AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63981

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63981.t1 MTR_1g023660 98.235 340 5 1 1 339 1 340 0.0 698
MS.gene63981.t1 MTR_8g099780 49.425 348 128 10 2 339 3 312 2.49e-103 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63981.t1 AT5G42520 65.084 358 90 15 1 339 1 342 1.56e-149 424
MS.gene63981.t1 AT5G42520 63.966 358 90 15 1 339 1 338 2.57e-145 414
MS.gene63981.t1 AT5G42520 62.543 291 84 11 65 339 1 282 2.46e-116 338
MS.gene63981.t1 AT2G21240 48.830 342 115 7 5 339 8 296 1.23e-99 296
MS.gene63981.t1 AT2G21240 48.830 342 115 7 5 339 8 296 1.23e-99 296
MS.gene63981.t1 AT4G38910 45.266 338 120 7 5 339 8 283 8.62e-93 278
MS.gene63981.t1 AT4G38910 45.253 316 111 6 24 339 5 258 1.61e-86 261
MS.gene63981.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.40e-45 155
MS.gene63981.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.40e-45 155
MS.gene63981.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.40e-45 155
MS.gene63981.t1 AT2G35550 55.932 118 52 0 222 339 154 271 1.96e-45 156
MS.gene63981.t1 AT1G68120 56.075 107 47 0 233 339 163 269 1.31e-43 151
MS.gene63981.t1 AT2G01930 55.455 110 49 0 230 339 174 283 2.14e-43 151
MS.gene63981.t1 AT2G01930 55.455 110 49 0 230 339 174 283 2.14e-43 151
MS.gene63981.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.43e-42 148
MS.gene63981.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.43e-42 148
MS.gene63981.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.43e-42 148
MS.gene63981.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.43e-42 148

Find 89 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGCCCAATGGTCTTTA+AGG 0.149233 1.4:+1176226 None:intergenic
GGTAAACCATTTGCCTAATA+TGG 0.151975 1.4:-1176817 MS.gene63981:CDS
CCATTCAAGCTCTTTGTTGT+TGG 0.281988 1.4:+1176599 None:intergenic
TTGCTGTACAACCACTTTAT+CGG 0.289810 1.4:-1176379 MS.gene63981:CDS
TCTGGCCCTCTCTGAGAAAA+AGG 0.293315 1.4:-1177042 MS.gene63981:CDS
AGTAGTGAGGAAATGATAAA+TGG 0.302982 1.4:-1176573 MS.gene63981:CDS
GATTGACATAATTTGCTTCA+TGG 0.306231 1.4:+1177100 None:intergenic
CTGATGGACGATCGTGAAAA+TGG 0.307285 1.4:-1177322 MS.gene63981:CDS
TAAGAAGAATCACCCATATT+AGG 0.336214 1.4:+1176804 None:intergenic
CTTACTTTCCTTTGGCCGTT+TGG 0.363106 1.4:+1176701 None:intergenic
CAATGGTCTTTAAGGTCAAC+CGG 0.380775 1.4:+1176234 None:intergenic
TTTCCCAACCTCTGAAGAAA+TGG 0.384675 1.4:+1176737 None:intergenic
GAATCAGACTTACTTTCCTT+TGG 0.396516 1.4:+1176693 None:intergenic
CCAACAACAAAGAGCTTGAA+TGG 0.401945 1.4:-1176599 MS.gene63981:CDS
GGCCAGATTTCTTTCTTGAA+TGG 0.411936 1.4:+1177058 None:intergenic
GGAACGGAATAATGCACTTA+TGG 0.418242 1.4:-1176967 MS.gene63981:CDS
CGAGAAAATGCTTTGGCCAA+TGG 0.428561 1.4:-1176912 MS.gene63981:CDS
GTATCGATTTGTACCATGTT+TGG 0.434696 1.4:+1176209 None:intergenic
TTCCCAACCTCTGAAGAAAT+GGG 0.437141 1.4:+1176738 None:intergenic
AGGTTTCCAATCAGCCTTTG+AGG 0.441798 1.4:+1176521 None:intergenic
TATACATCACCTTCCGCAAC+AGG 0.447735 1.4:-1176838 MS.gene63981:CDS
AATCACCCATATTAGGCAAA+TGG 0.448313 1.4:+1176811 None:intergenic
TTGTACCATGTTTGGCCCAA+TGG 0.454297 1.4:+1176217 None:intergenic
TAGCAGCCTCAAAGGCTGAT+TGG 0.454649 1.4:-1176527 MS.gene63981:CDS
AATATGGGTGATTCTTCTTA+CGG 0.455899 1.4:-1176801 MS.gene63981:CDS
AGATCAATATAAATCTGCTC+AGG 0.457509 1.4:-1177287 MS.gene63981:CDS
TTCTGAGACAGTGCTACAAA+TGG 0.466001 1.4:-1176425 MS.gene63981:CDS
GTACAAGAGCATGCTGGTGC+TGG 0.473862 1.4:+1176453 None:intergenic
GCACCAGCATGCTCTTGTAC+TGG 0.474798 1.4:-1176450 MS.gene63981:CDS
CGGTTGACCTTAAAGACCAT+TGG 0.478594 1.4:-1176233 MS.gene63981:CDS
TCTGAGACAGTGCTACAAAT+GGG 0.478630 1.4:-1176424 MS.gene63981:CDS
GTAAACCATTTGCCTAATAT+GGG 0.479892 1.4:-1176816 MS.gene63981:CDS
CAGTGCTACAAATGGGGTAA+TGG 0.484703 1.4:-1176417 MS.gene63981:CDS
TCAGTTTCGAGAAAATGCTT+TGG 0.485734 1.4:-1176919 MS.gene63981:CDS
AGCCATTCAAGAAAGAAATC+TGG 0.489436 1.4:-1177060 MS.gene63981:CDS
CCCCGTGAGATTTGACATCC+TGG 0.492305 1.4:+1176870 None:intergenic
TGATTGGAAACCTCAGGACT+TGG 0.494236 1.4:-1176511 MS.gene63981:CDS
GGCAAATGGTTTACCTGTTG+CGG 0.495581 1.4:+1176825 None:intergenic
TTCCAGCTGTGCCCAACAAA+AGG 0.495805 1.4:-1176347 MS.gene63981:CDS
GAAGCAAATTATGTCAATCA+TGG 0.497300 1.4:-1177096 MS.gene63981:CDS
CTTAGCCGGCTTGCAGCTGA+AGG 0.500276 1.4:-1176273 MS.gene63981:CDS
TTGAATCATCGTATGCAACT+TGG 0.503216 1.4:+1176481 None:intergenic
GACATAATTTGCTTCATGGA+AGG 0.504898 1.4:+1177104 None:intergenic
ATATAAATCTGCTCAGGGAC+AGG 0.509112 1.4:-1177281 MS.gene63981:intron
CTTTCAATAAACTACTTAGC+CGG 0.514461 1.4:-1176287 MS.gene63981:CDS
TTTGGCCGTTTGGCACGCCT+AGG 0.515774 1.4:+1176711 None:intergenic
TTGTTGGGCACAGCTGGAAG+TGG 0.517836 1.4:+1176351 None:intergenic
GGTATGTCATCATGCCCTCC+AGG 0.518820 1.4:-1176888 MS.gene63981:CDS
GGTTGACCTTAAAGACCATT+GGG 0.521688 1.4:-1176232 MS.gene63981:CDS
CAAGCAGTTAGCAGCCTCAA+AGG 0.533010 1.4:-1176535 MS.gene63981:CDS
AAAGGCTGATTGGAAACCTC+AGG 0.538629 1.4:-1176517 MS.gene63981:CDS
AACCACCTAGGCGTGCCAAA+CGG 0.540428 1.4:-1176716 MS.gene63981:CDS
CAATTGCAGTATCTCGCTGC+AGG 0.542654 1.4:+1176991 None:intergenic
ACAAATGGGGTAATGGAGGT+TGG 0.545815 1.4:-1176410 MS.gene63981:CDS
ATCTAGAAAAGTCAAGAAAG+AGG 0.546447 1.4:-1176649 MS.gene63981:CDS
GGCCGTTTGGCACGCCTAGG+TGG 0.547084 1.4:+1176714 None:intergenic
TCCAGGATGTCAAATCTCAC+GGG 0.552910 1.4:-1176871 MS.gene63981:CDS
CTCCAGGATGTCAAATCTCA+CGG 0.563255 1.4:-1176872 MS.gene63981:CDS
GCATGATGACATACCACCAT+TGG 0.567052 1.4:+1176896 None:intergenic
TTTGCTTCATGGAAGGATGC+TGG 0.583298 1.4:+1177111 None:intergenic
TGGTTCAATGCCAAGTCCTG+AGG 0.592965 1.4:+1176501 None:intergenic
AGAGCATGCTGGTGCTGGCA+TGG 0.596415 1.4:+1176458 None:intergenic
CCCAACCTCTGAAGAAATGG+GGG 0.597363 1.4:+1176740 None:intergenic
GCTTGAATGGAAGAGTAGTG+AGG 0.599481 1.4:-1176586 MS.gene63981:CDS
AAAAGGCATGCTCGAGTAGG+TGG 0.599819 1.4:-1176330 MS.gene63981:CDS
TAGGCGTGCCAAACGGCCAA+AGG 0.600212 1.4:-1176709 MS.gene63981:CDS
CATGCCCTTCAGCTGCAAGC+CGG 0.601437 1.4:+1176268 None:intergenic
AAAGACCATTGGGCCAAACA+TGG 0.604624 1.4:-1176222 MS.gene63981:CDS
AAGTGGATATACCGATAAAG+TGG 0.604637 1.4:+1176368 None:intergenic
TCTAGAAAAGTCAAGAAAGA+GGG 0.605111 1.4:-1176648 MS.gene63981:CDS
AATGGTTTACCTGTTGCGGA+AGG 0.606017 1.4:+1176829 None:intergenic
GAGATACTGCAATTGCGGAA+CGG 0.606489 1.4:-1176983 MS.gene63981:CDS
TGCTACAAATGGGGTAATGG+AGG 0.606890 1.4:-1176414 MS.gene63981:CDS
TCCCAACCTCTGAAGAAATG+GGG 0.610433 1.4:+1176739 None:intergenic
GATCAATATAAATCTGCTCA+GGG 0.611740 1.4:-1177286 MS.gene63981:CDS
GCAGCGAGATACTGCAATTG+CGG 0.613903 1.4:-1176988 MS.gene63981:CDS
GAAAATGCTTTGGCCAATGG+TGG 0.615877 1.4:-1176909 MS.gene63981:CDS
CAGAGGTTGGGAAACCACCT+AGG 0.616912 1.4:-1176728 MS.gene63981:CDS
AGCACTTGCAGAACGTGACA+TGG 0.620297 1.4:-1177018 MS.gene63981:CDS
TGGACGATCGTGAAAATGGA+AGG 0.626784 1.4:-1177318 MS.gene63981:CDS
TTAGCCGGCTTGCAGCTGAA+GGG 0.630246 1.4:-1176272 MS.gene63981:CDS
CTGAGACAGTGCTACAAATG+GGG 0.642920 1.4:-1176423 MS.gene63981:CDS
AGGGCATGATCTCTCACACC+CGG 0.643910 1.4:-1176253 MS.gene63981:CDS
ACACCAGTACAAGAGCATGC+TGG 0.644328 1.4:+1176447 None:intergenic
GTGAGATTTGACATCCTGGA+GGG 0.655568 1.4:+1176874 None:intergenic
AACAAAAGGCATGCTCGAGT+AGG 0.658830 1.4:-1176333 MS.gene63981:CDS
CCAGGATGTCAAATCTCACG+GGG 0.670697 1.4:-1176870 MS.gene63981:CDS
AATGGTCTTTAAGGTCAACC+GGG 0.672212 1.4:+1176235 None:intergenic
CGTGAGATTTGACATCCTGG+AGG 0.739694 1.4:+1176873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTGACTTTTCTAGATTT+TGG + chr1.4:1176862-1176881 None:intergenic 25.0%
!!! TTAAATTTATTTCTGAGCAG+AGG + chr1.4:1176271-1176290 None:intergenic 25.0%
AATATGGGTGATTCTTCTTA+CGG - chr1.4:1176712-1176731 MS.gene63981:CDS 30.0%
AGATCAATATAAATCTGCTC+AGG - chr1.4:1176226-1176245 MS.gene63981:CDS 30.0%
AGTAGTGAGGAAATGATAAA+TGG - chr1.4:1176940-1176959 MS.gene63981:CDS 30.0%
ATCTAGAAAAGTCAAGAAAG+AGG - chr1.4:1176864-1176883 MS.gene63981:CDS 30.0%
CTTTCAATAAACTACTTAGC+CGG - chr1.4:1177226-1177245 MS.gene63981:intron 30.0%
GAAGCAAATTATGTCAATCA+TGG - chr1.4:1176417-1176436 MS.gene63981:CDS 30.0%
GATCAATATAAATCTGCTCA+GGG - chr1.4:1176227-1176246 MS.gene63981:CDS 30.0%
GTAAACCATTTGCCTAATAT+GGG - chr1.4:1176697-1176716 MS.gene63981:CDS 30.0%
TAAGAAGAATCACCCATATT+AGG + chr1.4:1176712-1176731 None:intergenic 30.0%
TCTAGAAAAGTCAAGAAAGA+GGG - chr1.4:1176865-1176884 MS.gene63981:CDS 30.0%
!! GATTGACATAATTTGCTTCA+TGG + chr1.4:1176416-1176435 None:intergenic 30.0%
!! TCTAAAAATTGCTTTTGCAG+TGG - chr1.4:1176362-1176381 MS.gene63981:CDS 30.0%
AAGTGGATATACCGATAAAG+TGG + chr1.4:1177148-1177167 None:intergenic 35.0%
AATCACCCATATTAGGCAAA+TGG + chr1.4:1176705-1176724 None:intergenic 35.0%
AGCCATTCAAGAAAGAAATC+TGG - chr1.4:1176453-1176472 MS.gene63981:CDS 35.0%
AGTGCTGCATATACCTAAAA+GGG - chr1.4:1176318-1176337 MS.gene63981:CDS 35.0%
GAATCAGACTTACTTTCCTT+TGG + chr1.4:1176823-1176842 None:intergenic 35.0%
GGTAAACCATTTGCCTAATA+TGG - chr1.4:1176696-1176715 MS.gene63981:CDS 35.0%
TCAGTTTCGAGAAAATGCTT+TGG - chr1.4:1176594-1176613 MS.gene63981:CDS 35.0%
TTGAATCATCGTATGCAACT+TGG + chr1.4:1177035-1177054 None:intergenic 35.0%
TTGCTGTACAACCACTTTAT+CGG - chr1.4:1177134-1177153 MS.gene63981:CDS 35.0%
! AAGCATTTTCTCGAAACTGA+AGG + chr1.4:1176594-1176613 None:intergenic 35.0%
! AAGTGCTGCATATACCTAAA+AGG - chr1.4:1176317-1176336 MS.gene63981:CDS 35.0%
! AGCATTTTCTCGAAACTGAA+GGG + chr1.4:1176593-1176612 None:intergenic 35.0%
!! GACATAATTTGCTTCATGGA+AGG + chr1.4:1176412-1176431 None:intergenic 35.0%
!! GTATCGATTTGTACCATGTT+TGG + chr1.4:1177307-1177326 None:intergenic 35.0%
!!! GATTTTGGAGTCTTCTTGTT+AGG + chr1.4:1176847-1176866 None:intergenic 35.0%
ATATAAATCTGCTCAGGGAC+AGG - chr1.4:1176232-1176251 MS.gene63981:CDS 40.0%
CCAACAACAAAGAGCTTGAA+TGG - chr1.4:1176914-1176933 MS.gene63981:CDS 40.0%
GGAACGGAATAATGCACTTA+TGG - chr1.4:1176546-1176565 MS.gene63981:CDS 40.0%
GGCCAGATTTCTTTCTTGAA+TGG + chr1.4:1176458-1176477 None:intergenic 40.0%
GGTTGACCTTAAAGACCATT+GGG - chr1.4:1177281-1177300 MS.gene63981:intron 40.0%
GTAGGTGGTAGAAAAATGAG+TGG - chr1.4:1177198-1177217 MS.gene63981:intron 40.0%
! CCATTCAAGCTCTTTGTTGT+TGG + chr1.4:1176917-1176936 None:intergenic 40.0%
! TCTGAGACAGTGCTACAAAT+GGG - chr1.4:1177089-1177108 MS.gene63981:CDS 40.0%
! TTCCCAACCTCTGAAGAAAT+GGG + chr1.4:1176778-1176797 None:intergenic 40.0%
! TTTCCCAACCTCTGAAGAAA+TGG + chr1.4:1176779-1176798 None:intergenic 40.0%
!! AATGGTCTTTAAGGTCAACC+GGG + chr1.4:1177281-1177300 None:intergenic 40.0%
!! CAATGGTCTTTAAGGTCAAC+CGG + chr1.4:1177282-1177301 None:intergenic 40.0%
!! TTCTGAGACAGTGCTACAAA+TGG - chr1.4:1177088-1177107 MS.gene63981:CDS 40.0%
!!! AGTAGAGAAAGCACCCTTTT+AGG + chr1.4:1176334-1176353 None:intergenic 40.0%
AAAGACCATTGGGCCAAACA+TGG - chr1.4:1177291-1177310 MS.gene63981:CDS 45.0%
AAAGGCTGATTGGAAACCTC+AGG - chr1.4:1176996-1177015 MS.gene63981:CDS 45.0%
AATGGTTTACCTGTTGCGGA+AGG + chr1.4:1176687-1176706 None:intergenic 45.0%
AGGTTTCCAATCAGCCTTTG+AGG + chr1.4:1176995-1177014 None:intergenic 45.0%
CAGTGCTACAAATGGGGTAA+TGG - chr1.4:1177096-1177115 MS.gene63981:CDS 45.0%
CGAGAAAATGCTTTGGCCAA+TGG - chr1.4:1176601-1176620 MS.gene63981:CDS 45.0%
CGGTTGACCTTAAAGACCAT+TGG - chr1.4:1177280-1177299 MS.gene63981:intron 45.0%
CTCCAGGATGTCAAATCTCA+CGG - chr1.4:1176641-1176660 MS.gene63981:CDS 45.0%
CTGAGACAGTGCTACAAATG+GGG - chr1.4:1177090-1177109 MS.gene63981:CDS 45.0%
CTTACTTTCCTTTGGCCGTT+TGG + chr1.4:1176815-1176834 None:intergenic 45.0%
GAAAATGCTTTGGCCAATGG+TGG - chr1.4:1176604-1176623 MS.gene63981:CDS 45.0%
GAGATACTGCAATTGCGGAA+CGG - chr1.4:1176530-1176549 MS.gene63981:CDS 45.0%
GCATGATGACATACCACCAT+TGG + chr1.4:1176620-1176639 None:intergenic 45.0%
GCTTGAATGGAAGAGTAGTG+AGG - chr1.4:1176927-1176946 MS.gene63981:CDS 45.0%
GGCAAATGGTTTACCTGTTG+CGG + chr1.4:1176691-1176710 None:intergenic 45.0%
GTGAGATTTGACATCCTGGA+GGG + chr1.4:1176642-1176661 None:intergenic 45.0%
GTTTGGCCCAATGGTCTTTA+AGG + chr1.4:1177290-1177309 None:intergenic 45.0%
TATACATCACCTTCCGCAAC+AGG - chr1.4:1176675-1176694 MS.gene63981:CDS 45.0%
TCCAGGATGTCAAATCTCAC+GGG - chr1.4:1176642-1176661 MS.gene63981:CDS 45.0%
TGATTGGAAACCTCAGGACT+TGG - chr1.4:1177002-1177021 MS.gene63981:CDS 45.0%
TGGACGATCGTGAAAATGGA+AGG - chr1.4:1176195-1176214 MS.gene63981:CDS 45.0%
TTGTACCATGTTTGGCCCAA+TGG + chr1.4:1177299-1177318 None:intergenic 45.0%
TTTGCTTCATGGAAGGATGC+TGG + chr1.4:1176405-1176424 None:intergenic 45.0%
! AACAAAAGGCATGCTCGAGT+AGG - chr1.4:1177180-1177199 MS.gene63981:intron 45.0%
! ACTCGAGCATGCCTTTTGTT+GGG + chr1.4:1177180-1177199 None:intergenic 45.0%
! TACTCGAGCATGCCTTTTGT+TGG + chr1.4:1177181-1177200 None:intergenic 45.0%
! TCCCAACCTCTGAAGAAATG+GGG + chr1.4:1176777-1176796 None:intergenic 45.0%
! TGCTACAAATGGGGTAATGG+AGG - chr1.4:1177099-1177118 MS.gene63981:CDS 45.0%
! TGCTGCCTTTTTCTCAGAGA+GGG + chr1.4:1176479-1176498 None:intergenic 45.0%
!! ACAAATGGGGTAATGGAGGT+TGG - chr1.4:1177103-1177122 MS.gene63981:CDS 45.0%
AGCACTTGCAGAACGTGACA+TGG - chr1.4:1176495-1176514 MS.gene63981:CDS 50.0%
CAAGCAGTTAGCAGCCTCAA+AGG - chr1.4:1176978-1176997 MS.gene63981:CDS 50.0%
CAATTGCAGTATCTCGCTGC+AGG + chr1.4:1176525-1176544 None:intergenic 50.0%
CCAGGATGTCAAATCTCACG+GGG - chr1.4:1176643-1176662 MS.gene63981:CDS 50.0%
CCCCCATTTCTTCAGAGGTT+GGG - chr1.4:1176773-1176792 MS.gene63981:CDS 50.0%
CGTGAGATTTGACATCCTGG+AGG + chr1.4:1176643-1176662 None:intergenic 50.0%
GCAGCGAGATACTGCAATTG+CGG - chr1.4:1176525-1176544 MS.gene63981:CDS 50.0%
TAGCAGCCTCAAAGGCTGAT+TGG - chr1.4:1176986-1177005 MS.gene63981:CDS 50.0%
TGGTTCAATGCCAAGTCCTG+AGG + chr1.4:1177015-1177034 None:intergenic 50.0%
TTCCAGCTGTGCCCAACAAA+AGG - chr1.4:1177166-1177185 MS.gene63981:intron 50.0%
! AAAAGGCATGCTCGAGTAGG+TGG - chr1.4:1177183-1177202 MS.gene63981:intron 50.0%
! ACACCAGTACAAGAGCATGC+TGG + chr1.4:1177069-1177088 None:intergenic 50.0%
! CCCAACCTCTGAAGAAATGG+GGG + chr1.4:1176776-1176795 None:intergenic 50.0%
! GTGCTGCCTTTTTCTCAGAG+AGG + chr1.4:1176480-1176499 None:intergenic 50.0%
! TCTGGCCCTCTCTGAGAAAA+AGG - chr1.4:1176471-1176490 MS.gene63981:CDS 50.0%
AACCACCTAGGCGTGCCAAA+CGG - chr1.4:1176797-1176816 MS.gene63981:CDS 55.0%
AGCAGCCCCCATTTCTTCAG+AGG - chr1.4:1176768-1176787 MS.gene63981:CDS 55.0%
AGGGCATGATCTCTCACACC+CGG - chr1.4:1177260-1177279 MS.gene63981:intron 55.0%
CAGAGGTTGGGAAACCACCT+AGG - chr1.4:1176785-1176804 MS.gene63981:CDS 55.0%
CCCCGTGAGATTTGACATCC+TGG + chr1.4:1176646-1176665 None:intergenic 55.0%
CTGAAGAAATGGGGGCTGCT+GGG + chr1.4:1176768-1176787 None:intergenic 55.0%
GCACCAGCATGCTCTTGTAC+TGG - chr1.4:1177063-1177082 MS.gene63981:CDS 55.0%
GCCCCCATTTCTTCAGAGGT+TGG - chr1.4:1176772-1176791 MS.gene63981:CDS 55.0%
GGTATGTCATCATGCCCTCC+AGG - chr1.4:1176625-1176644 MS.gene63981:CDS 55.0%
TCTGAAGAAATGGGGGCTGC+TGG + chr1.4:1176769-1176788 None:intergenic 55.0%
TTGTTGGGCACAGCTGGAAG+TGG + chr1.4:1177165-1177184 None:intergenic 55.0%
! GTACAAGAGCATGCTGGTGC+TGG + chr1.4:1177063-1177082 None:intergenic 55.0%
! TGCCTTTTGTTGGGCACAGC+TGG + chr1.4:1177171-1177190 None:intergenic 55.0%
!! TTAGCCGGCTTGCAGCTGAA+GGG - chr1.4:1177241-1177260 MS.gene63981:intron 55.0%
AAGAAATGGGGGCTGCTGGG+AGG + chr1.4:1176765-1176784 None:intergenic 60.0%
AGAAATGGGGGCTGCTGGGA+GGG + chr1.4:1176764-1176783 None:intergenic 60.0%
CATGCCCTTCAGCTGCAAGC+CGG + chr1.4:1177248-1177267 None:intergenic 60.0%
TAGGCGTGCCAAACGGCCAA+AGG - chr1.4:1176804-1176823 MS.gene63981:CDS 60.0%
TTTGGCCGTTTGGCACGCCT+AGG + chr1.4:1176805-1176824 None:intergenic 60.0%
!! AGAGCATGCTGGTGCTGGCA+TGG + chr1.4:1177058-1177077 None:intergenic 60.0%
!! CTTAGCCGGCTTGCAGCTGA+AGG - chr1.4:1177240-1177259 MS.gene63981:intron 60.0%
GGCCGTTTGGCACGCCTAGG+TGG + chr1.4:1176802-1176821 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 1176194 1177341 1176194 ID=MS.gene63981
chr1.4 mRNA 1176194 1177341 1176194 ID=MS.gene63981.t1;Parent=MS.gene63981
chr1.4 exon 1177282 1177341 1177282 ID=MS.gene63981.t1.exon1;Parent=MS.gene63981.t1
chr1.4 CDS 1177282 1177341 1177282 ID=cds.MS.gene63981.t1;Parent=MS.gene63981.t1
chr1.4 exon 1176194 1177153 1176194 ID=MS.gene63981.t1.exon2;Parent=MS.gene63981.t1
chr1.4 CDS 1176194 1177153 1176194 ID=cds.MS.gene63981.t1;Parent=MS.gene63981.t1
Gene Sequence

>MS.gene63981

ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGGTATATGAAACACGCCTCTGCTCAGAAATAAATTTAAGTTTGCATGAACATAACAGTTGTTAAAAGTGCTGCATATACCTAAAAGGGTGCTTTCTCTACTAATATTCTTCTAAAAATTGCTTTTGCAGTGGTTAATGCAACAGCATCACCAGCATCCTTCCATGAAGCAAATTATGTCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTCTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGGAATAATGCACTTATGGAAAGAGATAATGCGATTGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGTGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCACCTTCCGCAACAGGTAAACCATTTGCCTAATATGGGTGATTCTTCTTACGGCACACGTGAATTGCACACAACTGATTCCCTCCCAGCAGCCCCCATTTCTTCAGAGGTTGGGAAACCACCTAGGCGTGCCAAACGGCCAAAGGAAAGTAAGTCTGATTCACCTAACAAGAAGACTCCAAAATCTAGAAAAGTCAAGAAAGAGGGTGATGATTTAAACAAGACAATGTTTGCCAACAACAAAGAGCTTGAATGGAAGAGTAGTGAGGAAATGATAAATGGAGATGATGATCTTAACAAGCAGTTAGCAGCCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGCATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTATATCCACTTCCAGCTGTGCCCAACAAAAGGCATGCTCGAGTAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTACTTAGCCGGCTTGCAGCTGAAGGGCATGATCTCTCACACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG
Protein sequence

>MS.gene63981.t1

MDDRENGRHKADQYKSAQGQWLMQQHHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTDSLPAAPISSEVGKPPRRAKRPKESKSDSPNKKTPKSRKVKKEGDDLNKTMFANNKELEWKSSEEMINGDDDLNKQLAASKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK