Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65268.t1 | XP_003606505.2 | 98.9 | 820 | 9 | 0 | 1 | 820 | 1 | 820 | 0.00E+00 | 1612 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65268.t1 | Q8RWZ7 | 79.1 | 819 | 165 | 3 | 1 | 815 | 1 | 817 | 0.0e+00 | 1317.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65268.t1 | G7JRI0 | 98.9 | 820 | 9 | 0 | 1 | 820 | 1 | 820 | 0.0e+00 | 1612.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene65268 | 0.82092 | 5.32E-53 | -1.69E-46 |
| MS.gene051067 | MS.gene65268 | 0.835445 | 1.67E-56 | -1.69E-46 |
| MS.gene055764 | MS.gene65268 | 0.821879 | 3.19E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65268 | MS.gene23322 | PPI |
| MS.gene23322 | MS.gene65268 | PPI |
| MS.gene003676 | MS.gene65268 | PPI |
| MS.gene50737 | MS.gene65268 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65268.t1 | MTR_4g061090 | 98.902 | 820 | 9 | 0 | 1 | 820 | 1 | 820 | 0.0 | 1684 |
| MS.gene65268.t1 | MTR_2g093210 | 86.114 | 821 | 110 | 2 | 1 | 820 | 1 | 818 | 0.0 | 1484 |
| MS.gene65268.t1 | MTR_2g093210 | 86.546 | 773 | 100 | 2 | 49 | 820 | 9 | 778 | 0.0 | 1404 |
| MS.gene65268.t1 | MTR_2g093210 | 84.753 | 669 | 98 | 2 | 1 | 668 | 1 | 666 | 0.0 | 1189 |
| MS.gene65268.t1 | MTR_4g071070 | 62.515 | 811 | 301 | 2 | 9 | 819 | 12 | 819 | 0.0 | 1058 |
| MS.gene65268.t1 | MTR_3g112500 | 60.166 | 723 | 285 | 2 | 11 | 732 | 1 | 721 | 0.0 | 908 |
| MS.gene65268.t1 | MTR_2g093210 | 83.366 | 511 | 81 | 2 | 1 | 510 | 1 | 508 | 0.0 | 883 |
| MS.gene65268.t1 | MTR_2g438500 | 61.818 | 55 | 21 | 0 | 1 | 55 | 1 | 55 | 6.36e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65268.t1 | AT2G28520 | 79.121 | 819 | 165 | 3 | 1 | 815 | 1 | 817 | 0.0 | 1339 |
| MS.gene65268.t1 | AT4G39080 | 63.424 | 812 | 290 | 5 | 11 | 819 | 14 | 821 | 0.0 | 1069 |
| MS.gene65268.t1 | AT2G21410 | 61.946 | 812 | 301 | 6 | 11 | 819 | 15 | 821 | 0.0 | 1061 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCATTGAGTTTGTTCT+TGG | 0.159404 | 4.3:-41285831 | MS.gene65268:CDS |
| TGAAGTTTCTTTAATATAAA+AGG | 0.184942 | 4.3:+41286366 | None:intergenic |
| ATCTTCGACTTTGGGCATTA+AGG | 0.218922 | 4.3:-41285785 | MS.gene65268:intron |
| AGCTTTATGGAGATGTTATT+TGG | 0.240092 | 4.3:-41288228 | MS.gene65268:CDS |
| GCATCTACAATTTCTTGATA+TGG | 0.247157 | 4.3:+41288972 | None:intergenic |
| ATGAAGATGTCCATTCTATT+TGG | 0.261369 | 4.3:-41286875 | MS.gene65268:CDS |
| CCAGCGACTAGGAAGCTTTA+TGG | 0.261951 | 4.3:-41288241 | MS.gene65268:intron |
| CTGAAAATTTGTGAAGCTTT+TGG | 0.275431 | 4.3:-41290392 | MS.gene65268:CDS |
| TATTTCAATGCTCGTTTCTT+TGG | 0.281066 | 4.3:-41286818 | MS.gene65268:CDS |
| ATCGCGCCTTGCTGACTTAG+AGG | 0.286780 | 4.3:-41289567 | MS.gene65268:CDS |
| TTCATGCCCTGCGTCTTCAC+TGG | 0.297238 | 4.3:-41283971 | MS.gene65268:CDS |
| TTGGCAGCTCACTGGATATA+AGG | 0.301774 | 4.3:-41286799 | MS.gene65268:intron |
| CAGCATCATATCTTCGACTT+TGG | 0.306552 | 4.3:-41285794 | MS.gene65268:CDS |
| AAAACCATCTCAGTTGAAAT+AGG | 0.314216 | 4.3:+41290587 | None:intergenic |
| AGATTTCAAGGACGCAATTA+TGG | 0.322855 | 4.3:-41285957 | MS.gene65268:CDS |
| TTGGTGAGAATGAGTTGTTC+TGG | 0.332655 | 4.3:-41286548 | MS.gene65268:CDS |
| TTCTTTAATATAAAAGGCTT+TGG | 0.332992 | 4.3:+41286372 | None:intergenic |
| CACCGAATCATCACCTATTT+AGG | 0.336677 | 4.3:-41294894 | MS.gene65268:CDS |
| TGGGATTAGGCATCGGAATA+AGG | 0.347557 | 4.3:-41289531 | MS.gene65268:CDS |
| TTAAGCCCCTTTGACAATCT+TGG | 0.349079 | 4.3:-41286567 | MS.gene65268:CDS |
| TAGGAGGTCATTTAGCAAAA+TGG | 0.353163 | 4.3:-41289496 | MS.gene65268:CDS |
| TTACTTATATCTTCAGGAAC+AGG | 0.356092 | 4.3:+41290356 | None:intergenic |
| CTTTATTGACCTGATCCATT+AGG | 0.359465 | 4.3:+41291637 | None:intergenic |
| CCTTTCAAACCTGAGAACTT+TGG | 0.360456 | 4.3:+41290679 | None:intergenic |
| CTTTGTTTACTTATATCTTC+AGG | 0.370890 | 4.3:+41290350 | None:intergenic |
| AGCATCATATCTTCGACTTT+GGG | 0.372911 | 4.3:-41285793 | MS.gene65268:CDS |
| TTGCCTGCTGCTTGGAGCAT+TGG | 0.373696 | 4.3:-41288704 | MS.gene65268:CDS |
| ACCGGCTGATGAGCAAATTA+TGG | 0.379432 | 4.3:-41290612 | MS.gene65268:CDS |
| GAAAGTCCTGCTACTAGCTT+GGG | 0.380018 | 4.3:-41285642 | MS.gene65268:CDS |
| CAACTTTGGATGCTGGGATT+AGG | 0.380654 | 4.3:-41289544 | MS.gene65268:CDS |
| ACCATACTTGGAGTGGCCTT+TGG | 0.387768 | 4.3:+41286523 | None:intergenic |
| CAGCTGGGATCCACACCAAA+TGG | 0.388952 | 4.3:+41286941 | None:intergenic |
| TGCTGACTTAGAGGCAACTT+TGG | 0.394715 | 4.3:-41289558 | MS.gene65268:CDS |
| TGCGGTGATGTTTGGCGACT+GGG | 0.396749 | 4.3:-41288737 | MS.gene65268:CDS |
| TGTAAATCATTATATGATAA+AGG | 0.396986 | 4.3:+41286595 | None:intergenic |
| TTGCGGTGATGTTTGGCGAC+TGG | 0.401761 | 4.3:-41288738 | MS.gene65268:CDS |
| CCTGGTTAACAAATGTTCTC+TGG | 0.402153 | 4.3:+41293140 | None:intergenic |
| GTTAAGGTGGCAAAGGAAAA+AGG | 0.402739 | 4.3:+41283900 | None:intergenic |
| CATGGAATTTGCCTGCTGCT+TGG | 0.408029 | 4.3:-41288712 | MS.gene65268:CDS |
| CCCTTCTCATTGTTGTCAAG+TGG | 0.418217 | 4.3:-41286638 | MS.gene65268:CDS |
| AAGACCGAGTTGGCCTAAAT+AGG | 0.420717 | 4.3:+41294881 | None:intergenic |
| AAGAAAGCTACGGTTCCTAA+TGG | 0.421538 | 4.3:-41291652 | MS.gene65268:CDS |
| TTATAAATCTTAAACCAGAT+TGG | 0.422718 | 4.3:+41290720 | None:intergenic |
| TTTGTACAGGAAACGATGCC+TGG | 0.425553 | 4.3:-41290758 | MS.gene65268:intron |
| GTTCAAAATTGTTCTGCAAA+AGG | 0.425950 | 4.3:-41291338 | MS.gene65268:intron |
| TTTGTAAATCCAAAGTTCTC+AGG | 0.426855 | 4.3:-41290688 | MS.gene65268:CDS |
| CAAGTGGTGTACTGGCTCTC+AGG | 0.427335 | 4.3:-41286622 | MS.gene65268:CDS |
| ATTGTTGTCAAGTGGTGTAC+TGG | 0.431280 | 4.3:-41286630 | MS.gene65268:CDS |
| AATCTACAATGAATTCTTCT+CGG | 0.431483 | 4.3:-41288154 | MS.gene65268:CDS |
| TGAACGACTTCCACGCCAGC+TGG | 0.432096 | 4.3:+41286925 | None:intergenic |
| ATAATAGTTGTGTAAACTGC+TGG | 0.436616 | 4.3:+41288775 | None:intergenic |
| TCATGCCCTGCGTCTTCACT+GGG | 0.437229 | 4.3:-41283970 | MS.gene65268:CDS |
| TGGTGAGAATGAGTTGTTCT+GGG | 0.439666 | 4.3:-41286547 | MS.gene65268:CDS |
| AGCGGATCTTGAGGTTGAAC+CGG | 0.441981 | 4.3:-41285916 | MS.gene65268:CDS |
| CCATCAAAATCTAACCAATC+TGG | 0.443170 | 4.3:-41290734 | MS.gene65268:CDS |
| ATGATATTATAGAGATTTCA+AGG | 0.443554 | 4.3:-41285969 | MS.gene65268:intron |
| CAATCTTATCATTCGGTTAG+TGG | 0.444110 | 4.3:-41284060 | MS.gene65268:CDS |
| TGAAAGGAAGCTCAGCAATC+AGG | 0.445908 | 4.3:-41288668 | MS.gene65268:intron |
| CCTTCATTCAATGGATGCAC+TGG | 0.450088 | 4.3:-41289036 | MS.gene65268:CDS |
| ATGGATCAGGTCAATAAAGC+TGG | 0.450542 | 4.3:-41291633 | MS.gene65268:CDS |
| AATCTTATCATTCGGTTAGT+GGG | 0.451403 | 4.3:-41284059 | MS.gene65268:CDS |
| TGATGTTGCCTGGCAGAATC+CGG | 0.452630 | 4.3:+41285897 | None:intergenic |
| TGGCTCTAATTGCAGTTCCA+TGG | 0.455979 | 4.3:-41286404 | MS.gene65268:CDS |
| ATGTTTGGCGACTGGGGTCA+TGG | 0.458466 | 4.3:-41288730 | MS.gene65268:CDS |
| CCAGAGAACATTTGTTAACC+AGG | 0.459096 | 4.3:-41293140 | MS.gene65268:intron |
| TAGAGGCAACTTTGGATGCT+GGG | 0.459606 | 4.3:-41289550 | MS.gene65268:CDS |
| GATACCCAAATAGACTGTTA+AGG | 0.471115 | 4.3:+41286664 | None:intergenic |
| ACTCAATGGAGTGAATCATT+TGG | 0.472059 | 4.3:+41285841 | None:intergenic |
| CTGGTTTAAGATTTATAAGC+GGG | 0.472941 | 4.3:-41290715 | MS.gene65268:CDS |
| TTCTCACCAAGATTGTCAAA+GGG | 0.473262 | 4.3:+41286561 | None:intergenic |
| TACAGAGAACCATACCCATT+TGG | 0.473631 | 4.3:-41286956 | MS.gene65268:CDS |
| CAAGAAATTGTAGATGCATA+CGG | 0.479666 | 4.3:-41288966 | MS.gene65268:CDS |
| ATTAAAGAAACTTCATAATG+AGG | 0.480131 | 4.3:-41286358 | MS.gene65268:intron |
| ATTAGGGATGCACATACTAC+TGG | 0.480874 | 4.3:-41286989 | MS.gene65268:intron |
| GGTATGACAATCTTATCATT+CGG | 0.482846 | 4.3:-41284067 | MS.gene65268:CDS |
| GGCTTTGGAAAGAGCATCCA+TGG | 0.483435 | 4.3:+41286387 | None:intergenic |
| TTAGAGGCAACTTTGGATGC+TGG | 0.483664 | 4.3:-41289551 | MS.gene65268:CDS |
| AGAAAGTCCTGCTACTAGCT+TGG | 0.483862 | 4.3:-41285643 | MS.gene65268:CDS |
| CAGTTCTCTCTCTTCTGAAA+CGG | 0.484945 | 4.3:+41290949 | None:intergenic |
| TTGAACGAATGTCATCTTCT+CGG | 0.485629 | 4.3:+41294941 | None:intergenic |
| CCAGTGCATCCATTGAATGA+AGG | 0.486632 | 4.3:+41289036 | None:intergenic |
| GGCCTAAATAGGTGATGATT+CGG | 0.486922 | 4.3:+41294892 | None:intergenic |
| ATCTTGAGAGAGTTTAGAAA+GGG | 0.494160 | 4.3:+41286896 | None:intergenic |
| CCAAAGTTCTCAGGTTTGAA+AGG | 0.494490 | 4.3:-41290679 | MS.gene65268:CDS |
| AATAAATTCTACCACGGTGA+TGG | 0.495855 | 4.3:-41283936 | MS.gene65268:CDS |
| CTTGCAATCAGATACATACT+TGG | 0.497578 | 4.3:-41291589 | MS.gene65268:CDS |
| TCCGATATTTGCAAAAGCAC+AGG | 0.497930 | 4.3:-41289243 | MS.gene65268:intron |
| TATCTGATTGCAAGACAGAA+TGG | 0.498874 | 4.3:+41291598 | None:intergenic |
| CGTTTCAGAAGAGAGAGAAC+TGG | 0.499370 | 4.3:-41290948 | MS.gene65268:CDS |
| GGATCCTATTTCAACTGAGA+TGG | 0.501291 | 4.3:-41290591 | MS.gene65268:intron |
| AAATTCCTCATGATGTTGCC+TGG | 0.502941 | 4.3:+41285887 | None:intergenic |
| GCTACGGTTCCTAATGGATC+AGG | 0.503423 | 4.3:-41291646 | MS.gene65268:CDS |
| CATCTTGAGAGAGTTTAGAA+AGG | 0.509747 | 4.3:+41286895 | None:intergenic |
| TCGTTTCTTTGGCAGCTCAC+TGG | 0.510044 | 4.3:-41286807 | MS.gene65268:CDS |
| GACGCACCAAATATGTGAAA+AGG | 0.511111 | 4.3:+41288129 | None:intergenic |
| CATTTGGTGTGGATCCCAGC+TGG | 0.512737 | 4.3:-41286940 | MS.gene65268:CDS |
| GAACCAATGCTCCAAGCAGC+AGG | 0.514977 | 4.3:+41288701 | None:intergenic |
| ATTCGGTGAGCGGACTCAGC+GGG | 0.515932 | 4.3:+41294909 | None:intergenic |
| AGGTTGAACCGGATTCTGCC+AGG | 0.519264 | 4.3:-41285905 | MS.gene65268:CDS |
| TTATGGAGATGTTATTTGGT+GGG | 0.523066 | 4.3:-41288224 | MS.gene65268:CDS |
| ATGTACCACACCAAATAGAA+TGG | 0.523321 | 4.3:+41286865 | None:intergenic |
| TAACAAATGTTCTCTGGAAG+GGG | 0.525703 | 4.3:+41293146 | None:intergenic |
| TACATACTTGGAGGATATAG+AGG | 0.538894 | 4.3:-41291577 | MS.gene65268:intron |
| ATTCTCACCAAGATTGTCAA+AGG | 0.538979 | 4.3:+41286560 | None:intergenic |
| AGCTGGGATCCACACCAAAT+GGG | 0.540431 | 4.3:+41286942 | None:intergenic |
| TGGTGTGGTACATATGAACT+TGG | 0.541184 | 4.3:-41286855 | MS.gene65268:CDS |
| TTAACAAATGTTCTCTGGAA+GGG | 0.543625 | 4.3:+41293145 | None:intergenic |
| TCCATAATTTGCTCATCAGC+CGG | 0.544690 | 4.3:+41290611 | None:intergenic |
| ATATGGATTTGTGAAACTGT+TGG | 0.545071 | 4.3:+41288989 | None:intergenic |
| AGAACCAAGAACAAACTCAA+TGG | 0.546926 | 4.3:+41285827 | None:intergenic |
| GCAATCAGATACATACTTGG+AGG | 0.551244 | 4.3:-41291586 | MS.gene65268:CDS |
| CTGTTGGTTCTAAAATATGT+AGG | 0.554704 | 4.3:+41289005 | None:intergenic |
| TACTTATATCTTCAGGAACA+GGG | 0.558496 | 4.3:+41290357 | None:intergenic |
| GGATCCACACCAAATGGGTA+TGG | 0.561377 | 4.3:+41286947 | None:intergenic |
| AATAAGGCTCTATCTTCTGT+AGG | 0.561847 | 4.3:-41289515 | MS.gene65268:CDS |
| GACACCTGCATGAACTATCT+CGG | 0.562857 | 4.3:+41288094 | None:intergenic |
| TTTGACAGCAATTCTCAAGT+GGG | 0.564303 | 4.3:-41289065 | MS.gene65268:CDS |
| ATGAGTTGTTCTGGGGCCAA+AGG | 0.565727 | 4.3:-41286539 | MS.gene65268:CDS |
| CCACTTGACAACAATGAGAA+GGG | 0.565912 | 4.3:+41286638 | None:intergenic |
| GTAAACAAAGGCAAATAACC+CGG | 0.566335 | 4.3:-41290337 | MS.gene65268:CDS |
| TACCTCTGAAGCGGATCTTG+AGG | 0.567052 | 4.3:-41285925 | MS.gene65268:CDS |
| AAGAAATTGTAGATGCATAC+GGG | 0.568650 | 4.3:-41288965 | MS.gene65268:intron |
| GTTAACAAATGTTCTCTGGA+AGG | 0.571175 | 4.3:+41293144 | None:intergenic |
| ATCTGATTGCAAGACAGAAT+GGG | 0.571405 | 4.3:+41291599 | None:intergenic |
| ATCACCTATTTAGGCCAACT+CGG | 0.571758 | 4.3:-41294885 | MS.gene65268:CDS |
| TTTATGGAGATGTTATTTGG+TGG | 0.575690 | 4.3:-41288225 | MS.gene65268:CDS |
| TATGATTTCTGCCAGCGACT+AGG | 0.579385 | 4.3:-41288252 | MS.gene65268:intron |
| TGGATGCTGGGATTAGGCAT+CGG | 0.580692 | 4.3:-41289538 | MS.gene65268:CDS |
| TGGTTCTTATAGCACATGAA+AGG | 0.580897 | 4.3:-41288684 | MS.gene65268:CDS |
| GAAAAGCATATTGCCTCTTG+TGG | 0.583078 | 4.3:+41290643 | None:intergenic |
| GAACGACTTCCACGCCAGCT+GGG | 0.584129 | 4.3:+41286926 | None:intergenic |
| TGGATCAGGTCAATAAAGCT+GGG | 0.585348 | 4.3:-41291632 | MS.gene65268:CDS |
| ATCCTCGGTTAAGGTGGCAA+AGG | 0.586241 | 4.3:+41283893 | None:intergenic |
| TTGACAGCAATTCTCAAGTG+GGG | 0.586879 | 4.3:-41289064 | MS.gene65268:CDS |
| TTCTGCCAGGCAACATCATG+AGG | 0.588694 | 4.3:-41285892 | MS.gene65268:CDS |
| ATCTTATCATTCGGTTAGTG+GGG | 0.588871 | 4.3:-41284058 | MS.gene65268:CDS |
| ATAGGTGATGATTCGGTGAG+CGG | 0.591098 | 4.3:+41294899 | None:intergenic |
| ACCACTTGACAACAATGAGA+AGG | 0.593169 | 4.3:+41286637 | None:intergenic |
| AGGTCATTTAGCAAAATGGA+TGG | 0.593655 | 4.3:-41289492 | MS.gene65268:CDS |
| GAACGCATGAGATCCATTGA+AGG | 0.595669 | 4.3:+41294963 | None:intergenic |
| ATGTTGTTTCGTGCCACAAG+AGG | 0.596841 | 4.3:-41290656 | MS.gene65268:CDS |
| TTCCTTTGCCACCTTAACCG+AGG | 0.599921 | 4.3:-41283895 | MS.gene65268:CDS |
| TTCAGAAGAGAGAGAACTGG+AGG | 0.604048 | 4.3:-41290945 | MS.gene65268:CDS |
| TGACAGCAATTCTCAAGTGG+GGG | 0.606342 | 4.3:-41289063 | MS.gene65268:CDS |
| GTCCTAGGTAAGAAGAGAGA+AGG | 0.607614 | 4.3:-41289336 | MS.gene65268:intron |
| AACCTCAAGATCCGCTTCAG+AGG | 0.611912 | 4.3:+41285923 | None:intergenic |
| AATGTCTTGTTGGAGAGGGC+TGG | 0.614708 | 4.3:-41289268 | MS.gene65268:CDS |
| AAGGCTCTATCTTCTGTAGG+AGG | 0.618034 | 4.3:-41289512 | MS.gene65268:CDS |
| CAGAAATGTCAAGAAAGCTA+CGG | 0.623573 | 4.3:-41291662 | MS.gene65268:CDS |
| TTTCAAAATAAATTCTACCA+CGG | 0.624068 | 4.3:-41283942 | MS.gene65268:CDS |
| TTCAACCCAGTGAAGACGCA+GGG | 0.627548 | 4.3:+41283965 | None:intergenic |
| GAAATTGAAGAAGACCGAGT+TGG | 0.632332 | 4.3:+41294871 | None:intergenic |
| ATTCAACCCAGTGAAGACGC+AGG | 0.632811 | 4.3:+41283964 | None:intergenic |
| CTGAAGATATAAGTAAACAA+AGG | 0.646221 | 4.3:-41290349 | MS.gene65268:CDS |
| TCTGGTTTAAGATTTATAAG+CGG | 0.646579 | 4.3:-41290716 | MS.gene65268:CDS |
| TAAACAAAGGCAAATAACCC+GGG | 0.647105 | 4.3:-41290336 | MS.gene65268:CDS |
| TTTAGCAAAATGGATGGACA+TGG | 0.648626 | 4.3:-41289486 | MS.gene65268:intron |
| AAAGTCCTGCTACTAGCTTG+GGG | 0.651364 | 4.3:-41285641 | MS.gene65268:CDS |
| GCGGTGATGTTTGGCGACTG+GGG | 0.651684 | 4.3:-41288736 | MS.gene65268:CDS |
| TTGGTTCTAAAATATGTAGG+TGG | 0.652091 | 4.3:+41289008 | None:intergenic |
| TGTGCTTAATACCTCTGAAG+CGG | 0.653524 | 4.3:-41285934 | MS.gene65268:CDS |
| AATGCCGAGATAGTTCATGC+AGG | 0.655608 | 4.3:-41288098 | MS.gene65268:intron |
| TCTCACCAAGATTGTCAAAG+GGG | 0.658739 | 4.3:+41286562 | None:intergenic |
| GATGTCCATTCTATTTGGTG+TGG | 0.659577 | 4.3:-41286870 | MS.gene65268:CDS |
| GGTGTGGATCCCAGCTGGCG+TGG | 0.661930 | 4.3:-41286935 | MS.gene65268:CDS |
| GGTGTGGTACATATGAACTT+GGG | 0.664543 | 4.3:-41286854 | MS.gene65268:CDS |
| GGTGAGAATGAGTTGTTCTG+GGG | 0.669382 | 4.3:-41286546 | MS.gene65268:CDS |
| TGAGGAATTTAATTTCAGTG+AGG | 0.676594 | 4.3:-41285874 | MS.gene65268:CDS |
| AGAACCATACCCATTTGGTG+TGG | 0.678548 | 4.3:-41286951 | MS.gene65268:CDS |
| AAGTTGCCTCTAAGTCAGCA+AGG | 0.680382 | 4.3:+41289561 | None:intergenic |
| GATTCGGTGAGCGGACTCAG+CGG | 0.691576 | 4.3:+41294908 | None:intergenic |
| AAGTCCTGCTACTAGCTTGG+GGG | 0.696904 | 4.3:-41285640 | MS.gene65268:intron |
| CTGTTAAGGAAAATCATCTG+CGG | 0.714419 | 4.3:+41286678 | None:intergenic |
| ACAAAGGCAAATAACCCGGG+AGG | 0.743957 | 4.3:-41290333 | MS.gene65268:intron |
| TGAACTTGTATCCATCACCG+TGG | 0.780160 | 4.3:+41283925 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 41283884 | 41295009 | 41283884 | ID=MS.gene65268 |
| chr4.3 | mRNA | 41283884 | 41295009 | 41283884 | ID=MS.gene65268.t1;Parent=MS.gene65268 |
| chr4.3 | exon | 41294866 | 41295009 | 41294866 | ID=MS.gene65268.t1.exon1;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41294866 | 41295009 | 41294866 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41293141 | 41293185 | 41293141 | ID=MS.gene65268.t1.exon2;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41293141 | 41293185 | 41293141 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41291578 | 41291697 | 41291578 | ID=MS.gene65268.t1.exon3;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41291578 | 41291697 | 41291578 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41291339 | 41291446 | 41291339 | ID=MS.gene65268.t1.exon4;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41291339 | 41291446 | 41291339 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41290892 | 41291005 | 41290892 | ID=MS.gene65268.t1.exon5;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41290892 | 41291005 | 41290892 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41290592 | 41290771 | 41290592 | ID=MS.gene65268.t1.exon6;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41290592 | 41290771 | 41290592 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41290334 | 41290471 | 41290334 | ID=MS.gene65268.t1.exon7;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41290334 | 41290471 | 41290334 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41289487 | 41289594 | 41289487 | ID=MS.gene65268.t1.exon8;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41289487 | 41289594 | 41289487 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41289244 | 41289351 | 41289244 | ID=MS.gene65268.t1.exon9;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41289244 | 41289351 | 41289244 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41288966 | 41289114 | 41288966 | ID=MS.gene65268.t1.exon10;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41288966 | 41289114 | 41288966 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41288669 | 41288822 | 41288669 | ID=MS.gene65268.t1.exon11;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41288669 | 41288822 | 41288669 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41288099 | 41288259 | 41288099 | ID=MS.gene65268.t1.exon12;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41288099 | 41288259 | 41288099 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41286800 | 41287006 | 41286800 | ID=MS.gene65268.t1.exon13;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41286800 | 41287006 | 41286800 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41286530 | 41286713 | 41286530 | ID=MS.gene65268.t1.exon14;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41286530 | 41286713 | 41286530 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41286359 | 41286442 | 41286359 | ID=MS.gene65268.t1.exon15;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41286359 | 41286442 | 41286359 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41285786 | 41285979 | 41285786 | ID=MS.gene65268.t1.exon16;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41285786 | 41285979 | 41285786 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41285641 | 41285700 | 41285641 | ID=MS.gene65268.t1.exon17;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41285641 | 41285700 | 41285641 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| chr4.3 | exon | 41283884 | 41284088 | 41283884 | ID=MS.gene65268.t1.exon18;Parent=MS.gene65268.t1 |
| chr4.3 | CDS | 41283884 | 41284088 | 41283884 | ID=cds.MS.gene65268.t1;Parent=MS.gene65268.t1 |
| Gene Sequence |
| Protein sequence |
