Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64077.t1 | XP_003615261.2 | 98.7 | 1185 | 15 | 0 | 1 | 1185 | 26 | 1210 | 0.00E+00 | 2298.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64077.t1 | G7KBI4 | 98.7 | 1185 | 15 | 0 | 1 | 1185 | 26 | 1210 | 0.0e+00 | 2298.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050009 | MS.gene64077 | 0.93992 | 5.63E-100 | -1.69E-46 |
| MS.gene050894 | MS.gene64077 | 0.842844 | 2.02E-58 | -1.69E-46 |
| MS.gene051885 | MS.gene64077 | 0.800647 | 1.31E-48 | -1.69E-46 |
| MS.gene055331 | MS.gene64077 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene060359 | MS.gene64077 | 0.807656 | 4.54E-50 | -1.69E-46 |
| MS.gene061007 | MS.gene64077 | 0.805129 | 1.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64077.t1 | MTR_5g065900 | 98.734 | 1185 | 15 | 0 | 1 | 1185 | 26 | 1210 | 0.0 | 2439 |
| MS.gene64077.t1 | MTR_5g098710 | 45.161 | 1023 | 484 | 15 | 189 | 1185 | 206 | 1177 | 0.0 | 881 |
| MS.gene64077.t1 | MTR_6g006810 | 47.101 | 138 | 69 | 3 | 273 | 409 | 20 | 154 | 1.59e-27 | 111 |
| MS.gene64077.t1 | MTR_5g016640 | 39.024 | 164 | 34 | 5 | 597 | 759 | 17 | 115 | 4.18e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64077.t1 | AT4G24610 | 62.468 | 1167 | 390 | 12 | 22 | 1185 | 10 | 1131 | 0.0 | 1466 |
| MS.gene64077.t1 | AT4G24610 | 62.500 | 1168 | 392 | 12 | 22 | 1185 | 10 | 1135 | 0.0 | 1464 |
| MS.gene64077.t1 | AT4G24610 | 62.414 | 1168 | 390 | 13 | 22 | 1185 | 10 | 1132 | 0.0 | 1462 |
| MS.gene64077.t1 | AT4G24610 | 62.447 | 1169 | 392 | 13 | 22 | 1185 | 10 | 1136 | 0.0 | 1459 |
| MS.gene64077.t1 | AT5G65440 | 53.970 | 995 | 439 | 7 | 204 | 1185 | 43 | 1031 | 0.0 | 1111 |
| MS.gene64077.t1 | AT5G65440 | 53.970 | 995 | 439 | 7 | 204 | 1185 | 43 | 1031 | 0.0 | 1111 |
| MS.gene64077.t1 | AT5G65440 | 53.970 | 995 | 439 | 7 | 204 | 1185 | 43 | 1031 | 0.0 | 1111 |
| MS.gene64077.t1 | AT5G65440 | 56.739 | 920 | 391 | 4 | 267 | 1185 | 159 | 1072 | 0.0 | 1109 |
| MS.gene64077.t1 | AT5G65440 | 56.739 | 920 | 391 | 4 | 267 | 1185 | 159 | 1072 | 0.0 | 1109 |
| MS.gene64077.t1 | AT5G65440 | 56.739 | 920 | 391 | 4 | 267 | 1185 | 159 | 1072 | 0.0 | 1109 |
| MS.gene64077.t1 | AT5G65440 | 54.717 | 954 | 391 | 5 | 267 | 1185 | 159 | 1106 | 0.0 | 1091 |
| MS.gene64077.t1 | AT5G65440 | 53.749 | 947 | 417 | 8 | 204 | 1135 | 43 | 983 | 0.0 | 1043 |
| MS.gene64077.t1 | AT5G65440 | 55.407 | 897 | 389 | 6 | 244 | 1135 | 134 | 1024 | 0.0 | 1040 |
| MS.gene64077.t1 | AT5G48310 | 43.775 | 1012 | 490 | 16 | 196 | 1185 | 156 | 1110 | 0.0 | 844 |
| MS.gene64077.t1 | AT5G48310 | 46.035 | 908 | 429 | 12 | 289 | 1185 | 280 | 1137 | 0.0 | 837 |
Find 271 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTTGATTCTGCTTTATT+TGG | 0.141623 | 5.1:-51075805 | None:intergenic |
| ACAGAGTTTGCTTCATATTA+TGG | 0.161719 | 5.1:+51077849 | MS.gene64077:CDS |
| CTTCTGGTTGGCACGCTCTT+AGG | 0.188615 | 5.1:+51076758 | MS.gene64077:CDS |
| AGCATGGCACCTAAGAAATT+TGG | 0.201534 | 5.1:+51080208 | MS.gene64077:CDS |
| GATTCCAAGGGAAAGCATTT+TGG | 0.208871 | 5.1:+51077349 | MS.gene64077:CDS |
| CGCGTCTTTGCCTTCACGCT+TGG | 0.211183 | 5.1:+51076262 | MS.gene64077:CDS |
| TAGACCGTTTGGCAAGTTTC+TGG | 0.237058 | 5.1:-51080243 | None:intergenic |
| GATTCGGAAGAGGAAGTTTA+TGG | 0.256978 | 5.1:+51074962 | MS.gene64077:CDS |
| TATTTAAGCCCAAATTTCTT+AGG | 0.261853 | 5.1:-51080217 | None:intergenic |
| TTGCCATCTGTCGAGGTTAT+TGG | 0.267012 | 5.1:+51081166 | MS.gene64077:CDS |
| CTATTTCCCTTCATGATAAC+AGG | 0.279831 | 5.1:-51078081 | None:intergenic |
| TCTTGAGTGGAACCACAAAA+TGG | 0.283617 | 5.1:-51075733 | None:intergenic |
| AGTGACACATAAAATTAAAA+TGG | 0.285788 | 5.1:+51076693 | MS.gene64077:CDS |
| TCCATGGACCATGTAATTCT+AGG | 0.298952 | 5.1:-51077815 | None:intergenic |
| TACCACCACCATCAAAATTT+AGG | 0.302751 | 5.1:+51074852 | MS.gene64077:CDS |
| CATACCTTGCACAGCTTCAT+AGG | 0.304708 | 5.1:-51076926 | None:intergenic |
| TCCATTTGTATATTCTTGTT+TGG | 0.307399 | 5.1:+51079612 | MS.gene64077:CDS |
| TCACAGATGCAACAACTTCT+AGG | 0.308271 | 5.1:+51081627 | MS.gene64077:CDS |
| TTATGGTGGGAGGTATTCTT+TGG | 0.310507 | 5.1:+51074979 | MS.gene64077:CDS |
| TTCACCATTAGCTCCTCTTC+TGG | 0.318680 | 5.1:-51076457 | None:intergenic |
| AAACCCTGTGCATAAATCTT+AGG | 0.320391 | 5.1:+51078899 | MS.gene64077:CDS |
| GCATCCACTCCACCTTTGAT+AGG | 0.324289 | 5.1:-51079578 | None:intergenic |
| TGCCATCTGTCGAGGTTATT+GGG | 0.326097 | 5.1:+51081167 | MS.gene64077:CDS |
| CAGAAACTGGTTTGGGCCTC+AGG | 0.332585 | 5.1:-51078652 | None:intergenic |
| ATAAAATAACTTACAACATA+TGG | 0.335183 | 5.1:-51077217 | None:intergenic |
| TCTAGAACCAAGGTATATTC+TGG | 0.337993 | 5.1:-51079923 | None:intergenic |
| ATGAAAAGTGGCGGCGGTAG+AGG | 0.350205 | 5.1:+51074821 | MS.gene64077:CDS |
| CAGTTTCTGTCACTACTTCC+AGG | 0.351135 | 5.1:+51078666 | MS.gene64077:CDS |
| AGAAGTTGCAATGAAAGTTC+AGG | 0.359320 | 5.1:+51077776 | MS.gene64077:CDS |
| AGTGGCGGCGGTAGAGGGTT+TGG | 0.359656 | 5.1:+51074827 | MS.gene64077:CDS |
| AATGGTGCTGCTAAGAGATA+TGG | 0.361058 | 5.1:+51075031 | MS.gene64077:CDS |
| AAATCATCTCCAAGACTATC+TGG | 0.365820 | 5.1:-51077310 | None:intergenic |
| GAGAATAGATCATGGTATAA+AGG | 0.367349 | 5.1:+51081336 | MS.gene64077:CDS |
| GCAAAGCTCTGTGCTGTATA+TGG | 0.367805 | 5.1:-51079322 | None:intergenic |
| TGAAAGATCTCTTTGAAAAT+CGG | 0.369680 | 5.1:-51079424 | None:intergenic |
| GCATGGCACCTAAGAAATTT+GGG | 0.379782 | 5.1:+51080209 | MS.gene64077:CDS |
| GCAAAGATAGACGTTTATCT+TGG | 0.381941 | 5.1:-51079637 | None:intergenic |
| TTGCAGTCAAAACTATCTTC+TGG | 0.383266 | 5.1:+51076742 | MS.gene64077:CDS |
| GCGTCTTTGCCTTCACGCTT+GGG | 0.385460 | 5.1:+51076263 | MS.gene64077:CDS |
| TGTGTCAGGGAACCATTTGC+AGG | 0.387579 | 5.1:-51076805 | None:intergenic |
| GGTGCTGTGTTTCCAGCATT+TGG | 0.390436 | 5.1:-51080473 | None:intergenic |
| TATCTGTTCAATTTCGTCCT+TGG | 0.391761 | 5.1:-51078482 | None:intergenic |
| TTGAACTGTGATTCAATCCT+TGG | 0.396509 | 5.1:-51080431 | None:intergenic |
| CTTGATGAGTCATCTTTCTC+TGG | 0.397406 | 5.1:+51078535 | MS.gene64077:CDS |
| AAAGTTCAGGAACTACTTGC+AGG | 0.398147 | 5.1:+51080535 | MS.gene64077:CDS |
| CAAGGCAGGAGCTGCATGAC+TGG | 0.398224 | 5.1:-51078584 | None:intergenic |
| GAATAATGAAAGCTGTTTGA+TGG | 0.399448 | 5.1:+51078840 | MS.gene64077:CDS |
| CTGGAAGTAGTGACAGAAAC+TGG | 0.403028 | 5.1:-51078665 | None:intergenic |
| CTTTGAACATTCATCCTTGA+AGG | 0.404054 | 5.1:-51075328 | None:intergenic |
| CTTTACTTAGAGATGCATTT+GGG | 0.409059 | 5.1:+51076331 | MS.gene64077:CDS |
| TCGTCCAGAGAAACACTTAC+TGG | 0.409705 | 5.1:+51075115 | MS.gene64077:CDS |
| CTTGAGTGGAACCACAAAAT+GGG | 0.414168 | 5.1:-51075732 | None:intergenic |
| AAGGCGAGGTGGTTGTGAAT+TGG | 0.418037 | 5.1:-51076086 | None:intergenic |
| TAGCGGTTCAAATAGTGATA+TGG | 0.420595 | 5.1:+51074928 | MS.gene64077:CDS |
| TATCTCTTAGCAGCACCATT+GGG | 0.421520 | 5.1:-51075028 | None:intergenic |
| TAGTTGAAGAAGACGCCATT+AGG | 0.423070 | 5.1:+51077171 | MS.gene64077:CDS |
| TATGGACGCCAGCGTTGATT+CGG | 0.426775 | 5.1:+51074946 | MS.gene64077:CDS |
| CGCTTGGGCGATGCAGTGTA+TGG | 0.427505 | 5.1:+51076278 | MS.gene64077:CDS |
| GGCACGCTCTTAGGAAAGTT+CGG | 0.428629 | 5.1:+51076767 | MS.gene64077:CDS |
| AATTACATGGTCCATGGAAA+TGG | 0.428646 | 5.1:+51077820 | MS.gene64077:CDS |
| TTAGCAGCACTCCTCATTAC+CGG | 0.429720 | 5.1:-51075160 | None:intergenic |
| TCTTCCAGTAAGTGTTTCTC+TGG | 0.430514 | 5.1:-51075119 | None:intergenic |
| TCTTTACTTAGAGATGCATT+TGG | 0.430566 | 5.1:+51076330 | MS.gene64077:CDS |
| AATACTGTGAAGATAGCTTA+TGG | 0.431220 | 5.1:-51081124 | None:intergenic |
| GTACTTTGAAATCTGTATCC+AGG | 0.431525 | 5.1:+51075824 | MS.gene64077:CDS |
| GATGTCGAGCATCCTCTTCA+AGG | 0.434680 | 5.1:-51080402 | None:intergenic |
| TGCAGCTCCTGCCTTGGAAC+CGG | 0.440849 | 5.1:+51078591 | MS.gene64077:CDS |
| GGCTGCTATCGCTGATAATC+CGG | 0.442816 | 5.1:+51077390 | MS.gene64077:CDS |
| CATTCCTAAGATTTATGCAC+AGG | 0.442823 | 5.1:-51078903 | None:intergenic |
| TGATGCTGAGAGCAAAGTTC+AGG | 0.447811 | 5.1:+51080522 | MS.gene64077:CDS |
| TGCTAATAAGTTACCTGTCT+CGG | 0.449263 | 5.1:+51074889 | MS.gene64077:CDS |
| AATGTCTCAACCGCCGAGAC+AGG | 0.449799 | 5.1:-51074902 | None:intergenic |
| TGTTCAAAGTTCTGCAGAAA+AGG | 0.451148 | 5.1:+51075342 | MS.gene64077:CDS |
| AGATCTCGTGATCCGATTAG+TGG | 0.452469 | 5.1:+51074797 | MS.gene64077:CDS |
| GTACCACATTTGCCTGCAAA+TGG | 0.452983 | 5.1:+51076793 | MS.gene64077:CDS |
| GAACTACTTGCAGGCTATTG+TGG | 0.456163 | 5.1:+51080544 | MS.gene64077:CDS |
| TTAACAGCCGGTTCCAAGGC+AGG | 0.459389 | 5.1:-51078598 | None:intergenic |
| CAGAACTGCTACTGGTTCAG+AGG | 0.460004 | 5.1:+51076051 | MS.gene64077:intron |
| GGATCCAGGCTGCAACCTAA+TGG | 0.460520 | 5.1:-51077186 | None:intergenic |
| AACAGCAGATTGCCTTAACT+TGG | 0.461204 | 5.1:+51078041 | MS.gene64077:CDS |
| TTGCTCAGATGCCACGGTCT+CGG | 0.463158 | 5.1:+51075059 | MS.gene64077:CDS |
| ATATCTCTTAGCAGCACCAT+TGG | 0.463834 | 5.1:-51075029 | None:intergenic |
| CGAACCTCCATGATGCATCT+AGG | 0.464652 | 5.1:-51081681 | None:intergenic |
| GCAGATTATATACCAAGTTA+AGG | 0.465872 | 5.1:-51078053 | None:intergenic |
| AGTAGTGACAGAAACTGGTT+TGG | 0.467102 | 5.1:-51078660 | None:intergenic |
| AGCAGGGCTTATATGTCAGC+AGG | 0.469725 | 5.1:+51075289 | MS.gene64077:CDS |
| AGATGACAATAGTCATCTTA+AGG | 0.472987 | 5.1:+51077597 | MS.gene64077:CDS |
| CGCTATATACAACAAGTCTC+TGG | 0.473262 | 5.1:+51076859 | MS.gene64077:CDS |
| GAACCAGACCATGAGCTTGT+TGG | 0.474020 | 5.1:+51077538 | MS.gene64077:CDS |
| GGTGCCATGCTATCTTTAAG+AGG | 0.479202 | 5.1:-51080196 | None:intergenic |
| GATCATGGTATAAAGGTTCA+AGG | 0.479291 | 5.1:+51081343 | MS.gene64077:CDS |
| GTAATGAGGAGTGCTGCTAA+TGG | 0.479572 | 5.1:+51075163 | MS.gene64077:CDS |
| ATAATCAAAATATACTTCCT+AGG | 0.479944 | 5.1:+51078950 | MS.gene64077:CDS |
| GCTTCTTGCTTACCAAATGC+TGG | 0.480620 | 5.1:+51080461 | MS.gene64077:CDS |
| TTGAATCACAGTTCAAATCA+TGG | 0.480727 | 5.1:+51080438 | MS.gene64077:CDS |
| TATATGGAAGCAGAAAGATT+TGG | 0.484202 | 5.1:-51079306 | None:intergenic |
| TCCAAACAAGAATATACAAA+TGG | 0.484801 | 5.1:-51079613 | None:intergenic |
| TTACAACATATGGACTTCAC+TGG | 0.488136 | 5.1:-51077207 | None:intergenic |
| TCTTATCAGAATCGACTACT+AGG | 0.490024 | 5.1:+51078454 | MS.gene64077:intron |
| GTGGGGCTCGACCCTCCTAC+TGG | 0.490437 | 5.1:+51076652 | MS.gene64077:CDS |
| CAGTCATGCAGCTCCTGCCT+TGG | 0.491978 | 5.1:+51078585 | MS.gene64077:CDS |
| CAAGCTCATGGTCTGGTTCA+CGG | 0.492655 | 5.1:-51077534 | None:intergenic |
| TAAATTCAACCCACCTCCTC+AGG | 0.493294 | 5.1:-51080283 | None:intergenic |
| GTACTACGTGTTGCAGAAGT+TGG | 0.493392 | 5.1:-51075781 | None:intergenic |
| ATAGGCACATGTAGACCGTT+TGG | 0.494429 | 5.1:-51080254 | None:intergenic |
| GAAGTTGCAATGAAAGTTCA+GGG | 0.494648 | 5.1:+51077777 | MS.gene64077:CDS |
| ATTAAGTTACCTGTCCCATT+CGG | 0.494879 | 5.1:-51081191 | None:intergenic |
| TTCAAAGAGATCTTTCAGGC+TGG | 0.497753 | 5.1:+51079430 | MS.gene64077:CDS |
| ACGCCCAAAATGCTTTCCCT+TGG | 0.498791 | 5.1:-51077353 | None:intergenic |
| ATGCTTCTAGTGTACCTTCA+AGG | 0.501694 | 5.1:+51075314 | MS.gene64077:CDS |
| TCAACCAGAAGAGGAGCTAA+TGG | 0.506702 | 5.1:+51076453 | MS.gene64077:CDS |
| ACAAGGAATGACGAGGGATC+CGG | 0.506996 | 5.1:+51075141 | MS.gene64077:CDS |
| GGAGCTGCATGACTGGATGC+TGG | 0.507579 | 5.1:-51078577 | None:intergenic |
| CTTCTTAGTCCTATCAAAGG+TGG | 0.511888 | 5.1:+51079569 | MS.gene64077:intron |
| TTGCCAACAAGCTCATGGTC+TGG | 0.512703 | 5.1:-51077541 | None:intergenic |
| ATATGGACTTCACTGGATCC+AGG | 0.515067 | 5.1:-51077200 | None:intergenic |
| GAAGATTCTTCAAGATTCAA+AGG | 0.515408 | 5.1:+51081038 | MS.gene64077:CDS |
| CTCATATCTTGTCCACCGAC+AGG | 0.515457 | 5.1:+51079363 | MS.gene64077:CDS |
| AGTTCTGCTACTGGTGATGA+TGG | 0.517116 | 5.1:-51079387 | None:intergenic |
| CGAGGTTATTGGGACCGAAT+GGG | 0.517152 | 5.1:+51081177 | MS.gene64077:CDS |
| AAGTTGGTGTAACAACTTTG+CGG | 0.517995 | 5.1:+51076890 | MS.gene64077:CDS |
| GCAGTACGCAAAGTCAAAGT+GGG | 0.519161 | 5.1:+51076634 | MS.gene64077:intron |
| AGTTTGTCTTATCTCTTGAG+TGG | 0.521566 | 5.1:-51075746 | None:intergenic |
| TGATACCTTGCATGAAATGT+TGG | 0.522674 | 5.1:-51076109 | None:intergenic |
| TGAATCACAGTTCAAATCAT+GGG | 0.525286 | 5.1:+51080439 | MS.gene64077:CDS |
| TTGGGGACTCTGTTGTCTTG+TGG | 0.525829 | 5.1:-51075010 | None:intergenic |
| AAAACTTATTGGCAAGATGA+AGG | 0.526439 | 5.1:+51076525 | MS.gene64077:CDS |
| ATGGTTCTCTAACTTATCCC+TGG | 0.527134 | 5.1:-51075842 | None:intergenic |
| CATTGAAGTTCAAGATTCCA+AGG | 0.529687 | 5.1:+51077336 | MS.gene64077:CDS |
| TCGAGGTTATTGGGACCGAA+TGG | 0.530623 | 5.1:+51081176 | MS.gene64077:CDS |
| TATATTCATCTGTGTCAGAA+AGG | 0.531164 | 5.1:-51078810 | None:intergenic |
| GTGAAGGCAAAGACGCGCAC+AGG | 0.531948 | 5.1:-51076256 | None:intergenic |
| GTCTCTGGACTCCTAAAAGT+TGG | 0.532031 | 5.1:+51076874 | MS.gene64077:CDS |
| TGCGTTCACAGAACTGCTAC+TGG | 0.533287 | 5.1:+51076043 | MS.gene64077:intron |
| GCTTGCACCTGTTATCATGA+AGG | 0.534068 | 5.1:+51078074 | MS.gene64077:CDS |
| TTTCCGAGCTTGCATCTCCA+TGG | 0.536492 | 5.1:-51075861 | None:intergenic |
| AGCTTGTAAAGTTTAACAGC+CGG | 0.536736 | 5.1:-51078610 | None:intergenic |
| ACCTAGAATTACATGGTCCA+TGG | 0.537176 | 5.1:+51077814 | MS.gene64077:CDS |
| TCGGAAGAGGAAGTTTATGG+TGG | 0.537923 | 5.1:+51074965 | MS.gene64077:CDS |
| AAGTTCAGGGCTTTCAGCAA+AGG | 0.539878 | 5.1:+51077790 | MS.gene64077:CDS |
| CGCCAGCGTTGATTCGGAAG+AGG | 0.540156 | 5.1:+51074952 | MS.gene64077:CDS |
| GAGACAGGTAACTTATTAGC+AGG | 0.540938 | 5.1:-51074887 | None:intergenic |
| GACGCCATTAGGTTGCAGCC+TGG | 0.541548 | 5.1:+51077182 | MS.gene64077:CDS |
| CTAGCTAACTGCTCTTTCAG+TGG | 0.542632 | 5.1:-51081099 | None:intergenic |
| AAGTTTAACAGCCGGTTCCA+AGG | 0.542939 | 5.1:-51078602 | None:intergenic |
| GCTGCTAATGGAAGGCAGAA+TGG | 0.544705 | 5.1:+51075175 | MS.gene64077:CDS |
| CTGTCGGTGGACAAGATATG+AGG | 0.545131 | 5.1:-51079362 | None:intergenic |
| TATCAGCGATAGCAGCCACT+TGG | 0.545567 | 5.1:-51077384 | None:intergenic |
| GTAGTGACAGAAACTGGTTT+GGG | 0.545700 | 5.1:-51078659 | None:intergenic |
| GCCTTCCAACATTTCATGCA+AGG | 0.546520 | 5.1:+51076104 | MS.gene64077:CDS |
| CCGCTGGCCAGAATATACCT+TGG | 0.546895 | 5.1:+51079916 | MS.gene64077:CDS |
| TACTTTGAAATCTGTATCCA+GGG | 0.547378 | 5.1:+51075825 | MS.gene64077:CDS |
| TTATTGGGACCGAATGGGAC+AGG | 0.547657 | 5.1:+51081182 | MS.gene64077:CDS |
| ATGACTATTGTCATCTGCAC+TGG | 0.548196 | 5.1:-51077590 | None:intergenic |
| ATGGTGCTGCTAAGAGATAT+GGG | 0.549903 | 5.1:+51075032 | MS.gene64077:CDS |
| TAGATATCTATCGTATGTCA+TGG | 0.550386 | 5.1:+51078005 | MS.gene64077:intron |
| TTCCTTCTTAGTCCTATCAA+AGG | 0.554631 | 5.1:+51079566 | MS.gene64077:intron |
| AGCTCCTCTTAAAGATAGCA+TGG | 0.555560 | 5.1:+51080192 | MS.gene64077:CDS |
| TGATACCTCTTGGTGGCTCA+AGG | 0.555917 | 5.1:-51078112 | None:intergenic |
| TTCCCTGACACATAAAAGCT+TGG | 0.559129 | 5.1:+51076816 | MS.gene64077:CDS |
| ACAGAAAAGAGAATAGATCA+TGG | 0.559892 | 5.1:+51081328 | MS.gene64077:CDS |
| CGGAAGAGGAAGTTTATGGT+GGG | 0.560572 | 5.1:+51074966 | MS.gene64077:CDS |
| TCATGATATCTTATCTCCTG+AGG | 0.562589 | 5.1:+51078636 | MS.gene64077:CDS |
| GACATGCTACAGCCAGTAGG+AGG | 0.562749 | 5.1:-51076664 | None:intergenic |
| CAAGTAGGGAGTAGTATCAA+TGG | 0.563189 | 5.1:+51075253 | MS.gene64077:CDS |
| CTTGCACCTGTTATCATGAA+GGG | 0.565811 | 5.1:+51078075 | MS.gene64077:CDS |
| GAACCATTTGCAGGCAAATG+TGG | 0.565898 | 5.1:-51076796 | None:intergenic |
| GAGCTAATGGTGAAATGCAA+TGG | 0.566880 | 5.1:+51076466 | MS.gene64077:CDS |
| GGATGATTCGTCGGATTCTG+CGG | 0.568196 | 5.1:+51075207 | MS.gene64077:CDS |
| ACGGTCTACATGTGCCTATG+TGG | 0.568735 | 5.1:+51080258 | MS.gene64077:CDS |
| ATGTCCAGAAACTTGCCAAA+CGG | 0.569380 | 5.1:+51080239 | MS.gene64077:CDS |
| TCATACATGTCATCAACAAA+GGG | 0.569455 | 5.1:-51079851 | None:intergenic |
| CCGATTAGTGGAATGAAAAG+TGG | 0.570072 | 5.1:+51074809 | MS.gene64077:CDS |
| TGACGAGGGATCCGGTAATG+AGG | 0.570148 | 5.1:+51075149 | MS.gene64077:CDS |
| GTATCTTGCCAACAAGCTCA+TGG | 0.570307 | 5.1:-51077546 | None:intergenic |
| CTCATACATGTCATCAACAA+AGG | 0.571246 | 5.1:-51079852 | None:intergenic |
| GCAATGACAAGTTCTGCTAC+TGG | 0.573441 | 5.1:-51079396 | None:intergenic |
| TTTCACTGAGGATGATTCGT+CGG | 0.574054 | 5.1:+51075198 | MS.gene64077:CDS |
| TGCCTATGTGGTTCCTGAGG+AGG | 0.575224 | 5.1:+51080270 | MS.gene64077:CDS |
| CAAAGGAACCTAGAATTACA+TGG | 0.575331 | 5.1:+51077807 | MS.gene64077:CDS |
| ACTTCGCTAAGTCGCTCACC+AGG | 0.575585 | 5.1:-51080494 | None:intergenic |
| TCTGTCAAGAGCCATTTCCA+TGG | 0.578372 | 5.1:-51077831 | None:intergenic |
| GGAAACATTGACAGACTATG+AGG | 0.579854 | 5.1:+51079883 | MS.gene64077:CDS |
| ATGAGGTCATCATTTGCCGC+TGG | 0.580095 | 5.1:+51079900 | MS.gene64077:CDS |
| TGAAAAGTGGCGGCGGTAGA+GGG | 0.581702 | 5.1:+51074822 | MS.gene64077:CDS |
| TGCAGTACGCAAAGTCAAAG+TGG | 0.581751 | 5.1:+51076633 | MS.gene64077:intron |
| GAACCATGGAGATGCAAGCT+CGG | 0.582420 | 5.1:+51075858 | MS.gene64077:CDS |
| TTGACTGCAAATTTGAGAAG+TGG | 0.583581 | 5.1:-51076729 | None:intergenic |
| ATCTTTCTCTGGAATCGTCG+AGG | 0.584965 | 5.1:+51078546 | MS.gene64077:CDS |
| AGTCAAAACTATCTTCTGGT+TGG | 0.585669 | 5.1:+51076746 | MS.gene64077:CDS |
| TGATATTGAGAAGGCGATTG+TGG | 0.585814 | 5.1:+51080138 | MS.gene64077:CDS |
| GTCCCAATAACCTCGACAGA+TGG | 0.586762 | 5.1:-51081169 | None:intergenic |
| GGAGGCACCTAGATGCATCA+TGG | 0.587292 | 5.1:+51081674 | MS.gene64077:CDS |
| TCCTCCTATGAAGCTGTGCA+AGG | 0.588239 | 5.1:+51076922 | MS.gene64077:CDS |
| TGCTCGACATCTTACGTCCA+AGG | 0.589561 | 5.1:+51080414 | MS.gene64077:CDS |
| AGTGCTTCTTCAACCAGAAG+AGG | 0.591826 | 5.1:+51076444 | MS.gene64077:CDS |
| TGGAAGCAGAAAGATTTGGC+AGG | 0.594188 | 5.1:-51079302 | None:intergenic |
| TTCCTCTTCCGAATCAACGC+TGG | 0.594375 | 5.1:-51074954 | None:intergenic |
| TGAGGAGTGCTGCTAATGGA+AGG | 0.594622 | 5.1:+51075167 | MS.gene64077:CDS |
| AAGTTAAGGCAATCTGCTGT+TGG | 0.596013 | 5.1:-51078039 | None:intergenic |
| CAATGGAGAACTTTCTAGTG+AGG | 0.596450 | 5.1:+51076483 | MS.gene64077:CDS |
| TTGAGTGGAACCACAAAATG+GGG | 0.597596 | 5.1:-51075731 | None:intergenic |
| TCATTGCAACTTCTAGAACC+AGG | 0.599580 | 5.1:-51077767 | None:intergenic |
| TAGTCCTATCAAAGGTGGAG+TGG | 0.600358 | 5.1:+51079574 | MS.gene64077:intron |
| AAGAGGAAGTTTATGGTGGG+AGG | 0.602802 | 5.1:+51074969 | MS.gene64077:CDS |
| CTTCTGGTAAGCGGTAGACA+TGG | 0.603040 | 5.1:-51078872 | None:intergenic |
| AATGCTGGAAACACAGCACC+TGG | 0.603796 | 5.1:+51080476 | MS.gene64077:CDS |
| GATACTACTCCCTACTTGTG+TGG | 0.604286 | 5.1:-51075248 | None:intergenic |
| GGCAATAGCTGATATTGAGA+AGG | 0.610931 | 5.1:+51080129 | MS.gene64077:intron |
| GGAATGTTGCTCAGATGCCA+CGG | 0.611258 | 5.1:+51075053 | MS.gene64077:CDS |
| ACCTTGCACAGCTTCATAGG+AGG | 0.612295 | 5.1:-51076923 | None:intergenic |
| CTGGAAGACAAGGAATGACG+AGG | 0.612503 | 5.1:+51075134 | MS.gene64077:CDS |
| ATCATGGTATAAAGGTTCAA+GGG | 0.614850 | 5.1:+51081344 | MS.gene64077:CDS |
| ATGTCGATGATACCTCTTGG+TGG | 0.614897 | 5.1:-51078119 | None:intergenic |
| AGCTTTAGATAAACAGTATG+CGG | 0.619900 | 5.1:+51080162 | MS.gene64077:CDS |
| ACTGCATCGCCCAAGCGTGA+AGG | 0.619920 | 5.1:-51076272 | None:intergenic |
| GGCTATTGTGGAGAAACTCG+TGG | 0.621189 | 5.1:+51080556 | MS.gene64077:CDS |
| ATGTGCCTATGTGGTTCCTG+AGG | 0.623485 | 5.1:+51080267 | MS.gene64077:CDS |
| CACCTCCTCAGGAACCACAT+AGG | 0.624978 | 5.1:-51080272 | None:intergenic |
| ATTGAAGTTCAAGATTCCAA+GGG | 0.625316 | 5.1:+51077337 | MS.gene64077:CDS |
| ATTCCTAAGATTTATGCACA+GGG | 0.625437 | 5.1:-51078902 | None:intergenic |
| AATGGAGAACTTTCTAGTGA+GGG | 0.631445 | 5.1:+51076484 | MS.gene64077:CDS |
| GAAACACTTACTGGAAGACA+AGG | 0.633456 | 5.1:+51075124 | MS.gene64077:CDS |
| GAACTTTGCTCTCAGCATCA+CGG | 0.635566 | 5.1:-51080519 | None:intergenic |
| AGTGGAATGAAAAGTGGCGG+CGG | 0.636709 | 5.1:+51074815 | MS.gene64077:CDS |
| TCAAGATTCAAAGGAAACAG+TGG | 0.637389 | 5.1:+51081047 | MS.gene64077:CDS |
| ATCTCTTAGCAGCACCATTG+GGG | 0.638124 | 5.1:-51075027 | None:intergenic |
| AGGGATAAGTTAGAGAACCA+TGG | 0.640988 | 5.1:+51075844 | MS.gene64077:CDS |
| CGAGTCGTGCAAATTAGACA+AGG | 0.642662 | 5.1:+51079661 | MS.gene64077:CDS |
| AGAACTGCTACTGGTTCAGA+GGG | 0.643693 | 5.1:+51076052 | MS.gene64077:intron |
| ACTGGTGATGATGGACCTGT+CGG | 0.643984 | 5.1:-51079378 | None:intergenic |
| TGCGATACAAGAGAAAGACA+TGG | 0.645035 | 5.1:+51081653 | MS.gene64077:CDS |
| TCGACTACTAGGAGAGACCA+AGG | 0.647615 | 5.1:+51078465 | MS.gene64077:CDS |
| GCATGAAATGTTGGAAGGCG+AGG | 0.653114 | 5.1:-51076100 | None:intergenic |
| GGAGACAGTTGCATATGACC+TGG | 0.654916 | 5.1:+51077749 | MS.gene64077:CDS |
| AGTCTGACAAAGTACGCTGG+TGG | 0.654966 | 5.1:+51077503 | MS.gene64077:intron |
| TAAGCGGTAGACATGGTCAA+AGG | 0.655113 | 5.1:-51078865 | None:intergenic |
| CTGAGATTTATACAATGCTG+AGG | 0.655117 | 5.1:+51077877 | MS.gene64077:CDS |
| AACTTCCTTGAGCCACCAAG+AGG | 0.658392 | 5.1:+51078107 | MS.gene64077:CDS |
| GGTGATGATGGACCTGTCGG+TGG | 0.659135 | 5.1:-51079375 | None:intergenic |
| TAGAAGTTGTTGCATCTGTG+AGG | 0.659849 | 5.1:-51081625 | None:intergenic |
| TGGAAGGTTATCTGATGACG+AGG | 0.662168 | 5.1:+51075687 | MS.gene64077:CDS |
| ATTGGCAAGATGAAGGTGCA+AGG | 0.662707 | 5.1:+51076532 | MS.gene64077:CDS |
| TGACATGTATGAGCGGCTGA+AGG | 0.662731 | 5.1:+51079862 | MS.gene64077:CDS |
| ACCTTGCATGAAATGTTGGA+AGG | 0.664073 | 5.1:-51076105 | None:intergenic |
| CGGTGGACAAGATATGAGGA+AGG | 0.664141 | 5.1:-51079358 | None:intergenic |
| AAGGCAATCTGCTGTTGGTG+TGG | 0.664226 | 5.1:-51078034 | None:intergenic |
| CAGTACGCAAAGTCAAAGTG+GGG | 0.672704 | 5.1:+51076635 | MS.gene64077:intron |
| GATGACATGCTACAGCCAGT+AGG | 0.673386 | 5.1:-51076667 | None:intergenic |
| TGGGCGTGTTCTTGTCCAAG+TGG | 0.675367 | 5.1:+51077369 | MS.gene64077:CDS |
| CCAAGGTATATTCTGGCCAG+CGG | 0.676002 | 5.1:-51079916 | None:intergenic |
| ATTAGTGGAATGAAAAGTGG+CGG | 0.676114 | 5.1:+51074812 | MS.gene64077:CDS |
| ACATGCTACAGCCAGTAGGA+GGG | 0.676190 | 5.1:-51076663 | None:intergenic |
| AACAGTCTGACAAAGTACGC+TGG | 0.679236 | 5.1:+51077500 | MS.gene64077:intron |
| TGGAAGACAAGGAATGACGA+GGG | 0.680604 | 5.1:+51075135 | MS.gene64077:CDS |
| GTTGCAGTGTGGTTCTGTAG+CGG | 0.681208 | 5.1:+51077728 | MS.gene64077:intron |
| TATGCAATTACTGCATACCA+TGG | 0.685741 | 5.1:-51076228 | None:intergenic |
| GCAGGGCTTATATGTCAGCA+GGG | 0.687674 | 5.1:+51075290 | MS.gene64077:CDS |
| GCGGTTGAGACATTCGATAG+CGG | 0.689985 | 5.1:+51074911 | MS.gene64077:CDS |
| CCACCATCAAAATTTAGGAG+TGG | 0.694173 | 5.1:+51074857 | MS.gene64077:CDS |
| CAAGACAACAGAGTCCCCAA+TGG | 0.694596 | 5.1:+51075013 | MS.gene64077:CDS |
| ATGGTATAAAGGTTCAAGGG+TGG | 0.698357 | 5.1:+51081347 | MS.gene64077:CDS |
| TTGTTGATGACATGTATGAG+CGG | 0.713232 | 5.1:+51079855 | MS.gene64077:CDS |
| TGAAATGTTGGAAGGCGAGG+TGG | 0.713600 | 5.1:-51076097 | None:intergenic |
| TGAGTGGAACCACAAAATGG+GGG | 0.722587 | 5.1:-51075730 | None:intergenic |
| TCACTCGCATACCGAGACCG+TGG | 0.723475 | 5.1:-51075070 | None:intergenic |
| GGCACCTAGATGCATCATGG+AGG | 0.732994 | 5.1:+51081677 | MS.gene64077:CDS |
| TAATAAGTTACCTGTCTCGG+CGG | 0.736229 | 5.1:+51074892 | MS.gene64077:CDS |
| AGAGATAAGACAAACTAACG+AGG | 0.762301 | 5.1:+51075753 | MS.gene64077:CDS |
| GATACAAGAGAAAGACATGG+AGG | 0.786579 | 5.1:+51081656 | MS.gene64077:CDS |
| AAGGCAGAATGGTTTCACTG+AGG | 0.797068 | 5.1:+51075186 | MS.gene64077:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 51074794 | 51081698 | 51074794 | ID=MS.gene64077 |
| chr5.1 | mRNA | 51074794 | 51081698 | 51074794 | ID=MS.gene64077.t1;Parent=MS.gene64077 |
| chr5.1 | exon | 51074794 | 51075363 | 51074794 | ID=MS.gene64077.t1.exon1;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51074794 | 51075363 | 51074794 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51075685 | 51075893 | 51075685 | ID=MS.gene64077.t1.exon2;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51075685 | 51075893 | 51075685 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51076054 | 51076125 | 51076054 | ID=MS.gene64077.t1.exon3;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51076054 | 51076125 | 51076054 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51076218 | 51076352 | 51076218 | ID=MS.gene64077.t1.exon4;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51076218 | 51076352 | 51076218 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51076435 | 51076553 | 51076435 | ID=MS.gene64077.t1.exon5;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51076435 | 51076553 | 51076435 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51076638 | 51076943 | 51076638 | ID=MS.gene64077.t1.exon6;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51076638 | 51076943 | 51076638 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51077138 | 51077225 | 51077138 | ID=MS.gene64077.t1.exon7;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51077138 | 51077225 | 51077138 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51077306 | 51077411 | 51077306 | ID=MS.gene64077.t1.exon8;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51077306 | 51077411 | 51077306 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51077505 | 51077618 | 51077505 | ID=MS.gene64077.t1.exon9;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51077505 | 51077618 | 51077505 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51077735 | 51077898 | 51077735 | ID=MS.gene64077.t1.exon10;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51077735 | 51077898 | 51077735 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51078008 | 51078128 | 51078008 | ID=MS.gene64077.t1.exon11;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51078008 | 51078128 | 51078008 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51078463 | 51078687 | 51078463 | ID=MS.gene64077.t1.exon12;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51078463 | 51078687 | 51078463 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51078781 | 51078971 | 51078781 | ID=MS.gene64077.t1.exon13;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51078781 | 51078971 | 51078781 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51079293 | 51079460 | 51079293 | ID=MS.gene64077.t1.exon14;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51079293 | 51079460 | 51079293 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51079577 | 51079682 | 51079577 | ID=MS.gene64077.t1.exon15;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51079577 | 51079682 | 51079577 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51079812 | 51079949 | 51079812 | ID=MS.gene64077.t1.exon16;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51079812 | 51079949 | 51079812 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51080130 | 51080291 | 51080130 | ID=MS.gene64077.t1.exon17;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51080130 | 51080291 | 51080130 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51080383 | 51080583 | 51080383 | ID=MS.gene64077.t1.exon18;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51080383 | 51080583 | 51080383 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51081009 | 51081203 | 51081009 | ID=MS.gene64077.t1.exon19;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51081009 | 51081203 | 51081009 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51081306 | 51081377 | 51081306 | ID=MS.gene64077.t1.exon20;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51081306 | 51081377 | 51081306 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| chr5.1 | exon | 51081606 | 51081698 | 51081606 | ID=MS.gene64077.t1.exon21;Parent=MS.gene64077.t1 |
| chr5.1 | CDS | 51081606 | 51081698 | 51081606 | ID=cds.MS.gene64077.t1;Parent=MS.gene64077.t1 |
| Gene Sequence |
| Protein sequence |
