Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64142.t1 | XP_024639431.1 | 89.6 | 328 | 33 | 1 | 1 | 328 | 1 | 327 | 1.20E-147 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64142.t1 | A0A396HXP9 | 89.6 | 328 | 33 | 1 | 1 | 328 | 1 | 327 | 8.6e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene64142 | 0.802329 | 5.91E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene64142 | 0.884141 | 2.47E-71 | -1.69E-46 |
| MS.gene050297 | MS.gene64142 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene64142 | 0.825881 | 3.68E-54 | -1.69E-46 |
| MS.gene053538 | MS.gene64142 | 0.833335 | 5.66E-56 | -1.69E-46 |
| MS.gene054643 | MS.gene64142 | 0.819481 | 1.14E-52 | -1.69E-46 |
| MS.gene058210 | MS.gene64142 | 0.817667 | 2.93E-52 | -1.69E-46 |
| MS.gene059424 | MS.gene64142 | 0.822106 | 2.83E-53 | -1.69E-46 |
| MS.gene059778 | MS.gene64142 | 0.84267 | 2.24E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene64142 | 0.806368 | 8.51E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64142.t1 | MTR_5g064800 | 62.290 | 297 | 48 | 4 | 30 | 323 | 56 | 291 | 1.68e-80 | 250 |
| MS.gene64142.t1 | MTR_3g099600 | 48.883 | 358 | 128 | 5 | 1 | 321 | 1 | 340 | 2.33e-76 | 238 |
| MS.gene64142.t1 | MTR_5g064760 | 41.071 | 168 | 82 | 6 | 137 | 294 | 54 | 214 | 1.22e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64142.t1 | AT4G09060 | 45.820 | 323 | 164 | 4 | 2 | 320 | 18 | 333 | 4.04e-76 | 237 |
| MS.gene64142.t1 | AT4G09060 | 42.693 | 349 | 163 | 5 | 2 | 320 | 18 | 359 | 6.61e-72 | 227 |
| MS.gene64142.t1 | AT1G14680 | 44.262 | 305 | 144 | 6 | 1 | 301 | 1 | 283 | 1.08e-65 | 209 |
Find 64 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGAAATCGTCGATTTC+GGG | 0.204833 | 5.1:+49728196 | None:intergenic |
| TTTGATGAAATCGTCGATTT+CGG | 0.249397 | 5.1:+49728195 | None:intergenic |
| GAAGCTTGATGTCGAGGGTT+TGG | 0.291158 | 5.1:+49728134 | None:intergenic |
| AAGCTTGATGTCGAGGGTTT+GGG | 0.319462 | 5.1:+49728135 | None:intergenic |
| AAAAGGACAAAGAGCATCTA+AGG | 0.339255 | 5.1:-49725409 | MS.gene64142:CDS |
| GAGTTTGCTTGACTCTCTTT+TGG | 0.341432 | 5.1:-49726312 | MS.gene64142:CDS |
| ATCTGTTGAAAATAGCATAT+TGG | 0.342998 | 5.1:-49725260 | MS.gene64142:CDS |
| TGAGGAGTTGGAACGTGATT+TGG | 0.358402 | 5.1:-49727731 | MS.gene64142:CDS |
| CAATCCATCGACCACTCTTT+AGG | 0.359406 | 5.1:-49728172 | MS.gene64142:CDS |
| TACCTTGGCAGATGTACTAT+TGG | 0.369909 | 5.1:+49725168 | None:intergenic |
| TGATTTGGTTATGTATCAAT+TGG | 0.376004 | 5.1:-49727716 | MS.gene64142:CDS |
| GTCGAGGGTTTGGGAGGAGA+TGG | 0.389737 | 5.1:+49728144 | None:intergenic |
| GTTGGAGCATTGTAGAAAAC+TGG | 0.391511 | 5.1:-49727848 | MS.gene64142:CDS |
| TACTAAGGTTGACTCTTCTT+CGG | 0.416932 | 5.1:-49726354 | MS.gene64142:intron |
| GAAAGGAGTCATACAGAATC+TGG | 0.419296 | 5.1:-49725202 | MS.gene64142:CDS |
| TGAGCTACTTATCTTCGAAC+TGG | 0.441513 | 5.1:+49725029 | None:intergenic |
| ATGAAGCTGAAGAACGAGCC+AGG | 0.443465 | 5.1:-49727771 | MS.gene64142:CDS |
| TGAAAATAGCATATTGGAAA+AGG | 0.455763 | 5.1:-49725254 | MS.gene64142:CDS |
| AGCTCGCAAACACGCCTCCC+TGG | 0.457874 | 5.1:+49727753 | None:intergenic |
| TCGAGGGTTTGGGAGGAGAT+GGG | 0.471014 | 5.1:+49728145 | None:intergenic |
| TCTTCTTCGGCAAGCACACA+TGG | 0.474846 | 5.1:-49726341 | MS.gene64142:CDS |
| TGAATTGATGTCTCTAGAAA+AGG | 0.480662 | 5.1:-49725426 | MS.gene64142:CDS |
| AAGTAGCTCAATGGCGAAGA+AGG | 0.490604 | 5.1:-49725016 | MS.gene64142:CDS |
| ATGTCGCCATGAGAATGAAT+TGG | 0.497094 | 5.1:-49727683 | MS.gene64142:intron |
| CGAACTTATTGAACAATCCA+AGG | 0.511983 | 5.1:-49728038 | MS.gene64142:intron |
| ATGTACAGAGTTACTTTGCA+AGG | 0.512458 | 5.1:+49724945 | None:intergenic |
| TAGTAATGAAATACAAGGAA+AGG | 0.521881 | 5.1:-49725219 | MS.gene64142:CDS |
| ATGATACCAATTCATTCTCA+TGG | 0.531842 | 5.1:+49727677 | None:intergenic |
| TTGGCAGATGTACTATTGGT+AGG | 0.541731 | 5.1:+49725172 | None:intergenic |
| GGCTATAAAGAAGTTTGTTG+AGG | 0.542606 | 5.1:-49727905 | MS.gene64142:CDS |
| GGAGTGAAGCGTTCTGATCA+CGG | 0.546049 | 5.1:+49728083 | None:intergenic |
| AGCGCGAAGCTTGATGTCGA+GGG | 0.547134 | 5.1:+49728129 | None:intergenic |
| TAACCTCGACAGAGCTGAAG+AGG | 0.559410 | 5.1:-49725384 | MS.gene64142:CDS |
| TGAAGCTGAAGAACGAGCCA+GGG | 0.559780 | 5.1:-49727770 | MS.gene64142:CDS |
| GTAGCTTAAAACAATCAACT+AGG | 0.561722 | 5.1:-49725469 | MS.gene64142:intron |
| AGCTGCTGTCAATGTGGAGC+GGG | 0.565123 | 5.1:-49726214 | MS.gene64142:intron |
| TTCGAAGATAAGTAGCTCAA+TGG | 0.565941 | 5.1:-49725025 | MS.gene64142:CDS |
| TGATGAAATCGTCGATTTCG+GGG | 0.567108 | 5.1:+49728197 | None:intergenic |
| GATGAAATCGTCGATTTCGG+GGG | 0.574596 | 5.1:+49728198 | None:intergenic |
| CTTGATGTCGAGGGTTTGGG+AGG | 0.585010 | 5.1:+49728138 | None:intergenic |
| TATTGGAAAAGGAGAACAGA+AGG | 0.588297 | 5.1:-49725243 | MS.gene64142:CDS |
| AAGCGCGAAGCTTGATGTCG+AGG | 0.591620 | 5.1:+49728128 | None:intergenic |
| GTGTTTGCGAGCTGAGGAGT+TGG | 0.593637 | 5.1:-49727743 | MS.gene64142:CDS |
| CTTCTTCGGCAAGCACACAT+GGG | 0.598949 | 5.1:-49726340 | MS.gene64142:CDS |
| CCTCGACAGAGCTGAAGAGG+AGG | 0.608059 | 5.1:-49725381 | MS.gene64142:intron |
| GCATTGTAGAAAACTGGAGA+AGG | 0.608246 | 5.1:-49727842 | MS.gene64142:CDS |
| GGAGGCGTGTTTGCGAGCTG+AGG | 0.613262 | 5.1:-49727749 | MS.gene64142:CDS |
| TACCAATAGTACATCTGCCA+AGG | 0.617685 | 5.1:-49725170 | MS.gene64142:intron |
| CCTCCTCTTCAGCTCTGTCG+AGG | 0.622887 | 5.1:+49725381 | None:intergenic |
| AGGAGTCATACAGAATCTGG+TGG | 0.628697 | 5.1:-49725199 | MS.gene64142:CDS |
| TGTACAGAGTTACTTTGCAA+GGG | 0.631169 | 5.1:+49724946 | None:intergenic |
| AAGGGTGACAATGCTTGTCT+AGG | 0.637696 | 5.1:+49724964 | None:intergenic |
| TTCTTCGGCAAGCACACATG+GGG | 0.638857 | 5.1:-49726339 | MS.gene64142:CDS |
| GGAGTCATACAGAATCTGGT+GGG | 0.641318 | 5.1:-49725198 | MS.gene64142:CDS |
| AAGACCTAAAGAGTGGTCGA+TGG | 0.643999 | 5.1:+49728168 | None:intergenic |
| AAGGTTAGTAATGAAATACA+AGG | 0.646189 | 5.1:-49725224 | MS.gene64142:CDS |
| GGTGGAGTGTGAGAATCTGT+TGG | 0.648638 | 5.1:-49727866 | MS.gene64142:CDS |
| TGAAGCATGTGCGAATGCGT+TGG | 0.663807 | 5.1:-49727926 | MS.gene64142:CDS |
| AGATGGGAAGACCTAAAGAG+TGG | 0.668747 | 5.1:+49728161 | None:intergenic |
| AGCTGAAGAACGAGCCAGGG+AGG | 0.676565 | 5.1:-49727767 | MS.gene64142:CDS |
| ATGAAATCGTCGATTTCGGG+GGG | 0.680612 | 5.1:+49728199 | None:intergenic |
| AGGAAGATGAATCTAGACAA+TGG | 0.688192 | 5.1:+49724912 | None:intergenic |
| AAGCTGCTGTCAATGTGGAG+CGG | 0.726336 | 5.1:-49726215 | MS.gene64142:CDS |
| AAGATGAATCTAGACAATGG+TGG | 0.735233 | 5.1:+49724915 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAATAAGTTGTTT+AGG | - | chr5.1:49725938-49725957 | MS.gene64142:intron | 10.0% |
| !! | TAAAAATAATAAGTTGTTTA+GGG | - | chr5.1:49725939-49725958 | MS.gene64142:intron | 10.0% |
| !!! | AAACTTTTTTCAAAAAATAA+AGG | + | chr5.1:49726133-49726152 | None:intergenic | 10.0% |
| !!! | ATATTTACTTTATTTTACTA+AGG | - | chr5.1:49726763-49726782 | MS.gene64142:intron | 10.0% |
| !! | AAAAATACAAACAAAAGATA+AGG | + | chr5.1:49725916-49725935 | None:intergenic | 15.0% |
| !! | AAAAGAATAATGTCAAAATA+AGG | + | chr5.1:49726988-49727007 | None:intergenic | 15.0% |
| !! | ATGCAGATTAATTATTTAAA+AGG | + | chr5.1:49728060-49728079 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTATTATAGAAAT+AGG | + | chr5.1:49727285-49727304 | None:intergenic | 15.0% |
| !! | ATTCCATATAATTCAAAAAC+TGG | + | chr5.1:49727813-49727832 | None:intergenic | 20.0% |
| !! | CAGATTAATTATTTAAAAGG+AGG | + | chr5.1:49728057-49728076 | None:intergenic | 20.0% |
| !! | CATCAGAGATATAAAAAAAT+TGG | + | chr5.1:49727013-49727032 | None:intergenic | 20.0% |
| !! | TTGAGATATTAATTGATTAG+TGG | - | chr5.1:49725522-49725541 | MS.gene64142:intron | 20.0% |
| !!! | AGTATTTGGAATTTCATTTT+TGG | - | chr5.1:49726185-49726204 | MS.gene64142:intron | 20.0% |
| !!! | CTTTTTCTTTAAGTTTTTGA+AGG | + | chr5.1:49725073-49725092 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTGTTTTGTTTT+TGG | - | chr5.1:49725177-49725196 | MS.gene64142:CDS | 20.0% |
| !!! | TTACTCTTCTTTATTTTTCA+AGG | - | chr5.1:49725138-49725157 | MS.gene64142:intron | 20.0% |
| !!! | TTTCCAGTTTTTGAATTATA+TGG | - | chr5.1:49727807-49727826 | MS.gene64142:CDS | 20.0% |
| ! | AAAAAGTCAACAATATAAGG+AGG | + | chr5.1:49727790-49727809 | None:intergenic | 25.0% |
| ! | AAATTCCAAATACTCAATGA+TGG | + | chr5.1:49726179-49726198 | None:intergenic | 25.0% |
| ! | AAGGTTAGTAATGAAATACA+AGG | - | chr5.1:49727908-49727927 | MS.gene64142:CDS | 25.0% |
| ! | AATAATTCATTATGCCCTTT+AGG | + | chr5.1:49727346-49727365 | None:intergenic | 25.0% |
| ! | AATTAGATTAAGCAGTATGT+TGG | + | chr5.1:49726527-49726546 | None:intergenic | 25.0% |
| ! | ACAAAATCCAAATGATAATC+AGG | + | chr5.1:49727645-49727664 | None:intergenic | 25.0% |
| ! | ACTACATAAACCAATGATTA+AGG | + | chr5.1:49725644-49725663 | None:intergenic | 25.0% |
| ! | ATCTGTTGAAAATAGCATAT+TGG | - | chr5.1:49727872-49727891 | MS.gene64142:CDS | 25.0% |
| ! | ATGATGCATACAAATACAAA+AGG | + | chr5.1:49727420-49727439 | None:intergenic | 25.0% |
| ! | ATGTTAATTAAGCAGTATGT+TGG | + | chr5.1:49726504-49726523 | None:intergenic | 25.0% |
| ! | ATTGAAAGATTTACGTACTA+TGG | + | chr5.1:49727371-49727390 | None:intergenic | 25.0% |
| ! | CAAAATCCAAATGATAATCA+GGG | + | chr5.1:49727644-49727663 | None:intergenic | 25.0% |
| ! | TAACCAATGTTGTAAAATTG+TGG | - | chr5.1:49727049-49727068 | MS.gene64142:intron | 25.0% |
| ! | TAGTAATGAAATACAAGGAA+AGG | - | chr5.1:49727913-49727932 | MS.gene64142:CDS | 25.0% |
| ! | TGAAAATAGCATATTGGAAA+AGG | - | chr5.1:49727878-49727897 | MS.gene64142:CDS | 25.0% |
| ! | TGATGCATACAAATACAAAA+GGG | + | chr5.1:49727419-49727438 | None:intergenic | 25.0% |
| ! | TGGAAAAAGTCAACAATATA+AGG | + | chr5.1:49727793-49727812 | None:intergenic | 25.0% |
| ! | TGTATCTTACACAAAAGATA+AGG | + | chr5.1:49725828-49725847 | None:intergenic | 25.0% |
| ! | TTTCACTAGAGTTAATCATT+TGG | - | chr5.1:49726721-49726740 | MS.gene64142:intron | 25.0% |
| !! | GAATTTTTCCTCTTAATTGA+TGG | - | chr5.1:49726104-49726123 | MS.gene64142:intron | 25.0% |
| !! | GTCTTCTACATATGAATTTT+TGG | - | chr5.1:49726865-49726884 | MS.gene64142:intron | 25.0% |
| !! | TGTTTAGGGTTATTTCATTT+GGG | - | chr5.1:49725953-49725972 | MS.gene64142:intron | 25.0% |
| !! | TTGTTTAGGGTTATTTCATT+TGG | - | chr5.1:49725952-49725971 | MS.gene64142:intron | 25.0% |
| !! | TTTTACTTGAAAGTCATATG+AGG | - | chr5.1:49726219-49726238 | MS.gene64142:CDS | 25.0% |
| !!! | TGATTTGGTTATGTATCAAT+TGG | - | chr5.1:49725416-49725435 | MS.gene64142:CDS | 25.0% |
| AGAACTTATCTGTTTCATTC+AGG | + | chr5.1:49726030-49726049 | None:intergenic | 30.0% | |
| ATATCAGTAGCTAACATTCA+TGG | + | chr5.1:49726747-49726766 | None:intergenic | 30.0% | |
| ATGATACCAATTCATTCTCA+TGG | + | chr5.1:49725458-49725477 | None:intergenic | 30.0% | |
| ATTTCCCTAATAGAGAAACT+AGG | + | chr5.1:49727144-49727163 | None:intergenic | 30.0% | |
| ATTTCGAGATTAGAGAGAAA+GGG | + | chr5.1:49726688-49726707 | None:intergenic | 30.0% | |
| CAATGTCTCAAGATACTAAT+GGG | + | chr5.1:49726556-49726575 | None:intergenic | 30.0% | |
| CATACAAATACAAAAGGGAA+TGG | + | chr5.1:49727414-49727433 | None:intergenic | 30.0% | |
| CCAAATCCAAATTCAAATGA+GGG | + | chr5.1:49726420-49726439 | None:intergenic | 30.0% | |
| GAAAGATTTGAAAGAAACCT+TGG | + | chr5.1:49725114-49725133 | None:intergenic | 30.0% | |
| GAACTTATCTGTTTCATTCA+GGG | + | chr5.1:49726029-49726048 | None:intergenic | 30.0% | |
| GCAGTAAATATGTAACAATC+AGG | - | chr5.1:49727589-49727608 | MS.gene64142:intron | 30.0% | |
| GTAGCTTAAAACAATCAACT+AGG | - | chr5.1:49727663-49727682 | MS.gene64142:intron | 30.0% | |
| GTGTTATCAATAGCATATTG+TGG | + | chr5.1:49727568-49727587 | None:intergenic | 30.0% | |
| TAGCATATTGTGGAAAATAG+CGG | + | chr5.1:49727558-49727577 | None:intergenic | 30.0% | |
| TATTTCGAGATTAGAGAGAA+AGG | + | chr5.1:49726689-49726708 | None:intergenic | 30.0% | |
| TCAATGTCTCAAGATACTAA+TGG | + | chr5.1:49726557-49726576 | None:intergenic | 30.0% | |
| TGGACTACTACTACTATAAT+AGG | - | chr5.1:49726632-49726651 | MS.gene64142:intron | 30.0% | |
| TGTGTACATACCTTAATCAT+TGG | - | chr5.1:49725631-49725650 | MS.gene64142:intron | 30.0% | |
| TGTTGAGGAGAATCAAAAAT+TGG | - | chr5.1:49725242-49725261 | MS.gene64142:CDS | 30.0% | |
| TTACAACCCTGATTATCATT+TGG | - | chr5.1:49727635-49727654 | MS.gene64142:intron | 30.0% | |
| TTCTCTCTAATCTCGAAATA+TGG | - | chr5.1:49726689-49726708 | MS.gene64142:intron | 30.0% | |
| TTGTAAAATTGTGGTGATAG+CGG | - | chr5.1:49727058-49727077 | MS.gene64142:intron | 30.0% | |
| TTTCTCTATTAGGGAAATAG+CGG | - | chr5.1:49727146-49727165 | MS.gene64142:intron | 30.0% | |
| ! | ACAGATAATAATTTGCCCTA+TGG | + | chr5.1:49727858-49727877 | None:intergenic | 30.0% |
| ! | CAGATAAGTTCTGACATATT+AGG | - | chr5.1:49726038-49726057 | MS.gene64142:intron | 30.0% |
| ! | TCACCACAATTTTACAACAT+TGG | + | chr5.1:49727055-49727074 | None:intergenic | 30.0% |
| ! | TGAATTGATGTCTCTAGAAA+AGG | - | chr5.1:49727706-49727725 | MS.gene64142:CDS | 30.0% |
| ! | TTGGTTAATTGTCTAGAACA+TGG | + | chr5.1:49727036-49727055 | None:intergenic | 30.0% |
| !! | TTTGATGAAATCGTCGATTT+CGG | + | chr5.1:49724940-49724959 | None:intergenic | 30.0% |
| !! | TTTTGATAGTACATTCACTC+AGG | - | chr5.1:49726342-49726361 | MS.gene64142:CDS | 30.0% |
| !!! | TAAATCACCTAGTGGATTTT+AGG | - | chr5.1:49727528-49727547 | MS.gene64142:intron | 30.0% |
| AAACTTGACAAGAGAGTAAG+AGG | + | chr5.1:49726965-49726984 | None:intergenic | 35.0% | |
| AAAGGACACCATCAATTAAG+AGG | + | chr5.1:49726115-49726134 | None:intergenic | 35.0% | |
| AAATCCACTAGGTGATTTAG+TGG | + | chr5.1:49727527-49727546 | None:intergenic | 35.0% | |
| AAATTCTGTTACCACAGGTA+AGG | + | chr5.1:49726090-49726109 | None:intergenic | 35.0% | |
| AACTTAGCAGTACCACAATT+TGG | + | chr5.1:49726601-49726620 | None:intergenic | 35.0% | |
| ACAAATACAAAAGGGAATGG+AGG | + | chr5.1:49727411-49727430 | None:intergenic | 35.0% | |
| AGCGGAAAAATGAGAATCTT+AGG | - | chr5.1:49727207-49727226 | MS.gene64142:intron | 35.0% | |
| AGGAAAAATTCTGTTACCAC+AGG | + | chr5.1:49726095-49726114 | None:intergenic | 35.0% | |
| ATAGTAGTAGTAGTCCAAGT+TGG | + | chr5.1:49726629-49726648 | None:intergenic | 35.0% | |
| ATTAGGATTCAAACCAGACA+TGG | - | chr5.1:49726055-49726074 | MS.gene64142:intron | 35.0% | |
| CCCTCATTTGAATTTGGATT+TGG | - | chr5.1:49726417-49726436 | MS.gene64142:intron | 35.0% | |
| CGAACTTATTGAACAATCCA+AGG | - | chr5.1:49725094-49725113 | MS.gene64142:intron | 35.0% | |
| GCCAAATCCAAATTCAAATG+AGG | + | chr5.1:49726421-49726440 | None:intergenic | 35.0% | |
| TAGTAGTAGTAGTCCAAGTT+GGG | + | chr5.1:49726628-49726647 | None:intergenic | 35.0% | |
| TATTGGAAAAGGAGAACAGA+AGG | - | chr5.1:49727889-49727908 | MS.gene64142:CDS | 35.0% | |
| TCTAATCTCGAAATATGGCT+AGG | - | chr5.1:49726694-49726713 | MS.gene64142:intron | 35.0% | |
| TGAGGAGAATCAAAAATTGG+CGG | - | chr5.1:49725245-49725264 | MS.gene64142:CDS | 35.0% | |
| TGCTTACCCTCATTTGAATT+TGG | - | chr5.1:49726411-49726430 | MS.gene64142:intron | 35.0% | |
| TGTTAGATGAAATGCATTGC+AGG | + | chr5.1:49726480-49726499 | None:intergenic | 35.0% | |
| TGTTGGATTTCTCATGCAAA+AGG | - | chr5.1:49726258-49726277 | MS.gene64142:CDS | 35.0% | |
| TTATCTGTTTCATTCAGGGA+AGG | + | chr5.1:49726025-49726044 | None:intergenic | 35.0% | |
| TTCGAAGATAAGTAGCTCAA+TGG | - | chr5.1:49728107-49728126 | MS.gene64142:CDS | 35.0% | |
| ! | ACACCTTCAATTAGAAGTGT+TGG | + | chr5.1:49725713-49725732 | None:intergenic | 35.0% |
| ! | ATGTACAGAGTTACTTTGCA+AGG | + | chr5.1:49728190-49728209 | None:intergenic | 35.0% |
| ! | ATTTGGGATACTGTTTAGTG+AGG | - | chr5.1:49725969-49725988 | MS.gene64142:intron | 35.0% |
| ! | TACTAAGGTTGACTCTTCTT+CGG | - | chr5.1:49726778-49726797 | MS.gene64142:intron | 35.0% |
| ! | TGTACAGAGTTACTTTGCAA+GGG | + | chr5.1:49728189-49728208 | None:intergenic | 35.0% |
| ! | TTTGGGATACTGTTTAGTGA+GGG | - | chr5.1:49725970-49725989 | MS.gene64142:intron | 35.0% |
| !! | AAAAGGACAAAGAGCATCTA+AGG | - | chr5.1:49727723-49727742 | MS.gene64142:CDS | 35.0% |
| !! | GGCTATAAAGAAGTTTGTTG+AGG | - | chr5.1:49725227-49725246 | MS.gene64142:CDS | 35.0% |
| !! | TTAGCTTGGTGTAAACCATA+GGG | - | chr5.1:49727840-49727859 | MS.gene64142:CDS | 35.0% |
| !! | TTGATGAAATCGTCGATTTC+GGG | + | chr5.1:49724939-49724958 | None:intergenic | 35.0% |
| AAGGACTTGTAAACCATGTC+TGG | + | chr5.1:49726071-49726090 | None:intergenic | 40.0% | |
| AATCTCGAAATATGGCTAGG+TGG | - | chr5.1:49726697-49726716 | MS.gene64142:intron | 40.0% | |
| ACCGTCCTAGTTTCTCTATT+AGG | - | chr5.1:49727136-49727155 | MS.gene64142:intron | 40.0% | |
| ACTATGGCGCTATAATCTAG+TGG | - | chr5.1:49727082-49727101 | MS.gene64142:intron | 40.0% | |
| ATCGAGTATTACTCACCTGA+CGG | - | chr5.1:49727314-49727333 | MS.gene64142:intron | 40.0% | |
| ATGTCGCCATGAGAATGAAT+TGG | - | chr5.1:49725449-49725468 | MS.gene64142:CDS | 40.0% | |
| CCCTAATAGAGAAACTAGGA+CGG | + | chr5.1:49727140-49727159 | None:intergenic | 40.0% | |
| CCGTCCTAGTTTCTCTATTA+GGG | - | chr5.1:49727137-49727156 | MS.gene64142:intron | 40.0% | |
| CTATCCACTAAATCACCTAG+TGG | - | chr5.1:49727520-49727539 | MS.gene64142:intron | 40.0% | |
| CTGCCAAGGTAAGAATCATA+GGG | - | chr5.1:49727976-49727995 | MS.gene64142:intron | 40.0% | |
| GAAAGGAGTCATACAGAATC+TGG | - | chr5.1:49727930-49727949 | MS.gene64142:CDS | 40.0% | |
| GAGAAATCCAACAATAGCTC+AGG | + | chr5.1:49726251-49726270 | None:intergenic | 40.0% | |
| GCACCAACACTTCTAATTGA+AGG | - | chr5.1:49725707-49725726 | MS.gene64142:intron | 40.0% | |
| GCATTGTAGAAAACTGGAGA+AGG | - | chr5.1:49725290-49725309 | MS.gene64142:intron | 40.0% | |
| GTAAAAAGCTGCTGTCAATG+TGG | - | chr5.1:49726912-49726931 | MS.gene64142:intron | 40.0% | |
| TACCAATAGTACATCTGCCA+AGG | - | chr5.1:49727962-49727981 | MS.gene64142:intron | 40.0% | |
| TACCTTGGCAGATGTACTAT+TGG | + | chr5.1:49727967-49727986 | None:intergenic | 40.0% | |
| TCTGCCAAGGTAAGAATCAT+AGG | - | chr5.1:49727975-49727994 | MS.gene64142:intron | 40.0% | |
| TGAGCTACTTATCTTCGAAC+TGG | + | chr5.1:49728106-49728125 | None:intergenic | 40.0% | |
| TGCCAAGGTAAGAATCATAG+GGG | - | chr5.1:49727977-49727996 | MS.gene64142:intron | 40.0% | |
| TGCTAAGTTATGACCCAACT+TGG | - | chr5.1:49726612-49726631 | MS.gene64142:intron | 40.0% | |
| TGCTACATACTGCCAAATTG+TGG | - | chr5.1:49726586-49726605 | MS.gene64142:intron | 40.0% | |
| TTGGCAGATGTACTATTGGT+AGG | + | chr5.1:49727963-49727982 | None:intergenic | 40.0% | |
| TTGGGATACTGTTTAGTGAG+GGG | - | chr5.1:49725971-49725990 | MS.gene64142:intron | 40.0% | |
| ! | ATGGAATGACTGACTTAGCT+TGG | - | chr5.1:49727826-49727845 | MS.gene64142:CDS | 40.0% |
| ! | CAAATACTCAATGATGGAGC+CGG | + | chr5.1:49726173-49726192 | None:intergenic | 40.0% |
| ! | CTGATCACGGAGATTTTGTT+CGG | + | chr5.1:49725039-49725058 | None:intergenic | 40.0% |
| !! | CTTAGCTTGGTGTAAACCAT+AGG | - | chr5.1:49727839-49727858 | MS.gene64142:CDS | 40.0% |
| !! | GAGTTTGCTTGACTCTCTTT+TGG | - | chr5.1:49726820-49726839 | MS.gene64142:intron | 40.0% |
| !! | GTTGGAGCATTGTAGAAAAC+TGG | - | chr5.1:49725284-49725303 | MS.gene64142:intron | 40.0% |
| !! | TAGTGGTGTTGTGTTGCTTA+GGG | - | chr5.1:49725539-49725558 | MS.gene64142:intron | 40.0% |
| !! | TGATGAAATCGTCGATTTCG+GGG | + | chr5.1:49724938-49724957 | None:intergenic | 40.0% |
| !! | TTAGTGGTGTTGTGTTGCTT+AGG | - | chr5.1:49725538-49725557 | MS.gene64142:intron | 40.0% |
| AAGACCTAAAGAGTGGTCGA+TGG | + | chr5.1:49724967-49724986 | None:intergenic | 45.0% | |
| AAGCTTGATGTCGAGGGTTT+GGG | + | chr5.1:49725000-49725019 | None:intergenic | 45.0% | |
| AAGGGTGACAATGCTTGTCT+AGG | + | chr5.1:49728171-49728190 | None:intergenic | 45.0% | |
| AAGTAGCTCAATGGCGAAGA+AGG | - | chr5.1:49728116-49728135 | MS.gene64142:CDS | 45.0% | |
| AGATGGGAAGACCTAAAGAG+TGG | + | chr5.1:49724974-49724993 | None:intergenic | 45.0% | |
| AGGAGTCATACAGAATCTGG+TGG | - | chr5.1:49727933-49727952 | MS.gene64142:intron | 45.0% | |
| CAATCCATCGACCACTCTTT+AGG | - | chr5.1:49724960-49724979 | MS.gene64142:CDS | 45.0% | |
| CACCCCTATGATTCTTACCT+TGG | + | chr5.1:49727982-49728001 | None:intergenic | 45.0% | |
| CGGAATGCCTAAAATCCACT+AGG | + | chr5.1:49727538-49727557 | None:intergenic | 45.0% | |
| CGGCTCCATCATTGAGTATT+TGG | - | chr5.1:49726171-49726190 | MS.gene64142:intron | 45.0% | |
| GATACTGTTTAGTGAGGGGA+AGG | - | chr5.1:49725975-49725994 | MS.gene64142:intron | 45.0% | |
| GGAGAATCAAAAATTGGCGG+TGG | - | chr5.1:49725248-49725267 | MS.gene64142:CDS | 45.0% | |
| GGAGTCATACAGAATCTGGT+GGG | - | chr5.1:49727934-49727953 | MS.gene64142:intron | 45.0% | |
| GGTTTACAAGTCCTTACCTG+TGG | - | chr5.1:49726076-49726095 | MS.gene64142:intron | 45.0% | |
| GTTTAGTGAGGGGAAGGAAA+GGG | - | chr5.1:49725981-49726000 | MS.gene64142:intron | 45.0% | |
| TCGAGTATTACTCACCTGAC+GGG | - | chr5.1:49727315-49727334 | MS.gene64142:intron | 45.0% | |
| TGAGGAGTTGGAACGTGATT+TGG | - | chr5.1:49725401-49725420 | MS.gene64142:CDS | 45.0% | |
| TGGATAGCGTTGCAGGAAAA+TGG | + | chr5.1:49727507-49727526 | None:intergenic | 45.0% | |
| TGTTTAGTGAGGGGAAGGAA+AGG | - | chr5.1:49725980-49725999 | MS.gene64142:intron | 45.0% | |
| TGTTTCATTCAGGGAAGGCT+TGG | + | chr5.1:49726020-49726039 | None:intergenic | 45.0% | |
| ! | GATTTAGTGGATAGCGTTGC+AGG | + | chr5.1:49727514-49727533 | None:intergenic | 45.0% |
| !! | ATGAAATCGTCGATTTCGGG+GGG | + | chr5.1:49724936-49724955 | None:intergenic | 45.0% |
| !! | GATGAAATCGTCGATTTCGG+GGG | + | chr5.1:49724937-49724956 | None:intergenic | 45.0% |
| !! | GTGTTGTGTTGCTTAGGGAA+TGG | - | chr5.1:49725544-49725563 | MS.gene64142:intron | 45.0% |
| AAGCTGCTGTCAATGTGGAG+CGG | - | chr5.1:49726917-49726936 | MS.gene64142:intron | 50.0% | |
| ATGAAGCTGAAGAACGAGCC+AGG | - | chr5.1:49725361-49725380 | MS.gene64142:intron | 50.0% | |
| CTTCTTCGGCAAGCACACAT+GGG | - | chr5.1:49726792-49726811 | MS.gene64142:intron | 50.0% | |
| GAAGCTTGATGTCGAGGGTT+TGG | + | chr5.1:49725001-49725020 | None:intergenic | 50.0% | |
| GCGTCTTCCTGAGCTATTGT+TGG | - | chr5.1:49726241-49726260 | MS.gene64142:CDS | 50.0% | |
| GGTGGAGTGTGAGAATCTGT+TGG | - | chr5.1:49725266-49725285 | MS.gene64142:CDS | 50.0% | |
| TAACCTCGACAGAGCTGAAG+AGG | - | chr5.1:49727748-49727767 | MS.gene64142:CDS | 50.0% | |
| TCTTCTTCGGCAAGCACACA+TGG | - | chr5.1:49726791-49726810 | MS.gene64142:intron | 50.0% | |
| TGAAGCATGTGCGAATGCGT+TGG | - | chr5.1:49725206-49725225 | MS.gene64142:CDS | 50.0% | |
| TGAAGCTGAAGAACGAGCCA+GGG | - | chr5.1:49725362-49725381 | MS.gene64142:intron | 50.0% | |
| TGAGGGGAAGGAAAGGGAAA+GGG | - | chr5.1:49725987-49726006 | MS.gene64142:intron | 50.0% | |
| TTCCCCAAGACTTCGAAGTC+CGG | - | chr5.1:49726151-49726170 | MS.gene64142:intron | 50.0% | |
| TTCTTCGGCAAGCACACATG+GGG | - | chr5.1:49726793-49726812 | MS.gene64142:intron | 50.0% | |
| ! | GGAGTGAAGCGTTCTGATCA+CGG | + | chr5.1:49725052-49725071 | None:intergenic | 50.0% |
| !! | ACCTGACGGGCTATTCCTAA+AGG | - | chr5.1:49727328-49727347 | MS.gene64142:intron | 50.0% |
| !! | CCTGACGGGCTATTCCTAAA+GGG | - | chr5.1:49727329-49727348 | MS.gene64142:intron | 50.0% |
| !! | TTGTGGTGATAGCGGCACTA+TGG | - | chr5.1:49727066-49727085 | MS.gene64142:intron | 50.0% |
| AAGCGCGAAGCTTGATGTCG+AGG | + | chr5.1:49725007-49725026 | None:intergenic | 55.0% | |
| ACAGAGCTGAAGAGGAGGTG+AGG | - | chr5.1:49727756-49727775 | MS.gene64142:CDS | 55.0% | |
| AGCCGGACTTCGAAGTCTTG+GGG | + | chr5.1:49726156-49726175 | None:intergenic | 55.0% | |
| AGCGCGAAGCTTGATGTCGA+GGG | + | chr5.1:49725006-49725025 | None:intergenic | 55.0% | |
| AGCTGCTGTCAATGTGGAGC+GGG | - | chr5.1:49726918-49726937 | MS.gene64142:intron | 55.0% | |
| CTTGATGTCGAGGGTTTGGG+AGG | + | chr5.1:49724997-49725016 | None:intergenic | 55.0% | |
| GAGCCGGACTTCGAAGTCTT+GGG | + | chr5.1:49726157-49726176 | None:intergenic | 55.0% | |
| GGCTGATGTAGCGACAGTAG+CGG | - | chr5.1:49727189-49727208 | MS.gene64142:intron | 55.0% | |
| GTGAGGGGAAGGAAAGGGAA+AGG | - | chr5.1:49725986-49726005 | MS.gene64142:intron | 55.0% | |
| GTGTTTGCGAGCTGAGGAGT+TGG | - | chr5.1:49725389-49725408 | MS.gene64142:CDS | 55.0% | |
| TCGAGGGTTTGGGAGGAGAT+GGG | + | chr5.1:49724990-49725009 | None:intergenic | 55.0% | |
| ! | CCCTTTAGGAATAGCCCGTC+AGG | + | chr5.1:49727332-49727351 | None:intergenic | 55.0% |
| ! | GAGAAACTAGGACGGTGTCG+TGG | + | chr5.1:49727132-49727151 | None:intergenic | 55.0% |
| AGCTGAAGAACGAGCCAGGG+AGG | - | chr5.1:49725365-49725384 | MS.gene64142:intron | 60.0% | |
| CCTCCTCTTCAGCTCTGTCG+AGG | + | chr5.1:49727754-49727773 | None:intergenic | 60.0% | |
| CCTCGACAGAGCTGAAGAGG+AGG | - | chr5.1:49727751-49727770 | MS.gene64142:CDS | 60.0% | |
| CTGTCAATGTGGAGCGGGTG+AGG | - | chr5.1:49726923-49726942 | MS.gene64142:intron | 60.0% | |
| GCCAGTAGAAGCCTGAGCAG+CGG | + | chr5.1:49727172-49727191 | None:intergenic | 60.0% | |
| GGAGCCGGACTTCGAAGTCT+TGG | + | chr5.1:49726158-49726177 | None:intergenic | 60.0% | |
| GTCGAGGGTTTGGGAGGAGA+TGG | + | chr5.1:49724991-49725010 | None:intergenic | 60.0% | |
| AGCTCGCAAACACGCCTCCC+TGG | + | chr5.1:49725382-49725401 | None:intergenic | 65.0% | |
| GCCGCTGCTCAGGCTTCTAC+TGG | - | chr5.1:49727168-49727187 | MS.gene64142:intron | 65.0% | |
| GGAAATAGCGGCCGCTGCTC+AGG | - | chr5.1:49727158-49727177 | MS.gene64142:intron | 65.0% | |
| ! | GGAGGCGTGTTTGCGAGCTG+AGG | - | chr5.1:49725383-49725402 | MS.gene64142:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 49724924 | 49728230 | 49724924 | ID=MS.gene64142 |
| chr5.1 | mRNA | 49724924 | 49728230 | 49724924 | ID=MS.gene64142.t1;Parent=MS.gene64142 |
| chr5.1 | exon | 49728039 | 49728230 | 49728039 | ID=MS.gene64142.t1.exon1;Parent=MS.gene64142.t1 |
| chr5.1 | CDS | 49728039 | 49728230 | 49728039 | ID=cds.MS.gene64142.t1;Parent=MS.gene64142.t1 |
| chr5.1 | exon | 49727684 | 49727950 | 49727684 | ID=MS.gene64142.t1.exon2;Parent=MS.gene64142.t1 |
| chr5.1 | CDS | 49727684 | 49727950 | 49727684 | ID=cds.MS.gene64142.t1;Parent=MS.gene64142.t1 |
| chr5.1 | exon | 49726215 | 49726369 | 49726215 | ID=MS.gene64142.t1.exon3;Parent=MS.gene64142.t1 |
| chr5.1 | CDS | 49726215 | 49726369 | 49726215 | ID=cds.MS.gene64142.t1;Parent=MS.gene64142.t1 |
| chr5.1 | exon | 49725382 | 49725487 | 49725382 | ID=MS.gene64142.t1.exon4;Parent=MS.gene64142.t1 |
| chr5.1 | CDS | 49725382 | 49725487 | 49725382 | ID=cds.MS.gene64142.t1;Parent=MS.gene64142.t1 |
| chr5.1 | exon | 49725171 | 49725293 | 49725171 | ID=MS.gene64142.t1.exon5;Parent=MS.gene64142.t1 |
| chr5.1 | CDS | 49725171 | 49725293 | 49725171 | ID=cds.MS.gene64142.t1;Parent=MS.gene64142.t1 |
| chr5.1 | exon | 49724924 | 49725067 | 49724924 | ID=MS.gene64142.t1.exon6;Parent=MS.gene64142.t1 |
| chr5.1 | CDS | 49724924 | 49725067 | 49724924 | ID=cds.MS.gene64142.t1;Parent=MS.gene64142.t1 |
| Gene Sequence |
| Protein sequence |
