Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050071.t1 | XP_024639431.1 | 89.9 | 328 | 32 | 1 | 1 | 328 | 1 | 327 | 3.10E-148 | 534.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050071.t1 | A0A396HXP9 | 89.9 | 328 | 32 | 1 | 1 | 328 | 1 | 327 | 2.3e-148 | 534.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049596 | MS.gene050071 | 0.821437 | 4.04E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene050297 | 0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene054643 | 0.832272 | 1.04E-55 | -1.69E-46 |
| MS.gene050071 | MS.gene055331 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene056266 | -0.803343 | 3.65E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene061773 | 0.802581 | 5.24E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene061774 | 0.809263 | 2.06E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene061775 | 0.823401 | 1.41E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene063145 | 0.82432 | 8.61E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene063162 | 0.803247 | 3.82E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene064622 | 0.832295 | 1.03E-55 | -1.69E-46 |
| MS.gene050071 | MS.gene066010 | 0.826667 | 2.39E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene066031 | 0.822138 | 2.78E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene066358 | 0.835704 | 1.44E-56 | -1.69E-46 |
| MS.gene050071 | MS.gene066877 | 0.804287 | 2.32E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene067030 | 0.831996 | 1.22E-55 | -1.69E-46 |
| MS.gene050071 | MS.gene069090 | 0.808687 | 2.74E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene072351 | 0.838488 | 2.79E-57 | -1.69E-46 |
| MS.gene050071 | MS.gene072697 | 0.825718 | 4.02E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene074420 | 0.810082 | 1.38E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene22696 | 0.81585 | 7.49E-52 | -1.69E-46 |
| MS.gene050071 | MS.gene25885 | 0.811739 | 6.02E-51 | -1.69E-46 |
| MS.gene050071 | MS.gene27047 | 0.833403 | 5.44E-56 | -1.69E-46 |
| MS.gene050071 | MS.gene28079 | 0.80887 | 2.50E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene38118 | 0.838532 | 2.72E-57 | -1.69E-46 |
| MS.gene050071 | MS.gene38714 | 0.825419 | 4.74E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene38829 | 0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene050071 | MS.gene40035 | 0.819774 | 9.73E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene42665 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene050071 | MS.gene44024 | 0.814953 | 1.18E-51 | -1.69E-46 |
| MS.gene050071 | MS.gene52975 | 0.843396 | 1.44E-58 | -1.69E-46 |
| MS.gene050071 | MS.gene52996 | 0.842012 | 3.35E-58 | -1.69E-46 |
| MS.gene050071 | MS.gene54302 | 0.823164 | 1.60E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene57289 | 0.808614 | 2.84E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene58096 | 0.856684 | 2.72E-62 | -1.69E-46 |
| MS.gene050071 | MS.gene58836 | 0.800093 | 1.69E-48 | -1.69E-46 |
| MS.gene050071 | MS.gene59357 | 0.800873 | 1.17E-48 | -1.69E-46 |
| MS.gene050071 | MS.gene62896 | 0.848836 | 4.76E-60 | -1.69E-46 |
| MS.gene050071 | MS.gene63996 | 0.816558 | 5.20E-52 | -1.69E-46 |
| MS.gene050071 | MS.gene64142 | 0.884141 | 2.47E-71 | -1.69E-46 |
| MS.gene050071 | MS.gene66156 | 0.819517 | 1.11E-52 | -1.69E-46 |
| MS.gene050071 | MS.gene66158 | 0.820325 | 7.28E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene66159 | 0.826185 | 3.12E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene68060 | 0.805215 | 1.49E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene68200 | 0.831004 | 2.13E-55 | -1.69E-46 |
| MS.gene050071 | MS.gene68217 | 0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene050071 | MS.gene68793 | 0.829128 | 6.12E-55 | -1.69E-46 |
| MS.gene050071 | MS.gene70240 | 0.854461 | 1.21E-61 | -1.69E-46 |
| MS.gene050071 | MS.gene70561 | 0.81091 | 9.11E-51 | -1.69E-46 |
| MS.gene050071 | MS.gene70804 | 0.830168 | 3.42E-55 | -1.69E-46 |
| MS.gene050071 | MS.gene70896 | 0.826698 | 2.35E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene70898 | 0.83231 | 1.02E-55 | -1.69E-46 |
| MS.gene050071 | MS.gene71419 | 0.827365 | 1.63E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene71941 | 0.821897 | 3.16E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene75579 | 0.820279 | 7.46E-53 | -1.69E-46 |
| MS.gene050071 | MS.gene78972 | 0.824909 | 6.25E-54 | -1.69E-46 |
| MS.gene050071 | MS.gene80180 | 0.810288 | 1.24E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene83234 | 0.810682 | 1.02E-50 | -1.69E-46 |
| MS.gene050071 | MS.gene90636 | 0.806133 | 9.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050071.t1 | MTR_5g064800 | 62.290 | 297 | 48 | 4 | 30 | 323 | 56 | 291 | 2.13e-80 | 250 |
| MS.gene050071.t1 | MTR_3g099600 | 48.883 | 358 | 128 | 5 | 1 | 321 | 1 | 340 | 1.02e-76 | 239 |
| MS.gene050071.t1 | MTR_5g064760 | 41.071 | 168 | 82 | 6 | 137 | 294 | 54 | 214 | 1.25e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050071.t1 | AT4G09060 | 45.820 | 323 | 164 | 4 | 2 | 320 | 18 | 333 | 2.21e-76 | 238 |
| MS.gene050071.t1 | AT4G09060 | 42.693 | 349 | 163 | 5 | 2 | 320 | 18 | 359 | 4.30e-72 | 228 |
| MS.gene050071.t1 | AT1G14680 | 44.262 | 305 | 144 | 6 | 1 | 301 | 1 | 283 | 5.52e-66 | 209 |
Find 67 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGAAATCGTCGATTTC+GGG | 0.204833 | 5.4:+50486504 | None:intergenic |
| TTTGATGAAATCGTCGATTT+CGG | 0.249397 | 5.4:+50486503 | None:intergenic |
| GAAGCTTGATGTCGAGGGTT+TGG | 0.291158 | 5.4:+50486442 | None:intergenic |
| TGTTGAGGAGAATCAGAAAT+TGG | 0.314355 | 5.4:-50486196 | MS.gene050071:CDS |
| AAGCTTGATGTCGAGGGTTT+GGG | 0.319462 | 5.4:+50486443 | None:intergenic |
| AAAAGGACAAAGAGCATCTA+AGG | 0.339255 | 5.4:-50483575 | MS.gene050071:CDS |
| GAGTTTGCTTGACTCTCTTT+TGG | 0.341432 | 5.4:-50484618 | MS.gene050071:CDS |
| ATCTGTTGAAAATAGCATAT+TGG | 0.342998 | 5.4:-50483387 | MS.gene050071:CDS |
| TGAGGAGTTGGAACGTGATT+TGG | 0.358402 | 5.4:-50486037 | MS.gene050071:CDS |
| TACCTTGGCAGATGTACTAT+TGG | 0.369909 | 5.4:+50483295 | None:intergenic |
| TGATTTGGTTATGTATCAAT+TGG | 0.376004 | 5.4:-50486022 | MS.gene050071:CDS |
| GTCGAGGGTTTGGGAGGAGA+TGG | 0.389737 | 5.4:+50486452 | None:intergenic |
| GTTGGAGCATTGTAGAAAAC+TGG | 0.391511 | 5.4:-50486154 | MS.gene050071:CDS |
| TACTAAGGTTGACTCTTCTT+CGG | 0.416932 | 5.4:-50484660 | MS.gene050071:intron |
| GAAAGGAGTCATACAGAATC+TGG | 0.419296 | 5.4:-50483329 | MS.gene050071:CDS |
| CAATCCATCGACCACTCATT+AGG | 0.420092 | 5.4:-50486480 | MS.gene050071:CDS |
| TGAGCTACTTATCTTCGAAC+TGG | 0.441513 | 5.4:+50483151 | None:intergenic |
| ATGAAGCTGAAGAACGAGCC+AGG | 0.443465 | 5.4:-50486077 | MS.gene050071:CDS |
| TGAAAATAGCATATTGGAAA+AGG | 0.455763 | 5.4:-50483381 | MS.gene050071:CDS |
| AGCTCGCAAACACGCCTCCC+TGG | 0.457874 | 5.4:+50486059 | None:intergenic |
| TCGAGGGTTTGGGAGGAGAT+GGG | 0.471014 | 5.4:+50486453 | None:intergenic |
| TCTTCTTCGGCAAGCACACA+TGG | 0.474846 | 5.4:-50484647 | MS.gene050071:CDS |
| TGAATTGATGTCTCTAGAAA+AGG | 0.480662 | 5.4:-50483592 | MS.gene050071:CDS |
| AAGTAGCTCAATGGCGAAGA+AGG | 0.490604 | 5.4:-50483138 | MS.gene050071:CDS |
| ATGTCGCCATGAGAATGAAT+TGG | 0.497094 | 5.4:-50485989 | MS.gene050071:intron |
| ATGTACAGAGTTACTTTGCA+AGG | 0.512458 | 5.4:+50483067 | None:intergenic |
| TAGTAATGAAATACAAGGAA+AGG | 0.521881 | 5.4:-50483346 | MS.gene050071:CDS |
| ATGATACCAATTCATTCTCA+TGG | 0.531842 | 5.4:+50485983 | None:intergenic |
| TTGGCAGATGTACTATTGGT+AGG | 0.541731 | 5.4:+50483299 | None:intergenic |
| AGCGCGAAGCTTGATGTCGA+GGG | 0.547134 | 5.4:+50486437 | None:intergenic |
| CGAACTCATTGAACAATCCA+AGG | 0.552460 | 5.4:-50486346 | MS.gene050071:intron |
| TAACCTCGACAGAGCTGAAG+AGG | 0.559410 | 5.4:-50483550 | MS.gene050071:CDS |
| TGAAGCTGAAGAACGAGCCA+GGG | 0.559780 | 5.4:-50486076 | MS.gene050071:CDS |
| GTAGCTTAAAACAATCAACT+AGG | 0.561722 | 5.4:-50483635 | MS.gene050071:intron |
| GGCGATAAAGAAGTTTGTTG+AGG | 0.561954 | 5.4:-50486211 | MS.gene050071:CDS |
| AGCTGCTGTCAATGTGGAGC+GGG | 0.565123 | 5.4:-50484520 | MS.gene050071:intron |
| TTCGAAGATAAGTAGCTCAA+TGG | 0.565941 | 5.4:-50483147 | MS.gene050071:CDS |
| TGATGAAATCGTCGATTTCG+GGG | 0.567108 | 5.4:+50486505 | None:intergenic |
| GATGAAATCGTCGATTTCGG+GGG | 0.574596 | 5.4:+50486506 | None:intergenic |
| CTTGATGTCGAGGGTTTGGG+AGG | 0.585010 | 5.4:+50486446 | None:intergenic |
| GGAGAATCAGAAATTGGCGG+TGG | 0.585856 | 5.4:-50486190 | MS.gene050071:CDS |
| TATTGGAAAAGGAGAACAGA+AGG | 0.588297 | 5.4:-50483370 | MS.gene050071:CDS |
| AAGCGCGAAGCTTGATGTCG+AGG | 0.591620 | 5.4:+50486436 | None:intergenic |
| GTGTTTGCGAGCTGAGGAGT+TGG | 0.593637 | 5.4:-50486049 | MS.gene050071:CDS |
| CTTCTTCGGCAAGCACACAT+GGG | 0.598949 | 5.4:-50484646 | MS.gene050071:CDS |
| GGAGTGAAGCGTTCTGATCG+CGG | 0.601684 | 5.4:+50486391 | None:intergenic |
| CCTCGACAGAGCTGAAGAGG+AGG | 0.608059 | 5.4:-50483547 | MS.gene050071:intron |
| GCATTGTAGAAAACTGGAGA+AGG | 0.608246 | 5.4:-50486148 | MS.gene050071:CDS |
| GGAGGCGTGTTTGCGAGCTG+AGG | 0.613262 | 5.4:-50486055 | MS.gene050071:CDS |
| AAGACCTAATGAGTGGTCGA+TGG | 0.616951 | 5.4:+50486476 | None:intergenic |
| TACCAATAGTACATCTGCCA+AGG | 0.617685 | 5.4:-50483297 | MS.gene050071:intron |
| CCTCCTCTTCAGCTCTGTCG+AGG | 0.622887 | 5.4:+50483547 | None:intergenic |
| AGGAGTCATACAGAATCTGG+TGG | 0.628697 | 5.4:-50483326 | MS.gene050071:CDS |
| TGTACAGAGTTACTTTGCAA+GGG | 0.631169 | 5.4:+50483068 | None:intergenic |
| TGAGGAGAATCAGAAATTGG+CGG | 0.631685 | 5.4:-50486193 | MS.gene050071:CDS |
| AAGGGTGACAATGCTTGTCT+AGG | 0.637696 | 5.4:+50483086 | None:intergenic |
| TTCTTCGGCAAGCACACATG+GGG | 0.638857 | 5.4:-50484645 | MS.gene050071:CDS |
| GGAGTCATACAGAATCTGGT+GGG | 0.641318 | 5.4:-50483325 | MS.gene050071:CDS |
| AAGGTTAGTAATGAAATACA+AGG | 0.646189 | 5.4:-50483351 | MS.gene050071:CDS |
| GGTGGAGTGTGAGAATCTGT+TGG | 0.648638 | 5.4:-50486172 | MS.gene050071:CDS |
| TGAAGCATGTGTGAATGCGT+TGG | 0.662273 | 5.4:-50486232 | MS.gene050071:CDS |
| AGCTGAAGAACGAGCCAGGG+AGG | 0.676565 | 5.4:-50486073 | MS.gene050071:CDS |
| AGATGGGAAGACCTAATGAG+TGG | 0.676635 | 5.4:+50486469 | None:intergenic |
| ATGAAATCGTCGATTTCGGG+GGG | 0.680612 | 5.4:+50486507 | None:intergenic |
| AGGAAGATGAATCTAGACAA+TGG | 0.688192 | 5.4:+50483034 | None:intergenic |
| AAGCTGCTGTCAATGTGGAG+CGG | 0.726336 | 5.4:-50484521 | MS.gene050071:CDS |
| AAGATGAATCTAGACAATGG+TGG | 0.735233 | 5.4:+50483037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAATAAGTTGTTT+AGG | - | chr5.4:50484062-50484081 | MS.gene050071:intron | 10.0% |
| !! | TAAAAATAATAAGTTGTTTA+GGG | - | chr5.4:50484063-50484082 | MS.gene050071:intron | 10.0% |
| !!! | AAACTTTTTTCAAAAAATAA+AGG | + | chr5.4:50484257-50484276 | None:intergenic | 10.0% |
| !!! | ATATTTACTTTATTTTACTA+AGG | - | chr5.4:50484887-50484906 | MS.gene050071:intron | 10.0% |
| !! | AAAAATACAAACAAAAGATA+AGG | + | chr5.4:50484040-50484059 | None:intergenic | 15.0% |
| !! | AAAAGAATAATGTCAAAATA+AGG | + | chr5.4:50485112-50485131 | None:intergenic | 15.0% |
| !! | ATGCAGATTAATTATTTAAA+AGG | + | chr5.4:50486368-50486387 | None:intergenic | 15.0% |
| !!! | GTTTTTTCTATTATAGAAAT+AGG | + | chr5.4:50485543-50485562 | None:intergenic | 15.0% |
| !! | AATCCATATAATTCAAAAAC+TGG | + | chr5.4:50486077-50486096 | None:intergenic | 20.0% |
| !! | ATTCCATATAATTCAAAAAC+TGG | + | chr5.4:50486116-50486135 | None:intergenic | 20.0% |
| !! | CATCAGAGATAAAAAAAAAT+TGG | + | chr5.4:50485137-50485156 | None:intergenic | 20.0% |
| !! | TTGAGATATTAATTGATTAG+TGG | - | chr5.4:50483646-50483665 | MS.gene050071:intron | 20.0% |
| !!! | AGTATTTGGAATTTCATTTT+TGG | - | chr5.4:50484309-50484328 | MS.gene050071:intron | 20.0% |
| !!! | CTTTTTCTTTAAGTTTTTGA+AGG | + | chr5.4:50483195-50483214 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTGTTTTGTTTT+TGG | - | chr5.4:50483301-50483320 | MS.gene050071:CDS | 20.0% |
| !!! | TTACTCTTCTTTATTTTTCA+AGG | - | chr5.4:50483260-50483279 | MS.gene050071:intron | 20.0% |
| !!! | TTTCCAGTTTTTGAATTATA+TGG | - | chr5.4:50486071-50486090 | MS.gene050071:CDS | 20.0% |
| ! | AAAAAGTCAACAATATAAGG+AGG | + | chr5.4:50486054-50486073 | None:intergenic | 25.0% |
| ! | AAATTCCAAATACTCAATGA+TGG | + | chr5.4:50484303-50484322 | None:intergenic | 25.0% |
| ! | AAGGTTAGTAATGAAATACA+AGG | - | chr5.4:50486211-50486230 | MS.gene050071:CDS | 25.0% |
| ! | AATAATTCATTATGCCCTTT+AGG | + | chr5.4:50485604-50485623 | None:intergenic | 25.0% |
| ! | AATTAGATTAAGCAGTATGT+TGG | + | chr5.4:50484651-50484670 | None:intergenic | 25.0% |
| ! | ACAAAATCCAAATGATAATC+AGG | + | chr5.4:50485909-50485928 | None:intergenic | 25.0% |
| ! | ACTACATAAACCAATGATTA+AGG | + | chr5.4:50483768-50483787 | None:intergenic | 25.0% |
| ! | ATCTGTTGAAAATAGCATAT+TGG | - | chr5.4:50486175-50486194 | MS.gene050071:CDS | 25.0% |
| ! | ATGATGCATACAAATACAAA+AGG | + | chr5.4:50485678-50485697 | None:intergenic | 25.0% |
| ! | ATGTTAATTAAGCAGTATGT+TGG | + | chr5.4:50484628-50484647 | None:intergenic | 25.0% |
| ! | ATTGAAAGATTTACGTACTA+TGG | + | chr5.4:50485629-50485648 | None:intergenic | 25.0% |
| ! | CAAAATCCAAATGATAATCA+GGG | + | chr5.4:50485908-50485927 | None:intergenic | 25.0% |
| ! | TAACCAATGTTGTAAAATTG+TGG | - | chr5.4:50485173-50485192 | MS.gene050071:intron | 25.0% |
| ! | TAGTAATGAAATACAAGGAA+AGG | - | chr5.4:50486216-50486235 | MS.gene050071:CDS | 25.0% |
| ! | TGAAAATAGCATATTGGAAA+AGG | - | chr5.4:50486181-50486200 | MS.gene050071:CDS | 25.0% |
| ! | TGATGCATACAAATACAAAA+GGG | + | chr5.4:50485677-50485696 | None:intergenic | 25.0% |
| ! | TGGAAAAAGTCAACAATATA+AGG | + | chr5.4:50486057-50486076 | None:intergenic | 25.0% |
| ! | TGTATCTTACACAAAAGATA+AGG | + | chr5.4:50483952-50483971 | None:intergenic | 25.0% |
| ! | TTTCACTAGAGTTAATCATT+TGG | - | chr5.4:50484845-50484864 | MS.gene050071:intron | 25.0% |
| !! | GAATTTTTCCTCTTAATTGA+TGG | - | chr5.4:50484228-50484247 | MS.gene050071:intron | 25.0% |
| !! | GTCTTCTACATATGAATTTT+TGG | - | chr5.4:50484989-50485008 | MS.gene050071:intron | 25.0% |
| !! | TGTTTAGGGTTATTTCATTT+GGG | - | chr5.4:50484077-50484096 | MS.gene050071:intron | 25.0% |
| !! | TTGTTTAGGGTTATTTCATT+TGG | - | chr5.4:50484076-50484095 | MS.gene050071:intron | 25.0% |
| !! | TTTTACTTGAAAGTCATATG+AGG | - | chr5.4:50484343-50484362 | MS.gene050071:intron | 25.0% |
| !!! | TGATTTGGTTATGTATCAAT+TGG | - | chr5.4:50483540-50483559 | MS.gene050071:intron | 25.0% |
| AGAACTTATCTGTTTCATTC+AGG | + | chr5.4:50484154-50484173 | None:intergenic | 30.0% | |
| ATATCAGTAGCTAACATTCA+TGG | + | chr5.4:50484871-50484890 | None:intergenic | 30.0% | |
| ATGATACCAATTCATTCTCA+TGG | + | chr5.4:50483582-50483601 | None:intergenic | 30.0% | |
| ATTTCCCTAATAGAGAAACT+AGG | + | chr5.4:50485268-50485287 | None:intergenic | 30.0% | |
| ATTTCGAGATTAGAGAGAAA+GGG | + | chr5.4:50484812-50484831 | None:intergenic | 30.0% | |
| CAATGTCTCAAGATACTAAT+GGG | + | chr5.4:50484680-50484699 | None:intergenic | 30.0% | |
| CATACAAATACAAAAGGGAA+TGG | + | chr5.4:50485672-50485691 | None:intergenic | 30.0% | |
| CCAAATCCAAATTCAAATGA+GGG | + | chr5.4:50484544-50484563 | None:intergenic | 30.0% | |
| GAAAGATTTGAAAGAAACCT+TGG | + | chr5.4:50483236-50483255 | None:intergenic | 30.0% | |
| GAACTTATCTGTTTCATTCA+GGG | + | chr5.4:50484153-50484172 | None:intergenic | 30.0% | |
| GTAGCTTAAAACAATCAACT+AGG | - | chr5.4:50485927-50485946 | MS.gene050071:intron | 30.0% | |
| GTGTTATCAATAGCATATTG+TGG | + | chr5.4:50485832-50485851 | None:intergenic | 30.0% | |
| TAGCATATTGTGGAAAATAG+CGG | + | chr5.4:50485822-50485841 | None:intergenic | 30.0% | |
| TATTTCGAGATTAGAGAGAA+AGG | + | chr5.4:50484813-50484832 | None:intergenic | 30.0% | |
| TCAATGTCTCAAGATACTAA+TGG | + | chr5.4:50484681-50484700 | None:intergenic | 30.0% | |
| TGGACTACTACTACTATAAT+AGG | - | chr5.4:50484756-50484775 | MS.gene050071:intron | 30.0% | |
| TGTGTACATACCTTAATCAT+TGG | - | chr5.4:50483755-50483774 | MS.gene050071:intron | 30.0% | |
| TTACAACCCTGATTATCATT+TGG | - | chr5.4:50485899-50485918 | MS.gene050071:intron | 30.0% | |
| TTCTCTCTAATCTCGAAATA+TGG | - | chr5.4:50484813-50484832 | MS.gene050071:intron | 30.0% | |
| TTGTAAAATTGTGGTGATAG+CGG | - | chr5.4:50485182-50485201 | MS.gene050071:intron | 30.0% | |
| TTTCTCTATTAGGGAAATAG+CGG | - | chr5.4:50485270-50485289 | MS.gene050071:intron | 30.0% | |
| ! | ACAGATAATAATTTGCCCTA+TGG | + | chr5.4:50486161-50486180 | None:intergenic | 30.0% |
| ! | CAGATAAGTTCTGACATATT+AGG | - | chr5.4:50484162-50484181 | MS.gene050071:intron | 30.0% |
| ! | TCACCACAATTTTACAACAT+TGG | + | chr5.4:50485179-50485198 | None:intergenic | 30.0% |
| ! | TGAATTGATGTCTCTAGAAA+AGG | - | chr5.4:50485970-50485989 | MS.gene050071:intron | 30.0% |
| ! | TGGTTAATTGTCTAGAACAT+TGG | + | chr5.4:50485159-50485178 | None:intergenic | 30.0% |
| ! | TTGGTTAATTGTCTAGAACA+TGG | + | chr5.4:50485160-50485179 | None:intergenic | 30.0% |
| !! | TTTGATGAAATCGTCGATTT+CGG | + | chr5.4:50483062-50483081 | None:intergenic | 30.0% |
| !! | TTTTGATAGTACATTCACTC+AGG | - | chr5.4:50484466-50484485 | MS.gene050071:intron | 30.0% |
| !!! | TAAATCACCTAGTGGATTTT+AGG | - | chr5.4:50485792-50485811 | MS.gene050071:intron | 30.0% |
| AAACTTGACAAGAGAGTAAG+AGG | + | chr5.4:50485089-50485108 | None:intergenic | 35.0% | |
| AAAGGACACCATCAATTAAG+AGG | + | chr5.4:50484239-50484258 | None:intergenic | 35.0% | |
| AAATCCACTAGGTGATTTAG+TGG | + | chr5.4:50485791-50485810 | None:intergenic | 35.0% | |
| AAATTCTGTTACCACAGGTA+AGG | + | chr5.4:50484214-50484233 | None:intergenic | 35.0% | |
| AACTTAGCAGTACCACAATT+TGG | + | chr5.4:50484725-50484744 | None:intergenic | 35.0% | |
| ACAAATACAAAAGGGAATGG+AGG | + | chr5.4:50485669-50485688 | None:intergenic | 35.0% | |
| AGCGGAAAAATGAGAATCTT+AGG | - | chr5.4:50485465-50485484 | MS.gene050071:intron | 35.0% | |
| AGGAAAAATTCTGTTACCAC+AGG | + | chr5.4:50484219-50484238 | None:intergenic | 35.0% | |
| ATAGTAGTAGTAGTCCAAGT+TGG | + | chr5.4:50484753-50484772 | None:intergenic | 35.0% | |
| ATTAGGATTCAAACCAGACA+TGG | - | chr5.4:50484179-50484198 | MS.gene050071:intron | 35.0% | |
| CCCTCATTTGAATTTGGATT+TGG | - | chr5.4:50484541-50484560 | MS.gene050071:CDS | 35.0% | |
| GCAGTAAACATGTAACAATC+AGG | - | chr5.4:50485853-50485872 | MS.gene050071:intron | 35.0% | |
| GCCAAATCCAAATTCAAATG+AGG | + | chr5.4:50484545-50484564 | None:intergenic | 35.0% | |
| TAGTAGTAGTAGTCCAAGTT+GGG | + | chr5.4:50484752-50484771 | None:intergenic | 35.0% | |
| TATTGGAAAAGGAGAACAGA+AGG | - | chr5.4:50486192-50486211 | MS.gene050071:CDS | 35.0% | |
| TCTAATCTCGAAATATGGCT+AGG | - | chr5.4:50484818-50484837 | MS.gene050071:intron | 35.0% | |
| TGCTTACCCTCATTTGAATT+TGG | - | chr5.4:50484535-50484554 | MS.gene050071:CDS | 35.0% | |
| TGTTAGATGAAATGCATTGC+AGG | + | chr5.4:50484604-50484623 | None:intergenic | 35.0% | |
| TGTTGAGGAGAATCAGAAAT+TGG | - | chr5.4:50483366-50483385 | MS.gene050071:CDS | 35.0% | |
| TTATCTGTTTCATTCAGGGA+AGG | + | chr5.4:50484149-50484168 | None:intergenic | 35.0% | |
| TTCGAAGATAAGTAGCTCAA+TGG | - | chr5.4:50486415-50486434 | MS.gene050071:CDS | 35.0% | |
| ! | ACACCTTCAATTAGAAGTGT+TGG | + | chr5.4:50483837-50483856 | None:intergenic | 35.0% |
| ! | ATGTACAGAGTTACTTTGCA+AGG | + | chr5.4:50486498-50486517 | None:intergenic | 35.0% |
| ! | ATTTGGGATACTGTTTAGTG+AGG | - | chr5.4:50484093-50484112 | MS.gene050071:intron | 35.0% |
| ! | TACTAAGGTTGACTCTTCTT+CGG | - | chr5.4:50484902-50484921 | MS.gene050071:intron | 35.0% |
| ! | TGTACAGAGTTACTTTGCAA+GGG | + | chr5.4:50486497-50486516 | None:intergenic | 35.0% |
| ! | TTTGGGATACTGTTTAGTGA+GGG | - | chr5.4:50484094-50484113 | MS.gene050071:intron | 35.0% |
| !! | AAAAGGACAAAGAGCATCTA+AGG | - | chr5.4:50485987-50486006 | MS.gene050071:intron | 35.0% |
| !! | CAAGCTATAAAGCATTGACA+CGG | + | chr5.4:50483925-50483944 | None:intergenic | 35.0% |
| !! | TTAGCTTGGTGTAAACCATA+GGG | - | chr5.4:50486143-50486162 | MS.gene050071:CDS | 35.0% |
| !! | TTGATGAAATCGTCGATTTC+GGG | + | chr5.4:50483061-50483080 | None:intergenic | 35.0% |
| AAGGACTTGTAAACCATGTC+TGG | + | chr5.4:50484195-50484214 | None:intergenic | 40.0% | |
| AATCTCGAAATATGGCTAGG+TGG | - | chr5.4:50484821-50484840 | MS.gene050071:intron | 40.0% | |
| ACCGTCCTAGTTTCTCTATT+AGG | - | chr5.4:50485260-50485279 | MS.gene050071:intron | 40.0% | |
| ACTATGGCGCTATAATCTAG+TGG | - | chr5.4:50485206-50485225 | MS.gene050071:intron | 40.0% | |
| ATCGAGTATTACTCACCTGA+CGG | - | chr5.4:50485572-50485591 | MS.gene050071:intron | 40.0% | |
| ATGTCGCCATGAGAATGAAT+TGG | - | chr5.4:50483573-50483592 | MS.gene050071:CDS | 40.0% | |
| CCCTAATAGAGAAACTAGGA+CGG | + | chr5.4:50485264-50485283 | None:intergenic | 40.0% | |
| CCGTCCTAGTTTCTCTATTA+GGG | - | chr5.4:50485261-50485280 | MS.gene050071:intron | 40.0% | |
| CGAACTCATTGAACAATCCA+AGG | - | chr5.4:50483216-50483235 | MS.gene050071:intron | 40.0% | |
| CTATCCACTAAATCACCTAG+TGG | - | chr5.4:50485784-50485803 | MS.gene050071:intron | 40.0% | |
| CTGCCAAGGTAAGAATCATA+GGG | - | chr5.4:50486279-50486298 | MS.gene050071:intron | 40.0% | |
| GAAAGGAGTCATACAGAATC+TGG | - | chr5.4:50486233-50486252 | MS.gene050071:CDS | 40.0% | |
| GAGAAATCCAACAATAGCTC+AGG | + | chr5.4:50484375-50484394 | None:intergenic | 40.0% | |
| GCACCAACACTTCTAATTGA+AGG | - | chr5.4:50483831-50483850 | MS.gene050071:intron | 40.0% | |
| GCATTGTAGAAAACTGGAGA+AGG | - | chr5.4:50483414-50483433 | MS.gene050071:intron | 40.0% | |
| GTAAAAAGCTGCTGTCAATG+TGG | - | chr5.4:50485036-50485055 | MS.gene050071:intron | 40.0% | |
| TACCAATAGTACATCTGCCA+AGG | - | chr5.4:50486265-50486284 | MS.gene050071:intron | 40.0% | |
| TACCTTGGCAGATGTACTAT+TGG | + | chr5.4:50486270-50486289 | None:intergenic | 40.0% | |
| TCTGCCAAGGTAAGAATCAT+AGG | - | chr5.4:50486278-50486297 | MS.gene050071:intron | 40.0% | |
| TGAGCTACTTATCTTCGAAC+TGG | + | chr5.4:50486414-50486433 | None:intergenic | 40.0% | |
| TGAGGAGAATCAGAAATTGG+CGG | - | chr5.4:50483369-50483388 | MS.gene050071:CDS | 40.0% | |
| TGCCAAGGTAAGAATCATAG+GGG | - | chr5.4:50486280-50486299 | MS.gene050071:intron | 40.0% | |
| TGCTAAGTTATGACCCAACT+TGG | - | chr5.4:50484736-50484755 | MS.gene050071:intron | 40.0% | |
| TGCTACATACTGCCAAATTG+TGG | - | chr5.4:50484710-50484729 | MS.gene050071:intron | 40.0% | |
| TTGGCAGATGTACTATTGGT+AGG | + | chr5.4:50486266-50486285 | None:intergenic | 40.0% | |
| TTGGGATACTGTTTAGTGAG+GGG | - | chr5.4:50484095-50484114 | MS.gene050071:intron | 40.0% | |
| ! | ATGGAATGACTGACTTAGCT+TGG | - | chr5.4:50486129-50486148 | MS.gene050071:CDS | 40.0% |
| ! | CAAATACTCAATGATGGAGC+CGG | + | chr5.4:50484297-50484316 | None:intergenic | 40.0% |
| !! | CTTAGCTTGGTGTAAACCAT+AGG | - | chr5.4:50486142-50486161 | MS.gene050071:CDS | 40.0% |
| !! | GAGTTTGCTTGACTCTCTTT+TGG | - | chr5.4:50484944-50484963 | MS.gene050071:intron | 40.0% |
| !! | GGCGATAAAGAAGTTTGTTG+AGG | - | chr5.4:50483351-50483370 | MS.gene050071:CDS | 40.0% |
| !! | GTTGGAGCATTGTAGAAAAC+TGG | - | chr5.4:50483408-50483427 | MS.gene050071:intron | 40.0% |
| !! | TAGTGGTGTTGTGTTGCTTA+GGG | - | chr5.4:50483663-50483682 | MS.gene050071:intron | 40.0% |
| !! | TGATGAAATCGTCGATTTCG+GGG | + | chr5.4:50483060-50483079 | None:intergenic | 40.0% |
| !! | TTAGTGGTGTTGTGTTGCTT+AGG | - | chr5.4:50483662-50483681 | MS.gene050071:intron | 40.0% |
| AAGACCTAATGAGTGGTCGA+TGG | + | chr5.4:50483089-50483108 | None:intergenic | 45.0% | |
| AAGCTTGATGTCGAGGGTTT+GGG | + | chr5.4:50483122-50483141 | None:intergenic | 45.0% | |
| AAGGGTGACAATGCTTGTCT+AGG | + | chr5.4:50486479-50486498 | None:intergenic | 45.0% | |
| AAGTAGCTCAATGGCGAAGA+AGG | - | chr5.4:50486424-50486443 | MS.gene050071:CDS | 45.0% | |
| AGATGGGAAGACCTAATGAG+TGG | + | chr5.4:50483096-50483115 | None:intergenic | 45.0% | |
| AGGAGTCATACAGAATCTGG+TGG | - | chr5.4:50486236-50486255 | MS.gene050071:CDS | 45.0% | |
| CAATCCATCGACCACTCATT+AGG | - | chr5.4:50483082-50483101 | MS.gene050071:CDS | 45.0% | |
| CACCCCTATGATTCTTACCT+TGG | + | chr5.4:50486285-50486304 | None:intergenic | 45.0% | |
| CGGAATGCCTAAAATCCACT+AGG | + | chr5.4:50485802-50485821 | None:intergenic | 45.0% | |
| CGGCTCCATCATTGAGTATT+TGG | - | chr5.4:50484295-50484314 | MS.gene050071:intron | 45.0% | |
| GATACTGTTTAGTGAGGGGA+AGG | - | chr5.4:50484099-50484118 | MS.gene050071:intron | 45.0% | |
| GGAGTCATACAGAATCTGGT+GGG | - | chr5.4:50486237-50486256 | MS.gene050071:CDS | 45.0% | |
| GGTTTACAAGTCCTTACCTG+TGG | - | chr5.4:50484200-50484219 | MS.gene050071:intron | 45.0% | |
| GTTTAGTGAGGGGAAGGAAA+GGG | - | chr5.4:50484105-50484124 | MS.gene050071:intron | 45.0% | |
| TCGAGTATTACTCACCTGAC+GGG | - | chr5.4:50485573-50485592 | MS.gene050071:intron | 45.0% | |
| TGAAGCATGTGTGAATGCGT+TGG | - | chr5.4:50483330-50483349 | MS.gene050071:CDS | 45.0% | |
| TGAGGAGTTGGAACGTGATT+TGG | - | chr5.4:50483525-50483544 | MS.gene050071:intron | 45.0% | |
| TGGATAGCGTTGCAGGAAAA+TGG | + | chr5.4:50485771-50485790 | None:intergenic | 45.0% | |
| TGTTTAGTGAGGGGAAGGAA+AGG | - | chr5.4:50484104-50484123 | MS.gene050071:intron | 45.0% | |
| TGTTTCATTCAGGGAAGGCT+TGG | + | chr5.4:50484144-50484163 | None:intergenic | 45.0% | |
| ! | CTGATCGCGGAGATTTTGTT+CGG | + | chr5.4:50483161-50483180 | None:intergenic | 45.0% |
| ! | GATTTAGTGGATAGCGTTGC+AGG | + | chr5.4:50485778-50485797 | None:intergenic | 45.0% |
| !! | ATGAAATCGTCGATTTCGGG+GGG | + | chr5.4:50483058-50483077 | None:intergenic | 45.0% |
| !! | GATGAAATCGTCGATTTCGG+GGG | + | chr5.4:50483059-50483078 | None:intergenic | 45.0% |
| !! | GTGTTGTGTTGCTTAGGGAA+TGG | - | chr5.4:50483668-50483687 | MS.gene050071:intron | 45.0% |
| AAGCTGCTGTCAATGTGGAG+CGG | - | chr5.4:50485041-50485060 | MS.gene050071:intron | 50.0% | |
| ATGAAGCTGAAGAACGAGCC+AGG | - | chr5.4:50483485-50483504 | MS.gene050071:intron | 50.0% | |
| CTTCTTCGGCAAGCACACAT+GGG | - | chr5.4:50484916-50484935 | MS.gene050071:intron | 50.0% | |
| GAAGCTTGATGTCGAGGGTT+TGG | + | chr5.4:50483123-50483142 | None:intergenic | 50.0% | |
| GCGTCTTCCTGAGCTATTGT+TGG | - | chr5.4:50484365-50484384 | MS.gene050071:intron | 50.0% | |
| GGAGAATCAGAAATTGGCGG+TGG | - | chr5.4:50483372-50483391 | MS.gene050071:CDS | 50.0% | |
| GGTGGAGTGTGAGAATCTGT+TGG | - | chr5.4:50483390-50483409 | MS.gene050071:CDS | 50.0% | |
| TAACCTCGACAGAGCTGAAG+AGG | - | chr5.4:50486012-50486031 | MS.gene050071:CDS | 50.0% | |
| TCTTCTTCGGCAAGCACACA+TGG | - | chr5.4:50484915-50484934 | MS.gene050071:intron | 50.0% | |
| TGAAGCTGAAGAACGAGCCA+GGG | - | chr5.4:50483486-50483505 | MS.gene050071:intron | 50.0% | |
| TGAGGGGAAGGAAAGGGAAA+GGG | - | chr5.4:50484111-50484130 | MS.gene050071:intron | 50.0% | |
| TTCCCCAAGACTTCGAAGTC+CGG | - | chr5.4:50484275-50484294 | MS.gene050071:intron | 50.0% | |
| TTCTTCGGCAAGCACACATG+GGG | - | chr5.4:50484917-50484936 | MS.gene050071:intron | 50.0% | |
| !! | ACCTGACGGGCTATTCCTAA+AGG | - | chr5.4:50485586-50485605 | MS.gene050071:intron | 50.0% |
| !! | CCTGACGGGCTATTCCTAAA+GGG | - | chr5.4:50485587-50485606 | MS.gene050071:intron | 50.0% |
| !! | TTGTGGTGATAGCGGCACTA+TGG | - | chr5.4:50485190-50485209 | MS.gene050071:intron | 50.0% |
| AAGCGCGAAGCTTGATGTCG+AGG | + | chr5.4:50483129-50483148 | None:intergenic | 55.0% | |
| ACAGAGCTGAAGAGGAGGTG+AGG | - | chr5.4:50486020-50486039 | MS.gene050071:CDS | 55.0% | |
| AGCCGGACTTCGAAGTCTTG+GGG | + | chr5.4:50484280-50484299 | None:intergenic | 55.0% | |
| AGCGCGAAGCTTGATGTCGA+GGG | + | chr5.4:50483128-50483147 | None:intergenic | 55.0% | |
| AGCTGCTGTCAATGTGGAGC+GGG | - | chr5.4:50485042-50485061 | MS.gene050071:intron | 55.0% | |
| CTTGATGTCGAGGGTTTGGG+AGG | + | chr5.4:50483119-50483138 | None:intergenic | 55.0% | |
| GAGCCGGACTTCGAAGTCTT+GGG | + | chr5.4:50484281-50484300 | None:intergenic | 55.0% | |
| GGCTGATGTAGCGACAGTAG+CGG | - | chr5.4:50485447-50485466 | MS.gene050071:intron | 55.0% | |
| GTGAGGGGAAGGAAAGGGAA+AGG | - | chr5.4:50484110-50484129 | MS.gene050071:intron | 55.0% | |
| GTGTTTGCGAGCTGAGGAGT+TGG | - | chr5.4:50483513-50483532 | MS.gene050071:intron | 55.0% | |
| TCGAGGGTTTGGGAGGAGAT+GGG | + | chr5.4:50483112-50483131 | None:intergenic | 55.0% | |
| ! | CCCTTTAGGAATAGCCCGTC+AGG | + | chr5.4:50485590-50485609 | None:intergenic | 55.0% |
| ! | GAGAAACTAGGACGGTGTCG+TGG | + | chr5.4:50485256-50485275 | None:intergenic | 55.0% |
| ! | GGAGTGAAGCGTTCTGATCG+CGG | + | chr5.4:50483174-50483193 | None:intergenic | 55.0% |
| AGCTGAAGAACGAGCCAGGG+AGG | - | chr5.4:50483489-50483508 | MS.gene050071:intron | 60.0% | |
| CCTCCTCTTCAGCTCTGTCG+AGG | + | chr5.4:50486018-50486037 | None:intergenic | 60.0% | |
| CCTCGACAGAGCTGAAGAGG+AGG | - | chr5.4:50486015-50486034 | MS.gene050071:CDS | 60.0% | |
| CTGTCAATGTGGAGCGGGTG+AGG | - | chr5.4:50485047-50485066 | MS.gene050071:intron | 60.0% | |
| GCCAGTAGAAGCCTGAGCAG+CGG | + | chr5.4:50485430-50485449 | None:intergenic | 60.0% | |
| GGAGCCGGACTTCGAAGTCT+TGG | + | chr5.4:50484282-50484301 | None:intergenic | 60.0% | |
| GTCGAGGGTTTGGGAGGAGA+TGG | + | chr5.4:50483113-50483132 | None:intergenic | 60.0% | |
| AGCTCGCAAACACGCCTCCC+TGG | + | chr5.4:50483506-50483525 | None:intergenic | 65.0% | |
| GCCGCTGCTCAGGCTTCTAC+TGG | - | chr5.4:50485426-50485445 | MS.gene050071:intron | 65.0% | |
| GGAAATAGCGGCCGCTGCTC+AGG | - | chr5.4:50485416-50485435 | MS.gene050071:intron | 65.0% | |
| ! | GGAGGCGTGTTTGCGAGCTG+AGG | - | chr5.4:50483507-50483526 | MS.gene050071:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 50483046 | 50486538 | 50483046 | ID=MS.gene050071 |
| chr5.4 | mRNA | 50483046 | 50486538 | 50483046 | ID=MS.gene050071.t1;Parent=MS.gene050071 |
| chr5.4 | exon | 50486347 | 50486538 | 50486347 | ID=MS.gene050071.t1.exon1;Parent=MS.gene050071.t1 |
| chr5.4 | CDS | 50486347 | 50486538 | 50486347 | ID=cds.MS.gene050071.t1;Parent=MS.gene050071.t1 |
| chr5.4 | exon | 50485990 | 50486256 | 50485990 | ID=MS.gene050071.t1.exon2;Parent=MS.gene050071.t1 |
| chr5.4 | CDS | 50485990 | 50486256 | 50485990 | ID=cds.MS.gene050071.t1;Parent=MS.gene050071.t1 |
| chr5.4 | exon | 50484521 | 50484675 | 50484521 | ID=MS.gene050071.t1.exon3;Parent=MS.gene050071.t1 |
| chr5.4 | CDS | 50484521 | 50484675 | 50484521 | ID=cds.MS.gene050071.t1;Parent=MS.gene050071.t1 |
| chr5.4 | exon | 50483548 | 50483653 | 50483548 | ID=MS.gene050071.t1.exon4;Parent=MS.gene050071.t1 |
| chr5.4 | CDS | 50483548 | 50483653 | 50483548 | ID=cds.MS.gene050071.t1;Parent=MS.gene050071.t1 |
| chr5.4 | exon | 50483298 | 50483420 | 50483298 | ID=MS.gene050071.t1.exon5;Parent=MS.gene050071.t1 |
| chr5.4 | CDS | 50483298 | 50483420 | 50483298 | ID=cds.MS.gene050071.t1;Parent=MS.gene050071.t1 |
| chr5.4 | exon | 50483046 | 50483189 | 50483046 | ID=MS.gene050071.t1.exon6;Parent=MS.gene050071.t1 |
| chr5.4 | CDS | 50483046 | 50483189 | 50483046 | ID=cds.MS.gene050071.t1;Parent=MS.gene050071.t1 |
| Gene Sequence |
| Protein sequence |
