Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66289.t1 | XP_013453257.1 | 89.5 | 525 | 28 | 3 | 1 | 500 | 288 | 810 | 2.10E-257 | 898.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66289.t1 | F4IK92 | 34.2 | 535 | 295 | 15 | 2 | 500 | 303 | 816 | 7.9e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66289.t1 | A0A072UCF1 | 89.5 | 525 | 28 | 3 | 1 | 500 | 131 | 653 | 1.5e-257 | 898.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene66289 | 0.807048 | 6.11E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene66289 | 0.830485 | 2.86E-55 | -1.69E-46 |
| MS.gene050297 | MS.gene66289 | 0.830095 | 3.56E-55 | -1.69E-46 |
| MS.gene051263 | MS.gene66289 | 0.80097 | 1.12E-48 | -1.69E-46 |
| MS.gene052731 | MS.gene66289 | 0.818809 | 1.61E-52 | -1.69E-46 |
| MS.gene055957 | MS.gene66289 | 0.821825 | 3.29E-53 | -1.69E-46 |
| MS.gene056042 | MS.gene66289 | 0.8039 | 2.79E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene66289 | 0.813405 | 2.60E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene66289 | 0.812719 | 3.68E-51 | -1.69E-46 |
| MS.gene059300 | MS.gene66289 | 0.824756 | 6.79E-54 | -1.69E-46 |
| MS.gene06057 | MS.gene66289 | 0.827938 | 1.19E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66289.t1 | MTR_6g093150 | 89.524 | 525 | 28 | 3 | 1 | 500 | 288 | 810 | 0.0 | 963 |
| MS.gene66289.t1 | MTR_6g093150 | 89.524 | 525 | 28 | 3 | 1 | 500 | 131 | 653 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66289.t1 | AT2G07170 | 34.142 | 536 | 294 | 15 | 2 | 500 | 303 | 816 | 1.36e-69 | 242 |
Find 0 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATCAATATGAAAT+TGG | - | 41772:3423-3442 | None:intergenic | 10.0% |
| !! | AAGAAAATTAGTTATTTATT+TGG | - | 41772:4531-4550 | None:intergenic | 10.0% |
| !! | AATTGAAAAATAACTAATTA+AGG | + | 41772:2425-2444 | MS.gene66289:intron | 10.0% |
| !! | AGAAAATTAGTTATTTATTT+GGG | - | 41772:4530-4549 | None:intergenic | 10.0% |
| !!! | TTTGATTTAAAAATTGATAA+TGG | + | 41772:4006-4025 | MS.gene66289:intron | 10.0% |
| !! | GAAAGTTAATAATGTATTTA+TGG | + | 41772:2939-2958 | MS.gene66289:intron | 15.0% |
| !! | GATTGTTTATTTAAAGAATA+GGG | + | 41772:3712-3731 | MS.gene66289:intron | 15.0% |
| !! | TGATTGTTTATTTAAAGAAT+AGG | + | 41772:3711-3730 | MS.gene66289:intron | 15.0% |
| !!! | AATATGAATATTGTAACTTT+TGG | + | 41772:1522-1541 | MS.gene66289:intron | 15.0% |
| !!! | ACTTTTTAAATAATCTCTTT+CGG | + | 41772:3807-3826 | MS.gene66289:intron | 15.0% |
| !!! | ATCAATTTTTAAATCAAACT+GGG | - | 41772:4004-4023 | None:intergenic | 15.0% |
| !!! | TAATTTTTATTTTCTTCTGA+TGG | + | 41772:2547-2566 | MS.gene66289:intron | 15.0% |
| !!! | TATCAATTTTTAAATCAAAC+TGG | - | 41772:4005-4024 | None:intergenic | 15.0% |
| !!! | TTGATTTCATATTAAGTTTT+TGG | - | 41772:704-723 | None:intergenic | 15.0% |
| !! | AAATTAGTTATTTATTTGGG+CGG | - | 41772:4527-4546 | None:intergenic | 20.0% |
| !! | ACTTAATATGAAATCAACTA+CGG | + | 41772:707-726 | MS.gene66289:CDS | 20.0% |
| !! | AGGATATATATAAAGACATT+TGG | + | 41772:414-433 | MS.gene66289:intron | 20.0% |
| !! | ATTAATAATAAGACACAGTT+TGG | - | 41772:4961-4980 | None:intergenic | 20.0% |
| !! | CAATAAAATTACATCATATC+TGG | + | 41772:2904-2923 | MS.gene66289:CDS | 20.0% |
| !! | GATATCAAAATTCAAAAAGA+GGG | - | 41772:372-391 | None:intergenic | 20.0% |
| !! | TGAAATATGATTACAATGAA+TGG | - | 41772:3907-3926 | None:intergenic | 20.0% |
| !! | TGATATCAAAATTCAAAAAG+AGG | - | 41772:373-392 | None:intergenic | 20.0% |
| !! | TGGATTCAAAATTTAACATT+TGG | - | 41772:3838-3857 | None:intergenic | 20.0% |
| !! | TTATCTCAAGAATCTTTAAA+AGG | + | 41772:1728-1747 | MS.gene66289:CDS | 20.0% |
| !! | TTTGATATCAATATTGCTAT+TGG | + | 41772:383-402 | MS.gene66289:intron | 20.0% |
| !!! | ACAACATTGTTAAATTTTGA+GGG | + | 41772:3869-3888 | MS.gene66289:intron | 20.0% |
| !!! | AGATGTTATTTAAGATCAAT+GGG | - | 41772:4181-4200 | None:intergenic | 20.0% |
| !!! | GTGATAAAAAATGTTTTCAT+CGG | - | 41772:3765-3784 | None:intergenic | 20.0% |
| !!! | TAAAGTTTTTCATTTCATGT+TGG | - | 41772:4156-4175 | None:intergenic | 20.0% |
| !!! | TACAACATTGTTAAATTTTG+AGG | + | 41772:3868-3887 | MS.gene66289:intron | 20.0% |
| !!! | TGATAAAAAATGTTTTCATC+GGG | - | 41772:3764-3783 | None:intergenic | 20.0% |
| !!! | TTAAAAATTGATAATGGTAG+TGG | + | 41772:4012-4031 | MS.gene66289:intron | 20.0% |
| !!! | TTTTTTATCACTCAAATGTT+AGG | + | 41772:3774-3793 | MS.gene66289:intron | 20.0% |
| ! | AAACAAGAACACTATCTAAT+TGG | - | 41772:454-473 | None:intergenic | 25.0% |
| ! | AACAAGAACACTATCTAATT+GGG | - | 41772:453-472 | None:intergenic | 25.0% |
| ! | ACAAAATACATAGAACAAAC+TGG | - | 41772:3034-3053 | None:intergenic | 25.0% |
| ! | ACAACATTGATGTGTAATTT+GGG | - | 41772:1159-1178 | None:intergenic | 25.0% |
| ! | ACTCTACAATTAAATGTGTT+TGG | - | 41772:3660-3679 | None:intergenic | 25.0% |
| ! | ATAAATGAGCTACTGTATAT+CGG | - | 41772:1345-1364 | None:intergenic | 25.0% |
| ! | ATCATATCAACACTAATACA+CGG | - | 41772:3695-3714 | None:intergenic | 25.0% |
| ! | ATGGATAAACTTTCTATAAC+TGG | - | 41772:2253-2272 | None:intergenic | 25.0% |
| ! | ATTTAAACTACTATCACTCT+TGG | - | 41772:4301-4320 | None:intergenic | 25.0% |
| ! | CTCTACAATTAAATGTGTTT+GGG | - | 41772:3659-3678 | None:intergenic | 25.0% |
| ! | CTTAATATGAAATCAACTAC+GGG | + | 41772:708-727 | MS.gene66289:CDS | 25.0% |
| ! | GTTAAACAATTTAATAACCC+AGG | - | 41772:2641-2660 | None:intergenic | 25.0% |
| ! | TCAAGGTCAATAAAAGATAT+TGG | + | 41772:5079-5098 | MS.gene66289:intron | 25.0% |
| ! | TGATTGCTAATCTTATACAT+TGG | + | 41772:561-580 | MS.gene66289:intron | 25.0% |
| ! | TTAATGTTAATCTCTAAACC+AGG | + | 41772:5220-5239 | MS.gene66289:intron | 25.0% |
| ! | TTCAGATATTGAAATCAAAC+AGG | + | 41772:1220-1239 | MS.gene66289:CDS | 25.0% |
| ! | TTCTTCGATCAAGTATTATA+AGG | - | 41772:3969-3988 | None:intergenic | 25.0% |
| ! | TTTAAACTACTATCACTCTT+GGG | - | 41772:4300-4319 | None:intergenic | 25.0% |
| !! | AATGCTTTGAATACCATTTA+AGG | - | 41772:2488-2507 | None:intergenic | 25.0% |
| !! | ATATCAATATTGCTATTGGT+TGG | + | 41772:387-406 | MS.gene66289:intron | 25.0% |
| !! | CAAATGAAATGACTTGTATT+CGG | + | 41772:1189-1208 | MS.gene66289:CDS | 25.0% |
| !! | CAGATGTTATTTAAGATCAA+TGG | - | 41772:4182-4201 | None:intergenic | 25.0% |
| !! | GATAAAAAATGTTTTCATCG+GGG | - | 41772:3763-3782 | None:intergenic | 25.0% |
| !! | TATCTTTTATTGACCTTGAA+AGG | - | 41772:5078-5097 | None:intergenic | 25.0% |
| !! | TGGAAAAAAGATCATTTTCA+AGG | + | 41772:1900-1919 | MS.gene66289:CDS | 25.0% |
| !! | TTTTAAATCAAAGTCAGACT+TGG | - | 41772:5312-5331 | None:intergenic | 25.0% |
| !!! | AAATTTGGAGTTTTCTGAAA+AGG | - | 41772:1765-1784 | None:intergenic | 25.0% |
| !!! | ATCATTGATAATGCAAATGT+AGG | + | 41772:2662-2681 | MS.gene66289:intron | 25.0% |
| !!! | ATGTTAGTCTTTCTTGTTTT+AGG | + | 41772:2740-2759 | MS.gene66289:intron | 25.0% |
| !!! | CTTTTTCAGATTTTTACAAC+TGG | + | 41772:1641-1660 | MS.gene66289:intron | 25.0% |
| !!! | GAGTATTGACATTAAAATCA+GGG | - | 41772:3280-3299 | None:intergenic | 25.0% |
| !!! | GTTTGGTGAATTTTTTTTGA+GGG | + | 41772:3071-3090 | MS.gene66289:intron | 25.0% |
| !!! | TGTTTGGTGAATTTTTTTTG+AGG | + | 41772:3070-3089 | MS.gene66289:intron | 25.0% |
| AAAGCATGTCAAAATGATGT+TGG | + | 41772:753-772 | MS.gene66289:CDS | 30.0% | |
| AAATAACTGATATACTTCCC+AGG | - | 41772:2720-2739 | None:intergenic | 30.0% | |
| ACAGTTTGGTTATTGATGTT+AGG | - | 41772:4947-4966 | None:intergenic | 30.0% | |
| ACATCAATGTTGTGTACAAA+GGG | + | 41772:1166-1185 | MS.gene66289:CDS | 30.0% | |
| AGATCTAAACTCTGCATATA+TGG | + | 41772:2171-2190 | MS.gene66289:CDS | 30.0% | |
| AGGATAATTTGAACTGCTTA+GGG | + | 41772:2002-2021 | MS.gene66289:CDS | 30.0% | |
| AGTATCTCTAATTGAAGCTA+CGG | + | 41772:3214-3233 | MS.gene66289:intron | 30.0% | |
| ATGATAAGAAGAAGAAAGAG+AGG | + | 41772:4385-4404 | MS.gene66289:intron | 30.0% | |
| ATTGAAAGAGCAATGCAATT+TGG | - | 41772:2792-2811 | None:intergenic | 30.0% | |
| ATTGTTTACAAAGCAGTCAT+GGG | - | 41772:1012-1031 | None:intergenic | 30.0% | |
| CAACATTGATGTGTAATTTG+GGG | - | 41772:1158-1177 | None:intergenic | 30.0% | |
| CAACTTATTACTTCCTCTAA+CGG | - | 41772:1065-1084 | None:intergenic | 30.0% | |
| CAATGTTGTATTCACACTAT+TGG | - | 41772:3858-3877 | None:intergenic | 30.0% | |
| CACAACATTGATGTGTAATT+TGG | - | 41772:1160-1179 | None:intergenic | 30.0% | |
| CTTTCTACAGAAAATATCTG+CGG | + | 41772:612-631 | MS.gene66289:intron | 30.0% | |
| GGATATGTGTAAAAGTTACA+AGG | + | 41772:1955-1974 | MS.gene66289:CDS | 30.0% | |
| TAAACTTTCTATAACTGGAC+CGG | - | 41772:2248-2267 | None:intergenic | 30.0% | |
| TAATCACAGAAGAGATTGAA+AGG | - | 41772:4753-4772 | None:intergenic | 30.0% | |
| TAATTGCTAGCAAACTCATT+AGG | + | 41772:3103-3122 | MS.gene66289:intron | 30.0% | |
| TACTCTCAAACTCTTCATTA+TGG | - | 41772:854-873 | None:intergenic | 30.0% | |
| TCACTCAAATGTTAGGAATT+TGG | + | 41772:3781-3800 | MS.gene66289:intron | 30.0% | |
| TCATATCAACACTAATACAC+GGG | - | 41772:3694-3713 | None:intergenic | 30.0% | |
| TCTTGATTGGATTGTAGAAA+GGG | - | 41772:1678-1697 | None:intergenic | 30.0% | |
| TGTTTGGGAAAAGTAGTATT+AGG | - | 41772:3644-3663 | None:intergenic | 30.0% | |
| TTAAACTACTATCACTCTTG+GGG | - | 41772:4299-4318 | None:intergenic | 30.0% | |
| TTCTACAATCCAATCAAGAA+TGG | + | 41772:1679-1698 | MS.gene66289:CDS | 30.0% | |
| TTCTTGATTGGATTGTAGAA+AGG | - | 41772:1679-1698 | None:intergenic | 30.0% | |
| ! | AAATTATCCTCTCTGACTTT+TGG | - | 41772:1992-2011 | None:intergenic | 30.0% |
| ! | AAGAACATTGACAGTTTTCA+TGG | - | 41772:2272-2291 | None:intergenic | 30.0% |
| ! | AAGCATTGTTAACATTTGCA+GGG | - | 41772:5154-5173 | None:intergenic | 30.0% |
| ! | AATTATCCTCTCTGACTTTT+GGG | - | 41772:1991-2010 | None:intergenic | 30.0% |
| ! | ATTGTATTTTTCACATGGCA+TGG | - | 41772:2586-2605 | None:intergenic | 30.0% |
| ! | ATTTGAAGTAATGTCCGAAA+TGG | + | 41772:1564-1583 | MS.gene66289:intron | 30.0% |
| ! | ATTTTTCCTTCCAGAAGATA+CGG | - | 41772:2310-2329 | None:intergenic | 30.0% |
| ! | GACTTTTATTAAAGACCAGA+GGG | + | 41772:4201-4220 | MS.gene66289:intron | 30.0% |
| ! | GATTTTTACAACTGGCATAA+TGG | + | 41772:1649-1668 | MS.gene66289:intron | 30.0% |
| ! | GCTTTTATATGCAATTCAAG+AGG | + | 41772:2827-2846 | MS.gene66289:CDS | 30.0% |
| ! | TATTGCTATTGGTTGGAATA+AGG | + | 41772:394-413 | MS.gene66289:intron | 30.0% |
| ! | TCTCAAGAATCTTTAAAAGG+AGG | + | 41772:1731-1750 | MS.gene66289:CDS | 30.0% |
| ! | TGACTTTTATTAAAGACCAG+AGG | + | 41772:4200-4219 | MS.gene66289:intron | 30.0% |
| ! | TGCACATTGTATTTTTCACA+TGG | - | 41772:2591-2610 | None:intergenic | 30.0% |
| ! | TTAGTACTAGTTTCTGAAGA+TGG | - | 41772:1842-1861 | None:intergenic | 30.0% |
| ! | TTTTCAATACCATAATCCCA+TGG | + | 41772:2329-2348 | MS.gene66289:intron | 30.0% |
| ! | TTTTCTGTTCTTCTCTCATA+TGG | + | 41772:4844-4863 | MS.gene66289:intron | 30.0% |
| ! | TTTTCTTTTCTTCACTCTCA+AGG | + | 41772:4637-4656 | MS.gene66289:CDS | 30.0% |
| !! | AAAATAGTGGATTGAAAAGG+TGG | - | 41772:4828-4847 | None:intergenic | 30.0% |
| !! | AAAGCATTGTTAACATTTGC+AGG | - | 41772:5155-5174 | None:intergenic | 30.0% |
| !! | AAATAGTGGATTGAAAAGGT+GGG | - | 41772:4827-4846 | None:intergenic | 30.0% |
| !! | CAGAAAATAGTGGATTGAAA+AGG | - | 41772:4831-4850 | None:intergenic | 30.0% |
| !! | GGAGTATTGACATTAAAATC+AGG | - | 41772:3281-3300 | None:intergenic | 30.0% |
| !! | GTATCTAAGACATTTTCTGT+GGG | + | 41772:2974-2993 | MS.gene66289:intron | 30.0% |
| !! | TATCTAAGACATTTTCTGTG+GGG | + | 41772:2975-2994 | MS.gene66289:intron | 30.0% |
| !! | TGTATCTAAGACATTTTCTG+TGG | + | 41772:2973-2992 | MS.gene66289:intron | 30.0% |
| !! | TTTTAAGGGAAAAATCGTGT+TGG | - | 41772:3319-3338 | None:intergenic | 30.0% |
| !!! | ATTGTTTTAATCCAATCCCT+TGG | - | 41772:4050-4069 | None:intergenic | 30.0% |
| !!! | GTTGTCTCATGTTTTAGTTA+AGG | - | 41772:4082-4101 | None:intergenic | 30.0% |
| AAACATGATGCATCAGTTAC+AGG | + | 41772:1244-1263 | MS.gene66289:CDS | 35.0% | |
| AATATATACCACATACCGTG+TGG | - | 41772:1601-1620 | None:intergenic | 35.0% | |
| AATGTACTCCATAAAGATGC+AGG | + | 41772:1094-1113 | MS.gene66289:CDS | 35.0% | |
| ACAATCCAATCAAGAATGGT+AGG | + | 41772:1683-1702 | MS.gene66289:CDS | 35.0% | |
| AGCTCACTTGATTGAACTAA+AGG | - | 41772:3470-3489 | None:intergenic | 35.0% | |
| ATATGAAATCAACTACGGGA+AGG | + | 41772:712-731 | MS.gene66289:CDS | 35.0% | |
| CACATCAATGTTGTGTACAA+AGG | + | 41772:1165-1184 | MS.gene66289:CDS | 35.0% | |
| CAGAAAACTCCAAATTTGTG+AGG | + | 41772:1768-1787 | MS.gene66289:CDS | 35.0% | |
| CATGACTGCTTTGTAAACAA+TGG | + | 41772:1011-1030 | MS.gene66289:CDS | 35.0% | |
| CATGGATGAACTTAATAAGG+AGG | + | 41772:5465-5484 | MS.gene66289:CDS | 35.0% | |
| CATTGTTTACAAAGCAGTCA+TGG | - | 41772:1013-1032 | None:intergenic | 35.0% | |
| CTCCTTATTAAGTTCATCCA+TGG | - | 41772:5467-5486 | None:intergenic | 35.0% | |
| GAAACTAGTACTAAGCAATC+AGG | + | 41772:1848-1867 | MS.gene66289:CDS | 35.0% | |
| GAGAGAAGAACAGAAAATAG+TGG | - | 41772:4841-4860 | None:intergenic | 35.0% | |
| GAGGATAATTTGAACTGCTT+AGG | + | 41772:2001-2020 | MS.gene66289:CDS | 35.0% | |
| GAGTAACTGAACATCATGTT+TGG | + | 41772:3054-3073 | MS.gene66289:intron | 35.0% | |
| GAGTGAAGAAAAGAAAAGCA+AGG | - | 41772:4634-4653 | None:intergenic | 35.0% | |
| GATATACTTCCCAGGTTATT+CGG | - | 41772:2712-2731 | None:intergenic | 35.0% | |
| GGATAATTTGAACTGCTTAG+GGG | + | 41772:2003-2022 | MS.gene66289:CDS | 35.0% | |
| GGTGAAAAGTAGTGAAAGTT+TGG | + | 41772:1880-1899 | MS.gene66289:CDS | 35.0% | |
| GTTGAGCTTCTGAATAAAAC+CGG | + | 41772:2226-2245 | MS.gene66289:CDS | 35.0% | |
| TAAAGTTCAAAAGCAGTTGG+AGG | + | 41772:5705-5724 | MS.gene66289:CDS | 35.0% | |
| TAATCTCTAATCCAAGCAGA+GGG | + | 41772:5417-5436 | MS.gene66289:intron | 35.0% | |
| TCAAGACTCATTGTTTGTAG+CGG | - | 41772:891-910 | None:intergenic | 35.0% | |
| TCATATGAGACTATACTTGC+TGG | + | 41772:5263-5282 | MS.gene66289:CDS | 35.0% | |
| TGCCATGGATGAACTTAATA+AGG | + | 41772:5462-5481 | MS.gene66289:CDS | 35.0% | |
| TGGGAAAAGTAGTATTAGGA+TGG | - | 41772:3640-3659 | None:intergenic | 35.0% | |
| TGGTGTAACAAGAACCATTT+CGG | - | 41772:1581-1600 | None:intergenic | 35.0% | |
| TTAATCTCTAATCCAAGCAG+AGG | + | 41772:5416-5435 | MS.gene66289:intron | 35.0% | |
| ! | ACATTTTTGTTGCATCTTCG+TGG | + | 41772:2458-2477 | MS.gene66289:intron | 35.0% |
| ! | ACTGTCGAATCAGAACTTTT+AGG | - | 41772:1122-1141 | None:intergenic | 35.0% |
| ! | AGGATGTGGGTTATGAATAT+GGG | + | 41772:925-944 | MS.gene66289:CDS | 35.0% |
| ! | ATTATCCTCTCTGACTTTTG+GGG | - | 41772:1990-2009 | None:intergenic | 35.0% |
| ! | CATGCTTTTCTTACAGACAA+AGG | - | 41772:741-760 | None:intergenic | 35.0% |
| ! | CATGTAGTGGAAAGTAAACA+AGG | - | 41772:1381-1400 | None:intergenic | 35.0% |
| ! | TATATGGAAGCTTTGTGTTC+CGG | + | 41772:2187-2206 | MS.gene66289:CDS | 35.0% |
| ! | TTTAGGATCCTGCATCTTTA+TGG | - | 41772:1105-1124 | None:intergenic | 35.0% |
| !! | ATCATGCCACTTTCTTTCTT+TGG | + | 41772:4772-4791 | MS.gene66289:intron | 35.0% |
| !! | ATCTAAGACATTTTCTGTGG+GGG | + | 41772:2976-2995 | MS.gene66289:intron | 35.0% |
| !! | CAACTGCTTTTGAACTTTAG+CGG | - | 41772:5704-5723 | None:intergenic | 35.0% |
| !! | GCATCAAAAAGTCTTTTTCG+TGG | - | 41772:3180-3199 | None:intergenic | 35.0% |
| !! | TAAGCAATCAGGCTTGTTTT+CGG | + | 41772:1859-1878 | MS.gene66289:CDS | 35.0% |
| !! | TCATGCCACTTTCTTTCTTT+GGG | + | 41772:4773-4792 | MS.gene66289:intron | 35.0% |
| !!! | ACATAGAACAAACTGGCTTT+TGG | - | 41772:3027-3046 | None:intergenic | 35.0% |
| !!! | ATTTTTTTTGCCTCGACTTG+CGG | - | 41772:5129-5148 | None:intergenic | 35.0% |
| AAAAAGCTGCTGATGAGAGA+AGG | + | 41772:5635-5654 | MS.gene66289:CDS | 40.0% | |
| AAAAGAGGGAGAAAGAGCAA+AGG | - | 41772:358-377 | None:intergenic | 40.0% | |
| AACATCTCTATGTCTGGACT+CGG | - | 41772:676-695 | None:intergenic | 40.0% | |
| AACGAGAATAAGTTCGTCAC+CGG | - | 41772:2209-2228 | None:intergenic | 40.0% | |
| AGATTGTGGAGAGATTCAAC+TGG | - | 41772:5029-5048 | None:intergenic | 40.0% | |
| AGTCCAGACATAGAGATGTT+AGG | + | 41772:676-695 | MS.gene66289:CDS | 40.0% | |
| AGTGGACAAAACATGTTCCA+AGG | + | 41772:4030-4049 | MS.gene66289:intron | 40.0% | |
| ATGGTTCTTGTTACACCACA+CGG | + | 41772:1583-1602 | MS.gene66289:intron | 40.0% | |
| CAAAACATGTTCCAAGGGAT+TGG | + | 41772:4036-4055 | MS.gene66289:intron | 40.0% | |
| CGCTAAAGTTCAAAAGCAGT+TGG | + | 41772:5702-5721 | MS.gene66289:CDS | 40.0% | |
| CTTAAGCTAACACACGTGAA+TGG | - | 41772:3257-3276 | None:intergenic | 40.0% | |
| GAGCAAAGGTAAACCTTTGA+AGG | - | 41772:344-363 | None:intergenic | 40.0% | |
| GGGGTAGTTCACAAAACAAT+AGG | - | 41772:4280-4299 | None:intergenic | 40.0% | |
| GTCATCCCAAAAGAGATGAT+TGG | + | 41772:784-803 | MS.gene66289:CDS | 40.0% | |
| GTGAATCGTCTTGTATGTGA+AGG | + | 41772:2148-2167 | MS.gene66289:CDS | 40.0% | |
| GTGGACAAAACATGTTCCAA+GGG | + | 41772:4031-4050 | MS.gene66289:intron | 40.0% | |
| TAATTTGAACTGCTTAGGGG+AGG | + | 41772:2006-2025 | MS.gene66289:CDS | 40.0% | |
| TAGTCTCATATGATTCCCTG+CGG | - | 41772:5256-5275 | None:intergenic | 40.0% | |
| TCCACTACAGAATGTGTTCT+GGG | - | 41772:828-847 | None:intergenic | 40.0% | |
| TCTACAGAAAATATCTGCGG+AGG | + | 41772:615-634 | MS.gene66289:intron | 40.0% | |
| TCTGCTCAAGTGAGAAAGAA+TGG | + | 41772:2046-2065 | MS.gene66289:CDS | 40.0% | |
| TCTGTTCTTCTCTCATATGG+AGG | + | 41772:4847-4866 | MS.gene66289:intron | 40.0% | |
| TCTTCGTGGCATACCTTAAA+TGG | + | 41772:2472-2491 | MS.gene66289:intron | 40.0% | |
| TCTTGATGTTACAAGCATGC+AGG | + | 41772:905-924 | MS.gene66289:CDS | 40.0% | |
| TGTAATTTGGGGACTTGACT+CGG | - | 41772:1147-1166 | None:intergenic | 40.0% | |
| TGTTGGCACAAACTTAAGGT+CGG | - | 41772:3302-3321 | None:intergenic | 40.0% | |
| TTCCACTACAGAATGTGTTC+TGG | - | 41772:829-848 | None:intergenic | 40.0% | |
| TTGCTGGAATTCGAAAAGAC+AGG | + | 41772:5279-5298 | MS.gene66289:CDS | 40.0% | |
| TTGTGAGATGTGGAAGATTG+TGG | - | 41772:5043-5062 | None:intergenic | 40.0% | |
| TTTAATAACCCAGGCCTGTT+TGG | - | 41772:2632-2651 | None:intergenic | 40.0% | |
| ! | AAAGACTTTTTGATGCCCTG+AGG | + | 41772:3184-3203 | MS.gene66289:intron | 40.0% |
| ! | AACGGTTTGCTTCTCACATT+TGG | - | 41772:1047-1066 | None:intergenic | 40.0% |
| ! | AACGTGCCAATCATCTCTTT+TGG | - | 41772:793-812 | None:intergenic | 40.0% |
| ! | AATTGAAGCTACGGTGCTAA+AGG | + | 41772:3223-3242 | MS.gene66289:intron | 40.0% |
| ! | ACGTGCCAATCATCTCTTTT+GGG | - | 41772:792-811 | None:intergenic | 40.0% |
| ! | AGCGATCCGAATTTTACCAT+GGG | + | 41772:4471-4490 | MS.gene66289:intron | 40.0% |
| ! | ATCGTGTTGGCACAAACTTA+AGG | - | 41772:3306-3325 | None:intergenic | 40.0% |
| ! | ATTGAAGCTACGGTGCTAAA+GGG | + | 41772:3224-3243 | MS.gene66289:intron | 40.0% |
| ! | CAAAGGTAAACCTTTGAAGG+AGG | - | 41772:341-360 | None:intergenic | 40.0% |
| ! | CAGGATGTGGGTTATGAATA+TGG | + | 41772:924-943 | MS.gene66289:CDS | 40.0% |
| ! | CAGTAGTTTGTGTTACTCTC+GGG | - | 41772:2121-2140 | None:intergenic | 40.0% |
| ! | CCAGTAGTTTGTGTTACTCT+CGG | - | 41772:2122-2141 | None:intergenic | 40.0% |
| ! | CTAGTTTCTGAAGATGGCTT+TGG | - | 41772:1836-1855 | None:intergenic | 40.0% |
| ! | CTTGAAGCGTTATCATGTAG+TGG | - | 41772:1394-1413 | None:intergenic | 40.0% |
| ! | TCTTTCTTTGGGGGTAGTTA+GGG | + | 41772:4784-4803 | MS.gene66289:intron | 40.0% |
| ! | TGCTGTCAGGCATCTTTTAA+GGG | - | 41772:3333-3352 | None:intergenic | 40.0% |
| ! | TTCTTTCTTTGGGGGTAGTT+AGG | + | 41772:4783-4802 | MS.gene66289:intron | 40.0% |
| ! | TTGCTTCTCACATTTGGCTT+CGG | - | 41772:1041-1060 | None:intergenic | 40.0% |
| ! | TTTTCAGCCATGCAGAAAAG+AGG | + | 41772:2865-2884 | MS.gene66289:CDS | 40.0% |
| ! | TTTTGAACTTTAGCGGTCCT+AGG | - | 41772:5697-5716 | None:intergenic | 40.0% |
| !! | ACCATTTCTAGCATTGGTTC+TGG | - | 41772:2092-2111 | None:intergenic | 40.0% |
| !! | AGGACAACCATTTCTAGCAT+TGG | - | 41772:2098-2117 | None:intergenic | 40.0% |
| !! | ATCGCTTTTACCGAATAACC+TGG | + | 41772:2699-2718 | MS.gene66289:intron | 40.0% |
| !! | ATGCCACTTTCTTTCTTTGG+GGG | + | 41772:4775-4794 | MS.gene66289:intron | 40.0% |
| !! | CATGCCACTTTCTTTCTTTG+GGG | + | 41772:4774-4793 | MS.gene66289:intron | 40.0% |
| !! | TCGCTTTTACCGAATAACCT+GGG | + | 41772:2700-2719 | MS.gene66289:intron | 40.0% |
| AAGGAGGATCCAGTTTCTGA+AGG | - | 41772:325-344 | None:intergenic | 45.0% | |
| AAGTTCGAAAGCAACCACCT+AGG | + | 41772:5677-5696 | MS.gene66289:CDS | 45.0% | |
| AATGCAATTTGGTCCGTGGA+CGG | - | 41772:2781-2800 | None:intergenic | 45.0% | |
| ACTCATTGTTTGTAGCGGCT+TGG | - | 41772:886-905 | None:intergenic | 45.0% | |
| AGAGATACTACTTCAGCCTC+AGG | - | 41772:3203-3222 | None:intergenic | 45.0% | |
| ATTTGTGCACATGTGCTGTC+AGG | - | 41772:3346-3365 | None:intergenic | 45.0% | |
| CACTTTAGCACCGTATCTTC+TGG | + | 41772:2297-2316 | MS.gene66289:intron | 45.0% | |
| CAGCACAAAGATTTCTCAGG+AGG | + | 41772:3611-3630 | MS.gene66289:intron | 45.0% | |
| CCAAGCCTACCATTCTTGAT+TGG | - | 41772:1691-1710 | None:intergenic | 45.0% | |
| CCAATCAAGAATGGTAGGCT+TGG | + | 41772:1688-1707 | MS.gene66289:CDS | 45.0% | |
| CCACTACAGAATGTGTTCTG+GGG | - | 41772:827-846 | None:intergenic | 45.0% | |
| CCGAGAGTAACACAAACTAC+TGG | + | 41772:2119-2138 | MS.gene66289:CDS | 45.0% | |
| CTACCCCCAAAGAAAGAAAG+TGG | - | 41772:4781-4800 | None:intergenic | 45.0% | |
| CTATCTCCAGCATGAATCCT+CGG | - | 41772:1932-1951 | None:intergenic | 45.0% | |
| GAAACTGGATCCTCCTTCAA+AGG | + | 41772:328-347 | MS.gene66289:CDS | 45.0% | |
| GAAGATAGTGATGCATGCCA+TGG | + | 41772:5447-5466 | MS.gene66289:CDS | 45.0% | |
| GAGATACTACTTCAGCCTCA+GGG | - | 41772:3202-3221 | None:intergenic | 45.0% | |
| GAGCCTAACATCTCTATGTC+TGG | - | 41772:682-701 | None:intergenic | 45.0% | |
| GATTCATGCTGGAGATAGTG+TGG | + | 41772:1934-1953 | MS.gene66289:CDS | 45.0% | |
| GCCAGAACCAATGCTAGAAA+TGG | + | 41772:2088-2107 | MS.gene66289:CDS | 45.0% | |
| GGGTTATGAATATGGGCCTA+TGG | + | 41772:932-951 | MS.gene66289:CDS | 45.0% | |
| GGTCTTCAGCTTTCCTCTTT+CGG | - | 41772:5609-5628 | None:intergenic | 45.0% | |
| GTGCAGCACAAAGATTTCTC+AGG | + | 41772:3507-3526 | MS.gene66289:intron | 45.0% | |
| GTTACAAGCATGCAGGATGT+GGG | + | 41772:912-931 | MS.gene66289:CDS | 45.0% | |
| TGTGAGAAGCAAACCGTTAG+AGG | + | 41772:1049-1068 | MS.gene66289:CDS | 45.0% | |
| TGTTACAAGCATGCAGGATG+TGG | + | 41772:911-930 | MS.gene66289:CDS | 45.0% | |
| TTAGCACCGTATCTTCTGGA+AGG | + | 41772:2301-2320 | MS.gene66289:intron | 45.0% | |
| TTGTTACACCACACGGTATG+TGG | + | 41772:1590-1609 | MS.gene66289:intron | 45.0% | |
| ! | CAGCGATCCGAATTTTACCA+TGG | + | 41772:4470-4489 | MS.gene66289:intron | 45.0% |
| ! | CATCAGCAGCTTTTTGCCTT+CGG | - | 41772:5630-5649 | None:intergenic | 45.0% |
| ! | GTGCTGTCAGGCATCTTTTA+AGG | - | 41772:3334-3353 | None:intergenic | 45.0% |
| ! | TAGTTTGTGTTACTCTCGGG+AGG | - | 41772:2118-2137 | None:intergenic | 45.0% |
| ! | TCCGAATTTTACCATGGGCT+CGG | + | 41772:4476-4495 | MS.gene66289:intron | 45.0% |
| !! | ACCTTGAAAGGAAGCATCTG+CGG | - | 41772:5066-5085 | None:intergenic | 45.0% |
| !! | AGATGGCTTTGGAGTGCATA+CGG | - | 41772:1825-1844 | None:intergenic | 45.0% |
| !! | TTGGCTCTGCCTCACAAATT+TGG | - | 41772:1780-1799 | None:intergenic | 45.0% |
| !!! | AGTTTTTTTAAATATATTTT+TGG | - | 41772:4346-4365 | None:intergenic | 5.0% |
| !!! | GTTTTTTTAAATATATTTTT+GGG | - | 41772:4345-4364 | None:intergenic | 5.0% |
| AATTTGAAAGCCCGAGCCCA+TGG | - | 41772:4490-4509 | None:intergenic | 50.0% | |
| ACCAGGAGAAGAAAATCCGC+AGG | + | 41772:5237-5256 | MS.gene66289:intron | 50.0% | |
| ACCGCAGATGCTTCCTTTCA+AGG | + | 41772:5062-5081 | MS.gene66289:intron | 50.0% | |
| ACTACCGAGCCTTCAGAAAC+TGG | + | 41772:313-332 | MS.gene66289:CDS | 50.0% | |
| AGAAAGCTGCAGACCGAAAG+AGG | + | 41772:5593-5612 | MS.gene66289:CDS | 50.0% | |
| AGAGGAAAGCTGAAGACCGA+AGG | + | 41772:5611-5630 | MS.gene66289:CDS | 50.0% | |
| AGATAGAGAGCTACTCCCTC+TGG | - | 41772:4219-4238 | None:intergenic | 50.0% | |
| AGCTCGAAAGCAGAAAGCTG+AGG | + | 41772:5498-5517 | MS.gene66289:CDS | 50.0% | |
| ATCTCTATGTCTGGACTCGG+TGG | - | 41772:673-692 | None:intergenic | 50.0% | |
| ATTGGCCCAAAACTCGACCT+GGG | + | 41772:5097-5116 | MS.gene66289:intron | 50.0% | |
| CAAGTGAGCTACCTATCCCA+GGG | + | 41772:3480-3499 | MS.gene66289:intron | 50.0% | |
| CACTCCTGCTTGTCATCCAT+AGG | - | 41772:951-970 | None:intergenic | 50.0% | |
| CCAGGAGAAGAAAATCCGCA+GGG | + | 41772:5238-5257 | MS.gene66289:intron | 50.0% | |
| CCCCAGAACACATTCTGTAG+TGG | + | 41772:824-843 | MS.gene66289:CDS | 50.0% | |
| CCCGAGCCCATGGTAAAATT+CGG | - | 41772:4480-4499 | None:intergenic | 50.0% | |
| CTTAACCAGTGCAGCCAAAC+AGG | + | 41772:2615-2634 | MS.gene66289:intron | 50.0% | |
| GAGCAATGCAATTTGGTCCG+TGG | - | 41772:2785-2804 | None:intergenic | 50.0% | |
| TATTGGCCCAAAACTCGACC+TGG | + | 41772:5096-5115 | MS.gene66289:intron | 50.0% | |
| TCAAGTGAGCTACCTATCCC+AGG | + | 41772:3479-3498 | MS.gene66289:intron | 50.0% | |
| TGAACTTTAGCGGTCCTAGG+TGG | - | 41772:5694-5713 | None:intergenic | 50.0% | |
| ! | CCGAATTTTACCATGGGCTC+GGG | + | 41772:4477-4496 | MS.gene66289:intron | 50.0% |
| ! | GGATCCAGTTTCTGAAGGCT+CGG | - | 41772:320-339 | None:intergenic | 50.0% |
| ! | GGCTCGGTAGTATAATGACC+CGG | - | 41772:304-323 | None:intergenic | 50.0% |
| ! | GTTGAAATGAGCACCGTCCA+CGG | + | 41772:2765-2784 | MS.gene66289:CDS | 50.0% |
| ! | TCCTGGGAGAAGCGACATTT+TGG | - | 41772:1799-1818 | None:intergenic | 50.0% |
| ! | TTTGGCCCAGGTCGAGTTTT+GGG | - | 41772:5105-5124 | None:intergenic | 50.0% |
| ! | TTTTGGCCCAGGTCGAGTTT+TGG | - | 41772:5106-5125 | None:intergenic | 50.0% |
| !! | CATTTTCAAGGAGCCAACCG+AGG | + | 41772:1912-1931 | MS.gene66289:CDS | 50.0% |
| !! | TTTGCCTCGACTTGCGGTTT+TGG | - | 41772:5123-5142 | None:intergenic | 50.0% |
| !!! | CTGGCTTTTGGAGTTCAACC+AGG | - | 41772:3015-3034 | None:intergenic | 50.0% |
| AACTTGCCTGCTGCAGCCAT+GGG | - | 41772:2348-2367 | None:intergenic | 55.0% | |
| AGCCAACCGAGGATTCATGC+TGG | + | 41772:1923-1942 | MS.gene66289:CDS | 55.0% | |
| CATAATCCCATGGCTGCAGC+AGG | + | 41772:2339-2358 | MS.gene66289:intron | 55.0% | |
| CTCCAGCATGAATCCTCGGT+TGG | - | 41772:1928-1947 | None:intergenic | 55.0% | |
| CTGCTGCAGCCATGGGATTA+TGG | - | 41772:2341-2360 | None:intergenic | 55.0% | |
| CTTCAGCAATGCCCTCTGCT+TGG | - | 41772:5431-5450 | None:intergenic | 55.0% | |
| GACTGCCCCAAAAGTCAGAG+AGG | + | 41772:1982-2001 | MS.gene66289:CDS | 55.0% | |
| GCATCTGCGGTTGTGAGATG+TGG | - | 41772:5053-5072 | None:intergenic | 55.0% | |
| GGAGTGCATACGGAGATCCT+GGG | - | 41772:1815-1834 | None:intergenic | 55.0% | |
| GGGGGAACAGATCTTGTTCC+TGG | + | 41772:2994-3013 | MS.gene66289:intron | 55.0% | |
| TATCTGCGGAGGTGACTCTG+TGG | + | 41772:626-645 | MS.gene66289:CDS | 55.0% | |
| TGGAGTGCATACGGAGATCC+TGG | - | 41772:1816-1835 | None:intergenic | 55.0% | |
| TGGGCCTATGGATGACAAGC+AGG | + | 41772:944-963 | MS.gene66289:CDS | 55.0% | |
| TTTGTGCTGCACCTCACCCT+GGG | - | 41772:3499-3518 | None:intergenic | 55.0% | |
| ! | CCCTGCGGATTTTCTTCTCC+TGG | - | 41772:5241-5260 | None:intergenic | 55.0% |
| ! | CTGCACGCCTCTTTTCTGCA+TGG | - | 41772:2875-2894 | None:intergenic | 55.0% |
| ! | GCCAAAATGTCGCTTCTCCC+AGG | + | 41772:1795-1814 | MS.gene66289:CDS | 55.0% |
| !! | AGCATTGGTTCTGGCAGCAG+AGG | - | 41772:2083-2102 | None:intergenic | 55.0% |
| CAGTGCAGCCAAACAGGCCT+GGG | + | 41772:2621-2640 | MS.gene66289:intron | 60.0% | |
| CTTTGTGCTGCACCTCACCC+TGG | - | 41772:3500-3519 | None:intergenic | 60.0% | |
| GAACTTGCCTGCTGCAGCCA+TGG | - | 41772:2349-2368 | None:intergenic | 60.0% | |
| GAGCTACCTATCCCAGGGTG+AGG | + | 41772:3485-3504 | MS.gene66289:intron | 60.0% | |
| TGGGCCAAAACCGCAAGTCG+AGG | + | 41772:5116-5135 | MS.gene66289:intron | 60.0% | |
| !! | TCGACTTGCGGTTTTGGCCC+AGG | - | 41772:5117-5136 | None:intergenic | 60.0% |
| CCAGGCCTGTTTGGCTGCAC+TGG | - | 41772:2623-2642 | None:intergenic | 65.0% | |
| CCAGTGCAGCCAAACAGGCC+TGG | + | 41772:2620-2639 | MS.gene66289:intron | 65.0% | |
| GCTGCACCTCACCCTGGGAT+AGG | - | 41772:3494-3513 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 41772 | gene | 295 | 5732 | 295 | ID=MS.gene66289 |
| 41772 | mRNA | 295 | 5732 | 295 | ID=MS.gene66289.t1;Parent=MS.gene66289 |
| 41772 | exon | 295 | 349 | 295 | ID=MS.gene66289.t1.exon1;Parent=MS.gene66289.t1 |
| 41772 | CDS | 295 | 349 | 295 | ID=cds.MS.gene66289.t1;Parent=MS.gene66289.t1 |
| 41772 | exon | 622 | 1265 | 622 | ID=MS.gene66289.t1.exon2;Parent=MS.gene66289.t1 |
| 41772 | CDS | 622 | 1265 | 622 | ID=cds.MS.gene66289.t1;Parent=MS.gene66289.t1 |
| 41772 | exon | 1650 | 2285 | 1650 | ID=MS.gene66289.t1.exon3;Parent=MS.gene66289.t1 |
| 41772 | CDS | 1650 | 2285 | 1650 | ID=cds.MS.gene66289.t1;Parent=MS.gene66289.t1 |
| 41772 | exon | 2762 | 2927 | 2762 | ID=MS.gene66289.t1.exon4;Parent=MS.gene66289.t1 |
| 41772 | CDS | 2762 | 2927 | 2762 | ID=cds.MS.gene66289.t1;Parent=MS.gene66289.t1 |
| 41772 | exon | 4600 | 4658 | 4600 | ID=MS.gene66289.t1.exon5;Parent=MS.gene66289.t1 |
| 41772 | CDS | 4600 | 4658 | 4600 | ID=cds.MS.gene66289.t1;Parent=MS.gene66289.t1 |
| 41772 | exon | 5242 | 5337 | 5242 | ID=MS.gene66289.t1.exon6;Parent=MS.gene66289.t1 |
| 41772 | CDS | 5242 | 5337 | 5242 | ID=cds.MS.gene66289.t1;Parent=MS.gene66289.t1 |
| 41772 | exon | 5436 | 5732 | 5436 | ID=MS.gene66289.t1.exon7;Parent=MS.gene66289.t1 |
| 41772 | CDS | 5436 | 5732 | 5436 | ID=cds.MS.gene66289.t1;Parent=MS.gene66289.t1 |
| Gene Sequence |
| Protein sequence |
