Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64334.t1 | XP_013467214.1 | 98.7 | 462 | 6 | 0 | 1 | 462 | 1 | 462 | 1.30E-253 | 885.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64334.t1 | Q56WD9 | 84.7 | 463 | 69 | 2 | 1 | 462 | 1 | 462 | 4.4e-221 | 768.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64334.t1 | A0A072VIH3 | 98.7 | 462 | 6 | 0 | 1 | 462 | 1 | 462 | 9.6e-254 | 885.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38144 | MS.gene64334 | PPI |
| MS.gene57887 | MS.gene64334 | PPI |
| MS.gene020954 | MS.gene64334 | PPI |
| MS.gene05839 | MS.gene64334 | PPI |
| MS.gene64334 | MS.gene062514 | PPI |
| MS.gene004403 | MS.gene64334 | PPI |
| MS.gene96250 | MS.gene64334 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64334.t1 | MTR_1g047210 | 98.701 | 462 | 6 | 0 | 1 | 462 | 1 | 462 | 0.0 | 931 |
| MS.gene64334.t1 | MTR_4g022430 | 77.551 | 441 | 92 | 2 | 1 | 441 | 1 | 434 | 0.0 | 695 |
| MS.gene64334.t1 | MTR_4g134090 | 34.804 | 408 | 227 | 10 | 52 | 438 | 7 | 396 | 6.16e-60 | 202 |
| MS.gene64334.t1 | MTR_4g134090 | 34.804 | 408 | 227 | 10 | 52 | 438 | 14 | 403 | 9.06e-60 | 201 |
| MS.gene64334.t1 | MTR_5g098310 | 33.952 | 377 | 226 | 7 | 52 | 414 | 16 | 383 | 2.07e-54 | 187 |
| MS.gene64334.t1 | MTR_0449s0040 | 32.070 | 343 | 210 | 7 | 52 | 380 | 16 | 349 | 6.65e-40 | 147 |
| MS.gene64334.t1 | MTR_4g134090 | 30.916 | 262 | 144 | 9 | 52 | 292 | 7 | 252 | 1.53e-20 | 92.0 |
| MS.gene64334.t1 | MTR_0837s0020 | 35.135 | 111 | 72 | 0 | 60 | 170 | 808 | 918 | 2.19e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64334.t1 | AT2G33150 | 84.665 | 463 | 69 | 2 | 1 | 462 | 1 | 462 | 0.0 | 795 |
| MS.gene64334.t1 | AT1G04710 | 81.375 | 451 | 75 | 2 | 1 | 451 | 1 | 442 | 0.0 | 744 |
| MS.gene64334.t1 | AT5G48880 | 72.026 | 454 | 119 | 3 | 1 | 450 | 1 | 450 | 0.0 | 671 |
| MS.gene64334.t1 | AT5G48880 | 72.026 | 454 | 119 | 3 | 1 | 450 | 1 | 450 | 0.0 | 671 |
| MS.gene64334.t1 | AT5G48880 | 72.026 | 454 | 119 | 3 | 1 | 450 | 1 | 450 | 0.0 | 671 |
| MS.gene64334.t1 | AT5G48880 | 76.108 | 406 | 95 | 1 | 47 | 450 | 2 | 407 | 0.0 | 647 |
| MS.gene64334.t1 | AT5G48230 | 36.483 | 381 | 211 | 9 | 52 | 414 | 7 | 374 | 1.96e-60 | 202 |
| MS.gene64334.t1 | AT5G48230 | 36.483 | 381 | 211 | 9 | 52 | 414 | 12 | 379 | 2.00e-60 | 203 |
| MS.gene64334.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.05e-58 | 199 |
| MS.gene64334.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.05e-58 | 199 |
| MS.gene64334.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.06e-58 | 198 |
| MS.gene64334.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 45 | 403 | 1.06e-58 | 198 |
| MS.gene64334.t1 | AT5G47720 | 34.865 | 370 | 215 | 9 | 84 | 438 | 52 | 410 | 1.21e-58 | 198 |
Find 117 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGGAAGGAGGCAGTTT+TGG | 0.225837 | 1.3:+28852021 | None:intergenic |
| TACCCATTCTTGGTGTATTC+AGG | 0.235250 | 1.3:-28851375 | MS.gene64334:intron |
| GCAAATACCTTGGTTGAAAC+TGG | 0.299711 | 1.3:+28851771 | None:intergenic |
| TCACAAAAGATCAATGTTAA+TGG | 0.316985 | 1.3:-28849465 | MS.gene64334:CDS |
| CTGATGTAGCTGCTGCTATA+AGG | 0.320959 | 1.3:-28852369 | MS.gene64334:CDS |
| TTCACAGGCTTCAGCATGTT+TGG | 0.320972 | 1.3:-28853035 | MS.gene64334:intron |
| ATTGTTGTCGGTTCTGTATT+GGG | 0.330737 | 1.3:-28852585 | MS.gene64334:CDS |
| GAAAAGGTTGTCCCCTTTGC+GGG | 0.341498 | 1.3:+28848726 | None:intergenic |
| GCGGCTGCTGCTACTGCTGC+TGG | 0.346344 | 1.3:-28851816 | MS.gene64334:CDS |
| CGTGGCAAGGACTGCCGATA+TGG | 0.352522 | 1.3:-28848928 | MS.gene64334:CDS |
| AATGGCAATTGGGCATCCTT+TGG | 0.353600 | 1.3:-28849436 | MS.gene64334:CDS |
| TATCACAGGACAGCTGCATT+TGG | 0.360508 | 1.3:-28852995 | MS.gene64334:CDS |
| ATCACAGGACAGCTGCATTT+GGG | 0.364031 | 1.3:-28852994 | MS.gene64334:CDS |
| GAAAATGTTGCCAATCGCTT+TGG | 0.377320 | 1.3:-28851987 | MS.gene64334:CDS |
| CAAAAGGGGCTACCCATTCT+TGG | 0.386260 | 1.3:-28851385 | MS.gene64334:CDS |
| TATTGTTGTCGGTTCTGTAT+TGG | 0.386914 | 1.3:-28852586 | MS.gene64334:CDS |
| GTTAACAGACAATGTTCATC+TGG | 0.392525 | 1.3:-28852406 | MS.gene64334:CDS |
| GCAACTGGAATTGCAGCAGC+TGG | 0.394353 | 1.3:+28849677 | None:intergenic |
| TTTAGGTATTGGTGCCGGTT+TGG | 0.402358 | 1.3:-28852248 | MS.gene64334:intron |
| CTAATTCTAGCGAGCATCCT+TGG | 0.404438 | 1.3:+28848699 | None:intergenic |
| CCTGCAGCCTTCACAGCAAC+TGG | 0.406034 | 1.3:+28849662 | None:intergenic |
| GGGCATCCTTTGGGAGCAAC+AGG | 0.407923 | 1.3:-28849426 | MS.gene64334:intron |
| ATGGCAATTGGGCATCCTTT+GGG | 0.407928 | 1.3:-28849435 | MS.gene64334:CDS |
| TTGTGAGCAGGTACTGGAAT+GGG | 0.418268 | 1.3:-28848799 | MS.gene64334:intron |
| AGAAATAAAACCTTCAAAAC+AGG | 0.419403 | 1.3:+28852743 | None:intergenic |
| GTCACCATTTCCGTTGATGA+TGG | 0.426385 | 1.3:-28851642 | MS.gene64334:CDS |
| GTCGGTTCTGTATTGGGAGC+TGG | 0.433413 | 1.3:-28852579 | MS.gene64334:CDS |
| CCAATCGCTTTGGAGTTTCA+AGG | 0.435048 | 1.3:-28851977 | MS.gene64334:CDS |
| AATGGAGGTGCAATGGCAAT+TGG | 0.436198 | 1.3:-28849447 | MS.gene64334:CDS |
| AATTCCATCATCAACGGAAA+TGG | 0.437634 | 1.3:+28851638 | None:intergenic |
| CCTTGAAACTCCAAAGCGAT+TGG | 0.443317 | 1.3:+28851977 | None:intergenic |
| CCAGTTGCTGTGAAGGCTGC+AGG | 0.443727 | 1.3:-28849662 | MS.gene64334:CDS |
| AAGAAGTATCGCAATGCAAA+AGG | 0.444639 | 1.3:-28851401 | MS.gene64334:CDS |
| TGGTGTTGATCCTGCCATCA+TGG | 0.449169 | 1.3:-28849708 | MS.gene64334:CDS |
| TGATGTAGCTGCTGCTATAA+GGG | 0.452992 | 1.3:-28852368 | MS.gene64334:CDS |
| CAAAACTGCCTCCTTCCAAT+GGG | 0.459453 | 1.3:-28852020 | MS.gene64334:CDS |
| AGCTTTGCAATGCCCGCAAA+GGG | 0.463134 | 1.3:-28848738 | MS.gene64334:CDS |
| ACACAGCTTTAAGCTTTCCT+AGG | 0.466091 | 1.3:+28851592 | None:intergenic |
| CACTCACCCTGATGATATCC+TGG | 0.468253 | 1.3:-28852768 | MS.gene64334:CDS |
| ACAGGAGCCAGGATATCATC+AGG | 0.471003 | 1.3:+28852761 | None:intergenic |
| ATCCAGAGACTGTGCCGGTT+AGG | 0.477289 | 1.3:-28852432 | MS.gene64334:intron |
| TGCCATTGGATTAGTTGTCA+TGG | 0.478121 | 1.3:+28852222 | None:intergenic |
| AACTTGAACCCAAGTGAAGT+TGG | 0.479113 | 1.3:-28852612 | MS.gene64334:CDS |
| TGCAATTCCAGTTGCTGTGA+AGG | 0.480592 | 1.3:-28849669 | MS.gene64334:CDS |
| ACAATATCTCCAACTTCACT+TGG | 0.482345 | 1.3:+28852603 | None:intergenic |
| ATGGAGGTGCAATGGCAATT+GGG | 0.483934 | 1.3:-28849446 | MS.gene64334:CDS |
| AGTTGTCATGGATTCCAAAC+CGG | 0.484869 | 1.3:+28852234 | None:intergenic |
| TAGGTCAGCTAATGATGCAT+TGG | 0.487397 | 1.3:+28851611 | None:intergenic |
| CAGGCTTCAGCATGTTTGGC+GGG | 0.489612 | 1.3:-28853031 | MS.gene64334:CDS |
| TGTCTGTTAACTGTCCTAAC+CGG | 0.490107 | 1.3:+28852418 | None:intergenic |
| AGATGTGGAAGATGAATCAT+TGG | 0.491739 | 1.3:+28853790 | None:intergenic |
| GAAGTTGGAGATATTGTTGT+CGG | 0.492011 | 1.3:-28852597 | MS.gene64334:CDS |
| CCAAAACTGCCTCCTTCCAA+TGG | 0.495559 | 1.3:-28852021 | MS.gene64334:CDS |
| ACTGATCCATCCCATGCCAT+TGG | 0.498873 | 1.3:+28852208 | None:intergenic |
| GGGCCAACACCCATGATGGC+AGG | 0.504707 | 1.3:+28849698 | None:intergenic |
| GTACCTGAATACACCAAGAA+TGG | 0.508482 | 1.3:+28851372 | None:intergenic |
| AGAAGTATCGCAATGCAAAA+GGG | 0.509441 | 1.3:-28851400 | MS.gene64334:CDS |
| GTAGCTGCTGCTATAAGGGC+TGG | 0.512492 | 1.3:-28852364 | MS.gene64334:CDS |
| AGGTCAGCTAATGATGCATT+GGG | 0.514870 | 1.3:+28851612 | None:intergenic |
| ACATGGATATTACTCCATAT+CGG | 0.516143 | 1.3:+28848914 | None:intergenic |
| ACAGGCTTCAGCATGTTTGG+CGG | 0.517549 | 1.3:-28853032 | MS.gene64334:intron |
| TACCTGAATACACCAAGAAT+GGG | 0.522492 | 1.3:+28851373 | None:intergenic |
| TGTAGGAGTTTCGTCGCAGT+TGG | 0.529855 | 1.3:-28849728 | MS.gene64334:intron |
| GATCCTGCCATCATGGGTGT+TGG | 0.532689 | 1.3:-28849701 | MS.gene64334:CDS |
| AATCAAGTCCTAGCTTGTTA+CGG | 0.534024 | 1.3:+28849487 | None:intergenic |
| AACTTCACTTGGGTTCAAGT+TGG | 0.534134 | 1.3:+28852614 | None:intergenic |
| GAGCATCCTTGGATAAGAAA+AGG | 0.536509 | 1.3:+28848710 | None:intergenic |
| AGCTGGGCCAACACCCATGA+TGG | 0.538149 | 1.3:+28849694 | None:intergenic |
| CAACTGGAATTGCAGCAGCT+GGG | 0.538167 | 1.3:+28849678 | None:intergenic |
| TGAAATGAAGCGACGTGGCA+AGG | 0.538544 | 1.3:-28848941 | MS.gene64334:CDS |
| CAGAGGTAATCCCCATTGGA+AGG | 0.540583 | 1.3:+28852009 | None:intergenic |
| AGAAAAGGTTGTCCCCTTTG+CGG | 0.541326 | 1.3:+28848725 | None:intergenic |
| AAACCTTCAAAACAGGAGCC+AGG | 0.542608 | 1.3:+28852750 | None:intergenic |
| AAAGACGGAACCACCACTGC+TGG | 0.543818 | 1.3:-28851564 | MS.gene64334:intron |
| GGTGTTGATCCTGCCATCAT+GGG | 0.545097 | 1.3:-28849707 | MS.gene64334:CDS |
| GTATATTGCCGTAACAAGCT+AGG | 0.554751 | 1.3:-28849495 | MS.gene64334:CDS |
| CTCCAGCACCATCACTCACC+TGG | 0.557295 | 1.3:+28851440 | None:intergenic |
| GTTGATAGGTTGAGTCTCAC+AGG | 0.558743 | 1.3:-28851842 | MS.gene64334:intron |
| TGATCTTATACCAGCAGTGG+TGG | 0.567622 | 1.3:+28851554 | None:intergenic |
| AGCCAGGTGAGTGATGGTGC+TGG | 0.568071 | 1.3:-28851442 | MS.gene64334:CDS |
| GACAACTAATCCAATGGCAT+GGG | 0.568175 | 1.3:-28852218 | MS.gene64334:CDS |
| ATTGTGAGCAGGTACTGGAA+TGG | 0.569253 | 1.3:-28848800 | MS.gene64334:intron |
| TGACAACTAATCCAATGGCA+TGG | 0.569744 | 1.3:-28852219 | MS.gene64334:CDS |
| TTATGATCTTATACCAGCAG+TGG | 0.573440 | 1.3:+28851551 | None:intergenic |
| GAGCTTTGCAATGCCCGCAA+AGG | 0.573513 | 1.3:-28848739 | MS.gene64334:CDS |
| CAATGTTAATGGAGGTGCAA+TGG | 0.575127 | 1.3:-28849454 | MS.gene64334:CDS |
| TATGTGTTTGCAGTGCATAT+CGG | 0.578334 | 1.3:-28852829 | MS.gene64334:intron |
| GAAACAAACATCGAGAGATG+TGG | 0.581606 | 1.3:+28853775 | None:intergenic |
| AAGAGCTAGTGAATGTCGTA+TGG | 0.581957 | 1.3:-28852550 | MS.gene64334:CDS |
| ATCCATGACAACTAATCCAA+TGG | 0.583716 | 1.3:-28852224 | MS.gene64334:CDS |
| GAGACAGTGCTGCTTATCAC+AGG | 0.584230 | 1.3:-28853009 | MS.gene64334:CDS |
| TGTGAGCAGGTACTGGAATG+GGG | 0.588396 | 1.3:-28848798 | MS.gene64334:intron |
| TCACAGGACAGCTGCATTTG+GGG | 0.588788 | 1.3:-28852993 | MS.gene64334:CDS |
| GGAGTAATATCCATGTGCAT+TGG | 0.596790 | 1.3:-28848907 | MS.gene64334:intron |
| TATATACCTGTTGCTCCCAA+AGG | 0.599601 | 1.3:+28849420 | None:intergenic |
| AATTCTAGCCAGGTGAGTGA+TGG | 0.600677 | 1.3:-28851448 | MS.gene64334:CDS |
| CAAAAGATCAATGTTAATGG+AGG | 0.602551 | 1.3:-28849462 | MS.gene64334:CDS |
| CAATATCTCCAACTTCACTT+GGG | 0.604564 | 1.3:+28852604 | None:intergenic |
| ACTAATCCAATGGCATGGGA+TGG | 0.605555 | 1.3:-28852214 | MS.gene64334:CDS |
| GAAGTATCGCAATGCAAAAG+GGG | 0.615830 | 1.3:-28851399 | MS.gene64334:CDS |
| AAAGCTGTGTTCAAGAAAGA+CGG | 0.620023 | 1.3:-28851579 | MS.gene64334:CDS |
| CTTTGCAAAGCTAAACGTGG+TGG | 0.621994 | 1.3:-28852800 | MS.gene64334:CDS |
| GGGTCGAATTCCATCATCAA+CGG | 0.625070 | 1.3:+28851632 | None:intergenic |
| AGCTGCATTTGGGGACGATG+TGG | 0.625487 | 1.3:-28852984 | MS.gene64334:CDS |
| TTTCCATCCAGAGACTGTGC+CGG | 0.626929 | 1.3:-28852437 | MS.gene64334:intron |
| TTAACAGACAATGTTCATCT+GGG | 0.630670 | 1.3:-28852405 | MS.gene64334:CDS |
| GTGAGCAGGTACTGGAATGG+GGG | 0.647925 | 1.3:-28848797 | MS.gene64334:intron |
| AATCATTCCAGTTTCAACCA+AGG | 0.649167 | 1.3:-28851778 | MS.gene64334:intron |
| AGTGAGTGTACCAATGCACA+TGG | 0.653800 | 1.3:+28848897 | None:intergenic |
| AGGTAATCCCCATTGGAAGG+AGG | 0.656135 | 1.3:+28852012 | None:intergenic |
| CAGGAGCCAGGATATCATCA+GGG | 0.656738 | 1.3:+28852762 | None:intergenic |
| GGTTGAGTCTCACAGGCGAG+CGG | 0.670559 | 1.3:-28851835 | MS.gene64334:CDS |
| AAAACTGCCTCCTTCCAATG+GGG | 0.685024 | 1.3:-28852019 | MS.gene64334:CDS |
| AATGCATCATTAGCTGACCT+AGG | 0.687871 | 1.3:-28851609 | MS.gene64334:CDS |
| GCTTTGCAATGCCCGCAAAG+GGG | 0.689691 | 1.3:-28848737 | MS.gene64334:CDS |
| TTGCATGAAATGAAGCGACG+TGG | 0.723164 | 1.3:-28848946 | MS.gene64334:CDS |
| GCTCTTTGCAAAGCTAAACG+TGG | 0.726080 | 1.3:-28852803 | MS.gene64334:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACAATATTAACTATA+TGG | + | chr1.3:28853735-28853754 | None:intergenic | 10.0% |
| !! | ATTAAATGAAATAATTAATC+TGG | + | chr1.3:28850422-28850441 | None:intergenic | 10.0% |
| !! | ATTAATTACAGAATATAATA+GGG | - | chr1.3:28852034-28852053 | MS.gene64334:CDS | 10.0% |
| !! | TATTAATTACAGAATATAAT+AGG | - | chr1.3:28852033-28852052 | MS.gene64334:CDS | 10.0% |
| !!! | ATTTCAATTTGTTTTATTTT+TGG | - | chr1.3:28853560-28853579 | MS.gene64334:intron | 10.0% |
| !!! | ATTTTAAAATAATAATACAG+GGG | + | chr1.3:28852010-28852029 | None:intergenic | 10.0% |
| !!! | CATTTTAAAATAATAATACA+GGG | + | chr1.3:28852011-28852030 | None:intergenic | 10.0% |
| !!! | TCATTTAATTTTTTCAATTT+TGG | - | chr1.3:28850433-28850452 | MS.gene64334:intron | 10.0% |
| !!! | TCATTTTAAAATAATAATAC+AGG | + | chr1.3:28852012-28852031 | None:intergenic | 10.0% |
| !!! | TTTCAATTTGTTTTATTTTT+GGG | - | chr1.3:28853561-28853580 | MS.gene64334:intron | 10.0% |
| !! | AAATAAAATTGGTACTTATA+TGG | + | chr1.3:28851533-28851552 | None:intergenic | 15.0% |
| !! | AATGATTTGAATATATATTC+AGG | - | chr1.3:28853024-28853043 | MS.gene64334:CDS | 15.0% |
| !! | GAATATAGTTTAATATTTGT+TGG | - | chr1.3:28849321-28849340 | MS.gene64334:intron | 15.0% |
| !! | TAATAATTAGAATGAATTTG+AGG | + | chr1.3:28851049-28851068 | None:intergenic | 15.0% |
| !!! | TTCTATAAAAGTATATGAAT+TGG | - | chr1.3:28849289-28849308 | MS.gene64334:intron | 15.0% |
| !! | AAGTATATTTCATATTCATG+TGG | - | chr1.3:28849004-28849023 | MS.gene64334:intron | 20.0% |
| !! | ACAATTATATAATGCACTTT+GGG | + | chr1.3:28851635-28851654 | None:intergenic | 20.0% |
| !! | ACTAAGTAACAAATAATAAC+TGG | - | chr1.3:28853519-28853538 | MS.gene64334:intron | 20.0% |
| !! | CCTAAACAAAAAATAGTTAA+AGG | + | chr1.3:28850297-28850316 | None:intergenic | 20.0% |
| !! | GAAAAATACATGAACATATT+AGG | + | chr1.3:28853424-28853443 | None:intergenic | 20.0% |
| !! | GTTAAAGGTAAAACAATATA+CGG | + | chr1.3:28850282-28850301 | None:intergenic | 20.0% |
| !! | TATGGAAAAAAAGAATATGA+AGG | + | chr1.3:28852199-28852218 | None:intergenic | 20.0% |
| !! | TATTTGTGGATAATTTAGAA+AGG | - | chr1.3:28851763-28851782 | MS.gene64334:intron | 20.0% |
| !! | TCTTAAAATAATACCTCTAA+CGG | - | chr1.3:28850458-28850477 | MS.gene64334:intron | 20.0% |
| !! | TGTGTTTATGTATGTATATA+TGG | - | chr1.3:28849401-28849420 | MS.gene64334:intron | 20.0% |
| !!! | ACTATTTTTTGTTTAGGTAT+TGG | - | chr1.3:28850300-28850319 | MS.gene64334:intron | 20.0% |
| !!! | CAATGAGATGATTTTTAAAT+TGG | + | chr1.3:28852753-28852772 | None:intergenic | 20.0% |
| !!! | CATATATAATTTGAGTTTTG+AGG | - | chr1.3:28849171-28849190 | MS.gene64334:intron | 20.0% |
| !!! | CCTTTAACTATTTTTTGTTT+AGG | - | chr1.3:28850294-28850313 | MS.gene64334:intron | 20.0% |
| !!! | TATGATTTCCTTTATTTTTG+TGG | + | chr1.3:28849155-28849174 | None:intergenic | 20.0% |
| !!! | TATTAGGTTATTTTAGCTAT+AGG | + | chr1.3:28853408-28853427 | None:intergenic | 20.0% |
| !!! | TATTTGATTTGATGAAAATG+TGG | + | chr1.3:28852569-28852588 | None:intergenic | 20.0% |
| !!! | TGATCTTTTTGAAATAAATG+AGG | - | chr1.3:28852938-28852957 | MS.gene64334:intron | 20.0% |
| !!! | TTATCCTTATCTTTTTGAAT+TGG | - | chr1.3:28849207-28849226 | MS.gene64334:intron | 20.0% |
| !!! | TTTATTAACCGATTTCAAAT+TGG | - | chr1.3:28851247-28851266 | MS.gene64334:intron | 20.0% |
| !!! | TTTTTAGATAATTAGACACA+AGG | + | chr1.3:28852305-28852324 | None:intergenic | 20.0% |
| ! | AAACACACATAAAATCCAAA+AGG | + | chr1.3:28848895-28848914 | None:intergenic | 25.0% |
| ! | AAATGGAGAGAAAAGAAAAT+AGG | + | chr1.3:28852679-28852698 | None:intergenic | 25.0% |
| ! | AACACACATAAAATCCAAAA+GGG | + | chr1.3:28848894-28848913 | None:intergenic | 25.0% |
| ! | AAGTGCATTATATAATTGTG+TGG | - | chr1.3:28851636-28851655 | MS.gene64334:CDS | 25.0% |
| ! | AATATAATAGGGCTATTGAA+TGG | - | chr1.3:28852045-28852064 | MS.gene64334:intron | 25.0% |
| ! | AATTCAATATACCCTTATAG+TGG | + | chr1.3:28850820-28850839 | None:intergenic | 25.0% |
| ! | AGAAATAAAACCTTCAAAAC+AGG | + | chr1.3:28849819-28849838 | None:intergenic | 25.0% |
| ! | AGAGCAGTAAGAAATAAAAT+TGG | + | chr1.3:28851544-28851563 | None:intergenic | 25.0% |
| ! | AGTAATGGTAGGAAATAAAA+TGG | + | chr1.3:28852696-28852715 | None:intergenic | 25.0% |
| ! | CACAATTATATAATGCACTT+TGG | + | chr1.3:28851636-28851655 | None:intergenic | 25.0% |
| ! | CACTGTATGTCTTATAAATA+AGG | - | chr1.3:28851272-28851291 | MS.gene64334:intron | 25.0% |
| ! | CGTAGAAAATATCATATTTG+TGG | - | chr1.3:28851749-28851768 | MS.gene64334:intron | 25.0% |
| ! | CTATTGATATTTCATCTTCT+TGG | - | chr1.3:28852476-28852495 | MS.gene64334:intron | 25.0% |
| ! | CTTAAAATAATACCTCTAAC+GGG | - | chr1.3:28850459-28850478 | MS.gene64334:intron | 25.0% |
| ! | GAAAAAAGGAACATAACATA+AGG | + | chr1.3:28852978-28852997 | None:intergenic | 25.0% |
| ! | TAGATATAGGAAAGTTAATC+TGG | + | chr1.3:28851466-28851485 | None:intergenic | 25.0% |
| ! | TATCACATTAACACTTTGTT+TGG | + | chr1.3:28852236-28852255 | None:intergenic | 25.0% |
| ! | TCACAAAAGATCAATGTTAA+TGG | - | chr1.3:28853094-28853113 | MS.gene64334:intron | 25.0% |
| ! | TGAAATAATTAATCTGGCAA+AGG | + | chr1.3:28850416-28850435 | None:intergenic | 25.0% |
| ! | TGGTAACTTTCAAAACAAAA+AGG | + | chr1.3:28853255-28853274 | None:intergenic | 25.0% |
| ! | TTATATCATGTTAAAGAGCA+GGG | + | chr1.3:28851314-28851333 | None:intergenic | 25.0% |
| ! | TTGAAATGCATATATGTATG+TGG | + | chr1.3:28853547-28853566 | None:intergenic | 25.0% |
| ! | TTGCTGATAATATTGTTGAT+AGG | - | chr1.3:28850703-28850722 | MS.gene64334:intron | 25.0% |
| ! | TTTATATCATGTTAAAGAGC+AGG | + | chr1.3:28851315-28851334 | None:intergenic | 25.0% |
| ! | TTTGACAAATATCAAATCAG+TGG | - | chr1.3:28851377-28851396 | MS.gene64334:CDS | 25.0% |
| ! | TTTGTTTGGTATACTTGAAA+AGG | + | chr1.3:28852222-28852241 | None:intergenic | 25.0% |
| !! | AACTTGAATTGATTCAACAT+AGG | + | chr1.3:28851496-28851515 | None:intergenic | 25.0% |
| !! | GTATATTGAATTTTCCTTTC+AGG | - | chr1.3:28850828-28850847 | MS.gene64334:intron | 25.0% |
| !! | TTACATATTGTTTGGAACTT+TGG | + | chr1.3:28852650-28852669 | None:intergenic | 25.0% |
| !! | TTATTTGTTGGTTGTAATGT+AGG | - | chr1.3:28852814-28852833 | MS.gene64334:CDS | 25.0% |
| !! | TTGTTGGAATATGAATTTTC+AGG | - | chr1.3:28849337-28849356 | MS.gene64334:intron | 25.0% |
| !! | TTTCTTCATCTTTTTCTGTT+TGG | - | chr1.3:28848807-28848826 | MS.gene64334:intron | 25.0% |
| !!! | GCTTTGAATTAAACTTGTTA+TGG | - | chr1.3:28849470-28849489 | MS.gene64334:CDS | 25.0% |
| !!! | TATTTTTACTTTGTTGTGAC+AGG | - | chr1.3:28850496-28850515 | MS.gene64334:intron | 25.0% |
| !!! | TTGAATTAAACTTGTTATGG+TGG | - | chr1.3:28849473-28849492 | MS.gene64334:CDS | 25.0% |
| !!! | TTGTTTTATTTTTGGGATGT+AGG | - | chr1.3:28853568-28853587 | MS.gene64334:intron | 25.0% |
| AACAAAACTGTAATGTGCTT+TGG | - | chr1.3:28853445-28853464 | MS.gene64334:intron | 30.0% | |
| AAGATTCAACAACAAGTGTT+TGG | + | chr1.3:28852727-28852746 | None:intergenic | 30.0% | |
| ACAAATTATCTAGACATACC+AGG | + | chr1.3:28850055-28850074 | None:intergenic | 30.0% | |
| ACATATTCAAACCAAAGCAA+AGG | + | chr1.3:28849384-28849403 | None:intergenic | 30.0% | |
| ACATGGATATTACTCCATAT+CGG | + | chr1.3:28853648-28853667 | None:intergenic | 30.0% | |
| AGTATCAAATGCCACAATAA+AGG | + | chr1.3:28851697-28851716 | None:intergenic | 30.0% | |
| ATCTGACGAACATTATTTGT+TGG | - | chr1.3:28852802-28852821 | MS.gene64334:CDS | 30.0% | |
| ATTTGCCAATTTCCACTATA+AGG | - | chr1.3:28850805-28850824 | MS.gene64334:intron | 30.0% | |
| CAAAAGATCAATGTTAATGG+AGG | - | chr1.3:28853097-28853116 | MS.gene64334:intron | 30.0% | |
| CAAATCAAATAAGCAATGAG+AGG | - | chr1.3:28852578-28852597 | MS.gene64334:CDS | 30.0% | |
| CAATATATCGTTTCGATTCT+CGG | - | chr1.3:28849066-28849085 | MS.gene64334:intron | 30.0% | |
| CATAGGAAGGAAATAGATAT+AGG | + | chr1.3:28851479-28851498 | None:intergenic | 30.0% | |
| CATATTCAAACCAAAGCAAA+GGG | + | chr1.3:28849383-28849402 | None:intergenic | 30.0% | |
| CTTAAGGAAGACAAAAACTT+CGG | + | chr1.3:28852401-28852420 | None:intergenic | 30.0% | |
| GAAAAACGGAAAATTACTCT+AGG | + | chr1.3:28850381-28850400 | None:intergenic | 30.0% | |
| GACTTCTATTCAATAGATTG+TGG | - | chr1.3:28850868-28850887 | MS.gene64334:intron | 30.0% | |
| GGAGATAAAGTTAGGAAAAA+CGG | + | chr1.3:28850395-28850414 | None:intergenic | 30.0% | |
| GGTACCAATTCAAAAAGATA+AGG | + | chr1.3:28849214-28849233 | None:intergenic | 30.0% | |
| GTATCAAATGCCACAATAAA+GGG | + | chr1.3:28851696-28851715 | None:intergenic | 30.0% | |
| GTTTATTGTAAATTGTGAGC+AGG | - | chr1.3:28853748-28853767 | MS.gene64334:intron | 30.0% | |
| TATCAAATGCCACAATAAAG+GGG | + | chr1.3:28851695-28851714 | None:intergenic | 30.0% | |
| TCAAATGTCGAAACTATGTT+TGG | - | chr1.3:28851802-28851821 | MS.gene64334:CDS | 30.0% | |
| TCATTGGATGAAAAAGAAGA+AGG | + | chr1.3:28848756-28848775 | None:intergenic | 30.0% | |
| TCGGTTAATAAATATCGTCA+CGG | + | chr1.3:28851239-28851258 | None:intergenic | 30.0% | |
| TTAACAGACAATGTTCATCT+GGG | - | chr1.3:28850154-28850173 | MS.gene64334:intron | 30.0% | |
| TTATAGAACCAACACAAATC+AGG | + | chr1.3:28849277-28849296 | None:intergenic | 30.0% | |
| TTATATAATGCACTTTGGGT+TGG | + | chr1.3:28851631-28851650 | None:intergenic | 30.0% | |
| TTGGTATACTTGAAAAGGTA+TGG | + | chr1.3:28852217-28852236 | None:intergenic | 30.0% | |
| TTTGCCAATTTCCACTATAA+GGG | - | chr1.3:28850806-28850825 | MS.gene64334:intron | 30.0% | |
| ! | AAGTTTTTGTCTTCCTTAAG+TGG | - | chr1.3:28852401-28852420 | MS.gene64334:CDS | 30.0% |
| ! | GGATTTTATGACATTGGTAA+AGG | - | chr1.3:28850216-28850235 | MS.gene64334:intron | 30.0% |
| ! | TACTTTTCGGTTGTTACAAA+TGG | - | chr1.3:28852147-28852166 | MS.gene64334:intron | 30.0% |
| ! | TATACCCTTATAGTGGAAAT+TGG | + | chr1.3:28850813-28850832 | None:intergenic | 30.0% |
| ! | TATATAATGCACTTTGGGTT+GGG | + | chr1.3:28851630-28851649 | None:intergenic | 30.0% |
| ! | TGAATTGATTCAACATAGGA+AGG | + | chr1.3:28851492-28851511 | None:intergenic | 30.0% |
| ! | TGATTTGATGTCTGTGTTTT+AGG | - | chr1.3:28851087-28851106 | MS.gene64334:intron | 30.0% |
| !! | AAATACAAGTTGTTGACTTG+TGG | + | chr1.3:28853165-28853184 | None:intergenic | 30.0% |
| !! | ATGTGATGTCTTTTTCACTT+CGG | + | chr1.3:28852525-28852544 | None:intergenic | 30.0% |
| !! | GAATATGAATTTTCAGGAGA+GGG | - | chr1.3:28849343-28849362 | MS.gene64334:intron | 30.0% |
| !! | GAATTTTCCTTTCAGGTATT+AGG | - | chr1.3:28850835-28850854 | MS.gene64334:intron | 30.0% |
| !! | GGTGGATTTTACATATTGTT+TGG | + | chr1.3:28852658-28852677 | None:intergenic | 30.0% |
| !! | GTTTTGATCTTGAATCTGTT+TGG | - | chr1.3:28848955-28848974 | MS.gene64334:CDS | 30.0% |
| !! | TGTGTTTCTGTTTTCTTGAT+TGG | - | chr1.3:28848908-28848927 | MS.gene64334:CDS | 30.0% |
| !! | TGTTGGTTCCACAAAAATAA+AGG | - | chr1.3:28849144-28849163 | MS.gene64334:intron | 30.0% |
| !!! | TTCTTGATTGGTTTTTAGCT+TGG | - | chr1.3:28848920-28848939 | MS.gene64334:CDS | 30.0% |
| AAAGCTGTGTTCAAGAAAGA+CGG | - | chr1.3:28850980-28850999 | MS.gene64334:intron | 35.0% | |
| AACGTGAACTAAAGCAGTAA+AGG | + | chr1.3:28849853-28849872 | None:intergenic | 35.0% | |
| AATCATTCCAGTTTCAACCA+AGG | - | chr1.3:28850781-28850800 | MS.gene64334:intron | 35.0% | |
| AATTCCATCATCAACGGAAA+TGG | + | chr1.3:28850924-28850943 | None:intergenic | 35.0% | |
| ACAATATCTCCAACTTCACT+TGG | + | chr1.3:28849959-28849978 | None:intergenic | 35.0% | |
| ACCACAATCAAAAGAATGCA+AGG | + | chr1.3:28851725-28851744 | None:intergenic | 35.0% | |
| AGATGTGGAAGATGAATCAT+TGG | + | chr1.3:28848772-28848791 | None:intergenic | 35.0% | |
| ATCAGAACCTAATACCTGAA+AGG | + | chr1.3:28850845-28850864 | None:intergenic | 35.0% | |
| ATCCATGACAACTAATCCAA+TGG | - | chr1.3:28850335-28850354 | MS.gene64334:intron | 35.0% | |
| CAATATCTCCAACTTCACTT+GGG | + | chr1.3:28849958-28849977 | None:intergenic | 35.0% | |
| CATCATCACGTTCATGTAAA+TGG | + | chr1.3:28849895-28849914 | None:intergenic | 35.0% | |
| CATCTCATTGCAGAATTGTA+TGG | - | chr1.3:28852763-28852782 | MS.gene64334:CDS | 35.0% | |
| CCACAATCAAAAGAATGCAA+GGG | + | chr1.3:28851724-28851743 | None:intergenic | 35.0% | |
| GAAGTTGGAGATATTGTTGT+CGG | - | chr1.3:28849962-28849981 | MS.gene64334:intron | 35.0% | |
| GATGAGTAAAAGTGAAAGAG+TGG | + | chr1.3:28852457-28852476 | None:intergenic | 35.0% | |
| GATGCAAGTATTTATCTTCG+AGG | - | chr1.3:28851574-28851593 | MS.gene64334:CDS | 35.0% | |
| GGTGTATTCAGGTACTTAAT+TGG | - | chr1.3:28851195-28851214 | MS.gene64334:intron | 35.0% | |
| GTTAACAGACAATGTTCATC+TGG | - | chr1.3:28850153-28850172 | MS.gene64334:intron | 35.0% | |
| TACCTGAATACACCAAGAAT+GGG | + | chr1.3:28851189-28851208 | None:intergenic | 35.0% | |
| TATAAATAAGGAAAGCCCAG+TGG | - | chr1.3:28851284-28851303 | MS.gene64334:intron | 35.0% | |
| TATGTGTTTGCAGTGCATAT+CGG | - | chr1.3:28849730-28849749 | MS.gene64334:intron | 35.0% | |
| TCTATTGAGTAGAAAGTGAG+AGG | - | chr1.3:28851951-28851970 | MS.gene64334:intron | 35.0% | |
| TCTTTGTCTGATGAATGAGA+TGG | - | chr1.3:28849109-28849128 | MS.gene64334:intron | 35.0% | |
| TGGAGAGAAAAGAAAATAGG+TGG | + | chr1.3:28852676-28852695 | None:intergenic | 35.0% | |
| TTATGATCTTATACCAGCAG+TGG | + | chr1.3:28851011-28851030 | None:intergenic | 35.0% | |
| ! | AATCATGACCTGATTTGTGT+TGG | - | chr1.3:28849266-28849285 | MS.gene64334:intron | 35.0% |
| ! | ACAGTGTGCCAATTTGAAAT+CGG | + | chr1.3:28851258-28851277 | None:intergenic | 35.0% |
| ! | ATCTTTTTGAATTGGTACCG+AGG | - | chr1.3:28849215-28849234 | MS.gene64334:intron | 35.0% |
| ! | ATTTCTCCTCACCAGTTTTT+GGG | + | chr1.3:28850895-28850914 | None:intergenic | 35.0% |
| ! | CAAAAACTTCGGTGTGAAAA+TGG | + | chr1.3:28852390-28852409 | None:intergenic | 35.0% |
| ! | GTCGAAACTATGTTTGGTTT+AGG | - | chr1.3:28851808-28851827 | MS.gene64334:CDS | 35.0% |
| ! | TATATGTGTATTGGTGTGTG+TGG | - | chr1.3:28853700-28853719 | MS.gene64334:intron | 35.0% |
| ! | TGATGATGAGGTTTCATTGT+AGG | - | chr1.3:28849907-28849926 | MS.gene64334:intron | 35.0% |
| ! | TGTAACAACCGAAAAGTATG+TGG | + | chr1.3:28852145-28852164 | None:intergenic | 35.0% |
| ! | TGTTGCACATTTGATTTCAC+AGG | - | chr1.3:28849509-28849528 | MS.gene64334:CDS | 35.0% |
| ! | TGTTTGGAACTTTGGACTTT+AGG | + | chr1.3:28852642-28852661 | None:intergenic | 35.0% |
| ! | TTTACATGAACGTGATGATG+AGG | - | chr1.3:28849895-28849914 | MS.gene64334:intron | 35.0% |
| ! | TTTTCGGTTGTTACAAATGG+TGG | - | chr1.3:28852150-28852169 | MS.gene64334:intron | 35.0% |
| !! | AAGAAGTATCGCAATGCAAA+AGG | - | chr1.3:28851158-28851177 | MS.gene64334:intron | 35.0% |
| !! | AATCAAGTCCTAGCTTGTTA+CGG | + | chr1.3:28853075-28853094 | None:intergenic | 35.0% |
| !! | AGAAGTATCGCAATGCAAAA+GGG | - | chr1.3:28851159-28851178 | MS.gene64334:intron | 35.0% |
| !! | ATTGTTGTCGGTTCTGTATT+GGG | - | chr1.3:28849974-28849993 | MS.gene64334:intron | 35.0% |
| !! | GGAATATGAATTTTCAGGAG+AGG | - | chr1.3:28849342-28849361 | MS.gene64334:intron | 35.0% |
| !! | GTGATATTTGATGACCCTTT+TGG | - | chr1.3:28848877-28848896 | MS.gene64334:intron | 35.0% |
| !! | TATTGTTGTCGGTTCTGTAT+TGG | - | chr1.3:28849973-28849992 | MS.gene64334:intron | 35.0% |
| !! | TGTTTTAGGTAATTCTAGCC+AGG | - | chr1.3:28851101-28851120 | MS.gene64334:intron | 35.0% |
| !! | TTGCATTCTTTTGATTGTGG+TGG | - | chr1.3:28851724-28851743 | MS.gene64334:intron | 35.0% |
| !! | TTGCTGTTCCACATACTTTT+CGG | - | chr1.3:28852134-28852153 | MS.gene64334:intron | 35.0% |
| !!! | TTTTGTTTAGGTATTGGTGC+CGG | - | chr1.3:28850306-28850325 | MS.gene64334:intron | 35.0% |
| AACAACAAGTGTTTGGATGC+AGG | + | chr1.3:28852720-28852739 | None:intergenic | 40.0% | |
| AACTTCACTTGGGTTCAAGT+TGG | + | chr1.3:28849948-28849967 | None:intergenic | 40.0% | |
| AACTTGAACCCAAGTGAAGT+TGG | - | chr1.3:28849947-28849966 | MS.gene64334:intron | 40.0% | |
| AAGAGCTAGTGAATGTCGTA+TGG | - | chr1.3:28850009-28850028 | MS.gene64334:intron | 40.0% | |
| AAGTATGTGGAACAGCAAAG+TGG | + | chr1.3:28852132-28852151 | None:intergenic | 40.0% | |
| AATACCTCTAACGGGATACA+AGG | - | chr1.3:28850467-28850486 | MS.gene64334:intron | 40.0% | |
| AATGCATCATTAGCTGACCT+AGG | - | chr1.3:28850950-28850969 | MS.gene64334:intron | 40.0% | |
| ACAACAAGTGTTTGGATGCA+GGG | + | chr1.3:28852719-28852738 | None:intergenic | 40.0% | |
| AGGTCAGCTAATGATGCATT+GGG | + | chr1.3:28850950-28850969 | None:intergenic | 40.0% | |
| AGTTGTCATGGATTCCAAAC+CGG | + | chr1.3:28850328-28850347 | None:intergenic | 40.0% | |
| ATAACGAGCTTCTACTTTCG+AGG | - | chr1.3:28849241-28849260 | MS.gene64334:intron | 40.0% | |
| CAATAAAATCGTCTCCCTGA+TGG | + | chr1.3:28852096-28852115 | None:intergenic | 40.0% | |
| CCATCTTATCTCTCCACTTA+AGG | + | chr1.3:28852417-28852436 | None:intergenic | 40.0% | |
| CCTTAAGTGGAGAGATAAGA+TGG | - | chr1.3:28852414-28852433 | MS.gene64334:CDS | 40.0% | |
| CTCTCTGCGTATATGTGTAT+TGG | - | chr1.3:28853691-28853710 | MS.gene64334:intron | 40.0% | |
| CTGAATCTGATCGATGATTC+TGG | - | chr1.3:28850079-28850098 | MS.gene64334:intron | 40.0% | |
| CTGGCAAAGGAGATAAAGTT+AGG | + | chr1.3:28850403-28850422 | None:intergenic | 40.0% | |
| GAAAATGTTGCCAATCGCTT+TGG | - | chr1.3:28850572-28850591 | MS.gene64334:intron | 40.0% | |
| GAAACAAACATCGAGAGATG+TGG | + | chr1.3:28848787-28848806 | None:intergenic | 40.0% | |
| GAATGAGATGGTGACTTGAT+CGG | - | chr1.3:28849121-28849140 | MS.gene64334:intron | 40.0% | |
| GACAACTAATCCAATGGCAT+GGG | - | chr1.3:28850341-28850360 | MS.gene64334:intron | 40.0% | |
| GAGCATCCTTGGATAAGAAA+AGG | + | chr1.3:28853852-28853871 | None:intergenic | 40.0% | |
| GATCTATCTCGCAAACACAT+TGG | + | chr1.3:28853275-28853294 | None:intergenic | 40.0% | |
| GCAAATACCTTGGTTGAAAC+TGG | + | chr1.3:28850791-28850810 | None:intergenic | 40.0% | |
| GGAGTAATATCCATGTGCAT+TGG | - | chr1.3:28853652-28853671 | MS.gene64334:intron | 40.0% | |
| GTACCTGAATACACCAAGAA+TGG | + | chr1.3:28851190-28851209 | None:intergenic | 40.0% | |
| GTATATTGCCGTAACAAGCT+AGG | - | chr1.3:28853064-28853083 | MS.gene64334:intron | 40.0% | |
| GTGGAAATTGGCAAATACCT+TGG | + | chr1.3:28850801-28850820 | None:intergenic | 40.0% | |
| TAGAAGCTCGTTATTCTCCT+CGG | + | chr1.3:28849235-28849254 | None:intergenic | 40.0% | |
| TAGATTGTGGACCCAAAAAC+TGG | - | chr1.3:28850881-28850900 | MS.gene64334:intron | 40.0% | |
| TAGGTCAGCTAATGATGCAT+TGG | + | chr1.3:28850951-28850970 | None:intergenic | 40.0% | |
| TATATACCTGTTGCTCCCAA+AGG | + | chr1.3:28853142-28853161 | None:intergenic | 40.0% | |
| TGACAACTAATCCAATGGCA+TGG | - | chr1.3:28850340-28850359 | MS.gene64334:intron | 40.0% | |
| TGATGTAGCTGCTGCTATAA+GGG | - | chr1.3:28850191-28850210 | MS.gene64334:intron | 40.0% | |
| TGTAAATTGTGAGCAGGTAC+TGG | - | chr1.3:28853754-28853773 | MS.gene64334:intron | 40.0% | |
| TGTCTGTTAACTGTCCTAAC+CGG | + | chr1.3:28850144-28850163 | None:intergenic | 40.0% | |
| TTGGAACTTTGGACTTTAGG+TGG | + | chr1.3:28852639-28852658 | None:intergenic | 40.0% | |
| ! | ACTCATCACGCTTGTCTTTT+AGG | - | chr1.3:28852349-28852368 | MS.gene64334:intron | 40.0% |
| ! | AGGGAGACGATTTTATTGGT+GGG | - | chr1.3:28852098-28852117 | MS.gene64334:intron | 40.0% |
| ! | AGGGCTGGATTTTATGACAT+TGG | - | chr1.3:28850210-28850229 | MS.gene64334:intron | 40.0% |
| ! | CAATGTTAATGGAGGTGCAA+TGG | - | chr1.3:28853105-28853124 | MS.gene64334:intron | 40.0% |
| ! | CATCAGGGAGACGATTTTAT+TGG | - | chr1.3:28852094-28852113 | MS.gene64334:intron | 40.0% |
| ! | GATTTCTCCTCACCAGTTTT+TGG | + | chr1.3:28850896-28850915 | None:intergenic | 40.0% |
| ! | GGACAACCTTTTCTTATCCA+AGG | - | chr1.3:28853843-28853862 | MS.gene64334:CDS | 40.0% |
| ! | TACCCATTCTTGGTGTATTC+AGG | - | chr1.3:28851184-28851203 | MS.gene64334:intron | 40.0% |
| ! | TATGTGCTATTGCGCTCAAT+TGG | + | chr1.3:28851606-28851625 | None:intergenic | 40.0% |
| ! | TTTTCAGAGGTAATCCCCAT+TGG | + | chr1.3:28850557-28850576 | None:intergenic | 40.0% |
| !! | ACACAGCTTTAAGCTTTCCT+AGG | + | chr1.3:28850970-28850989 | None:intergenic | 40.0% |
| !! | CACGCTTGTCTTTTAGGAAA+TGG | - | chr1.3:28852355-28852374 | MS.gene64334:CDS | 40.0% |
| !! | CCCTTGCATTCTTTTGATTG+TGG | - | chr1.3:28851721-28851740 | MS.gene64334:intron | 40.0% |
| !! | GAAGTATCGCAATGCAAAAG+GGG | - | chr1.3:28851160-28851179 | MS.gene64334:intron | 40.0% |
| !! | TGCCATTGGATTAGTTGTCA+TGG | + | chr1.3:28850340-28850359 | None:intergenic | 40.0% |
| !!! | GCATTTTATGCTGGTTTTCC+TGG | - | chr1.3:28850034-28850053 | MS.gene64334:intron | 40.0% |
| AAAACTGCCTCCTTCCAATG+GGG | - | chr1.3:28850540-28850559 | MS.gene64334:intron | 45.0% | |
| AAACCTTCAAAACAGGAGCC+AGG | + | chr1.3:28849812-28849831 | None:intergenic | 45.0% | |
| AATGGCAATTGGGCATCCTT+TGG | - | chr1.3:28853123-28853142 | MS.gene64334:intron | 45.0% | |
| AATTCTAGCCAGGTGAGTGA+TGG | - | chr1.3:28851111-28851130 | MS.gene64334:intron | 45.0% | |
| ACTAATCCAATGGCATGGGA+TGG | - | chr1.3:28850345-28850364 | MS.gene64334:intron | 45.0% | |
| AGAAAAGGTTGTCCCCTTTG+CGG | + | chr1.3:28853837-28853856 | None:intergenic | 45.0% | |
| AGTGAGTGTACCAATGCACA+TGG | + | chr1.3:28853665-28853684 | None:intergenic | 45.0% | |
| ATCACAGGACAGCTGCATTT+GGG | - | chr1.3:28849565-28849584 | MS.gene64334:intron | 45.0% | |
| ATGGCAATTGGGCATCCTTT+GGG | - | chr1.3:28853124-28853143 | MS.gene64334:intron | 45.0% | |
| CAAAACTGCCTCCTTCCAAT+GGG | - | chr1.3:28850539-28850558 | MS.gene64334:intron | 45.0% | |
| CAACATGACACTGAGACATG+TGG | + | chr1.3:28853335-28853354 | None:intergenic | 45.0% | |
| CCTTGAAACTCCAAAGCGAT+TGG | + | chr1.3:28850585-28850604 | None:intergenic | 45.0% | |
| CTGATGTAGCTGCTGCTATA+AGG | - | chr1.3:28850190-28850209 | MS.gene64334:intron | 45.0% | |
| CTTTGCAAAGCTAAACGTGG+TGG | - | chr1.3:28849759-28849778 | MS.gene64334:intron | 45.0% | |
| GCTCTTTGCAAAGCTAAACG+TGG | - | chr1.3:28849756-28849775 | MS.gene64334:intron | 45.0% | |
| GGGTCGAATTCCATCATCAA+CGG | + | chr1.3:28850930-28850949 | None:intergenic | 45.0% | |
| TATCACAGGACAGCTGCATT+TGG | - | chr1.3:28849564-28849583 | MS.gene64334:intron | 45.0% | |
| TGATCTTATACCAGCAGTGG+TGG | + | chr1.3:28851008-28851027 | None:intergenic | 45.0% | |
| TGCAATTCCAGTTGCTGTGA+AGG | - | chr1.3:28852890-28852909 | MS.gene64334:intron | 45.0% | |
| TGTCCAGACACACCTTCAAA+CGG | - | chr1.3:28853356-28853375 | MS.gene64334:intron | 45.0% | |
| TGTTTGGATGCAGGGAGTAA+TGG | + | chr1.3:28852711-28852730 | None:intergenic | 45.0% | |
| TTCACAGGCTTCAGCATGTT+TGG | - | chr1.3:28849524-28849543 | MS.gene64334:intron | 45.0% | |
| TTCTGTCTGACCCTTTGCTT+TGG | - | chr1.3:28849370-28849389 | MS.gene64334:intron | 45.0% | |
| TTGCATGAAATGAAGCGACG+TGG | - | chr1.3:28853613-28853632 | MS.gene64334:intron | 45.0% | |
| ! | AATGGAGGTGCAATGGCAAT+TGG | - | chr1.3:28853112-28853131 | MS.gene64334:intron | 45.0% |
| ! | ACACCTTCAAACGGAAGTGT+TGG | - | chr1.3:28853365-28853384 | MS.gene64334:intron | 45.0% |
| ! | ATGGAGGTGCAATGGCAATT+GGG | - | chr1.3:28853113-28853132 | MS.gene64334:intron | 45.0% |
| ! | CAGGGAGACGATTTTATTGG+TGG | - | chr1.3:28852097-28852116 | MS.gene64334:intron | 45.0% |
| ! | CATTGGAAGGAGGCAGTTTT+GGG | + | chr1.3:28850540-28850559 | None:intergenic | 45.0% |
| ! | CGTATGGCTGCATTTTATGC+TGG | - | chr1.3:28850025-28850044 | MS.gene64334:intron | 45.0% |
| ! | GCGATTGGCAACATTTTCAG+AGG | + | chr1.3:28850570-28850589 | None:intergenic | 45.0% |
| ! | GTCACCATTTCCGTTGATGA+TGG | - | chr1.3:28850917-28850936 | MS.gene64334:intron | 45.0% |
| ! | GTTGATAGGTTGAGTCTCAC+AGG | - | chr1.3:28850717-28850736 | MS.gene64334:intron | 45.0% |
| !! | ATTGTGAGCAGGTACTGGAA+TGG | - | chr1.3:28853759-28853778 | MS.gene64334:intron | 45.0% |
| !! | CCAATCGCTTTGGAGTTTCA+AGG | - | chr1.3:28850582-28850601 | MS.gene64334:intron | 45.0% |
| !! | TATCCTGGCTCCTGTTTTGA+AGG | - | chr1.3:28849806-28849825 | MS.gene64334:intron | 45.0% |
| !! | TTCCTGCTTTTCGTCCATCA+GGG | - | chr1.3:28852079-28852098 | MS.gene64334:intron | 45.0% |
| !! | TTGTGAGCAGGTACTGGAAT+GGG | - | chr1.3:28853760-28853779 | MS.gene64334:intron | 45.0% |
| !! | TTTAGGTATTGGTGCCGGTT+TGG | - | chr1.3:28850311-28850330 | MS.gene64334:intron | 45.0% |
| AAAGAGCAGGGCAATCCACT+GGG | + | chr1.3:28851302-28851321 | None:intergenic | 50.0% | |
| ACAGGAGCCAGGATATCATC+AGG | + | chr1.3:28849801-28849820 | None:intergenic | 50.0% | |
| ACAGGCTTCAGCATGTTTGG+CGG | - | chr1.3:28849527-28849546 | MS.gene64334:intron | 50.0% | |
| ACGACCTTGTATCCCGTTAG+AGG | + | chr1.3:28850474-28850493 | None:intergenic | 50.0% | |
| ACTGATCCATCCCATGCCAT+TGG | + | chr1.3:28850354-28850373 | None:intergenic | 50.0% | |
| AGCTTTGCAATGCCCGCAAA+GGG | - | chr1.3:28853821-28853840 | MS.gene64334:CDS | 50.0% | |
| AGGTAATCCCCATTGGAAGG+AGG | + | chr1.3:28850550-28850569 | None:intergenic | 50.0% | |
| CAAAAGGGGCTACCCATTCT+TGG | - | chr1.3:28851174-28851193 | MS.gene64334:intron | 50.0% | |
| CAACTGGAATTGCAGCAGCT+GGG | + | chr1.3:28852884-28852903 | None:intergenic | 50.0% | |
| CACTCACCCTGATGATATCC+TGG | - | chr1.3:28849791-28849810 | MS.gene64334:intron | 50.0% | |
| CAGAGGTAATCCCCATTGGA+AGG | + | chr1.3:28850553-28850572 | None:intergenic | 50.0% | |
| CAGGAGCCAGGATATCATCA+GGG | + | chr1.3:28849800-28849819 | None:intergenic | 50.0% | |
| CCAAAACTGCCTCCTTCCAA+TGG | - | chr1.3:28850538-28850557 | MS.gene64334:intron | 50.0% | |
| GAAAAGGTTGTCCCCTTTGC+GGG | + | chr1.3:28853836-28853855 | None:intergenic | 50.0% | |
| GATGGTGACTTGATCGGTGT+TGG | - | chr1.3:28849127-28849146 | MS.gene64334:intron | 50.0% | |
| GCACCAACACTTCCGTTTGA+AGG | + | chr1.3:28853371-28853390 | None:intergenic | 50.0% | |
| GTCGCAGTACCCCTTTATTG+TGG | - | chr1.3:28851683-28851702 | MS.gene64334:intron | 50.0% | |
| TAAAGAGCAGGGCAATCCAC+TGG | + | chr1.3:28851303-28851322 | None:intergenic | 50.0% | |
| TCACAGGACAGCTGCATTTG+GGG | - | chr1.3:28849566-28849585 | MS.gene64334:intron | 50.0% | |
| TGAAATGAAGCGACGTGGCA+AGG | - | chr1.3:28853618-28853637 | MS.gene64334:intron | 50.0% | |
| TGCGACACAGTGCAGAAAAC+AGG | + | chr1.3:28851669-28851688 | None:intergenic | 50.0% | |
| TGGATGCAGGGAGTAATGGT+AGG | + | chr1.3:28852707-28852726 | None:intergenic | 50.0% | |
| TGTAGGAGTTTCGTCGCAGT+TGG | - | chr1.3:28852831-28852850 | MS.gene64334:intron | 50.0% | |
| TGTGGACCCAAAAACTGGTG+AGG | - | chr1.3:28850886-28850905 | MS.gene64334:intron | 50.0% | |
| TTTCCATCCAGAGACTGTGC+CGG | - | chr1.3:28850122-28850141 | MS.gene64334:intron | 50.0% | |
| ! | CCATTGGAAGGAGGCAGTTT+TGG | + | chr1.3:28850541-28850560 | None:intergenic | 50.0% |
| ! | CTGATGGACGAAAAGCAGGA+AGG | + | chr1.3:28852080-28852099 | None:intergenic | 50.0% |
| ! | CTTCCGTTTGAAGGTGTGTC+TGG | + | chr1.3:28853362-28853381 | None:intergenic | 50.0% |
| !! | CTTCCTGCTTTTCGTCCATC+AGG | - | chr1.3:28852078-28852097 | MS.gene64334:intron | 50.0% |
| !! | GAGACAGTGCTGCTTATCAC+AGG | - | chr1.3:28849550-28849569 | MS.gene64334:intron | 50.0% |
| !! | GCAGCTGCAGTTTTTGAGAG+AGG | - | chr1.3:28853784-28853803 | MS.gene64334:CDS | 50.0% |
| !! | GGTGTTGATCCTGCCATCAT+GGG | - | chr1.3:28852852-28852871 | MS.gene64334:intron | 50.0% |
| !! | TGGTGTTGATCCTGCCATCA+TGG | - | chr1.3:28852851-28852870 | MS.gene64334:intron | 50.0% |
| !! | TGTGAGCAGGTACTGGAATG+GGG | - | chr1.3:28853761-28853780 | MS.gene64334:intron | 50.0% |
| AAAGACGGAACCACCACTGC+TGG | - | chr1.3:28850995-28851014 | MS.gene64334:intron | 55.0% | |
| AGCTGCATTTGGGGACGATG+TGG | - | chr1.3:28849575-28849594 | MS.gene64334:intron | 55.0% | |
| CAGGCTTCAGCATGTTTGGC+GGG | - | chr1.3:28849528-28849547 | MS.gene64334:intron | 55.0% | |
| GAGCTTTGCAATGCCCGCAA+AGG | - | chr1.3:28853820-28853839 | MS.gene64334:CDS | 55.0% | |
| GATCCTGCCATCATGGGTGT+TGG | - | chr1.3:28852858-28852877 | MS.gene64334:intron | 55.0% | |
| GCAACTGGAATTGCAGCAGC+TGG | + | chr1.3:28852885-28852904 | None:intergenic | 55.0% | |
| GCTTTGCAATGCCCGCAAAG+GGG | - | chr1.3:28853822-28853841 | MS.gene64334:CDS | 55.0% | |
| GTAGCTGCTGCTATAAGGGC+TGG | - | chr1.3:28850195-28850214 | MS.gene64334:intron | 55.0% | |
| TAACCGGCACAGTCTCTGGA+TGG | + | chr1.3:28850128-28850147 | None:intergenic | 55.0% | |
| ! | CTCCCTGATGGACGAAAAGC+AGG | + | chr1.3:28852084-28852103 | None:intergenic | 55.0% |
| ! | GTCGGTTCTGTATTGGGAGC+TGG | - | chr1.3:28849980-28849999 | MS.gene64334:intron | 55.0% |
| !! | ATCCAGAGACTGTGCCGGTT+AGG | - | chr1.3:28850127-28850146 | MS.gene64334:intron | 55.0% |
| !! | GTGAGCAGGTACTGGAATGG+GGG | - | chr1.3:28853762-28853781 | MS.gene64334:intron | 55.0% |
| AGCTGGGCCAACACCCATGA+TGG | + | chr1.3:28852868-28852887 | None:intergenic | 60.0% | |
| CCAGTTGCTGTGAAGGCTGC+AGG | - | chr1.3:28852897-28852916 | MS.gene64334:intron | 60.0% | |
| CCTGCAGCCTTCACAGCAAC+TGG | + | chr1.3:28852900-28852919 | None:intergenic | 60.0% | |
| CGTGGCAAGGACTGCCGATA+TGG | - | chr1.3:28853631-28853650 | MS.gene64334:intron | 60.0% | |
| CTCCAGCACCATCACTCACC+TGG | + | chr1.3:28851122-28851141 | None:intergenic | 60.0% | |
| GGTTGAGTCTCACAGGCGAG+CGG | - | chr1.3:28850724-28850743 | MS.gene64334:intron | 60.0% | |
| GTCCTAACCGGCACAGTCTC+TGG | + | chr1.3:28850132-28850151 | None:intergenic | 60.0% | |
| ! | AGCCAGGTGAGTGATGGTGC+TGG | - | chr1.3:28851117-28851136 | MS.gene64334:intron | 60.0% |
| ! | GGGCATCCTTTGGGAGCAAC+AGG | - | chr1.3:28853133-28853152 | MS.gene64334:intron | 60.0% |
| GGGCCAACACCCATGATGGC+AGG | + | chr1.3:28852864-28852883 | None:intergenic | 65.0% | |
| GCGGCTGCTGCTACTGCTGC+TGG | - | chr1.3:28850743-28850762 | MS.gene64334:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 28848705 | 28853876 | 28848705 | ID=MS.gene64334 |
| chr1.3 | mRNA | 28848705 | 28853876 | 28848705 | ID=MS.gene64334.t1;Parent=MS.gene64334 |
| chr1.3 | exon | 28853784 | 28853876 | 28853784 | ID=MS.gene64334.t1.exon1;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28853784 | 28853876 | 28853784 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28852974 | 28853050 | 28852974 | ID=MS.gene64334.t1.exon2;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28852974 | 28853050 | 28852974 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28852754 | 28852838 | 28852754 | ID=MS.gene64334.t1.exon3;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28852754 | 28852838 | 28852754 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28852526 | 28852652 | 28852526 | ID=MS.gene64334.t1.exon4;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28852526 | 28852652 | 28852526 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28852350 | 28852448 | 28852350 | ID=MS.gene64334.t1.exon5;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28852350 | 28852448 | 28852350 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28852198 | 28852265 | 28852198 | ID=MS.gene64334.t1.exon6;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28852198 | 28852265 | 28852198 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28851956 | 28852063 | 28851956 | ID=MS.gene64334.t1.exon7;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28851956 | 28852063 | 28851956 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28851779 | 28851856 | 28851779 | ID=MS.gene64334.t1.exon8;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28851779 | 28851856 | 28851779 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28851565 | 28851697 | 28851565 | ID=MS.gene64334.t1.exon9;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28851565 | 28851697 | 28851565 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28851376 | 28851472 | 28851376 | ID=MS.gene64334.t1.exon10;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28851376 | 28851472 | 28851376 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28849622 | 28849745 | 28849622 | ID=MS.gene64334.t1.exon11;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28849622 | 28849745 | 28849622 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28849427 | 28849535 | 28849427 | ID=MS.gene64334.t1.exon12;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28849427 | 28849535 | 28849427 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28848908 | 28848991 | 28848908 | ID=MS.gene64334.t1.exon13;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28848908 | 28848991 | 28848908 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| chr1.3 | exon | 28848705 | 28848811 | 28848705 | ID=MS.gene64334.t1.exon14;Parent=MS.gene64334.t1 |
| chr1.3 | CDS | 28848705 | 28848811 | 28848705 | ID=cds.MS.gene64334.t1;Parent=MS.gene64334.t1 |
| Gene Sequence |
| Protein sequence |
