Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65141.t1 | RHN75196.1 | 91.8 | 61 | 5 | 0 | 9 | 69 | 498 | 558 | 8.90E-19 | 104 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65141.t1 | A0A072VBM0 | 91.8 | 61 | 5 | 0 | 9 | 69 | 498 | 558 | 6.4e-19 | 104.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene65141 | 0.818515 | 1.88E-52 | -1.69E-46 |
| MS.gene049976 | MS.gene65141 | 0.806535 | 7.85E-50 | -1.69E-46 |
| MS.gene049977 | MS.gene65141 | 0.848535 | 5.76E-60 | -1.69E-46 |
| MS.gene052463 | MS.gene65141 | 0.803605 | 3.22E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene65141 | 0.816344 | 5.80E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene65141 | 0.802119 | 6.52E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene65141 | 0.802553 | 5.31E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene65141 | 0.838041 | 3.64E-57 | -1.69E-46 |
| MS.gene057155 | MS.gene65141 | 0.807625 | 4.61E-50 | -1.69E-46 |
| MS.gene057611 | MS.gene65141 | 0.811646 | 6.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65141.t1 | MTR_2g081100 | 90.909 | 66 | 6 | 0 | 9 | 74 | 498 | 563 | 3.22e-31 | 120 |
| MS.gene65141.t1 | MTR_2g081100 | 90.909 | 66 | 6 | 0 | 9 | 74 | 498 | 563 | 4.08e-31 | 120 |
| MS.gene65141.t1 | MTR_0091s0080 | 45.455 | 99 | 54 | 0 | 93 | 191 | 249 | 347 | 7.89e-26 | 104 |
| MS.gene65141.t1 | MTR_1g052720 | 38.144 | 97 | 60 | 0 | 100 | 196 | 54 | 150 | 1.38e-18 | 82.4 |
| MS.gene65141.t1 | MTR_0246s0040 | 37.755 | 98 | 61 | 0 | 94 | 191 | 77 | 174 | 3.80e-16 | 75.9 |
| MS.gene65141.t1 | MTR_8g064930 | 57.143 | 49 | 21 | 0 | 94 | 142 | 2 | 50 | 2.85e-15 | 67.8 |
| MS.gene65141.t1 | MTR_6g465600 | 35.870 | 92 | 59 | 0 | 100 | 191 | 57 | 148 | 3.48e-15 | 73.2 |
| MS.gene65141.t1 | MTR_0091s0090 | 45.902 | 61 | 33 | 0 | 131 | 191 | 4 | 64 | 2.41e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAATGACATTGATATTC+TGG | 0.189504 | 7.1:-42224193 | None:intergenic |
| ATTAAGGCTTGGTTTCATTA+AGG | 0.279842 | 7.1:+42222540 | MS.gene65141:CDS |
| CCAACGTTCATTGATTATAA+TGG | 0.304555 | 7.1:+42224398 | MS.gene65141:CDS |
| CCAGAATATCAATGTCATTC+AGG | 0.310628 | 7.1:+42224193 | MS.gene65141:CDS |
| AAGTCTCTGGTATGTAAAAT+TGG | 0.342123 | 7.1:+42223367 | MS.gene65141:CDS |
| AAAGCCAACAAATGACATTA+AGG | 0.345467 | 7.1:+42222524 | None:intergenic |
| TCAATGAACGTTGGTGTAGC+TGG | 0.388479 | 7.1:-42224389 | None:intergenic |
| TCCTGTTTGTTATAGCCATA+AGG | 0.397282 | 7.1:-42224331 | None:intergenic |
| TCTTGGTGCTCAGTCCTTTG+AGG | 0.398508 | 7.1:+42222701 | MS.gene65141:CDS |
| ACAAAATAGAGCTGGGTGCC+TGG | 0.399485 | 7.1:+42224276 | MS.gene65141:CDS |
| ATGACATTGATATTCTGGTT+TGG | 0.423705 | 7.1:-42224188 | None:intergenic |
| TGGCTATAACAAACAGGAAA+GGG | 0.435466 | 7.1:+42224336 | MS.gene65141:CDS |
| AGTGAATTGTGAAGATTCCT+TGG | 0.446636 | 7.1:-42222679 | None:intergenic |
| GTATCCGAATCTACTCCTTA+TGG | 0.451663 | 7.1:+42224316 | MS.gene65141:CDS |
| CCTTTCCGACCTCTAGTGCT+TGG | 0.456216 | 7.1:-42222941 | None:intergenic |
| CGCATATGTCAGGCAAATCC+AGG | 0.467174 | 7.1:-42224294 | None:intergenic |
| GAATCTTCACAATTCACTCT+TGG | 0.470201 | 7.1:+42222684 | MS.gene65141:CDS |
| TCCTTATGGCTATAACAAAC+AGG | 0.471089 | 7.1:+42224330 | MS.gene65141:CDS |
| TTCGTAGAACAAGGCTAGAA+TGG | 0.475028 | 7.1:+42224106 | MS.gene65141:intron |
| TGCAGCTGGAGCTGATAGTC+CGG | 0.486818 | 7.1:+42222871 | MS.gene65141:CDS |
| GTGTCAGCATGCATTTCCCT+TGG | 0.489277 | 7.1:+42224437 | MS.gene65141:CDS |
| TTTGTTCTAGGAACGTGTTA+AGG | 0.492658 | 7.1:+42222641 | MS.gene65141:intron |
| TCATCATCGCTAAAGGAAAC+CGG | 0.493633 | 7.1:-42222890 | None:intergenic |
| AGAGTTCTACAAAATAGAGC+TGG | 0.500119 | 7.1:+42224268 | MS.gene65141:CDS |
| CAACAAATGACATTAAGGCT+TGG | 0.502037 | 7.1:+42222529 | None:intergenic |
| GGCATCTTCATCATCGCTAA+AGG | 0.504845 | 7.1:-42222897 | None:intergenic |
| TTTCAAGGCAGAAGTGCAGC+TGG | 0.505124 | 7.1:+42222857 | MS.gene65141:CDS |
| ATTTGCTGGGTTTACCTCAA+AGG | 0.510958 | 7.1:-42222715 | None:intergenic |
| ACATTCTTTGACAAAACAGT+TGG | 0.514565 | 7.1:-42224129 | None:intergenic |
| TGGAATGGAATTTGTTGGGT+AGG | 0.516364 | 7.1:-42224369 | None:intergenic |
| GATTCGGATACGCATATGTC+AGG | 0.519976 | 7.1:-42224304 | None:intergenic |
| TGTGCAAGTACACAAGTCTC+TGG | 0.520349 | 7.1:+42223354 | MS.gene65141:CDS |
| ATAGCCATAAGGAGTAGATT+CGG | 0.520589 | 7.1:-42224320 | None:intergenic |
| ATGTAAAATTGGAGGTGAGT+GGG | 0.523440 | 7.1:+42223378 | MS.gene65141:CDS |
| TAGCTGGAATGGAATTTGTT+GGG | 0.523834 | 7.1:-42224373 | None:intergenic |
| TGTAAAATTGGAGGTGAGTG+GGG | 0.528779 | 7.1:+42223379 | MS.gene65141:CDS |
| AGTTAGCATACTATCTTCCA+AGG | 0.534470 | 7.1:-42224454 | None:intergenic |
| GTAGCTGGAATGGAATTTGT+TGG | 0.537737 | 7.1:-42224374 | None:intergenic |
| GAACGTTGGTGTAGCTGGAA+TGG | 0.542196 | 7.1:-42224384 | None:intergenic |
| GGAGCGATCTACGCGCTCCA+AGG | 0.554334 | 7.1:+42222662 | MS.gene65141:CDS |
| ATGGCTATAACAAACAGGAA+AGG | 0.562348 | 7.1:+42224335 | MS.gene65141:CDS |
| TTATAATGGTGAAACTAGCT+TGG | 0.578050 | 7.1:+42224412 | MS.gene65141:CDS |
| TCTCTGGTATGTAAAATTGG+AGG | 0.581652 | 7.1:+42223370 | MS.gene65141:CDS |
| AGCTCAAAACCAAGCACTAG+AGG | 0.589923 | 7.1:+42222932 | MS.gene65141:CDS |
| CCATTATAATCAATGAACGT+TGG | 0.604275 | 7.1:-42224398 | None:intergenic |
| CCAAGCACTAGAGGTCGGAA+AGG | 0.605138 | 7.1:+42222941 | MS.gene65141:CDS |
| GAGTTCTACAAAATAGAGCT+GGG | 0.606882 | 7.1:+42224269 | MS.gene65141:CDS |
| GGGTGCTTTGCAAAGCACGC+AGG | 0.616754 | 7.1:+42223399 | MS.gene65141:CDS |
| GGCTATAACAAACAGGAAAG+GGG | 0.620514 | 7.1:+42224337 | MS.gene65141:CDS |
| TATGTAAAATTGGAGGTGAG+TGG | 0.623493 | 7.1:+42223377 | MS.gene65141:CDS |
| TAATGGTGAAACTAGCTTGG+TGG | 0.627473 | 7.1:+42224415 | MS.gene65141:CDS |
| CAAAACCAAGCACTAGAGGT+CGG | 0.637760 | 7.1:+42222936 | MS.gene65141:CDS |
| GTTAGCATACTATCTTCCAA+GGG | 0.666617 | 7.1:-42224453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTCAATTTTTTATTATTTTT+TGG | + | chr7.1:42223607-42223626 | MS.gene65141:intron | 10.0% |
| !!! | TTTATTTGTTATTACTATAT+AGG | + | chr7.1:42224054-42224073 | MS.gene65141:intron | 10.0% |
| !! | AAATTACATTTATTACTTGA+TGG | - | chr7.1:42223959-42223978 | None:intergenic | 15.0% |
| !! | AATTACATTTATTACTTGAT+GGG | - | chr7.1:42223958-42223977 | None:intergenic | 15.0% |
| !! | TAATTGAAAGAAAGAAAAAA+AGG | - | chr7.1:42223070-42223089 | None:intergenic | 15.0% |
| !! | AATGTATAATATCATTTGCT+GGG | - | chr7.1:42222731-42222750 | None:intergenic | 20.0% |
| !! | TGAAAATTATGTAAAAAGCA+GGG | + | chr7.1:42222770-42222789 | MS.gene65141:intron | 20.0% |
| !! | TTGAAAATTATGTAAAAAGC+AGG | + | chr7.1:42222769-42222788 | MS.gene65141:intron | 20.0% |
| !!! | TGTAATTTGCTTATATGTTT+TGG | + | chr7.1:42223971-42223990 | MS.gene65141:intron | 20.0% |
| !!! | TTGTGATCAGAATTATTTTA+TGG | + | chr7.1:42222580-42222599 | MS.gene65141:intron | 20.0% |
| ! | AAGAAATAAGCTAAGAATGA+AGG | - | chr7.1:42222822-42222841 | None:intergenic | 25.0% |
| ! | AGATACACATGAAAAAATGA+GGG | - | chr7.1:42224009-42224028 | None:intergenic | 25.0% |
| ! | ATCATCATCATAACTGTTAA+TGG | + | chr7.1:42223204-42223223 | MS.gene65141:intron | 25.0% |
| ! | CAATGTATAATATCATTTGC+TGG | - | chr7.1:42222732-42222751 | None:intergenic | 25.0% |
| ! | TAGATACACATGAAAAAATG+AGG | - | chr7.1:42224010-42224029 | None:intergenic | 25.0% |
| ! | TCATGTGTATCTATTTAACT+TGG | + | chr7.1:42224017-42224036 | MS.gene65141:intron | 25.0% |
| ! | TTTATGTCTTAAGCTAGTAA+AGG | - | chr7.1:42223723-42223742 | None:intergenic | 25.0% |
| !! | ATCACTTTCATTGATTATTG+TGG | + | chr7.1:42223304-42223323 | MS.gene65141:intron | 25.0% |
| !! | GAAGTCTTCTAAATTAGTTT+AGG | + | chr7.1:42223824-42223843 | MS.gene65141:intron | 25.0% |
| !! | TTACTAGCTTAAGACATAAA+TGG | + | chr7.1:42223723-42223742 | MS.gene65141:intron | 25.0% |
| !! | TTATTTCTTTATTCCGTACA+GGG | + | chr7.1:42222833-42222852 | MS.gene65141:intron | 25.0% |
| !!! | ATTTTTTGGTTCTGATATGT+TGG | + | chr7.1:42223621-42223640 | MS.gene65141:intron | 25.0% |
| !!! | GTATCTATTTAACTTGGTTT+TGG | + | chr7.1:42224023-42224042 | MS.gene65141:intron | 25.0% |
| AAGAAAGAAAAAAAGGTGAG+AGG | - | chr7.1:42223063-42223082 | None:intergenic | 30.0% | |
| AAGTCTCTGGTATGTAAAAT+TGG | + | chr7.1:42223367-42223386 | MS.gene65141:CDS | 30.0% | |
| ACATTCTTTGACAAAACAGT+TGG | - | chr7.1:42224132-42224151 | None:intergenic | 30.0% | |
| ACCTTAATATAAACCAAGAG+TGG | - | chr7.1:42223923-42223942 | None:intergenic | 30.0% | |
| AGAAACTAACAAATCTGCAA+AGG | - | chr7.1:42223030-42223049 | None:intergenic | 30.0% | |
| CCATTATAATCAATGAACGT+TGG | - | chr7.1:42224401-42224420 | None:intergenic | 30.0% | |
| CTGTGAATAACCATATGATT+GGG | + | chr7.1:42223531-42223550 | MS.gene65141:intron | 30.0% | |
| GTATATCATTTCGTAGAACA+AGG | + | chr7.1:42224097-42224116 | MS.gene65141:intron | 30.0% | |
| TATAAACCAAGAGTGGAATT+TGG | - | chr7.1:42223916-42223935 | None:intergenic | 30.0% | |
| TCCACTCTTGGTTTATATTA+AGG | + | chr7.1:42223919-42223938 | MS.gene65141:intron | 30.0% | |
| TCTGTGAATAACCATATGAT+TGG | + | chr7.1:42223530-42223549 | MS.gene65141:intron | 30.0% | |
| TTATAATGGTGAAACTAGCT+TGG | + | chr7.1:42224412-42224431 | MS.gene65141:CDS | 30.0% | |
| ! | AAAACGAGAAGGTCTATTTT+CGG | + | chr7.1:42224225-42224244 | MS.gene65141:CDS | 30.0% |
| ! | AACTGTTTTGTCAAAGAATG+TGG | + | chr7.1:42224131-42224150 | MS.gene65141:CDS | 30.0% |
| ! | ATCGTTCTTCTTTTTGTTCT+AGG | + | chr7.1:42222629-42222648 | MS.gene65141:intron | 30.0% |
| ! | ATGACACTAATATCCTTTTC+CGG | + | chr7.1:42223653-42223672 | MS.gene65141:intron | 30.0% |
| ! | ATGACATTGATATTCTGGTT+TGG | - | chr7.1:42224191-42224210 | None:intergenic | 30.0% |
| ! | ATTAAGGCTTGGTTTCATTA+AGG | + | chr7.1:42222540-42222559 | MS.gene65141:CDS | 30.0% |
| ! | CCAACGTTCATTGATTATAA+TGG | + | chr7.1:42224398-42224417 | MS.gene65141:CDS | 30.0% |
| ! | CTTATTTCTTTATTCCGTAC+AGG | + | chr7.1:42222832-42222851 | MS.gene65141:intron | 30.0% |
| ! | TATGTAAAAAGCAGGGTTTT+GGG | + | chr7.1:42222777-42222796 | MS.gene65141:intron | 30.0% |
| ! | TTATGTAAAAAGCAGGGTTT+TGG | + | chr7.1:42222776-42222795 | MS.gene65141:intron | 30.0% |
| !! | TCTAATTCTTGCTGTTACTA+AGG | + | chr7.1:42223439-42223458 | MS.gene65141:intron | 30.0% |
| AGAATAGTATGATCAGTGAC+TGG | + | chr7.1:42222605-42222624 | MS.gene65141:intron | 35.0% | |
| AGAGAAGACTAATATCGTGA+TGG | - | chr7.1:42222991-42223010 | None:intergenic | 35.0% | |
| AGAGTTCTACAAAATAGAGC+TGG | + | chr7.1:42224268-42224287 | MS.gene65141:CDS | 35.0% | |
| AGTGAATTGTGAAGATTCCT+TGG | - | chr7.1:42222682-42222701 | None:intergenic | 35.0% | |
| ATAGCCATAAGGAGTAGATT+CGG | - | chr7.1:42224323-42224342 | None:intergenic | 35.0% | |
| ATGGCTATAACAAACAGGAA+AGG | + | chr7.1:42224335-42224354 | MS.gene65141:CDS | 35.0% | |
| ATGTAAAATTGGAGGTGAGT+GGG | + | chr7.1:42223378-42223397 | MS.gene65141:CDS | 35.0% | |
| ATTTATGAGCGTTATGAGAC+TGG | + | chr7.1:42223117-42223136 | MS.gene65141:intron | 35.0% | |
| CCAGAATATCAATGTCATTC+AGG | + | chr7.1:42224193-42224212 | MS.gene65141:CDS | 35.0% | |
| CCTGAATGACATTGATATTC+TGG | - | chr7.1:42224196-42224215 | None:intergenic | 35.0% | |
| GAATCTTCACAATTCACTCT+TGG | + | chr7.1:42222684-42222703 | MS.gene65141:CDS | 35.0% | |
| GAGTTCTACAAAATAGAGCT+GGG | + | chr7.1:42224269-42224288 | MS.gene65141:CDS | 35.0% | |
| TATGTAAAATTGGAGGTGAG+TGG | + | chr7.1:42223377-42223396 | MS.gene65141:CDS | 35.0% | |
| TCCTTATGGCTATAACAAAC+AGG | + | chr7.1:42224330-42224349 | MS.gene65141:CDS | 35.0% | |
| TCTCTGGTATGTAAAATTGG+AGG | + | chr7.1:42223370-42223389 | MS.gene65141:CDS | 35.0% | |
| TGGCTATAACAAACAGGAAA+GGG | + | chr7.1:42224336-42224355 | MS.gene65141:CDS | 35.0% | |
| ! | TAGCTGGAATGGAATTTGTT+GGG | - | chr7.1:42224376-42224395 | None:intergenic | 35.0% |
| !! | ATCTATCTGTGATTTGTTCG+TGG | + | chr7.1:42223479-42223498 | MS.gene65141:intron | 35.0% |
| !! | CACGATATTAGTCTTCTCTT+TGG | + | chr7.1:42222992-42223011 | MS.gene65141:intron | 35.0% |
| !! | GGTTGATAAGAAAAACGAGA+AGG | + | chr7.1:42224214-42224233 | MS.gene65141:CDS | 35.0% |
| !! | TCCTGTTTGTTATAGCCATA+AGG | - | chr7.1:42224334-42224353 | None:intergenic | 35.0% |
| !! | TTTGTTCTAGGAACGTGTTA+AGG | + | chr7.1:42222641-42222660 | MS.gene65141:intron | 35.0% |
| !!! | ATAGGCTAGCTTTTTTGACA+TGG | + | chr7.1:42224072-42224091 | MS.gene65141:intron | 35.0% |
| ACATGAAAAAATGAGGGTCG+AGG | - | chr7.1:42224003-42224022 | None:intergenic | 40.0% | |
| AGACTGGTGTACATCTATGA+TGG | + | chr7.1:42223133-42223152 | MS.gene65141:intron | 40.0% | |
| AGATACTCTCCATCATCACA+TGG | - | chr7.1:42223506-42223525 | None:intergenic | 40.0% | |
| CATGAAAAAATGAGGGTCGA+GGG | - | chr7.1:42224002-42224021 | None:intergenic | 40.0% | |
| GACTATCCAAATTCCACTCT+TGG | + | chr7.1:42223907-42223926 | MS.gene65141:intron | 40.0% | |
| GGCTATAACAAACAGGAAAG+GGG | + | chr7.1:42224337-42224356 | MS.gene65141:CDS | 40.0% | |
| GTAGCTGGAATGGAATTTGT+TGG | - | chr7.1:42224377-42224396 | None:intergenic | 40.0% | |
| GTATCCGAATCTACTCCTTA+TGG | + | chr7.1:42224316-42224335 | MS.gene65141:CDS | 40.0% | |
| TCAATATCACCACCAAGTTC+TGG | - | chr7.1:42223685-42223704 | None:intergenic | 40.0% | |
| TCATCATCGCTAAAGGAAAC+CGG | - | chr7.1:42222893-42222912 | None:intergenic | 40.0% | |
| TGTAAAATTGGAGGTGAGTG+GGG | + | chr7.1:42223379-42223398 | MS.gene65141:CDS | 40.0% | |
| TTCGTAGAACAAGGCTAGAA+TGG | + | chr7.1:42224106-42224125 | MS.gene65141:intron | 40.0% | |
| ! | ATTTGCTGGGTTTACCTCAA+AGG | - | chr7.1:42222718-42222737 | None:intergenic | 40.0% |
| ! | TAATGGTGAAACTAGCTTGG+TGG | + | chr7.1:42224415-42224434 | MS.gene65141:CDS | 40.0% |
| ! | TATTCCGTACAGGGTTTTCA+AGG | + | chr7.1:42222842-42222861 | MS.gene65141:intron | 40.0% |
| ! | TTTTGAGCTTGATGTTGGCA+TGG | - | chr7.1:42222921-42222940 | None:intergenic | 40.0% |
| !! | ACTTGGTGGTGATATTGACT+TGG | + | chr7.1:42223687-42223706 | MS.gene65141:intron | 40.0% |
| !! | TCTTGCTGTTACTAAGGAGA+GGG | + | chr7.1:42223445-42223464 | MS.gene65141:intron | 40.0% |
| !! | TGGAATGGAATTTGTTGGGT+AGG | - | chr7.1:42224372-42224391 | None:intergenic | 40.0% |
| !! | TTCTTGCTGTTACTAAGGAG+AGG | + | chr7.1:42223444-42223463 | MS.gene65141:intron | 40.0% |
| !!! | CTTGGTTTTGAGCTTGATGT+TGG | - | chr7.1:42222926-42222945 | None:intergenic | 40.0% |
| AGAGCAAGACAAAACCTTCC+CGG | - | chr7.1:42223580-42223599 | None:intergenic | 45.0% | |
| AGCTCAAAACCAAGCACTAG+AGG | + | chr7.1:42222932-42222951 | MS.gene65141:CDS | 45.0% | |
| CAAAACCAAGCACTAGAGGT+CGG | + | chr7.1:42222936-42222955 | MS.gene65141:CDS | 45.0% | |
| CTGAGGATACTGTGTTCTTC+CGG | + | chr7.1:42223558-42223577 | MS.gene65141:intron | 45.0% | |
| GATTCGGATACGCATATGTC+AGG | - | chr7.1:42224307-42224326 | None:intergenic | 45.0% | |
| GGCATCTTCATCATCGCTAA+AGG | - | chr7.1:42222900-42222919 | None:intergenic | 45.0% | |
| TCAATGAACGTTGGTGTAGC+TGG | - | chr7.1:42224392-42224411 | None:intergenic | 45.0% | |
| TCTGCCTTGAAAACCCTGTA+CGG | - | chr7.1:42222849-42222868 | None:intergenic | 45.0% | |
| TGAGGATACTGTGTTCTTCC+GGG | + | chr7.1:42223559-42223578 | MS.gene65141:intron | 45.0% | |
| TGTGCAAGTACACAAGTCTC+TGG | + | chr7.1:42223354-42223373 | MS.gene65141:CDS | 45.0% | |
| ! | AGGTCTATTTTCGGCATGGT+TGG | + | chr7.1:42224234-42224253 | MS.gene65141:CDS | 45.0% |
| ! | GAGAAGGTCTATTTTCGGCA+TGG | + | chr7.1:42224230-42224249 | MS.gene65141:CDS | 45.0% |
| ! | TTTTCACAGAAGCCTGACCA+TGG | - | chr7.1:42223259-42223278 | None:intergenic | 45.0% |
| !!! | TAAAAAGCAGGGTTTTGGGC+AGG | + | chr7.1:42222781-42222800 | MS.gene65141:intron | 45.0% |
| AAGCACGCAGGTTTGTCGAA+TGG | + | chr7.1:42223411-42223430 | MS.gene65141:intron | 50.0% | |
| ACAAAATAGAGCTGGGTGCC+TGG | + | chr7.1:42224276-42224295 | MS.gene65141:CDS | 50.0% | |
| CCATATGATTGGGCAAGCTG+AGG | + | chr7.1:42223541-42223560 | MS.gene65141:intron | 50.0% | |
| CCTCAGCTTGCCCAATCATA+TGG | - | chr7.1:42223544-42223563 | None:intergenic | 50.0% | |
| CGCATATGTCAGGCAAATCC+AGG | - | chr7.1:42224297-42224316 | None:intergenic | 50.0% | |
| GAACGTTGGTGTAGCTGGAA+TGG | - | chr7.1:42224387-42224406 | None:intergenic | 50.0% | |
| GATACTGTGTTCTTCCGGGA+AGG | + | chr7.1:42223563-42223582 | MS.gene65141:intron | 50.0% | |
| GTGTCAGCATGCATTTCCCT+TGG | + | chr7.1:42224437-42224456 | MS.gene65141:CDS | 50.0% | |
| GTTCGTGGACCATGTGATGA+TGG | + | chr7.1:42223494-42223513 | MS.gene65141:intron | 50.0% | |
| GTTCTGGTGCAAACCGGAAA+AGG | - | chr7.1:42223669-42223688 | None:intergenic | 50.0% | |
| ! | CACCAAGTTCTGGTGCAAAC+CGG | - | chr7.1:42223675-42223694 | None:intergenic | 50.0% |
| ! | TTCCGGTTTGCACCAGAACT+TGG | + | chr7.1:42223670-42223689 | MS.gene65141:intron | 50.0% |
| ! | TTTCAAGGCAGAAGTGCAGC+TGG | + | chr7.1:42222857-42222876 | MS.gene65141:CDS | 50.0% |
| !! | TCTTGGTGCTCAGTCCTTTG+AGG | + | chr7.1:42222701-42222720 | MS.gene65141:CDS | 50.0% |
| CCAAGCACTAGAGGTCGGAA+AGG | + | chr7.1:42222941-42222960 | MS.gene65141:CDS | 55.0% | |
| CCTTTCCGACCTCTAGTGCT+TGG | - | chr7.1:42222944-42222963 | None:intergenic | 55.0% | |
| CGGTTTGCACCAGAACTTGG+TGG | + | chr7.1:42223673-42223692 | MS.gene65141:intron | 55.0% | |
| TGCAGCTGGAGCTGATAGTC+CGG | + | chr7.1:42222871-42222890 | MS.gene65141:CDS | 55.0% | |
| TTTCAACGCAGCTCCTGCCA+TGG | + | chr7.1:42223239-42223258 | MS.gene65141:intron | 55.0% | |
| CACAGAAGCCTGACCATGGC+AGG | - | chr7.1:42223255-42223274 | None:intergenic | 60.0% | |
| GGGTGCTTTGCAAAGCACGC+AGG | + | chr7.1:42223399-42223418 | MS.gene65141:CDS | 60.0% | |
| ACGCAGCTCCTGCCATGGTC+AGG | + | chr7.1:42223244-42223263 | MS.gene65141:intron | 65.0% | |
| GGAGCGATCTACGCGCTCCA+AGG | + | chr7.1:42222662-42222681 | MS.gene65141:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 42222535 | 42224466 | 42222535 | ID=MS.gene65141 |
| chr7.1 | mRNA | 42222535 | 42224466 | 42222535 | ID=MS.gene65141.t1;Parent=MS.gene65141 |
| chr7.1 | exon | 42222535 | 42222561 | 42222535 | ID=MS.gene65141.t1.exon1;Parent=MS.gene65141.t1 |
| chr7.1 | CDS | 42222535 | 42222561 | 42222535 | ID=cds.MS.gene65141.t1;Parent=MS.gene65141.t1 |
| chr7.1 | exon | 42222651 | 42222722 | 42222651 | ID=MS.gene65141.t1.exon2;Parent=MS.gene65141.t1 |
| chr7.1 | CDS | 42222651 | 42222722 | 42222651 | ID=cds.MS.gene65141.t1;Parent=MS.gene65141.t1 |
| chr7.1 | exon | 42222854 | 42222980 | 42222854 | ID=MS.gene65141.t1.exon3;Parent=MS.gene65141.t1 |
| chr7.1 | CDS | 42222854 | 42222980 | 42222854 | ID=cds.MS.gene65141.t1;Parent=MS.gene65141.t1 |
| chr7.1 | exon | 42223353 | 42223420 | 42223353 | ID=MS.gene65141.t1.exon4;Parent=MS.gene65141.t1 |
| chr7.1 | CDS | 42223353 | 42223420 | 42223353 | ID=cds.MS.gene65141.t1;Parent=MS.gene65141.t1 |
| chr7.1 | exon | 42224113 | 42224466 | 42224113 | ID=MS.gene65141.t1.exon5;Parent=MS.gene65141.t1 |
| chr7.1 | CDS | 42224113 | 42224466 | 42224113 | ID=cds.MS.gene65141.t1;Parent=MS.gene65141.t1 |
| Gene Sequence |
| Protein sequence |
