 0.631479 | 2.4:+56166315 | MS.gene058214:CDS |
| AATACTTTATTCGGTATGGG+TGG | 0.635180 | 2.4:-56163732 | None:intergenic |
| GAGGATTTGGAAAATATGGA+TGG | 0.636956 | 2.4:+56158805 | MS.gene058214:CDS |
| TTTAACGGCCATCTCTGGCG+AGG | 0.637022 | 2.4:-56166367 | None:intergenic |
| CCTGTCGAACCACATAGGAT+CGG | 0.642665 | 2.4:-56162688 | None:intergenic |
| AAGGAGACCAAAATCACAGT+GGG | 0.645129 | 2.4:+56163653 | MS.gene058214:CDS |
| GTGGTGATCAGACAATTGAT+GGG | 0.645553 | 2.4:+56166145 | MS.gene058214:CDS |
| TCTACCGTCTGAATGATGAT+GGG | 0.646554 | 2.4:+56154599 | MS.gene058214:CDS |
| TCCTTCCTGTCGAACCACAT+AGG | 0.647928 | 2.4:-56162693 | None:intergenic |
| CTAAGCTTTCAAGAACCTGG+TGG | 0.648285 | 2.4:+56155412 | MS.gene058214:CDS |
| TGATATACAGTGCCAATGGG+AGG | 0.649703 | 2.4:+56166546 | MS.gene058214:CDS |
| AGAAAGAAACTGATACACCT+AGG | 0.653012 | 2.4:+56166265 | MS.gene058214:CDS |
| GTGGTTAATCAGTGATGATG+AGG | 0.661299 | 2.4:+56165653 | MS.gene058214:intron |
| TTTAAGCAAGAGCTTACCGA+TGG | 0.664154 | 2.4:+56161846 | MS.gene058214:CDS |
| TGTTACTTCAGATAATCCAG+AGG | 0.664243 | 2.4:+56159144 | MS.gene058214:intron |
| ATGACGTGAAATAGACGTAG+AGG | 0.669697 | 2.4:-56165682 | None:intergenic |
| GATGGGAAATGGGACGACCA+GGG | 0.670847 | 2.4:+56154616 | MS.gene058214:CDS |
| GCTCCATTGGATAACACCTG+CGG | 0.671107 | 2.4:-56165732 | None:intergenic |
| ACAGTGTAAACAGTGAGTTG+AGG | 0.684304 | 2.4:+56156250 | MS.gene058214:CDS |
| AAATTTGTAGACCCTGACAA+AGG | 0.691993 | 2.4:+56163634 | MS.gene058214:CDS |
| AAGATTACAAGCCACCACCA+AGG | 0.706833 | 2.4:+56165911 | MS.gene058214:CDS |
| GGTTGACTACGATGATGATG+AGG | 0.714543 | 2.4:+56165882 | MS.gene058214:CDS |
| CCATTGGATAACACCTGCGG+CGG | 0.717318 | 2.4:-56165729 | None:intergenic |
| AAAGCTTAGTGCTATCTCAG+TGG | 0.717675 | 2.4:-56155398 | None:intergenic |
| GTGATCAGACAATTGATGGG+AGG | 0.730068 | 2.4:+56166148 | MS.gene058214:CDS |
| TTTGACTAGAGTATTAGACG+AGG | 0.739476 | 2.4:+56159557 | MS.gene058214:CDS |
| AAAGGAGACCAAAATCACAG+TGG | 0.758419 | 2.4:+56163652 | MS.gene058214:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 56154326 | 56166600 | 56154326 | ID=MS.gene058214 |
| chr2.4 | mRNA | 56154326 | 56166600 | 56154326 | ID=MS.gene058214.t1;Parent=MS.gene058214 |
| chr2.4 | exon | 56154326 | 56154355 | 56154326 | ID=MS.gene058214.t1.exon1;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56154326 | 56154355 | 56154326 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56154589 | 56154669 | 56154589 | ID=MS.gene058214.t1.exon2;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56154589 | 56154669 | 56154589 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56155084 | 56155183 | 56155084 | ID=MS.gene058214.t1.exon3;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56155084 | 56155183 | 56155084 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56155365 | 56155449 | 56155365 | ID=MS.gene058214.t1.exon4;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56155365 | 56155449 | 56155365 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56155553 | 56155602 | 56155553 | ID=MS.gene058214.t1.exon5;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56155553 | 56155602 | 56155553 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56156238 | 56156317 | 56156238 | ID=MS.gene058214.t1.exon6;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56156238 | 56156317 | 56156238 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56157865 | 56157924 | 56157865 | ID=MS.gene058214.t1.exon7;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56157865 | 56157924 | 56157865 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56158763 | 56158862 | 56158763 | ID=MS.gene058214.t1.exon8;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56158763 | 56158862 | 56158763 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56158956 | 56159033 | 56158956 | ID=MS.gene058214.t1.exon9;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56158956 | 56159033 | 56158956 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56159155 | 56159222 | 56159155 | ID=MS.gene058214.t1.exon10;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56159155 | 56159222 | 56159155 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56159329 | 56159397 | 56159329 | ID=MS.gene058214.t1.exon11;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56159329 | 56159397 | 56159329 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56159549 | 56159626 | 56159549 | ID=MS.gene058214.t1.exon12;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56159549 | 56159626 | 56159549 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56159715 | 56159810 | 56159715 | ID=MS.gene058214.t1.exon13;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56159715 | 56159810 | 56159715 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56161820 | 56161890 | 56161820 | ID=MS.gene058214.t1.exon14;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56161820 | 56161890 | 56161820 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56162462 | 56162539 | 56162462 | ID=MS.gene058214.t1.exon15;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56162462 | 56162539 | 56162462 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56162643 | 56162736 | 56162643 | ID=MS.gene058214.t1.exon16;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56162643 | 56162736 | 56162643 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56163194 | 56163292 | 56163194 | ID=MS.gene058214.t1.exon17;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56163194 | 56163292 | 56163194 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56163532 | 56163749 | 56163532 | ID=MS.gene058214.t1.exon18;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56163532 | 56163749 | 56163532 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56163839 | 56163953 | 56163839 | ID=MS.gene058214.t1.exon19;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56163839 | 56163953 | 56163839 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56164825 | 56164956 | 56164825 | ID=MS.gene058214.t1.exon20;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56164825 | 56164956 | 56164825 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56165262 | 56165369 | 56165262 | ID=MS.gene058214.t1.exon21;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56165262 | 56165369 | 56165262 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56165474 | 56165580 | 56165474 | ID=MS.gene058214.t1.exon22;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56165474 | 56165580 | 56165474 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56165665 | 56165778 | 56165665 | ID=MS.gene058214.t1.exon23;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56165665 | 56165778 | 56165665 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56165864 | 56166390 | 56165864 | ID=MS.gene058214.t1.exon24;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56165864 | 56166390 | 56165864 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| chr2.4 | exon | 56166545 | 56166600 | 56166545 | ID=MS.gene058214.t1.exon25;Parent=MS.gene058214.t1 |
| chr2.4 | CDS | 56166545 | 56166600 | 56166545 | ID=cds.MS.gene058214.t1;Parent=MS.gene058214.t1 |
| Gene Sequence |
| Protein sequence |
