AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64186

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64186.t1 MTR_1g023660 98.529 340 4 1 1 339 1 340 0.0 699
MS.gene64186.t1 MTR_8g099780 49.713 348 127 10 2 339 3 312 8.30e-104 307
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64186.t1 AT5G42520 65.084 358 90 15 1 339 1 342 1.12e-149 425
MS.gene64186.t1 AT5G42520 63.966 358 90 15 1 339 1 338 1.89e-145 414
MS.gene64186.t1 AT5G42520 62.543 291 84 11 65 339 1 282 2.13e-116 338
MS.gene64186.t1 AT2G21240 48.830 342 115 7 5 339 8 296 6.31e-100 297
MS.gene64186.t1 AT2G21240 48.830 342 115 7 5 339 8 296 6.31e-100 297
MS.gene64186.t1 AT4G38910 45.266 338 120 7 5 339 8 283 8.17e-93 278
MS.gene64186.t1 AT4G38910 45.253 316 111 6 24 339 5 258 1.31e-86 261
MS.gene64186.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.43e-45 155
MS.gene64186.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.43e-45 155
MS.gene64186.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.43e-45 155
MS.gene64186.t1 AT2G35550 55.932 118 52 0 222 339 154 271 1.86e-45 156
MS.gene64186.t1 AT1G68120 56.075 107 47 0 233 339 163 269 1.32e-43 151
MS.gene64186.t1 AT2G01930 55.455 110 49 0 230 339 174 283 2.07e-43 151
MS.gene64186.t1 AT2G01930 55.455 110 49 0 230 339 174 283 2.07e-43 151
MS.gene64186.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148
MS.gene64186.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148
MS.gene64186.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148
MS.gene64186.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148

Find 86 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGCCCAATGGTCTTTA+AGG 0.149233 1.3:+1542969 None:intergenic
GGTAAACCATTTGCCTAATA+TGG 0.151975 1.3:-1543560 MS.gene64186:CDS
CCATTCAAGCTCTTTGTTGT+TGG 0.281988 1.3:+1543342 None:intergenic
TTGCTGTACAACCACTTTAT+CGG 0.289810 1.3:-1543122 MS.gene64186:CDS
TCTGGCCCTCTCTGAGAAAA+AGG 0.293315 1.3:-1543785 MS.gene64186:CDS
AGTAGTGAGGAAATGATAAA+TGG 0.302982 1.3:-1543316 MS.gene64186:CDS
GATTGACATAATTTGCTTCA+TGG 0.306231 1.3:+1543843 None:intergenic
CTGATGGACGATCGTGAAAA+TGG 0.307285 1.3:-1544068 MS.gene64186:CDS
CTTACTTTCCTTTGGTCGTT+TGG 0.335012 1.3:+1543444 None:intergenic
TAAGAAGAATCACCCATATT+AGG 0.336214 1.3:+1543547 None:intergenic
TTTCCCAACCTCTGAAGAAA+TGG 0.384675 1.3:+1543480 None:intergenic
GAATCAGACTTACTTTCCTT+TGG 0.398078 1.3:+1543436 None:intergenic
CCAACAACAAAGAGCTTGAA+TGG 0.401945 1.3:-1543342 MS.gene64186:CDS
GGCCAGATTTCTTTCTTGAA+TGG 0.411936 1.3:+1543801 None:intergenic
GGAACGGAATAATGCACTTA+TGG 0.418242 1.3:-1543710 MS.gene64186:CDS
CGAGAAAATGCTTTGGCCAA+TGG 0.428561 1.3:-1543655 MS.gene64186:CDS
GTATCGATTTGTACCATGTT+TGG 0.434696 1.3:+1542952 None:intergenic
TTCCCAACCTCTGAAGAAAT+GGG 0.437141 1.3:+1543481 None:intergenic
AGGTTTCCAATCAGCCTTTG+AGG 0.441798 1.3:+1543264 None:intergenic
TATACATCACCTTCCGCAAC+AGG 0.447735 1.3:-1543581 MS.gene64186:CDS
AATCACCCATATTAGGCAAA+TGG 0.448313 1.3:+1543554 None:intergenic
TTGTACCATGTTTGGCCCAA+TGG 0.454297 1.3:+1542960 None:intergenic
CAATGGTCTTTAAGGTCAAC+CGG 0.454646 1.3:+1542977 None:intergenic
TAGCAGCCTCAAAGGCTGAT+TGG 0.454649 1.3:-1543270 MS.gene64186:CDS
AATATGGGTGATTCTTCTTA+CGG 0.455899 1.3:-1543544 MS.gene64186:CDS
AGATCAATATAAATCTGCTC+AGG 0.457509 1.3:-1544033 MS.gene64186:CDS
TTCTGAGACAGTGCTACAAA+TGG 0.466001 1.3:-1543168 MS.gene64186:CDS
GTACAAGAGCATGCTGGTGC+TGG 0.473862 1.3:+1543196 None:intergenic
GCACCAGCATGCTCTTGTAC+TGG 0.474798 1.3:-1543193 MS.gene64186:CDS
TCTGAGACAGTGCTACAAAT+GGG 0.478630 1.3:-1543167 MS.gene64186:CDS
GTAAACCATTTGCCTAATAT+GGG 0.479892 1.3:-1543559 MS.gene64186:CDS
CAGTGCTACAAATGGGGTAA+TGG 0.484703 1.3:-1543160 MS.gene64186:CDS
TCAGTTTCGAGAAAATGCTT+TGG 0.485734 1.3:-1543662 MS.gene64186:CDS
AGCCATTCAAGAAAGAAATC+TGG 0.489436 1.3:-1543803 MS.gene64186:CDS
CCCCGTGAGATTTGACATCC+TGG 0.492305 1.3:+1543613 None:intergenic
TGATTGGAAACCTCAGGACT+TGG 0.494236 1.3:-1543254 MS.gene64186:CDS
GGCAAATGGTTTACCTGTTG+CGG 0.495581 1.3:+1543568 None:intergenic
TTCCAGCTGTGCCCAACAAA+AGG 0.495805 1.3:-1543090 MS.gene64186:CDS
CGGTTGACCTTAAAGACCAT+TGG 0.496111 1.3:-1542976 MS.gene64186:CDS
GAAGCAAATTATGTCAATCA+TGG 0.497300 1.3:-1543839 MS.gene64186:CDS
CTTAGCCGGCTTGCAGCTGA+AGG 0.500276 1.3:-1543016 MS.gene64186:CDS
TTGAATCATCGTATGCAACT+TGG 0.503216 1.3:+1543224 None:intergenic
GACATAATTTGCTTCATGGA+AGG 0.504898 1.3:+1543847 None:intergenic
ATATAAATCTGCTCAGGGAC+AGG 0.509112 1.3:-1544027 MS.gene64186:intron
CTTTCAATAAACTACTTAGC+CGG 0.514461 1.3:-1543030 MS.gene64186:CDS
TTGTTGGGCACAGCTGGAAG+TGG 0.517836 1.3:+1543094 None:intergenic
GGTATGTCATCATGCCCTCC+AGG 0.518820 1.3:-1543631 MS.gene64186:CDS
GGTTGACCTTAAAGACCATT+GGG 0.518863 1.3:-1542975 MS.gene64186:CDS
TTTGGTCGTTTGGCACGCCT+AGG 0.528022 1.3:+1543454 None:intergenic
CAAGCAGTTAGCAGCCTCAA+AGG 0.533010 1.3:-1543278 MS.gene64186:CDS
AGGGCATGATCTCTCACATC+CGG 0.533555 1.3:-1542996 MS.gene64186:CDS
AAAGGCTGATTGGAAACCTC+AGG 0.538629 1.3:-1543260 MS.gene64186:CDS
CAATTGCAGTATCTCGCTGC+AGG 0.542654 1.3:+1543734 None:intergenic
ACAAATGGGGTAATGGAGGT+TGG 0.545815 1.3:-1543153 MS.gene64186:CDS
ATCTAGAAAAGTCAAGAAAG+AGG 0.546447 1.3:-1543392 MS.gene64186:CDS
TCCAGGATGTCAAATCTCAC+GGG 0.552910 1.3:-1543614 MS.gene64186:CDS
CTCCAGGATGTCAAATCTCA+CGG 0.563255 1.3:-1543615 MS.gene64186:CDS
GCATGATGACATACCACCAT+TGG 0.567052 1.3:+1543639 None:intergenic
GGTCGTTTGGCACGCCTAGG+TGG 0.570239 1.3:+1543457 None:intergenic
TGGTTCAATGCCAAGTCCTG+AGG 0.592965 1.3:+1543244 None:intergenic
AGAGCATGCTGGTGCTGGCA+TGG 0.596415 1.3:+1543201 None:intergenic
CCCAACCTCTGAAGAAATGG+GGG 0.597363 1.3:+1543483 None:intergenic
GCTTGAATGGAAGAGTAGTG+AGG 0.599481 1.3:-1543329 MS.gene64186:CDS
AAAAGGCATGCTCGAGTAGG+TGG 0.599819 1.3:-1543073 MS.gene64186:CDS
CATGCCCTTCAGCTGCAAGC+CGG 0.601437 1.3:+1543011 None:intergenic
AAAGACCATTGGGCCAAACA+TGG 0.604624 1.3:-1542965 MS.gene64186:CDS
AAGTGGATATACCGATAAAG+TGG 0.604637 1.3:+1543111 None:intergenic
TCTAGAAAAGTCAAGAAAGA+GGG 0.605111 1.3:-1543391 MS.gene64186:CDS
AATGGTTTACCTGTTGCGGA+AGG 0.606017 1.3:+1543572 None:intergenic
GAGATACTGCAATTGCGGAA+CGG 0.606489 1.3:-1543726 MS.gene64186:CDS
TGCTACAAATGGGGTAATGG+AGG 0.606890 1.3:-1543157 MS.gene64186:CDS
TCCCAACCTCTGAAGAAATG+GGG 0.610433 1.3:+1543482 None:intergenic
GATCAATATAAATCTGCTCA+GGG 0.611740 1.3:-1544032 MS.gene64186:CDS
GCAGCGAGATACTGCAATTG+CGG 0.613903 1.3:-1543731 MS.gene64186:CDS
GAAAATGCTTTGGCCAATGG+TGG 0.615877 1.3:-1543652 MS.gene64186:CDS
TAGGCGTGCCAAACGACCAA+AGG 0.616901 1.3:-1543452 MS.gene64186:CDS
CAGAGGTTGGGAAACCACCT+AGG 0.616912 1.3:-1543471 MS.gene64186:CDS
AGCACTTGCAGAACGTGACA+TGG 0.620297 1.3:-1543761 MS.gene64186:CDS
TGGACGATCGTGAAAATGGA+AGG 0.626784 1.3:-1544064 MS.gene64186:CDS
TTAGCCGGCTTGCAGCTGAA+GGG 0.630246 1.3:-1543015 MS.gene64186:CDS
CTGAGACAGTGCTACAAATG+GGG 0.642920 1.3:-1543166 MS.gene64186:CDS
ACACCAGTACAAGAGCATGC+TGG 0.644328 1.3:+1543190 None:intergenic
GTGAGATTTGACATCCTGGA+GGG 0.655568 1.3:+1543617 None:intergenic
AACAAAAGGCATGCTCGAGT+AGG 0.658830 1.3:-1543076 MS.gene64186:CDS
CCAGGATGTCAAATCTCACG+GGG 0.670697 1.3:-1543613 MS.gene64186:CDS
CGTGAGATTTGACATCCTGG+AGG 0.739694 1.3:+1543616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTGACTTTTCTAGATTT+TGG + chr1.3:1543608-1543627 None:intergenic 25.0%
!!! TTAAATTTATTTCTGAGCAG+AGG + chr1.3:1543014-1543033 None:intergenic 25.0%
AATATGGGTGATTCTTCTTA+CGG - chr1.3:1543458-1543477 MS.gene64186:CDS 30.0%
AGATCAATATAAATCTGCTC+AGG - chr1.3:1542969-1542988 MS.gene64186:CDS 30.0%
AGTAGTGAGGAAATGATAAA+TGG - chr1.3:1543686-1543705 MS.gene64186:CDS 30.0%
ATCTAGAAAAGTCAAGAAAG+AGG - chr1.3:1543610-1543629 MS.gene64186:CDS 30.0%
CTTTCAATAAACTACTTAGC+CGG - chr1.3:1543972-1543991 MS.gene64186:intron 30.0%
GAAGCAAATTATGTCAATCA+TGG - chr1.3:1543163-1543182 MS.gene64186:CDS 30.0%
GATCAATATAAATCTGCTCA+GGG - chr1.3:1542970-1542989 MS.gene64186:CDS 30.0%
GTAAACCATTTGCCTAATAT+GGG - chr1.3:1543443-1543462 MS.gene64186:CDS 30.0%
TAAGAAGAATCACCCATATT+AGG + chr1.3:1543458-1543477 None:intergenic 30.0%
TCTAGAAAAGTCAAGAAAGA+GGG - chr1.3:1543611-1543630 MS.gene64186:CDS 30.0%
!! GATTGACATAATTTGCTTCA+TGG + chr1.3:1543162-1543181 None:intergenic 30.0%
!! TCTAAAAATTGCTTTTGCAG+TGG - chr1.3:1543108-1543127 MS.gene64186:CDS 30.0%
AAGTGGATATACCGATAAAG+TGG + chr1.3:1543894-1543913 None:intergenic 35.0%
AATCACCCATATTAGGCAAA+TGG + chr1.3:1543451-1543470 None:intergenic 35.0%
AGCCATTCAAGAAAGAAATC+TGG - chr1.3:1543199-1543218 MS.gene64186:CDS 35.0%
GAATCAGACTTACTTTCCTT+TGG + chr1.3:1543569-1543588 None:intergenic 35.0%
GGTAAACCATTTGCCTAATA+TGG - chr1.3:1543442-1543461 MS.gene64186:CDS 35.0%
TCAGTTTCGAGAAAATGCTT+TGG - chr1.3:1543340-1543359 MS.gene64186:CDS 35.0%
TTGAATCATCGTATGCAACT+TGG + chr1.3:1543781-1543800 None:intergenic 35.0%
TTGCTGTACAACCACTTTAT+CGG - chr1.3:1543880-1543899 MS.gene64186:intron 35.0%
! AAGCATTTTCTCGAAACTGA+AGG + chr1.3:1543340-1543359 None:intergenic 35.0%
! AGCATTTTCTCGAAACTGAA+GGG + chr1.3:1543339-1543358 None:intergenic 35.0%
!! GACATAATTTGCTTCATGGA+AGG + chr1.3:1543158-1543177 None:intergenic 35.0%
!! GTATCGATTTGTACCATGTT+TGG + chr1.3:1544053-1544072 None:intergenic 35.0%
!!! GATTTTGGAGTCTTCTTGTT+AGG + chr1.3:1543593-1543612 None:intergenic 35.0%
ATATAAATCTGCTCAGGGAC+AGG - chr1.3:1542975-1542994 MS.gene64186:CDS 40.0%
CCAACAACAAAGAGCTTGAA+TGG - chr1.3:1543660-1543679 MS.gene64186:CDS 40.0%
CTTACTTTCCTTTGGTCGTT+TGG + chr1.3:1543561-1543580 None:intergenic 40.0%
GCTGCATATAAGCCCTAAAA+GGG - chr1.3:1543064-1543083 MS.gene64186:CDS 40.0%
GGAACGGAATAATGCACTTA+TGG - chr1.3:1543292-1543311 MS.gene64186:CDS 40.0%
GGCCAGATTTCTTTCTTGAA+TGG + chr1.3:1543204-1543223 None:intergenic 40.0%
GGTTGACCTTAAAGACCATT+GGG - chr1.3:1544027-1544046 MS.gene64186:intron 40.0%
GTAGGTGGTAGAAAAATGAG+TGG - chr1.3:1543944-1543963 MS.gene64186:intron 40.0%
TGCTGCATATAAGCCCTAAA+AGG - chr1.3:1543063-1543082 MS.gene64186:CDS 40.0%
! CCATTCAAGCTCTTTGTTGT+TGG + chr1.3:1543663-1543682 None:intergenic 40.0%
! TCTGAGACAGTGCTACAAAT+GGG - chr1.3:1543835-1543854 MS.gene64186:CDS 40.0%
! TTCCCAACCTCTGAAGAAAT+GGG + chr1.3:1543524-1543543 None:intergenic 40.0%
! TTTCCCAACCTCTGAAGAAA+TGG + chr1.3:1543525-1543544 None:intergenic 40.0%
!! CAATGGTCTTTAAGGTCAAC+CGG + chr1.3:1544028-1544047 None:intergenic 40.0%
!! TTCTGAGACAGTGCTACAAA+TGG - chr1.3:1543834-1543853 MS.gene64186:CDS 40.0%
!!! AGTAGAGAAAGCACCCTTTT+AGG + chr1.3:1543080-1543099 None:intergenic 40.0%
!!! GTAGAGAAAGCACCCTTTTA+GGG + chr1.3:1543079-1543098 None:intergenic 40.0%
AAAGACCATTGGGCCAAACA+TGG - chr1.3:1544037-1544056 MS.gene64186:CDS 45.0%
AAAGGCTGATTGGAAACCTC+AGG - chr1.3:1543742-1543761 MS.gene64186:CDS 45.0%
AATGGTTTACCTGTTGCGGA+AGG + chr1.3:1543433-1543452 None:intergenic 45.0%
AGGTTTCCAATCAGCCTTTG+AGG + chr1.3:1543741-1543760 None:intergenic 45.0%
CAGTGCTACAAATGGGGTAA+TGG - chr1.3:1543842-1543861 MS.gene64186:CDS 45.0%
CGAGAAAATGCTTTGGCCAA+TGG - chr1.3:1543347-1543366 MS.gene64186:CDS 45.0%
CGGTTGACCTTAAAGACCAT+TGG - chr1.3:1544026-1544045 MS.gene64186:intron 45.0%
CTCCAGGATGTCAAATCTCA+CGG - chr1.3:1543387-1543406 MS.gene64186:CDS 45.0%
CTGAGACAGTGCTACAAATG+GGG - chr1.3:1543836-1543855 MS.gene64186:CDS 45.0%
GAAAATGCTTTGGCCAATGG+TGG - chr1.3:1543350-1543369 MS.gene64186:CDS 45.0%
GAGATACTGCAATTGCGGAA+CGG - chr1.3:1543276-1543295 MS.gene64186:CDS 45.0%
GCATGATGACATACCACCAT+TGG + chr1.3:1543366-1543385 None:intergenic 45.0%
GCTTGAATGGAAGAGTAGTG+AGG - chr1.3:1543673-1543692 MS.gene64186:CDS 45.0%
GGCAAATGGTTTACCTGTTG+CGG + chr1.3:1543437-1543456 None:intergenic 45.0%
GTGAGATTTGACATCCTGGA+GGG + chr1.3:1543388-1543407 None:intergenic 45.0%
GTTTGGCCCAATGGTCTTTA+AGG + chr1.3:1544036-1544055 None:intergenic 45.0%
TATACATCACCTTCCGCAAC+AGG - chr1.3:1543421-1543440 MS.gene64186:CDS 45.0%
TCCAGGATGTCAAATCTCAC+GGG - chr1.3:1543388-1543407 MS.gene64186:CDS 45.0%
TGATTGGAAACCTCAGGACT+TGG - chr1.3:1543748-1543767 MS.gene64186:CDS 45.0%
TGGACGATCGTGAAAATGGA+AGG - chr1.3:1542938-1542957 MS.gene64186:CDS 45.0%
TTGTACCATGTTTGGCCCAA+TGG + chr1.3:1544045-1544064 None:intergenic 45.0%
! AACAAAAGGCATGCTCGAGT+AGG - chr1.3:1543926-1543945 MS.gene64186:intron 45.0%
! ACTCGAGCATGCCTTTTGTT+GGG + chr1.3:1543926-1543945 None:intergenic 45.0%
! TACTCGAGCATGCCTTTTGT+TGG + chr1.3:1543927-1543946 None:intergenic 45.0%
! TCCCAACCTCTGAAGAAATG+GGG + chr1.3:1543523-1543542 None:intergenic 45.0%
! TGCTACAAATGGGGTAATGG+AGG - chr1.3:1543845-1543864 MS.gene64186:CDS 45.0%
! TGCTGCCTTTTTCTCAGAGA+GGG + chr1.3:1543225-1543244 None:intergenic 45.0%
!! ACAAATGGGGTAATGGAGGT+TGG - chr1.3:1543849-1543868 MS.gene64186:CDS 45.0%
AGCACTTGCAGAACGTGACA+TGG - chr1.3:1543241-1543260 MS.gene64186:CDS 50.0%
AGGGCATGATCTCTCACATC+CGG - chr1.3:1544006-1544025 MS.gene64186:intron 50.0%
CAAGCAGTTAGCAGCCTCAA+AGG - chr1.3:1543724-1543743 MS.gene64186:CDS 50.0%
CAATTGCAGTATCTCGCTGC+AGG + chr1.3:1543271-1543290 None:intergenic 50.0%
CCAGGATGTCAAATCTCACG+GGG - chr1.3:1543389-1543408 MS.gene64186:CDS 50.0%
CCCCCATTTCTTCAGAGGTT+GGG - chr1.3:1543519-1543538 MS.gene64186:CDS 50.0%
CGTGAGATTTGACATCCTGG+AGG + chr1.3:1543389-1543408 None:intergenic 50.0%
GCAGCGAGATACTGCAATTG+CGG - chr1.3:1543271-1543290 MS.gene64186:CDS 50.0%
TAGCAGCCTCAAAGGCTGAT+TGG - chr1.3:1543732-1543751 MS.gene64186:CDS 50.0%
TGGTTCAATGCCAAGTCCTG+AGG + chr1.3:1543761-1543780 None:intergenic 50.0%
TTCCAGCTGTGCCCAACAAA+AGG - chr1.3:1543912-1543931 MS.gene64186:intron 50.0%
! AAAAGGCATGCTCGAGTAGG+TGG - chr1.3:1543929-1543948 MS.gene64186:intron 50.0%
! ACACCAGTACAAGAGCATGC+TGG + chr1.3:1543815-1543834 None:intergenic 50.0%
! CCCAACCTCTGAAGAAATGG+GGG + chr1.3:1543522-1543541 None:intergenic 50.0%
! GTGCTGCCTTTTTCTCAGAG+AGG + chr1.3:1543226-1543245 None:intergenic 50.0%
! TCTGGCCCTCTCTGAGAAAA+AGG - chr1.3:1543217-1543236 MS.gene64186:CDS 50.0%
AGCAGCCCCCATTTCTTCAG+AGG - chr1.3:1543514-1543533 MS.gene64186:CDS 55.0%
CAGAGGTTGGGAAACCACCT+AGG - chr1.3:1543531-1543550 MS.gene64186:CDS 55.0%
CCCCGTGAGATTTGACATCC+TGG + chr1.3:1543392-1543411 None:intergenic 55.0%
CTGAAGAAATGGGGGCTGCT+GGG + chr1.3:1543514-1543533 None:intergenic 55.0%
GCACCAGCATGCTCTTGTAC+TGG - chr1.3:1543809-1543828 MS.gene64186:CDS 55.0%
GCCCCCATTTCTTCAGAGGT+TGG - chr1.3:1543518-1543537 MS.gene64186:CDS 55.0%
GGTATGTCATCATGCCCTCC+AGG - chr1.3:1543371-1543390 MS.gene64186:CDS 55.0%
TAGGCGTGCCAAACGACCAA+AGG - chr1.3:1543550-1543569 MS.gene64186:CDS 55.0%
TCTGAAGAAATGGGGGCTGC+TGG + chr1.3:1543515-1543534 None:intergenic 55.0%
TTGTTGGGCACAGCTGGAAG+TGG + chr1.3:1543911-1543930 None:intergenic 55.0%
TTTGGTCGTTTGGCACGCCT+AGG + chr1.3:1543551-1543570 None:intergenic 55.0%
! GTACAAGAGCATGCTGGTGC+TGG + chr1.3:1543809-1543828 None:intergenic 55.0%
! TGCCTTTTGTTGGGCACAGC+TGG + chr1.3:1543917-1543936 None:intergenic 55.0%
!! TTAGCCGGCTTGCAGCTGAA+GGG - chr1.3:1543987-1544006 MS.gene64186:intron 55.0%
AAGAAATGGGGGCTGCTGGG+AGG + chr1.3:1543511-1543530 None:intergenic 60.0%
AGAAATGGGGGCTGCTGGGA+GGG + chr1.3:1543510-1543529 None:intergenic 60.0%
CATGCCCTTCAGCTGCAAGC+CGG + chr1.3:1543994-1544013 None:intergenic 60.0%
!! AGAGCATGCTGGTGCTGGCA+TGG + chr1.3:1543804-1543823 None:intergenic 60.0%
!! CTTAGCCGGCTTGCAGCTGA+AGG - chr1.3:1543986-1544005 MS.gene64186:intron 60.0%
GGTCGTTTGGCACGCCTAGG+TGG + chr1.3:1543548-1543567 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 1542937 1544087 1542937 ID=MS.gene64186
chr1.3 mRNA 1542937 1544087 1542937 ID=MS.gene64186.t1;Parent=MS.gene64186
chr1.3 exon 1544028 1544087 1544028 ID=MS.gene64186.t1.exon1;Parent=MS.gene64186.t1
chr1.3 CDS 1544028 1544087 1544028 ID=cds.MS.gene64186.t1;Parent=MS.gene64186.t1
chr1.3 exon 1542937 1543896 1542937 ID=MS.gene64186.t1.exon2;Parent=MS.gene64186.t1
chr1.3 CDS 1542937 1543896 1542937 ID=cds.MS.gene64186.t1;Parent=MS.gene64186.t1
Gene Sequence

>MS.gene64186

ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGGTATATGAAACACGCCTCTGCTCAGAAATAAATTTAAGTTTGCATGAACATAACAGTTGTTAAAAGTGCTGCATATAAGCCCTAAAAGGGTGCTTTCTCTACTAATTTTCTTCTAAAAATTGCTTTTGCAGTGGTTAATGCAACAGCATCATCAGCATCCTTCCATGAAGCAAATTATGTCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTCTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGGAATAATGCACTTATGGAAAGAGATAATGCGATAGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGTGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCACCTTCCGCAACAGGTAAACCATTTGCCTAATATGGGTGATTCTTCTTACGGCACACGTGAATTACACACAACTGATGCCCTCCCAGCAGCCCCCATTTCTTCAGAGGTTGGGAAACCACCTAGGCGTGCCAAACGACCAAAGGAAAGTAAGTCTGATTCACCTAACAAGAAGACTCCAAAATCTAGAAAAGTCAAGAAAGAGGGTGATGATTTAAACAAGACAATGTTTGCCAACAACAAAGAGCTTGAATGGAAGAGTAGTGAGGAAATGATAAATGGAGATGATGATCTTAACAAGCAGTTAGCAGCCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGCATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTATATCCACTTCCAGCTGTGCCCAACAAAAGGCATGCTCGAGTAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTACTTAGCCGGCTTGCAGCTGAAGGGCATGATCTCTCACATCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG
Protein sequence

>MS.gene64186.t1

MDDRENGRHKADQYKSAQGQWLMQQHHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPISSEVGKPPRRAKRPKESKSDSPNKKTPKSRKVKKEGDDLNKTMFANNKELEWKSSEEMINGDDDLNKQLAASKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK