Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63757.t1 | RHN74953.1 | 98.9 | 568 | 6 | 0 | 1 | 568 | 1 | 568 | 0.00E+00 | 1124 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63757.t1 | Q9FZ49 | 72.7 | 571 | 152 | 2 | 1 | 568 | 1 | 570 | 1.4e-248 | 860.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63757.t1 | A0A396JF94 | 98.9 | 568 | 6 | 0 | 1 | 568 | 1 | 568 | 0.0e+00 | 1124.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene63757 | MS.gene50052 | PPI |
MS.gene003786 | MS.gene63757 | PPI |
MS.gene63757 | MS.gene014312 | PPI |
MS.gene63757 | MS.gene069988 | PPI |
MS.gene014310 | MS.gene63757 | PPI |
MS.gene63757 | MS.gene45709 | PPI |
MS.gene63757 | MS.gene064868 | PPI |
MS.gene63757 | MS.gene66827 | PPI |
MS.gene056676 | MS.gene63757 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63757.t1 | MTR_2g076680 | 98.768 | 568 | 7 | 0 | 1 | 568 | 1 | 568 | 0.0 | 1146 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63757.t1 | AT1G16900 | 72.855 | 571 | 151 | 2 | 1 | 568 | 1 | 570 | 0.0 | 838 |
Find 115 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAGTTGCTGTTTCTGCTAT+TGG | 0.219264 | 2.1:-23270338 | MS.gene63757:CDS |
AAATTCAAACAGGCATTTAT+TGG | 0.223315 | 2.1:-23270248 | MS.gene63757:CDS |
TGTTCTTGCTATGCTGTTCT+TGG | 0.229117 | 2.1:-23269715 | MS.gene63757:CDS |
GGCGGTGAAAGTCATCTTTA+TGG | 0.234735 | 2.1:-23269795 | MS.gene63757:CDS |
TATGCTGTGAGATTCTTTCT+TGG | 0.247470 | 2.1:-23270786 | MS.gene63757:CDS |
ACTATAACTATTATGGAAAA+TGG | 0.250286 | 2.1:-23269860 | MS.gene63757:CDS |
CGAACTTGTCCCACAAAATC+TGG | 0.277414 | 2.1:+23267444 | None:intergenic |
AACCACCGGCCTCAGAAATT+TGG | 0.286042 | 2.1:+23268196 | None:intergenic |
TGATATCTCCTTTATACATT+TGG | 0.294318 | 2.1:-23269644 | MS.gene63757:CDS |
CACCTAGGGTAGAATTAAAT+TGG | 0.295021 | 2.1:+23267385 | None:intergenic |
GTTACTGACTATAACTATTA+TGG | 0.296108 | 2.1:-23269867 | MS.gene63757:CDS |
TGGCTGGCCATTCTCAATCT+TGG | 0.306441 | 2.1:-23270306 | MS.gene63757:CDS |
CGATGGATTGATGATGGTTT+TGG | 0.307314 | 2.1:-23267423 | MS.gene63757:CDS |
CCACTATTTCATGAAATAAA+AGG | 0.307405 | 2.1:+23270953 | None:intergenic |
GCTTTCAAACTTGGGAATAT+AGG | 0.312921 | 2.1:-23272814 | MS.gene63757:intron |
TTCATCTTTACCGTCCGATT+TGG | 0.317857 | 2.1:+23272970 | None:intergenic |
GTAAAGATGAAGGGTTAAAA+TGG | 0.322168 | 2.1:-23272958 | MS.gene63757:CDS |
GTATGCAATCTCTCTTGCTT+CGG | 0.332002 | 2.1:-23270390 | MS.gene63757:CDS |
AAAATCTTGTAAATTTCAAT+AGG | 0.342076 | 2.1:+23268110 | None:intergenic |
ATGTTCTTGTTGTTAAAGTA+TGG | 0.342295 | 2.1:+23267345 | None:intergenic |
TATTGCTGCATTACCATATC+TGG | 0.343713 | 2.1:-23265787 | MS.gene63757:CDS |
TATGCAATCTCTCTTGCTTC+GGG | 0.358298 | 2.1:-23270389 | MS.gene63757:CDS |
TCTGCTATTGGTGTGATACT+TGG | 0.358995 | 2.1:-23270326 | MS.gene63757:CDS |
GTAGCTATTTCAAGAAAGTA+TGG | 0.360159 | 2.1:-23270729 | MS.gene63757:CDS |
CCGGTTAAATTGAATCATTT+CGG | 0.360567 | 2.1:+23265666 | None:intergenic |
CGACCAGCTTTGTGGGTGTT+TGG | 0.360996 | 2.1:-23270928 | MS.gene63757:CDS |
ATAAAACTGGCTTTCAAACT+TGG | 0.375094 | 2.1:-23272823 | MS.gene63757:CDS |
GAATATTTCTTCTTAGCAAT+AGG | 0.395061 | 2.1:+23269684 | None:intergenic |
CAGGTTCTGTACTTTGTGTT+GGG | 0.400534 | 2.1:-23267503 | MS.gene63757:CDS |
ACACAAATAAGTGGATATAC+TGG | 0.407458 | 2.1:+23268400 | None:intergenic |
TGAGAGCGTCTCCGTCTTGT+TGG | 0.411971 | 2.1:+23273049 | None:intergenic |
CCGAACCTTTCTTCTTTATG+TGG | 0.413167 | 2.1:+23269600 | None:intergenic |
AAAGCCAGCCAAATGTATAA+AGG | 0.418152 | 2.1:+23269636 | None:intergenic |
AGCTTTCACCAGCTTTGTAT+AGG | 0.420983 | 2.1:-23265758 | MS.gene63757:CDS |
GCAGGTTCTGTACTTTGTGT+TGG | 0.422829 | 2.1:-23267504 | MS.gene63757:intron |
GTTCTTGCTATGCTGTTCTT+GGG | 0.423743 | 2.1:-23269714 | MS.gene63757:CDS |
TACTTGTCACGGAAAAGATC+AGG | 0.428030 | 2.1:+23268349 | None:intergenic |
TACTTTGTGTTGGGAGTGAA+TGG | 0.433620 | 2.1:-23267494 | MS.gene63757:CDS |
CAAGTTCGATGGATTGATGA+TGG | 0.437641 | 2.1:-23267429 | MS.gene63757:CDS |
ATCTCCTTTATACATTTGGC+TGG | 0.441016 | 2.1:-23269640 | MS.gene63757:CDS |
TGTAAATTTCAATAGGAGCT+TGG | 0.448876 | 2.1:+23268117 | None:intergenic |
CTCTCAGCCGTCGGATCCAC+CGG | 0.449738 | 2.1:-23273032 | MS.gene63757:CDS |
GCAGTTCACAGTTTGCTCTT+CGG | 0.450028 | 2.1:-23270987 | MS.gene63757:intron |
TCTATATATAAAATTCAAAC+AGG | 0.456683 | 2.1:-23270258 | MS.gene63757:CDS |
GAAAGCTCCCTATCCAGATA+TGG | 0.459908 | 2.1:+23265774 | None:intergenic |
TAGTGGCTCGACCAGCTTTG+TGG | 0.464263 | 2.1:-23270936 | MS.gene63757:CDS |
ATAAGTCGCTTCCACGAGTC+AGG | 0.467509 | 2.1:+23265902 | None:intergenic |
GATATCACAATAAGTAGGTC+TGG | 0.468052 | 2.1:+23269660 | None:intergenic |
GCGGTGAAAGTCATCTTTAT+GGG | 0.470541 | 2.1:-23269794 | MS.gene63757:CDS |
TAAAACTGGCTTTCAAACTT+GGG | 0.471445 | 2.1:-23272822 | MS.gene63757:CDS |
GCTCGACAAAGCGTCCAAAT+CGG | 0.474342 | 2.1:-23272984 | MS.gene63757:CDS |
TGCAGCCACATAAAGAAGAA+AGG | 0.475976 | 2.1:-23269605 | MS.gene63757:intron |
CTGCATTACCATATCTGGAT+AGG | 0.477599 | 2.1:-23265782 | MS.gene63757:CDS |
TATAGAGAATAAAGTGTCAC+TGG | 0.484919 | 2.1:+23270275 | None:intergenic |
TAAAGATGAAGGGTTAAAAT+GGG | 0.485417 | 2.1:-23272957 | MS.gene63757:CDS |
TTCCAATTTAATTCTACCCT+AGG | 0.487869 | 2.1:-23267387 | MS.gene63757:CDS |
AGTGGCTCGACCAGCTTTGT+GGG | 0.488898 | 2.1:-23270935 | MS.gene63757:CDS |
GCATACATGGAAAACGAACT+TGG | 0.489829 | 2.1:+23270407 | None:intergenic |
CTTCTAATATACAACGTAGC+TGG | 0.490932 | 2.1:-23269819 | MS.gene63757:CDS |
AGCAAGAGAGATTGCATACA+TGG | 0.491027 | 2.1:+23270394 | None:intergenic |
GTGCTGCAGCAGTCCCACCT+AGG | 0.491314 | 2.1:+23267370 | None:intergenic |
AAGTGCAGGCATCGATATCA+TGG | 0.494904 | 2.1:+23265956 | None:intergenic |
AAATCGGACGGTAAAGATGA+AGG | 0.501810 | 2.1:-23272968 | MS.gene63757:CDS |
CTATTGGTGTGATACTTGGC+TGG | 0.503293 | 2.1:-23270322 | MS.gene63757:CDS |
TCAAACAGGCATTTATTGGT+GGG | 0.504596 | 2.1:-23270244 | MS.gene63757:CDS |
TTCAAACAGGCATTTATTGG+TGG | 0.505934 | 2.1:-23270245 | MS.gene63757:CDS |
AATTTAATTCTACCCTAGGT+GGG | 0.510697 | 2.1:-23267383 | MS.gene63757:CDS |
TGACACTTCTTTAATAGTGA+AGG | 0.517173 | 2.1:-23268317 | MS.gene63757:intron |
CAATTTAATTCTACCCTAGG+TGG | 0.522327 | 2.1:-23267384 | MS.gene63757:CDS |
GAAGCAGCAACACAAATAAG+TGG | 0.523684 | 2.1:+23268391 | None:intergenic |
CAGCTCGACGAGGAAAGTGC+AGG | 0.528901 | 2.1:+23265942 | None:intergenic |
TAGGGTAGAATTAAATTGGA+AGG | 0.530698 | 2.1:+23267389 | None:intergenic |
AGAAAAGCCAAGATTGAGAA+TGG | 0.534930 | 2.1:+23270299 | None:intergenic |
CAAACAGGCATTTATTGGTG+GGG | 0.542191 | 2.1:-23270243 | MS.gene63757:CDS |
TGCTGCAGCAGTCCCACCTA+GGG | 0.546607 | 2.1:+23267371 | None:intergenic |
AAGGAGATATCACAATAAGT+AGG | 0.549912 | 2.1:+23269655 | None:intergenic |
GATGAAGATGATCGCGCCGG+TGG | 0.549997 | 2.1:+23273016 | None:intergenic |
TGCATTACCATATCTGGATA+GGG | 0.551101 | 2.1:-23265781 | MS.gene63757:CDS |
GGTAGCCAAATTTCTGAGGC+CGG | 0.554678 | 2.1:-23268201 | MS.gene63757:CDS |
TTCTTGTTGTTAAAGTATGG+TGG | 0.556667 | 2.1:+23267348 | None:intergenic |
TCACCAAACACCCACAAAGC+TGG | 0.559084 | 2.1:+23270925 | None:intergenic |
TCGCTTCCACGAGTCAGGTA+AGG | 0.561233 | 2.1:+23265907 | None:intergenic |
TTATAAAGAAGAAAATGAAG+AGG | 0.563612 | 2.1:+23272842 | None:intergenic |
GAACTTGTCCCACAAAATCT+GGG | 0.564529 | 2.1:+23267445 | None:intergenic |
CAAATGAATCATACTTGTCA+CGG | 0.566373 | 2.1:+23268338 | None:intergenic |
GATCGCGCCGGTGGATCCGA+CGG | 0.567878 | 2.1:+23273025 | None:intergenic |
AGAAAATGTACGAGCATGAG+AGG | 0.570665 | 2.1:+23268154 | None:intergenic |
TAAGTGGATATACTGGATAG+AGG | 0.573634 | 2.1:+23268407 | None:intergenic |
AATATAATGCTAAGAACCAC+CGG | 0.576125 | 2.1:+23268182 | None:intergenic |
TCGTCGAGCTGCAGCTAAAG+CGG | 0.577826 | 2.1:-23265930 | MS.gene63757:CDS |
ATATACAACGTAGCTGGAGG+CGG | 0.584749 | 2.1:-23269813 | MS.gene63757:CDS |
TATTATTCATGATTGTGATG+AGG | 0.592268 | 2.1:-23272882 | MS.gene63757:CDS |
AGGGTAGAATTAAATTGGAA+GGG | 0.596270 | 2.1:+23267390 | None:intergenic |
AATCGGACGGTAAAGATGAA+GGG | 0.602496 | 2.1:-23272967 | MS.gene63757:CDS |
ACTTGTCACGGAAAAGATCA+GGG | 0.607707 | 2.1:+23268350 | None:intergenic |
TCTGCTTGATAAACATGCTG+CGG | 0.610372 | 2.1:-23270360 | MS.gene63757:CDS |
ACGGAGACGCTCTCAGCCGT+CGG | 0.617524 | 2.1:-23273041 | MS.gene63757:CDS |
AAGCGGCCTTACCTGACTCG+TGG | 0.620605 | 2.1:-23265913 | MS.gene63757:CDS |
CTAATATACAACGTAGCTGG+AGG | 0.620873 | 2.1:-23269816 | MS.gene63757:CDS |
AGTCATCTTTATGGGACCGA+AGG | 0.621755 | 2.1:-23269786 | MS.gene63757:CDS |
GCTTTAGCTGCAGCTCGACG+AGG | 0.634925 | 2.1:+23265932 | None:intergenic |
CACCATCTGCTACATCGTCG+TGG | 0.637010 | 2.1:+23268081 | None:intergenic |
GACAAAGCGTCCAAATCGGA+CGG | 0.643344 | 2.1:-23272980 | MS.gene63757:CDS |
CACCACGACGATGTAGCAGA+TGG | 0.644359 | 2.1:-23268083 | MS.gene63757:intron |
AGCCAAATTTCTGAGGCCGG+TGG | 0.644696 | 2.1:-23268198 | MS.gene63757:CDS |
TGCAGGTAGCCAAATTTCTG+AGG | 0.648461 | 2.1:-23268205 | MS.gene63757:intron |
GCTAGCAAAGAAACAGCCGC+TGG | 0.655782 | 2.1:+23270665 | None:intergenic |
TAAGATGAAGATGATCGCGC+CGG | 0.674007 | 2.1:+23273013 | None:intergenic |
TGGAAGCGACTTATCAACAT+GGG | 0.674302 | 2.1:-23265893 | MS.gene63757:CDS |
GTGGAAGCGACTTATCAACA+TGG | 0.675355 | 2.1:-23265894 | MS.gene63757:CDS |
GCTATGCTGTGCTTAGCCAG+CGG | 0.680101 | 2.1:-23270681 | MS.gene63757:CDS |
ATACTTTAACAACAAGAACA+TGG | 0.681934 | 2.1:-23267343 | MS.gene63757:CDS |
AAGAACAGTCTCAGTGACGA+CGG | 0.685837 | 2.1:+23270755 | None:intergenic |
ATATATCTCAACCAACAAGA+CGG | 0.693105 | 2.1:-23273060 | MS.gene63757:CDS |
AAGCGACTTATCAACATGGG+AGG | 0.704337 | 2.1:-23265890 | MS.gene63757:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 23265680 | 23273086 | 23265680 | ID=MS.gene63757 |
chr2.1 | mRNA | 23265680 | 23273086 | 23265680 | ID=MS.gene63757.t1;Parent=MS.gene63757 |
chr2.1 | exon | 23272815 | 23273086 | 23272815 | ID=MS.gene63757.t1.exon1;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23272815 | 23273086 | 23272815 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23270918 | 23271005 | 23270918 | ID=MS.gene63757.t1.exon2;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23270918 | 23271005 | 23270918 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23270661 | 23270820 | 23270661 | ID=MS.gene63757.t1.exon3;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23270661 | 23270820 | 23270661 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23270220 | 23270437 | 23270220 | ID=MS.gene63757.t1.exon4;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23270220 | 23270437 | 23270220 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23269606 | 23269901 | 23269606 | ID=MS.gene63757.t1.exon5;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23269606 | 23269901 | 23269606 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23268318 | 23268432 | 23268318 | ID=MS.gene63757.t1.exon6;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23268318 | 23268432 | 23268318 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23268084 | 23268222 | 23268084 | ID=MS.gene63757.t1.exon7;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23268084 | 23268222 | 23268084 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23267326 | 23267522 | 23267326 | ID=MS.gene63757.t1.exon8;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23267326 | 23267522 | 23267326 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23265891 | 23265980 | 23265891 | ID=MS.gene63757.t1.exon9;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23265891 | 23265980 | 23265891 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
chr2.1 | exon | 23265680 | 23265811 | 23265680 | ID=MS.gene63757.t1.exon10;Parent=MS.gene63757.t1 |
chr2.1 | CDS | 23265680 | 23265811 | 23265680 | ID=cds.MS.gene63757.t1;Parent=MS.gene63757.t1 |
Gene Sequence |
Protein sequence |