Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63757.t1 | RHN74953.1 | 98.9 | 568 | 6 | 0 | 1 | 568 | 1 | 568 | 0.00E+00 | 1124 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63757.t1 | Q9FZ49 | 72.7 | 571 | 152 | 2 | 1 | 568 | 1 | 570 | 1.4e-248 | 860.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63757.t1 | A0A396JF94 | 98.9 | 568 | 6 | 0 | 1 | 568 | 1 | 568 | 0.0e+00 | 1124.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63757 | MS.gene50052 | PPI |
| MS.gene003786 | MS.gene63757 | PPI |
| MS.gene63757 | MS.gene014312 | PPI |
| MS.gene63757 | MS.gene069988 | PPI |
| MS.gene014310 | MS.gene63757 | PPI |
| MS.gene63757 | MS.gene45709 | PPI |
| MS.gene63757 | MS.gene064868 | PPI |
| MS.gene63757 | MS.gene66827 | PPI |
| MS.gene056676 | MS.gene63757 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63757.t1 | MTR_2g076680 | 98.768 | 568 | 7 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63757.t1 | AT1G16900 | 72.855 | 571 | 151 | 2 | 1 | 568 | 1 | 570 | 0.0 | 838 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGTTGCTGTTTCTGCTAT+TGG | 0.219264 | 2.1:-23270338 | MS.gene63757:CDS |
| AAATTCAAACAGGCATTTAT+TGG | 0.223315 | 2.1:-23270248 | MS.gene63757:CDS |
| TGTTCTTGCTATGCTGTTCT+TGG | 0.229117 | 2.1:-23269715 | MS.gene63757:CDS |
| GGCGGTGAAAGTCATCTTTA+TGG | 0.234735 | 2.1:-23269795 | MS.gene63757:CDS |
| TATGCTGTGAGATTCTTTCT+TGG | 0.247470 | 2.1:-23270786 | MS.gene63757:CDS |
| ACTATAACTATTATGGAAAA+TGG | 0.250286 | 2.1:-23269860 | MS.gene63757:CDS |
| CGAACTTGTCCCACAAAATC+TGG | 0.277414 | 2.1:+23267444 | None:intergenic |
| AACCACCGGCCTCAGAAATT+TGG | 0.286042 | 2.1:+23268196 | None:intergenic |
| TGATATCTCCTTTATACATT+TGG | 0.294318 | 2.1:-23269644 | MS.gene63757:CDS |
| CACCTAGGGTAGAATTAAAT+TGG | 0.295021 | 2.1:+23267385 | None:intergenic |
| GTTACTGACTATAACTATTA+TGG | 0.296108 | 2.1:-23269867 | MS.gene63757:CDS |
| TGGCTGGCCATTCTCAATCT+TGG | 0.306441 | 2.1:-23270306 | MS.gene63757:CDS |
| CGATGGATTGATGATGGTTT+TGG | 0.307314 | 2.1:-23267423 | MS.gene63757:CDS |
| CCACTATTTCATGAAATAAA+AGG | 0.307405 | 2.1:+23270953 | None:intergenic |
| GCTTTCAAACTTGGGAATAT+AGG | 0.312921 | 2.1:-23272814 | MS.gene63757:intron |
| TTCATCTTTACCGTCCGATT+TGG | 0.317857 | 2.1:+23272970 | None:intergenic |
| GTAAAGATGAAGGGTTAAAA+TGG | 0.322168 | 2.1:-23272958 | MS.gene63757:CDS |
| GTATGCAATCTCTCTTGCTT+CGG | 0.332002 | 2.1:-23270390 | MS.gene63757:CDS |
| AAAATCTTGTAAATTTCAAT+AGG | 0.342076 | 2.1:+23268110 | None:intergenic |
| ATGTTCTTGTTGTTAAAGTA+TGG | 0.342295 | 2.1:+23267345 | None:intergenic |
| TATTGCTGCATTACCATATC+TGG | 0.343713 | 2.1:-23265787 | MS.gene63757:CDS |
| TATGCAATCTCTCTTGCTTC+GGG | 0.358298 | 2.1:-23270389 | MS.gene63757:CDS |
| TCTGCTATTGGTGTGATACT+TGG | 0.358995 | 2.1:-23270326 | MS.gene63757:CDS |
| GTAGCTATTTCAAGAAAGTA+TGG | 0.360159 | 2.1:-23270729 | MS.gene63757:CDS |
| CCGGTTAAATTGAATCATTT+CGG | 0.360567 | 2.1:+23265666 | None:intergenic |
| CGACCAGCTTTGTGGGTGTT+TGG | 0.360996 | 2.1:-23270928 | MS.gene63757:CDS |
| ATAAAACTGGCTTTCAAACT+TGG | 0.375094 | 2.1:-23272823 | MS.gene63757:CDS |
| GAATATTTCTTCTTAGCAAT+AGG | 0.395061 | 2.1:+23269684 | None:intergenic |
| CAGGTTCTGTACTTTGTGTT+GGG | 0.400534 | 2.1:-23267503 | MS.gene63757:CDS |
| ACACAAATAAGTGGATATAC+TGG | 0.407458 | 2.1:+23268400 | None:intergenic |
| TGAGAGCGTCTCCGTCTTGT+TGG | 0.411971 | 2.1:+23273049 | None:intergenic |
| CCGAACCTTTCTTCTTTATG+TGG | 0.413167 | 2.1:+23269600 | None:intergenic |
| AAAGCCAGCCAAATGTATAA+AGG | 0.418152 | 2.1:+23269636 | None:intergenic |
| AGCTTTCACCAGCTTTGTAT+AGG | 0.420983 | 2.1:-23265758 | MS.gene63757:CDS |
| GCAGGTTCTGTACTTTGTGT+TGG | 0.422829 | 2.1:-23267504 | MS.gene63757:intron |
| GTTCTTGCTATGCTGTTCTT+GGG | 0.423743 | 2.1:-23269714 | MS.gene63757:CDS |
| TACTTGTCACGGAAAAGATC+AGG | 0.428030 | 2.1:+23268349 | None:intergenic |
| TACTTTGTGTTGGGAGTGAA+TGG | 0.433620 | 2.1:-23267494 | MS.gene63757:CDS |
| CAAGTTCGATGGATTGATGA+TGG | 0.437641 | 2.1:-23267429 | MS.gene63757:CDS |
| ATCTCCTTTATACATTTGGC+TGG | 0.441016 | 2.1:-23269640 | MS.gene63757:CDS |
| TGTAAATTTCAATAGGAGCT+TGG | 0.448876 | 2.1:+23268117 | None:intergenic |
| CTCTCAGCCGTCGGATCCAC+CGG | 0.449738 | 2.1:-23273032 | MS.gene63757:CDS |
| GCAGTTCACAGTTTGCTCTT+CGG | 0.450028 | 2.1:-23270987 | MS.gene63757:intron |
| TCTATATATAAAATTCAAAC+AGG | 0.456683 | 2.1:-23270258 | MS.gene63757:CDS |
| GAAAGCTCCCTATCCAGATA+TGG | 0.459908 | 2.1:+23265774 | None:intergenic |
| TAGTGGCTCGACCAGCTTTG+TGG | 0.464263 | 2.1:-23270936 | MS.gene63757:CDS |
| ATAAGTCGCTTCCACGAGTC+AGG | 0.467509 | 2.1:+23265902 | None:intergenic |
| GATATCACAATAAGTAGGTC+TGG | 0.468052 | 2.1:+23269660 | None:intergenic |
| GCGGTGAAAGTCATCTTTAT+GGG | 0.470541 | 2.1:-23269794 | MS.gene63757:CDS |
| TAAAACTGGCTTTCAAACTT+GGG | 0.471445 | 2.1:-23272822 | MS.gene63757:CDS |
| GCTCGACAAAGCGTCCAAAT+CGG | 0.474342 | 2.1:-23272984 | MS.gene63757:CDS |
| TGCAGCCACATAAAGAAGAA+AGG | 0.475976 | 2.1:-23269605 | MS.gene63757:intron |
| CTGCATTACCATATCTGGAT+AGG | 0.477599 | 2.1:-23265782 | MS.gene63757:CDS |
| TATAGAGAATAAAGTGTCAC+TGG | 0.484919 | 2.1:+23270275 | None:intergenic |
| TAAAGATGAAGGGTTAAAAT+GGG | 0.485417 | 2.1:-23272957 | MS.gene63757:CDS |
| TTCCAATTTAATTCTACCCT+AGG | 0.487869 | 2.1:-23267387 | MS.gene63757:CDS |
| AGTGGCTCGACCAGCTTTGT+GGG | 0.488898 | 2.1:-23270935 | MS.gene63757:CDS |
| GCATACATGGAAAACGAACT+TGG | 0.489829 | 2.1:+23270407 | None:intergenic |
| CTTCTAATATACAACGTAGC+TGG | 0.490932 | 2.1:-23269819 | MS.gene63757:CDS |
| AGCAAGAGAGATTGCATACA+TGG | 0.491027 | 2.1:+23270394 | None:intergenic |
| GTGCTGCAGCAGTCCCACCT+AGG | 0.491314 | 2.1:+23267370 | None:intergenic |
| AAGTGCAGGCATCGATATCA+TGG | 0.494904 | 2.1:+23265956 | None:intergenic |
| AAATCGGACGGTAAAGATGA+AGG | 0.501810 | 2.1:-23272968 | MS.gene63757:CDS |
| CTATTGGTGTGATACTTGGC+TGG | 0.503293 | 2.1:-23270322 | MS.gene63757:CDS |
| TCAAACAGGCATTTATTGGT+GGG | 0.504596 | 2.1:-23270244 | MS.gene63757:CDS |
| TTCAAACAGGCATTTATTGG+TGG | 0.505934 | 2.1:-23270245 | MS.gene63757:CDS |
| AATTTAATTCTACCCTAGGT+GGG | 0.510697 | 2.1:-23267383 | MS.gene63757:CDS |
| TGACACTTCTTTAATAGTGA+AGG | 0.517173 | 2.1:-23268317 | MS.gene63757:intron |
| CAATTTAATTCTACCCTAGG+TGG | 0.522327 | 2.1:-23267384 | MS.gene63757:CDS |
| GAAGCAGCAACACAAATAAG+TGG | 0.523684 | 2.1:+23268391 | None:intergenic |
| CAGCTCGACGAGGAAAGTGC+AGG | 0.528901 | 2.1:+23265942 | None:intergenic |
| TAGGGTAGAATTAAATTGGA+AGG | 0.530698 | 2.1:+23267389 | None:intergenic |
| AGAAAAGCCAAGATTGAGAA+TGG | 0.534930 | 2.1:+23270299 | None:intergenic |
| CAAACAGGCATTTATTGGTG+GGG | 0.542191 | 2.1:-23270243 | MS.gene63757:CDS |
| TGCTGCAGCAGTCCCACCTA+GGG | 0.546607 | 2.1:+23267371 | None:intergenic |
| AAGGAGATATCACAATAAGT+AGG | 0.549912 | 2.1:+23269655 | None:intergenic |
| GATGAAGATGATCGCGCCGG+TGG | 0.549997 | 2.1:+23273016 | None:intergenic |
| TGCATTACCATATCTGGATA+GGG | 0.551101 | 2.1:-23265781 | MS.gene63757:CDS |
| GGTAGCCAAATTTCTGAGGC+CGG | 0.554678 | 2.1:-23268201 | MS.gene63757:CDS |
| TTCTTGTTGTTAAAGTATGG+TGG | 0.556667 | 2.1:+23267348 | None:intergenic |
| TCACCAAACACCCACAAAGC+TGG | 0.559084 | 2.1:+23270925 | None:intergenic |
| TCGCTTCCACGAGTCAGGTA+AGG | 0.561233 | 2.1:+23265907 | None:intergenic |
| TTATAAAGAAGAAAATGAAG+AGG | 0.563612 | 2.1:+23272842 | None:intergenic |
| GAACTTGTCCCACAAAATCT+GGG | 0.564529 | 2.1:+23267445 | None:intergenic |
| CAAATGAATCATACTTGTCA+CGG | 0.566373 | 2.1:+23268338 | None:intergenic |
| GATCGCGCCGGTGGATCCGA+CGG | 0.567878 | 2.1:+23273025 | None:intergenic |
| AGAAAATGTACGAGCATGAG+AGG | 0.570665 | 2.1:+23268154 | None:intergenic |
| TAAGTGGATATACTGGATAG+AGG | 0.573634 | 2.1:+23268407 | None:intergenic |
| AATATAATGCTAAGAACCAC+CGG | 0.576125 | 2.1:+23268182 | None:intergenic |
| TCGTCGAGCTGCAGCTAAAG+CGG | 0.577826 | 2.1:-23265930 | MS.gene63757:CDS |
| ATATACAACGTAGCTGGAGG+CGG | 0.584749 | 2.1:-23269813 | MS.gene63757:CDS |
| TATTATTCATGATTGTGATG+AGG | 0.592268 | 2.1:-23272882 | MS.gene63757:CDS |
| AGGGTAGAATTAAATTGGAA+GGG | 0.596270 | 2.1:+23267390 | None:intergenic |
| AATCGGACGGTAAAGATGAA+GGG | 0.602496 | 2.1:-23272967 | MS.gene63757:CDS |
| ACTTGTCACGGAAAAGATCA+GGG | 0.607707 | 2.1:+23268350 | None:intergenic |
| TCTGCTTGATAAACATGCTG+CGG | 0.610372 | 2.1:-23270360 | MS.gene63757:CDS |
| ACGGAGACGCTCTCAGCCGT+CGG | 0.617524 | 2.1:-23273041 | MS.gene63757:CDS |
| AAGCGGCCTTACCTGACTCG+TGG | 0.620605 | 2.1:-23265913 | MS.gene63757:CDS |
| CTAATATACAACGTAGCTGG+AGG | 0.620873 | 2.1:-23269816 | MS.gene63757:CDS |
| AGTCATCTTTATGGGACCGA+AGG | 0.621755 | 2.1:-23269786 | MS.gene63757:CDS |
| GCTTTAGCTGCAGCTCGACG+AGG | 0.634925 | 2.1:+23265932 | None:intergenic |
| CACCATCTGCTACATCGTCG+TGG | 0.637010 | 2.1:+23268081 | None:intergenic |
| GACAAAGCGTCCAAATCGGA+CGG | 0.643344 | 2.1:-23272980 | MS.gene63757:CDS |
| CACCACGACGATGTAGCAGA+TGG | 0.644359 | 2.1:-23268083 | MS.gene63757:intron |
| AGCCAAATTTCTGAGGCCGG+TGG | 0.644696 | 2.1:-23268198 | MS.gene63757:CDS |
| TGCAGGTAGCCAAATTTCTG+AGG | 0.648461 | 2.1:-23268205 | MS.gene63757:intron |
| GCTAGCAAAGAAACAGCCGC+TGG | 0.655782 | 2.1:+23270665 | None:intergenic |
| TAAGATGAAGATGATCGCGC+CGG | 0.674007 | 2.1:+23273013 | None:intergenic |
| TGGAAGCGACTTATCAACAT+GGG | 0.674302 | 2.1:-23265893 | MS.gene63757:CDS |
| GTGGAAGCGACTTATCAACA+TGG | 0.675355 | 2.1:-23265894 | MS.gene63757:CDS |
| GCTATGCTGTGCTTAGCCAG+CGG | 0.680101 | 2.1:-23270681 | MS.gene63757:CDS |
| ATACTTTAACAACAAGAACA+TGG | 0.681934 | 2.1:-23267343 | MS.gene63757:CDS |
| AAGAACAGTCTCAGTGACGA+CGG | 0.685837 | 2.1:+23270755 | None:intergenic |
| ATATATCTCAACCAACAAGA+CGG | 0.693105 | 2.1:-23273060 | MS.gene63757:CDS |
| AAGCGACTTATCAACATGGG+AGG | 0.704337 | 2.1:-23265890 | MS.gene63757:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 23265680 | 23273086 | 23265680 | ID=MS.gene63757 |
| chr2.1 | mRNA | 23265680 | 23273086 | 23265680 | ID=MS.gene63757.t1;Parent=MS.gene63757 |
| chr2.1 | exon | 23272815 | 23273086 | 23272815 | ID=MS.gene63757.t1.exon1;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23272815 | 23273086 | 23272815 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23270918 | 23271005 | 23270918 | ID=MS.gene63757.t1.exon2;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23270918 | 23271005 | 23270918 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23270661 | 23270820 | 23270661 | ID=MS.gene63757.t1.exon3;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23270661 | 23270820 | 23270661 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23270220 | 23270437 | 23270220 | ID=MS.gene63757.t1.exon4;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23270220 | 23270437 | 23270220 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23269606 | 23269901 | 23269606 | ID=MS.gene63757.t1.exon5;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23269606 | 23269901 | 23269606 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23268318 | 23268432 | 23268318 | ID=MS.gene63757.t1.exon6;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23268318 | 23268432 | 23268318 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23268084 | 23268222 | 23268084 | ID=MS.gene63757.t1.exon7;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23268084 | 23268222 | 23268084 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23267326 | 23267522 | 23267326 | ID=MS.gene63757.t1.exon8;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23267326 | 23267522 | 23267326 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23265891 | 23265980 | 23265891 | ID=MS.gene63757.t1.exon9;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23265891 | 23265980 | 23265891 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| chr2.1 | exon | 23265680 | 23265811 | 23265680 | ID=MS.gene63757.t1.exon10;Parent=MS.gene63757.t1 |
| chr2.1 | CDS | 23265680 | 23265811 | 23265680 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
| Gene Sequence |
| Protein sequence |