Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65091.t1 | XP_003622929.1 | 94.3 | 784 | 45 | 0 | 1 | 784 | 1 | 784 | 0.00E+00 | 1267.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65091.t1 | O48847 | 57.8 | 790 | 316 | 13 | 8 | 784 | 2 | 787 | 2.3e-222 | 773.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65091.t1 | G7L191 | 94.3 | 784 | 45 | 0 | 1 | 784 | 1 | 784 | 0.0e+00 | 1267.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene65091.t1 | TR | LUG |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050689 | MS.gene65091 | 0.802972 | 4.35E-49 | -1.69E-46 |
MS.gene052665 | MS.gene65091 | 0.811422 | 7.06E-51 | -1.69E-46 |
MS.gene053079 | MS.gene65091 | 0.809394 | 1.93E-50 | -1.69E-46 |
MS.gene053144 | MS.gene65091 | 0.827476 | 1.53E-54 | -1.69E-46 |
MS.gene05364 | MS.gene65091 | 0.811816 | 5.79E-51 | -1.69E-46 |
MS.gene054584 | MS.gene65091 | 0.835549 | 1.57E-56 | -1.69E-46 |
MS.gene055891 | MS.gene65091 | 0.807272 | 5.48E-50 | -1.69E-46 |
MS.gene056507 | MS.gene65091 | 0.806282 | 8.87E-50 | -1.69E-46 |
MS.gene056553 | MS.gene65091 | 0.802145 | 6.44E-49 | -1.69E-46 |
MS.gene05978 | MS.gene65091 | 0.821186 | 4.62E-53 | -1.69E-46 |
MS.gene060194 | MS.gene65091 | 0.813794 | 2.14E-51 | -1.69E-46 |
MS.gene060587 | MS.gene65091 | 0.818271 | 2.14E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65091.t1 | MTR_7g058460 | 98.852 | 784 | 9 | 0 | 1 | 784 | 1 | 784 | 0.0 | 1613 |
MS.gene65091.t1 | MTR_7g058440 | 94.515 | 784 | 34 | 1 | 1 | 784 | 1 | 775 | 0.0 | 1432 |
MS.gene65091.t1 | MTR_1g050340 | 63.579 | 788 | 273 | 12 | 8 | 784 | 2 | 786 | 0.0 | 957 |
MS.gene65091.t1 | MTR_1g050340 | 63.498 | 789 | 273 | 13 | 8 | 784 | 2 | 787 | 0.0 | 952 |
MS.gene65091.t1 | MTR_1g011610 | 43.488 | 929 | 336 | 24 | 8 | 784 | 2 | 893 | 0.0 | 615 |
MS.gene65091.t1 | MTR_1g011610 | 43.010 | 937 | 338 | 25 | 8 | 784 | 2 | 902 | 0.0 | 609 |
MS.gene65091.t1 | MTR_3g107910 | 41.335 | 779 | 313 | 24 | 114 | 784 | 155 | 897 | 2.36e-157 | 481 |
MS.gene65091.t1 | MTR_3g107910 | 40.840 | 786 | 314 | 24 | 114 | 784 | 155 | 904 | 6.67e-155 | 474 |
MS.gene65091.t1 | MTR_4g113080 | 33.951 | 810 | 429 | 26 | 18 | 784 | 35 | 781 | 6.10e-124 | 390 |
MS.gene65091.t1 | MTR_2g014020 | 42.938 | 354 | 192 | 6 | 437 | 784 | 175 | 524 | 2.66e-95 | 307 |
MS.gene65091.t1 | MTR_2g014020 | 42.259 | 239 | 132 | 4 | 437 | 671 | 175 | 411 | 5.99e-57 | 201 |
MS.gene65091.t1 | MTR_4g088620 | 36.101 | 277 | 174 | 3 | 510 | 784 | 33 | 308 | 3.08e-56 | 195 |
MS.gene65091.t1 | MTR_4g088640 | 39.236 | 288 | 168 | 5 | 500 | 784 | 100 | 383 | 2.09e-55 | 195 |
MS.gene65091.t1 | MTR_4g088625 | 36.860 | 293 | 176 | 6 | 496 | 784 | 12 | 299 | 8.71e-54 | 188 |
MS.gene65091.t1 | MTR_4g088665 | 36.655 | 281 | 170 | 5 | 510 | 784 | 104 | 382 | 6.41e-52 | 186 |
MS.gene65091.t1 | MTR_4g088635 | 36.585 | 287 | 168 | 6 | 509 | 784 | 100 | 383 | 1.27e-50 | 182 |
MS.gene65091.t1 | MTR_4g088660 | 36.101 | 277 | 174 | 3 | 509 | 784 | 207 | 481 | 3.81e-50 | 183 |
MS.gene65091.t1 | MTR_4g088670 | 36.364 | 275 | 157 | 5 | 509 | 778 | 28 | 289 | 9.61e-48 | 171 |
MS.gene65091.t1 | MTR_4g088675 | 31.535 | 241 | 120 | 6 | 548 | 784 | 21 | 220 | 4.42e-32 | 124 |
MS.gene65091.t1 | MTR_5g022690 | 23.948 | 309 | 204 | 9 | 500 | 783 | 173 | 475 | 5.25e-20 | 94.7 |
MS.gene65091.t1 | MTR_3g045130 | 26.990 | 289 | 163 | 7 | 500 | 783 | 265 | 510 | 1.16e-18 | 90.5 |
MS.gene65091.t1 | MTR_4g119620 | 23.418 | 316 | 185 | 9 | 483 | 783 | 4 | 277 | 3.15e-18 | 87.0 |
MS.gene65091.t1 | MTR_4g119620 | 23.457 | 243 | 174 | 6 | 510 | 742 | 81 | 321 | 4.41e-12 | 68.6 |
MS.gene65091.t1 | MTR_1g072140 | 25.436 | 287 | 166 | 8 | 504 | 783 | 23 | 268 | 7.75e-18 | 85.9 |
MS.gene65091.t1 | MTR_4g095058 | 25.882 | 255 | 170 | 8 | 510 | 750 | 292 | 541 | 2.25e-16 | 83.6 |
MS.gene65091.t1 | MTR_4g095058 | 25.882 | 255 | 170 | 8 | 510 | 750 | 290 | 539 | 3.10e-16 | 83.2 |
MS.gene65091.t1 | MTR_8g038550 | 19.728 | 294 | 225 | 8 | 498 | 783 | 174 | 464 | 6.16e-15 | 79.3 |
MS.gene65091.t1 | MTR_6g004040 | 25.000 | 216 | 156 | 4 | 520 | 731 | 30 | 243 | 2.31e-14 | 77.4 |
MS.gene65091.t1 | MTR_1g090827 | 23.529 | 272 | 172 | 7 | 510 | 748 | 54 | 322 | 2.86e-13 | 74.3 |
MS.gene65091.t1 | MTR_1g044720 | 26.738 | 187 | 131 | 4 | 521 | 702 | 236 | 421 | 7.06e-13 | 72.4 |
MS.gene65091.t1 | MTR_4g071130 | 22.426 | 272 | 175 | 8 | 510 | 748 | 54 | 322 | 9.34e-13 | 72.8 |
MS.gene65091.t1 | MTR_2g012630 | 23.611 | 216 | 159 | 4 | 520 | 731 | 29 | 242 | 2.46e-12 | 71.2 |
MS.gene65091.t1 | MTR_2g012630 | 23.611 | 216 | 159 | 4 | 520 | 731 | 29 | 242 | 2.69e-12 | 71.2 |
MS.gene65091.t1 | MTR_8g092620 | 21.631 | 282 | 210 | 7 | 510 | 784 | 21 | 298 | 2.82e-12 | 68.9 |
MS.gene65091.t1 | MTR_2g102277 | 23.923 | 209 | 153 | 3 | 510 | 712 | 60 | 268 | 2.83e-12 | 70.9 |
MS.gene65091.t1 | MTR_2g102277 | 23.923 | 209 | 153 | 3 | 510 | 712 | 60 | 268 | 3.16e-12 | 70.9 |
MS.gene65091.t1 | MTR_4g011950 | 23.923 | 209 | 153 | 3 | 510 | 712 | 60 | 268 | 3.87e-12 | 70.5 |
MS.gene65091.t1 | MTR_4g105700 | 20.423 | 284 | 207 | 5 | 518 | 783 | 371 | 653 | 6.91e-12 | 69.7 |
MS.gene65091.t1 | MTR_3g106080 | 27.746 | 173 | 119 | 4 | 499 | 667 | 452 | 622 | 9.89e-12 | 68.9 |
MS.gene65091.t1 | MTR_3g106080 | 22.707 | 229 | 164 | 6 | 510 | 729 | 422 | 646 | 4.02e-11 | 67.0 |
MS.gene65091.t1 | MTR_5g016350 | 23.320 | 253 | 175 | 8 | 510 | 748 | 297 | 544 | 1.78e-11 | 68.2 |
MS.gene65091.t1 | MTR_5g016350 | 21.290 | 310 | 207 | 10 | 507 | 783 | 233 | 538 | 8.29e-11 | 65.9 |
MS.gene65091.t1 | MTR_5g016350 | 23.320 | 253 | 175 | 8 | 510 | 748 | 233 | 480 | 1.97e-11 | 67.8 |
MS.gene65091.t1 | MTR_5g016350 | 21.290 | 310 | 207 | 10 | 507 | 783 | 169 | 474 | 8.63e-11 | 65.5 |
MS.gene65091.t1 | MTR_1g097140 | 22.909 | 275 | 198 | 7 | 517 | 783 | 91 | 359 | 5.76e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65091.t1 | AT2G32700 | 61.168 | 788 | 291 | 13 | 8 | 784 | 2 | 785 | 0.0 | 924 |
MS.gene65091.t1 | AT2G32700 | 61.013 | 790 | 291 | 14 | 8 | 784 | 2 | 787 | 0.0 | 919 |
MS.gene65091.t1 | AT2G32700 | 61.013 | 790 | 291 | 14 | 8 | 784 | 2 | 787 | 0.0 | 919 |
MS.gene65091.t1 | AT2G32700 | 61.013 | 790 | 291 | 14 | 8 | 784 | 2 | 787 | 0.0 | 919 |
MS.gene65091.t1 | AT2G32700 | 61.013 | 790 | 291 | 14 | 8 | 784 | 2 | 787 | 0.0 | 919 |
MS.gene65091.t1 | AT2G32700 | 61.013 | 790 | 291 | 14 | 8 | 784 | 2 | 787 | 0.0 | 919 |
MS.gene65091.t1 | AT2G32700 | 59.580 | 809 | 291 | 15 | 8 | 784 | 2 | 806 | 0.0 | 908 |
MS.gene65091.t1 | AT4G32551 | 55.000 | 420 | 172 | 6 | 373 | 784 | 521 | 931 | 9.05e-146 | 451 |
MS.gene65091.t1 | AT4G32551 | 83.908 | 87 | 14 | 0 | 8 | 94 | 2 | 88 | 1.18e-42 | 167 |
MS.gene65091.t1 | AT4G32551 | 37.674 | 215 | 95 | 10 | 113 | 303 | 185 | 384 | 2.15e-17 | 87.8 |
MS.gene65091.t1 | AT4G32551 | 55.000 | 420 | 172 | 6 | 373 | 784 | 559 | 969 | 3.36e-145 | 451 |
MS.gene65091.t1 | AT4G32551 | 83.908 | 87 | 14 | 0 | 8 | 94 | 2 | 88 | 1.39e-42 | 167 |
MS.gene65091.t1 | AT4G32551 | 35.124 | 242 | 102 | 12 | 113 | 303 | 185 | 422 | 5.74e-15 | 79.7 |
MS.gene65091.t1 | AT2G41500 | 25.979 | 281 | 198 | 7 | 510 | 783 | 258 | 535 | 2.76e-21 | 99.0 |
MS.gene65091.t1 | AT2G41500 | 25.979 | 281 | 198 | 7 | 510 | 783 | 258 | 535 | 2.76e-21 | 99.0 |
MS.gene65091.t1 | AT3G49660 | 27.273 | 286 | 156 | 9 | 510 | 784 | 27 | 271 | 1.41e-19 | 90.9 |
MS.gene65091.t1 | AT3G49660 | 24.691 | 243 | 133 | 8 | 507 | 700 | 71 | 312 | 9.40e-12 | 67.4 |
MS.gene65091.t1 | AT4G02730 | 25.430 | 291 | 162 | 7 | 499 | 783 | 44 | 285 | 2.01e-19 | 90.9 |
MS.gene65091.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 498 | 783 | 114 | 404 | 4.64e-18 | 89.4 |
MS.gene65091.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 498 | 783 | 102 | 392 | 5.67e-18 | 89.0 |
MS.gene65091.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 498 | 783 | 102 | 392 | 6.48e-18 | 88.6 |
MS.gene65091.t1 | AT5G13480 | 22.789 | 294 | 216 | 9 | 498 | 783 | 125 | 415 | 8.17e-18 | 88.6 |
MS.gene65091.t1 | AT1G11160 | 22.222 | 216 | 162 | 4 | 520 | 731 | 29 | 242 | 1.27e-13 | 75.5 |
MS.gene65091.t1 | AT1G11160 | 22.222 | 216 | 162 | 4 | 520 | 731 | 29 | 242 | 1.28e-13 | 75.5 |
MS.gene65091.t1 | AT5G25150 | 30.058 | 173 | 115 | 5 | 499 | 667 | 451 | 621 | 1.41e-13 | 75.1 |
MS.gene65091.t1 | AT5G25150 | 20.629 | 286 | 195 | 7 | 501 | 757 | 346 | 628 | 6.15e-11 | 66.6 |
MS.gene65091.t1 | AT5G25150 | 30.058 | 173 | 115 | 5 | 499 | 667 | 451 | 621 | 1.57e-13 | 74.7 |
MS.gene65091.t1 | AT5G25150 | 20.629 | 286 | 195 | 7 | 501 | 757 | 346 | 628 | 8.27e-11 | 66.2 |
MS.gene65091.t1 | AT1G11160 | 22.222 | 216 | 162 | 4 | 520 | 731 | 29 | 242 | 1.62e-13 | 75.1 |
MS.gene65091.t1 | AT1G61210 | 22.711 | 273 | 194 | 9 | 520 | 783 | 29 | 293 | 1.63e-13 | 75.1 |
MS.gene65091.t1 | AT5G08390 | 24.352 | 193 | 140 | 4 | 520 | 708 | 30 | 220 | 2.60e-13 | 74.3 |
MS.gene65091.t1 | AT1G61210 | 22.711 | 273 | 194 | 9 | 520 | 783 | 29 | 293 | 2.61e-13 | 74.7 |
MS.gene65091.t1 | AT1G61210 | 22.711 | 273 | 194 | 9 | 520 | 783 | 29 | 293 | 2.97e-13 | 74.3 |
MS.gene65091.t1 | AT1G62020 | 22.426 | 272 | 175 | 7 | 510 | 748 | 54 | 322 | 3.18e-13 | 74.3 |
MS.gene65091.t1 | AT2G21390 | 22.490 | 249 | 158 | 7 | 510 | 725 | 54 | 300 | 3.47e-13 | 74.3 |
MS.gene65091.t1 | AT5G23430 | 24.352 | 193 | 140 | 4 | 520 | 708 | 30 | 220 | 4.05e-13 | 73.6 |
MS.gene65091.t1 | AT5G23430 | 24.352 | 193 | 140 | 4 | 520 | 708 | 30 | 220 | 4.12e-13 | 73.6 |
MS.gene65091.t1 | AT5G23430 | 24.352 | 193 | 140 | 4 | 520 | 708 | 30 | 220 | 4.12e-13 | 73.6 |
MS.gene65091.t1 | AT2G33340 | 25.781 | 256 | 173 | 8 | 521 | 769 | 236 | 481 | 8.85e-13 | 72.0 |
MS.gene65091.t1 | AT2G33340 | 25.781 | 256 | 173 | 8 | 521 | 769 | 236 | 481 | 8.85e-13 | 72.0 |
MS.gene65091.t1 | AT2G33340 | 25.781 | 256 | 173 | 8 | 521 | 769 | 236 | 481 | 1.27e-12 | 71.2 |
MS.gene65091.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 510 | 712 | 60 | 268 | 1.34e-12 | 72.0 |
MS.gene65091.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 510 | 712 | 60 | 268 | 1.34e-12 | 72.0 |
MS.gene65091.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 510 | 712 | 60 | 268 | 1.73e-12 | 71.6 |
MS.gene65091.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 510 | 712 | 60 | 268 | 1.82e-12 | 71.6 |
MS.gene65091.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 510 | 712 | 60 | 268 | 1.82e-12 | 71.6 |
MS.gene65091.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 510 | 712 | 60 | 268 | 1.82e-12 | 71.6 |
MS.gene65091.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 510 | 712 | 60 | 268 | 1.82e-12 | 71.6 |
MS.gene65091.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 510 | 712 | 60 | 268 | 1.86e-12 | 71.6 |
MS.gene65091.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 510 | 712 | 60 | 268 | 2.03e-12 | 71.6 |
MS.gene65091.t1 | AT3G15980 | 24.402 | 209 | 152 | 3 | 510 | 712 | 60 | 268 | 2.22e-12 | 71.2 |
MS.gene65091.t1 | AT5G16750 | 21.631 | 282 | 202 | 5 | 520 | 783 | 372 | 652 | 3.21e-12 | 70.9 |
MS.gene65091.t1 | AT1G52360 | 23.923 | 209 | 153 | 3 | 510 | 712 | 104 | 312 | 3.22e-12 | 70.9 |
MS.gene65091.t1 | AT1G71840 | 25.088 | 283 | 188 | 10 | 517 | 783 | 81 | 355 | 7.42e-12 | 68.6 |
MS.gene65091.t1 | AT5G67320 | 24.204 | 314 | 187 | 9 | 509 | 783 | 267 | 568 | 1.82e-11 | 68.2 |
MS.gene65091.t1 | AT1G79990 | 23.445 | 209 | 154 | 3 | 510 | 712 | 60 | 268 | 5.16e-11 | 67.0 |
MS.gene65091.t1 | AT1G79990 | 23.445 | 209 | 154 | 3 | 510 | 712 | 60 | 268 | 5.84e-11 | 66.6 |
MS.gene65091.t1 | AT5G60940 | 23.478 | 230 | 147 | 10 | 544 | 748 | 118 | 343 | 9.02e-11 | 65.5 |
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATATCTTCACCAAATT+TGG | 0.073622 | 7.1:-43271795 | None:intergenic |
ATGGATCCACGCAGACTTTC+TGG | 0.168111 | 7.1:+43268519 | MS.gene65091:CDS |
GGCATCTATTAGTCCAAATT+TGG | 0.206338 | 7.1:+43271782 | MS.gene65091:CDS |
TGGTTCTGCGTTGTTAAATT+AGG | 0.217015 | 7.1:-43268411 | None:intergenic |
AGCCTTGGAAATTCTAATTA+TGG | 0.228558 | 7.1:+43268492 | MS.gene65091:CDS |
CAGCTGGTTCATGGTAATTC+AGG | 0.240342 | 7.1:+43267118 | MS.gene65091:CDS |
TGGGTCAAGCTCAAAGTAAT+TGG | 0.252250 | 7.1:+43265682 | MS.gene65091:CDS |
AGAAAGCAAGCTTCTTCTTC+TGG | 0.265001 | 7.1:+43269334 | MS.gene65091:CDS |
GAATCCATGGGAAAATTCTT+TGG | 0.267475 | 7.1:-43267340 | None:intergenic |
TTGAGTGGTGGTCCGTCTTT+TGG | 0.276468 | 7.1:+43266159 | MS.gene65091:CDS |
TCAGGTTACCCTGTGGAATA+TGG | 0.285489 | 7.1:+43270695 | MS.gene65091:intron |
ATAACTAATTTGTGATCTTC+AGG | 0.300971 | 7.1:-43270741 | None:intergenic |
CCATGGATTCATCAGTTTAT+CGG | 0.305168 | 7.1:+43267353 | MS.gene65091:CDS |
GTCCAAATTTGGTGAAGATA+TGG | 0.313890 | 7.1:+43271793 | MS.gene65091:CDS |
ACATTTCAACTCACAGTTAG+AGG | 0.314147 | 7.1:-43268270 | None:intergenic |
AAATTCTAATTATGGTGATA+TGG | 0.317057 | 7.1:+43268500 | MS.gene65091:CDS |
TGATCAACTAAGACCTGGTT+TGG | 0.320891 | 7.1:+43268371 | MS.gene65091:CDS |
TAGGTGAACCTGATTGCATT+TGG | 0.330287 | 7.1:-43268608 | None:intergenic |
CTATTTGCATCAATAAGATT+TGG | 0.330561 | 7.1:-43266945 | None:intergenic |
ATTAGTAGTTGGAGGGATTT+CGG | 0.336955 | 7.1:+43271905 | MS.gene65091:CDS |
GTCGCCAACTGAGATGAATT+TGG | 0.348706 | 7.1:-43270783 | None:intergenic |
TGAGAATGTGATTTCTGCTT+TGG | 0.349362 | 7.1:+43272488 | MS.gene65091:CDS |
AACGCAGAACCAATATCTTT+TGG | 0.350058 | 7.1:+43268422 | MS.gene65091:CDS |
TTCATGGCCAATGCACTTGC+TGG | 0.354921 | 7.1:-43266870 | None:intergenic |
TGTGGAATATGGACTCTTTA+CGG | 0.363207 | 7.1:+43270706 | MS.gene65091:CDS |
TGTCTCAGTCAGCTGGTTCA+TGG | 0.366187 | 7.1:+43267109 | MS.gene65091:intron |
CCACCCAGTCCAGGATGATT+AGG | 0.373675 | 7.1:-43266804 | None:intergenic |
CAGGATGATATAGATCGATT+TGG | 0.381220 | 7.1:+43269790 | MS.gene65091:intron |
CAAAGGATGGTCAATCTAAC+AGG | 0.384060 | 7.1:+43268565 | MS.gene65091:CDS |
CAACATACCTTCAGAGTTCA+TGG | 0.387665 | 7.1:-43266838 | None:intergenic |
GTGACAAATCTGTGCGGTTA+TGG | 0.388414 | 7.1:+43270814 | MS.gene65091:CDS |
TTGGCTGAGTGTGCTGCTAC+TGG | 0.392095 | 7.1:+43272507 | MS.gene65091:CDS |
TGCGTTGTTAAATTAGGCTT+CGG | 0.401986 | 7.1:-43268405 | None:intergenic |
AGGTGAACCTGATTGCATTT+GGG | 0.402536 | 7.1:-43268607 | None:intergenic |
GCTATATTCTTGAACACAAT+AGG | 0.403277 | 7.1:-43270989 | None:intergenic |
TGTGTTGATGACGGTGAATT+AGG | 0.403713 | 7.1:-43269400 | None:intergenic |
CAAATATTGTTCACCGGCTC+AGG | 0.410939 | 7.1:-43271735 | None:intergenic |
CAGTGCTGGAGAAGACAAAA+AGG | 0.412474 | 7.1:+43270099 | MS.gene65091:CDS |
ATGAACTCTGAAGGTATGTT+GGG | 0.414053 | 7.1:+43266840 | MS.gene65091:CDS |
GTTTCCAGTACCAGTGCTAT+TGG | 0.416797 | 7.1:-43269362 | None:intergenic |
GTTCAGGAGCTCAACTCTAC+TGG | 0.418673 | 7.1:+43271837 | MS.gene65091:CDS |
GTCAGTATGAAGCCAACTTT+GGG | 0.420214 | 7.1:+43265663 | None:intergenic |
CTCGTGTACCCGTGTATCTA+AGG | 0.424307 | 7.1:+43271119 | MS.gene65091:CDS |
ATTTCCTCCCAAATGCAATC+AGG | 0.425797 | 7.1:+43268600 | MS.gene65091:CDS |
GGAGATGGTGGAAATCTCTA+TGG | 0.430122 | 7.1:+43269865 | MS.gene65091:CDS |
TGTCAGTATGAAGCCAACTT+TGG | 0.431563 | 7.1:+43265662 | None:intergenic |
GACCTCAGGAGAATGCGTTC+AGG | 0.436546 | 7.1:+43271821 | MS.gene65091:CDS |
GGGTCAAGCTCAAAGTAATT+GGG | 0.439675 | 7.1:+43265683 | MS.gene65091:CDS |
GTGATAATGAAAATGAAATT+CGG | 0.440447 | 7.1:+43271076 | MS.gene65091:CDS |
ACTAATAAAGTTGCATAGCT+TGG | 0.440621 | 7.1:-43271888 | None:intergenic |
TCCTGCATCATTTGATAGAA+AGG | 0.441149 | 7.1:-43269845 | None:intergenic |
TATGCAACTTTATTAGTAGT+TGG | 0.442564 | 7.1:+43271894 | MS.gene65091:CDS |
AGCCGGTGAACAATATTTGT+TGG | 0.446057 | 7.1:+43271739 | MS.gene65091:CDS |
TTTGGCATCACAACAACAAC+AGG | 0.447254 | 7.1:+43268440 | MS.gene65091:CDS |
AATGAAACACCCTCATTCAA+TGG | 0.448834 | 7.1:+43266908 | MS.gene65091:CDS |
TCTTCTTAGGGTGGAAATCA+AGG | 0.451351 | 7.1:-43271035 | None:intergenic |
GGAAAGTTGCTTGCCAGTGC+TGG | 0.454974 | 7.1:+43270085 | MS.gene65091:CDS |
GTGAGGTTTCAGCCTGGATC+AGG | 0.455249 | 7.1:+43271238 | MS.gene65091:CDS |
GCCGGTGAACAATATTTGTT+GGG | 0.455398 | 7.1:+43271740 | MS.gene65091:CDS |
GTTAGAGGCCACCCCTTCAA+TGG | 0.455509 | 7.1:-43268255 | None:intergenic |
GTGGAAATCAAGGGACATAA+TGG | 0.456387 | 7.1:-43271025 | None:intergenic |
TGACAAATCTGTGCGGTTAT+GGG | 0.458834 | 7.1:+43270815 | MS.gene65091:CDS |
GAGATGAATTTGGTCTAAAA+CGG | 0.460751 | 7.1:-43270773 | None:intergenic |
GCAAGCAACTGTCCTGATCC+AGG | 0.471944 | 7.1:-43271250 | None:intergenic |
GATCAACTAAGACCTGGTTT+GGG | 0.472897 | 7.1:+43268372 | MS.gene65091:CDS |
TATCTTTCAGGACTAAATCA+AGG | 0.477203 | 7.1:+43268219 | MS.gene65091:intron |
GTTGTGATGCCAAAAGATAT+TGG | 0.477440 | 7.1:-43268431 | None:intergenic |
GCTGCCAATAGCACTGGTAC+TGG | 0.478935 | 7.1:+43269358 | MS.gene65091:CDS |
GCAACTTTATTAGTAGTTGG+AGG | 0.479170 | 7.1:+43271897 | MS.gene65091:CDS |
TGCGGTATTGCAGCAAATGC+AGG | 0.483221 | 7.1:+43267150 | MS.gene65091:CDS |
AATATTTGTTGGGATACTAC+TGG | 0.484000 | 7.1:+43271750 | MS.gene65091:CDS |
CTTTGAGCTTGACCCAAAGT+TGG | 0.484960 | 7.1:-43265675 | None:intergenic |
TAGACCAAATTCATCTCAGT+TGG | 0.486643 | 7.1:+43270779 | MS.gene65091:CDS |
CCGATAAACTGATGAATCCA+TGG | 0.487131 | 7.1:-43267353 | None:intergenic |
GTCCTTGGAGCTGTGGAACA+TGG | 0.490801 | 7.1:+43272434 | MS.gene65091:intron |
CATGAACTCTGAAGGTATGT+TGG | 0.492726 | 7.1:+43266839 | MS.gene65091:CDS |
GCAGCAGCATCAACTGCAGC+AGG | 0.494418 | 7.1:+43269204 | MS.gene65091:CDS |
AGATCCTAATCATCCTGGAC+TGG | 0.494987 | 7.1:+43266800 | MS.gene65091:CDS |
GGTCAATCTAACAGGAATGA+TGG | 0.498321 | 7.1:+43268573 | MS.gene65091:CDS |
CAACTTTATTAGTAGTTGGA+GGG | 0.501616 | 7.1:+43271898 | MS.gene65091:CDS |
TCTTATTGATGCAAATAGAA+TGG | 0.502350 | 7.1:+43266950 | MS.gene65091:CDS |
GAAATCACATTCTCATGTGC+AGG | 0.506120 | 7.1:-43272480 | None:intergenic |
CTGGAGGATTTCTGTTTGAG+TGG | 0.509340 | 7.1:+43266144 | MS.gene65091:CDS |
AAATCAGCAACAAGTCATCA+AGG | 0.513351 | 7.1:+43266981 | MS.gene65091:CDS |
AAATCTGGGTTAGGCAGTGC+AGG | 0.515833 | 7.1:+43267394 | MS.gene65091:CDS |
TATTCTTGAACACAATAGGT+TGG | 0.516797 | 7.1:-43270985 | None:intergenic |
ACAGGTCTTGGCACAGGCTC+AGG | 0.517377 | 7.1:+43268458 | MS.gene65091:CDS |
GGATACTACTGGAGATATGC+TGG | 0.518775 | 7.1:+43271761 | MS.gene65091:CDS |
ACAGAAGCAACAGGAGGACT+TGG | 0.519265 | 7.1:+43269502 | MS.gene65091:CDS |
ATGTATGGTACAGAAGCAAC+AGG | 0.522786 | 7.1:+43269493 | MS.gene65091:CDS |
GCAGCCACCAGCAAGTGCAT+TGG | 0.523196 | 7.1:+43266863 | MS.gene65091:CDS |
CATGGGAAAATTCTTTGGAC+TGG | 0.526682 | 7.1:-43267335 | None:intergenic |
TTCAAAGAACCACCCAGTCC+AGG | 0.526740 | 7.1:-43266813 | None:intergenic |
CACCATAATTAGAATTTCCA+AGG | 0.530895 | 7.1:-43268494 | None:intergenic |
ATCACAACAACAACAGGTCT+TGG | 0.532144 | 7.1:+43268446 | MS.gene65091:CDS |
TCCTTTCTATCAAATGATGC+AGG | 0.532417 | 7.1:+43269844 | MS.gene65091:CDS |
AGCTGGTTCATGGTAATTCA+GGG | 0.532733 | 7.1:+43267119 | MS.gene65091:CDS |
ATGGCCAATGCACTTGCTGG+TGG | 0.533520 | 7.1:-43266867 | None:intergenic |
AGTTACAAGTCTTCCATTGA+AGG | 0.537705 | 7.1:+43268242 | MS.gene65091:CDS |
CAGGCACAACAAAACAGCCT+TGG | 0.542631 | 7.1:+43268477 | MS.gene65091:CDS |
CAAAAGAGCATGATGATGTA+TGG | 0.542686 | 7.1:+43269478 | MS.gene65091:CDS |
CTATCAAATGATGCAGGAGA+TGG | 0.543994 | 7.1:+43269850 | MS.gene65091:CDS |
CGAAGAGATCCTAATCATCC+TGG | 0.545254 | 7.1:+43266795 | MS.gene65091:CDS |
GAGACAATGATTGTTGTGAC+TGG | 0.545286 | 7.1:-43269165 | None:intergenic |
GATCCTAATCATCCTGGACT+GGG | 0.546709 | 7.1:+43266801 | MS.gene65091:CDS |
ACATCTGAATCCATTGAATG+AGG | 0.547319 | 7.1:-43266918 | None:intergenic |
ATAGATCGATTTGGAGATGT+TGG | 0.547428 | 7.1:+43269799 | MS.gene65091:CDS |
AACATACCTTCAGAGTTCAT+GGG | 0.549284 | 7.1:-43266837 | None:intergenic |
TTCAGGAGCTCAACTCTACT+GGG | 0.552222 | 7.1:+43271838 | MS.gene65091:CDS |
GTGTGCAGTCCTTGGAGCTG+TGG | 0.553456 | 7.1:+43272427 | MS.gene65091:intron |
TCTGGAGCTGCCAATAGCAC+TGG | 0.557212 | 7.1:+43269352 | MS.gene65091:CDS |
TGAGTGTGCTGCTACTGGAA+TGG | 0.557700 | 7.1:+43272512 | MS.gene65091:CDS |
AAGATATGGAATTTGACCTC+AGG | 0.557728 | 7.1:+43271807 | MS.gene65091:CDS |
CTTTACAGAGTTGTCACGAC+TGG | 0.558560 | 7.1:-43272544 | None:intergenic |
CGATAAACTGATGAATCCAT+GGG | 0.559912 | 7.1:-43267352 | None:intergenic |
GTTACAAGTCTTCCATTGAA+GGG | 0.560570 | 7.1:+43268243 | MS.gene65091:CDS |
TTACAATCGAAATCTGGGTT+AGG | 0.560892 | 7.1:+43267385 | MS.gene65091:CDS |
CAAGTCTTCCATTGAAGGGG+TGG | 0.561593 | 7.1:+43268247 | MS.gene65091:CDS |
TTGAACCCCATGAACTCTGA+AGG | 0.565456 | 7.1:+43266831 | MS.gene65091:CDS |
AAAAGTGACAAGAAGTAACT+TGG | 0.565623 | 7.1:-43270054 | None:intergenic |
TTTGCAGGGTCATCCTGAGC+CGG | 0.566190 | 7.1:+43271722 | MS.gene65091:intron |
GTAAAGAGTCCATATTCCAC+AGG | 0.566610 | 7.1:-43270704 | None:intergenic |
TGTTGTCATACAGATGAAGA+TGG | 0.570938 | 7.1:+43269141 | MS.gene65091:intron |
GAGGATTTCTGTTTGAGTGG+TGG | 0.572454 | 7.1:+43266147 | MS.gene65091:CDS |
AGAGTTGTCACGACTGGCAG+AGG | 0.573691 | 7.1:-43272538 | None:intergenic |
CATCTGAATCCATTGAATGA+GGG | 0.576618 | 7.1:-43266917 | None:intergenic |
TCCCAACAAATATTGTTCAC+CGG | 0.579006 | 7.1:-43271741 | None:intergenic |
TTGATAGCAATTGATGCACC+TGG | 0.581055 | 7.1:+43266125 | MS.gene65091:intron |
TCAAATGATGCAGGAGATGG+TGG | 0.583514 | 7.1:+43269853 | MS.gene65091:CDS |
CAGACAAATTTACTCACTCC+AGG | 0.587469 | 7.1:+43271318 | MS.gene65091:CDS |
ACTGGTACTGGAAACACAGC+TGG | 0.587738 | 7.1:+43269370 | MS.gene65091:CDS |
CTTCTTAGGGTGGAAATCAA+GGG | 0.588390 | 7.1:-43271034 | None:intergenic |
CCGTCATCAACACACACACC+TGG | 0.589445 | 7.1:+43269409 | MS.gene65091:CDS |
GTGACAACTCTGTAAAGTTG+TGG | 0.593245 | 7.1:+43272550 | MS.gene65091:CDS |
GATGAATATATCCCAAAAGA+CGG | 0.596758 | 7.1:-43266171 | None:intergenic |
TATTGCAGCAAATGCAGGCA+CGG | 0.597994 | 7.1:+43267155 | MS.gene65091:CDS |
AATGCAATCAGGTTCACCTA+AGG | 0.600370 | 7.1:+43268611 | MS.gene65091:CDS |
ATCAAAGGAGAAGTTAACAT+TGG | 0.600466 | 7.1:+43267310 | MS.gene65091:CDS |
AGCCATGTTCCACAGCTCCA+AGG | 0.601941 | 7.1:-43272436 | None:intergenic |
GCAAAAGTGAGGTTTCAGCC+TGG | 0.602949 | 7.1:+43271232 | MS.gene65091:CDS |
CACTCAAACAGAAATCCTCC+AGG | 0.604315 | 7.1:-43266143 | None:intergenic |
TATGCAGCTAAATTCAGCAA+AGG | 0.604600 | 7.1:-43270020 | None:intergenic |
TGAACCTGATTGCATTTGGG+AGG | 0.613490 | 7.1:-43268604 | None:intergenic |
TCGAGGTAGCTTAAATGCAA+AGG | 0.613666 | 7.1:+43268548 | MS.gene65091:CDS |
CTTAGATACACGGGTACACG+AGG | 0.614445 | 7.1:-43271118 | None:intergenic |
ACAACAACAGGTCTTGGCAC+AGG | 0.616147 | 7.1:+43268452 | MS.gene65091:CDS |
TTACAAGTCTTCCATTGAAG+GGG | 0.616668 | 7.1:+43268244 | MS.gene65091:CDS |
GCTGTATTCAATACGTCACC+AGG | 0.618701 | 7.1:-43269427 | None:intergenic |
TTGACCAACCTTAGATACAC+GGG | 0.620122 | 7.1:-43271127 | None:intergenic |
AATCAGCAACAAGTCATCAA+GGG | 0.625746 | 7.1:+43266982 | MS.gene65091:CDS |
CTCCTGAACGCATTCTCCTG+AGG | 0.626633 | 7.1:-43271823 | None:intergenic |
TTTGACCAACCTTAGATACA+CGG | 0.626725 | 7.1:-43271128 | None:intergenic |
CCTAATCATCCTGGACTGGG+TGG | 0.629932 | 7.1:+43266804 | MS.gene65091:CDS |
CCAGGTGTGTGTGTTGATGA+CGG | 0.630222 | 7.1:-43269409 | None:intergenic |
TGGTGCTTTAGATGATAATG+TGG | 0.631026 | 7.1:+43269819 | MS.gene65091:CDS |
GGAACTTGTACACCCAAACC+AGG | 0.632322 | 7.1:-43268384 | None:intergenic |
GGTAGCTTAAATGCAAAGGA+TGG | 0.633429 | 7.1:+43268552 | MS.gene65091:CDS |
AAGGTTTCAACTGATCCAGT+AGG | 0.634552 | 7.1:+43265909 | MS.gene65091:CDS |
AGGGAGGTAATGCAAAAGTG+AGG | 0.639313 | 7.1:+43271221 | MS.gene65091:intron |
CCGCACAGATTTGTCACATG+AGG | 0.645521 | 7.1:-43270808 | None:intergenic |
AGACAATGATTGTTGTGACT+GGG | 0.645930 | 7.1:-43269164 | None:intergenic |
ACATACCTTCAGAGTTCATG+GGG | 0.646193 | 7.1:-43266836 | None:intergenic |
TAATTTGTGATCTTCAGGAG+TGG | 0.651459 | 7.1:-43270736 | None:intergenic |
GGAATTGATCAACTAAGACC+TGG | 0.651794 | 7.1:+43268366 | MS.gene65091:CDS |
AATAAAACAAAGCCCAGCTG+AGG | 0.653660 | 7.1:+43269891 | MS.gene65091:CDS |
AGACTTTCTGGTCTTCCTCG+AGG | 0.655968 | 7.1:+43268531 | MS.gene65091:CDS |
AATTTAGCTGCATAAGAACA+AGG | 0.658156 | 7.1:+43270029 | MS.gene65091:CDS |
AACAAATGAGAAGCATTCTG+AGG | 0.662829 | 7.1:+43266199 | MS.gene65091:CDS |
GGCTGCTGCATCTTACATTG+AGG | 0.668511 | 7.1:+43266220 | MS.gene65091:CDS |
TTGGTAGACACAGCAAACAA+AGG | 0.669557 | 7.1:+43266710 | MS.gene65091:intron |
TGAACTCTGAAGGTATGTTG+GGG | 0.670256 | 7.1:+43266841 | MS.gene65091:CDS |
ATAGCAATTGATGCACCTGG+AGG | 0.686315 | 7.1:+43266128 | MS.gene65091:intron |
TATTGTGTTCAAGAATATAG+CGG | 0.694108 | 7.1:+43270991 | MS.gene65091:CDS |
TAAAGAGTCCATATTCCACA+GGG | 0.698758 | 7.1:-43270703 | None:intergenic |
GGAAGACCAGAAAGTCTGCG+TGG | 0.711585 | 7.1:-43268525 | None:intergenic |
TAATTCAGGGAATATGTCTG+CGG | 0.721386 | 7.1:+43267132 | MS.gene65091:CDS |
TTTGCATTTAAGCTACCTCG+AGG | 0.727027 | 7.1:-43268546 | None:intergenic |
GCATGTATCAGGTTACCCTG+TGG | 0.729250 | 7.1:+43270688 | MS.gene65091:intron |
TATGGTACAGAAGCAACAGG+AGG | 0.736146 | 7.1:+43269496 | MS.gene65091:CDS |
GATGACGGTGAATTAGGTGA+AGG | 0.756690 | 7.1:-43269394 | None:intergenic |
CCTCATGTGACAAATCTGTG+CGG | 0.774368 | 7.1:+43270808 | MS.gene65091:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 43265669 | 43272578 | 43265669 | ID=MS.gene65091 |
chr7.1 | mRNA | 43265669 | 43272578 | 43265669 | ID=MS.gene65091.t1;Parent=MS.gene65091 |
chr7.1 | exon | 43265669 | 43265718 | 43265669 | ID=MS.gene65091.t1.exon1;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43265669 | 43265718 | 43265669 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43265833 | 43265930 | 43265833 | ID=MS.gene65091.t1.exon2;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43265833 | 43265930 | 43265833 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43266132 | 43266241 | 43266132 | ID=MS.gene65091.t1.exon3;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43266132 | 43266241 | 43266132 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43266717 | 43267003 | 43266717 | ID=MS.gene65091.t1.exon4;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43266717 | 43267003 | 43266717 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43267117 | 43267192 | 43267117 | ID=MS.gene65091.t1.exon5;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43267117 | 43267192 | 43267117 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43267307 | 43267415 | 43267307 | ID=MS.gene65091.t1.exon6;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43267307 | 43267415 | 43267307 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43268229 | 43268278 | 43268229 | ID=MS.gene65091.t1.exon7;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43268229 | 43268278 | 43268229 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43268366 | 43268632 | 43268366 | ID=MS.gene65091.t1.exon8;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43268366 | 43268632 | 43268366 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43269154 | 43269225 | 43269154 | ID=MS.gene65091.t1.exon9;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43269154 | 43269225 | 43269154 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43269322 | 43269543 | 43269322 | ID=MS.gene65091.t1.exon10;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43269322 | 43269543 | 43269322 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43269793 | 43269934 | 43269793 | ID=MS.gene65091.t1.exon11;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43269793 | 43269934 | 43269793 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43270014 | 43270120 | 43270014 | ID=MS.gene65091.t1.exon12;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43270014 | 43270120 | 43270014 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43270699 | 43270848 | 43270699 | ID=MS.gene65091.t1.exon13;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43270699 | 43270848 | 43270699 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43270985 | 43271140 | 43270985 | ID=MS.gene65091.t1.exon14;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43270985 | 43271140 | 43270985 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43271223 | 43271339 | 43271223 | ID=MS.gene65091.t1.exon15;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43271223 | 43271339 | 43271223 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43271729 | 43271926 | 43271729 | ID=MS.gene65091.t1.exon16;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43271729 | 43271926 | 43271729 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
chr7.1 | exon | 43272435 | 43272578 | 43272435 | ID=MS.gene65091.t1.exon17;Parent=MS.gene65091.t1 |
chr7.1 | CDS | 43272435 | 43272578 | 43272435 | ID=cds.MS.gene65091.t1;Parent=MS.gene65091.t1 |
Gene Sequence |
Protein sequence |