Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66838.t1 | XP_003603879.2 | 97.5 | 81 | 1 | 1 | 1 | 81 | 1 | 80 | 1.70E-35 | 159.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66838.t1 | G7J6H1 | 97.5 | 81 | 1 | 1 | 1 | 81 | 1 | 80 | 1.2e-35 | 159.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051452 | MS.gene66838 | 0.804622 | 1.98E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene66838 | 0.800791 | 1.22E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene66838 | 0.801595 | 8.36E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene66838 | 0.822298 | 2.55E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66838.t1 | MTR_3g116150 | 97.531 | 81 | 1 | 1 | 1 | 81 | 1 | 80 | 4.46e-52 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66838.t1 | AT2G33585 | 67.901 | 81 | 24 | 1 | 1 | 81 | 98 | 176 | 1.72e-35 | 122 |
| MS.gene66838.t1 | AT2G33585 | 74.545 | 55 | 14 | 0 | 1 | 55 | 98 | 152 | 3.82e-26 | 97.1 |
Find 49 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCCTAGCTTATTATCTT+TGG | 0.258975 | 3.4:+99058623 | MS.gene66838:CDS |
| GAGGAAGCAACCTCGCTTCT+TGG | 0.300549 | 3.4:+99058590 | MS.gene66838:CDS |
| ACTCTTCAATGGCGAGTAAC+TGG | 0.320203 | 3.4:+99058509 | None:intergenic |
| ACCGTGACGTCTCTGGTATA+TGG | 0.376623 | 3.4:+99060202 | MS.gene66838:CDS |
| AGGAAGCAACCTCGCTTCTT+GGG | 0.395335 | 3.4:+99058591 | MS.gene66838:CDS |
| ATTCCATGGGGCTATATGAT+AGG | 0.414077 | 3.4:+99059836 | MS.gene66838:CDS |
| TGTTTGCAAGGGAGAGAGAG+TGG | 0.452389 | 3.4:+99060100 | MS.gene66838:CDS |
| GAGGAACGAACTTGAGGATC+AGG | 0.455383 | 3.4:-99058748 | None:intergenic |
| GTTTGCAAGGGAGAGAGAGT+GGG | 0.462846 | 3.4:+99060101 | MS.gene66838:CDS |
| CCGTGACGTCTCTGGTATAT+GGG | 0.468105 | 3.4:+99060203 | MS.gene66838:CDS |
| GGTATATGGGAGTGGGCTGT+AGG | 0.468726 | 3.4:+99060216 | MS.gene66838:CDS |
| CTCTCCCTTGCAAACATCCA+TGG | 0.469648 | 3.4:-99060093 | None:intergenic |
| CGAACTTGAGGATCAGGAAC+AGG | 0.471583 | 3.4:-99058742 | None:intergenic |
| CGAGTTTCAACATAGCGAAA+AGG | 0.472893 | 3.4:-99058715 | None:intergenic |
| ACGTCTCTGGTATATGGGAG+TGG | 0.474946 | 3.4:+99060208 | MS.gene66838:CDS |
| CTCGCTTCTTGGGTTGTCGC+CGG | 0.477421 | 3.4:+99058601 | MS.gene66838:CDS |
| TGATCCAAAGATAATAAGCT+AGG | 0.483025 | 3.4:-99058627 | None:intergenic |
| TGAATTGCAGCACGATTCCA+TGG | 0.483385 | 3.4:+99059822 | MS.gene66838:intron |
| TTGCGTGACCGTGACGTCTC+TGG | 0.488663 | 3.4:+99060195 | MS.gene66838:CDS |
| TTTGCAAGGGAGAGAGAGTG+GGG | 0.493744 | 3.4:+99060102 | MS.gene66838:CDS |
| AAGATAATAAGCTAGGGTTC+CGG | 0.497881 | 3.4:-99058620 | None:intergenic |
| AGATCAAAGAAGTGGTTCCA+TGG | 0.503707 | 3.4:+99060076 | MS.gene66838:intron |
| TCGCGTTTGAGATCTTGATC+AGG | 0.521692 | 3.4:-99058652 | None:intergenic |
| ATGGGAGTGGGCTGTAGGAG+TGG | 0.536518 | 3.4:+99060221 | MS.gene66838:CDS |
| TGGTTCCATGGATGTTTGCA+AGG | 0.538101 | 3.4:+99060088 | MS.gene66838:CDS |
| GTCGTTCGTGAACAATTCGA+TGG | 0.543665 | 3.4:+99058555 | MS.gene66838:CDS |
| GAATTGCAGCACGATTCCAT+GGG | 0.549021 | 3.4:+99059823 | MS.gene66838:intron |
| CGTCTCTGGTATATGGGAGT+GGG | 0.549081 | 3.4:+99060209 | MS.gene66838:CDS |
| CCCTCACTCATTCTCACTTG+CGG | 0.560729 | 3.4:-99060168 | None:intergenic |
| TTTAAAGTGAAAGGGGTAGA+GGG | 0.561358 | 3.4:+99060135 | MS.gene66838:CDS |
| AAAGGGGTAGAGGGAAAAGT+TGG | 0.567124 | 3.4:+99060144 | MS.gene66838:CDS |
| CATGGGGCTATATGATAGGA+TGG | 0.567997 | 3.4:+99059840 | MS.gene66838:CDS |
| GATCCAAAGATAATAAGCTA+GGG | 0.581242 | 3.4:-99058626 | None:intergenic |
| TTCGTGAACAATTCGATGGG+TGG | 0.584430 | 3.4:+99058559 | MS.gene66838:CDS |
| CCCATATACCAGAGACGTCA+CGG | 0.587462 | 3.4:-99060203 | None:intergenic |
| TATTCAAAAGATCAAAGAAG+TGG | 0.589305 | 3.4:+99060068 | MS.gene66838:intron |
| GAAGAACACTCGGCAACGCA+AGG | 0.595860 | 3.4:+99058533 | MS.gene66838:CDS |
| TCGTTCGTGAACAATTCGAT+GGG | 0.609126 | 3.4:+99058556 | MS.gene66838:CDS |
| AATTCGATGGGTGGTCTGAG+AGG | 0.619195 | 3.4:+99058568 | MS.gene66838:CDS |
| TCGATGGGTGGTCTGAGAGG+AGG | 0.620565 | 3.4:+99058571 | MS.gene66838:CDS |
| GGTTCCATGGATGTTTGCAA+GGG | 0.622578 | 3.4:+99060089 | MS.gene66838:CDS |
| CCGCAAGTGAGAATGAGTGA+GGG | 0.623511 | 3.4:+99060168 | MS.gene66838:CDS |
| CATCCTATCATATAGCCCCA+TGG | 0.639997 | 3.4:-99059839 | None:intergenic |
| CGCAAGTGAGAATGAGTGAG+GGG | 0.641444 | 3.4:+99060169 | MS.gene66838:CDS |
| TCCGCAAGTGAGAATGAGTG+AGG | 0.648199 | 3.4:+99060167 | MS.gene66838:CDS |
| CGGCGACAACCCAAGAAGCG+AGG | 0.662090 | 3.4:-99058600 | None:intergenic |
| ATAGCGAAAAGGATCATCAG+AGG | 0.666816 | 3.4:-99058704 | None:intergenic |
| AGTAACTGGAGAAGAACACT+CGG | 0.697006 | 3.4:+99058523 | MS.gene66838:CDS |
| AATTGCAGCACGATTCCATG+GGG | 0.704355 | 3.4:+99059824 | MS.gene66838:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAATATATTTTAATA+TGG | - | chr3.4:99059950-99059969 | None:intergenic | 0.0% |
| !! | AAATTACTTTATATATTGTA+CGG | + | chr3.4:99059132-99059151 | MS.gene66838:intron | 10.0% |
| !! | ATAAGTCAAATATTAAATAA+TGG | + | chr3.4:99059544-99059563 | MS.gene66838:intron | 10.0% |
| !!! | ACATATTTTCAATAAATTAA+TGG | - | chr3.4:99060033-99060052 | None:intergenic | 10.0% |
| !!! | ATATCTTACATTTTAAAAAT+AGG | - | chr3.4:99059205-99059224 | None:intergenic | 10.0% |
| !!! | CATATTTTCAATAAATTAAT+GGG | - | chr3.4:99060032-99060051 | None:intergenic | 10.0% |
| !!! | TAATTTTCAATTTTAATTTC+AGG | + | chr3.4:99058826-99058845 | MS.gene66838:intron | 10.0% |
| !! | TAATAATAGAGAAAAAGAAA+AGG | - | chr3.4:99058797-99058816 | None:intergenic | 15.0% |
| !! | ATTAGGGAAAAATATATTCA+TGG | - | chr3.4:99059987-99060006 | None:intergenic | 20.0% |
| !! | TTAGGGAAAAATATATTCAT+GGG | - | chr3.4:99059986-99060005 | None:intergenic | 20.0% |
| !!! | AAGTTGATTTTAAAGTGAAA+GGG | + | chr3.4:99060127-99060146 | MS.gene66838:CDS | 20.0% |
| ! | AAAAGAAAAGGAAGTAAAAG+TGG | - | chr3.4:99058785-99058804 | None:intergenic | 25.0% |
| ! | AAAATAGTGAAATTTGATCG+GGG | + | chr3.4:99059065-99059084 | MS.gene66838:intron | 25.0% |
| ! | ACAACAAAGACAAATCATTT+AGG | + | chr3.4:99058876-99058895 | MS.gene66838:intron | 25.0% |
| ! | ATAATCACAAGCAATTTAGT+CGG | - | chr3.4:99059893-99059912 | None:intergenic | 25.0% |
| ! | ATACACCAACAATGTAAATT+AGG | - | chr3.4:99059105-99059124 | None:intergenic | 25.0% |
| ! | ATGTAAGATATTATAGACCT+AGG | + | chr3.4:99059214-99059233 | MS.gene66838:intron | 25.0% |
| ! | CAAAATAGTGAAATTTGATC+GGG | + | chr3.4:99059064-99059083 | MS.gene66838:intron | 25.0% |
| ! | CAACAAAGACAAATCATTTA+GGG | + | chr3.4:99058877-99058896 | MS.gene66838:intron | 25.0% |
| ! | CTTTCCTAACTAATATGTAA+AGG | - | chr3.4:99059585-99059604 | None:intergenic | 25.0% |
| ! | GCAAAATAGTGAAATTTGAT+CGG | + | chr3.4:99059063-99059082 | MS.gene66838:intron | 25.0% |
| ! | GTAAACCTAATTTACATTGT+TGG | + | chr3.4:99059097-99059116 | MS.gene66838:intron | 25.0% |
| ! | TATTAGTTAGGAAAGCAAAA+CGG | + | chr3.4:99059590-99059609 | MS.gene66838:intron | 25.0% |
| ! | TATTCAAAAGATCAAAGAAG+TGG | + | chr3.4:99060068-99060087 | MS.gene66838:intron | 25.0% |
| ! | TGTTATAATCACAAGTGTTT+AGG | - | chr3.4:99059478-99059497 | None:intergenic | 25.0% |
| ! | TTAATTACAACTTGTCAAGT+TGG | - | chr3.4:99059015-99059034 | None:intergenic | 25.0% |
| !!! | AGTTGATTTTAAAGTGAAAG+GGG | + | chr3.4:99060128-99060147 | MS.gene66838:CDS | 25.0% |
| !!! | CAATTTTAATTTCAGGTTAC+TGG | + | chr3.4:99058833-99058852 | MS.gene66838:intron | 25.0% |
| !!! | GAAGTTGATTTTAAAGTGAA+AGG | + | chr3.4:99060126-99060145 | MS.gene66838:CDS | 25.0% |
| !!! | TCAAGTTGGTGAAATAATAA+CGG | - | chr3.4:99059001-99059020 | None:intergenic | 25.0% |
| AAAAGTGGTAAGTAAGAAAG+AGG | - | chr3.4:99058770-99058789 | None:intergenic | 30.0% | |
| AAATAGTGAAATTTGATCGG+GGG | + | chr3.4:99059066-99059085 | MS.gene66838:intron | 30.0% | |
| ATATTCATGGGACGTTTAAA+AGG | - | chr3.4:99059974-99059993 | None:intergenic | 30.0% | |
| CAGCACATGATTAAGTAATT+AGG | - | chr3.4:99058929-99058948 | None:intergenic | 30.0% | |
| CAGTCCTTTACATATTAGTT+AGG | + | chr3.4:99059578-99059597 | MS.gene66838:intron | 30.0% | |
| CCACGTGTTTAAAAATGATA+GGG | + | chr3.4:99059650-99059669 | MS.gene66838:intron | 30.0% | |
| GATCCAAAGATAATAAGCTA+GGG | - | chr3.4:99058629-99058648 | None:intergenic | 30.0% | |
| GCAACAAACATAATTGTTAG+AGG | + | chr3.4:99059397-99059416 | MS.gene66838:intron | 30.0% | |
| GTGTTTGGATATGCATAAAA+AGG | + | chr3.4:99059240-99059259 | MS.gene66838:intron | 30.0% | |
| TAATCACAAGCAATTTAGTC+GGG | - | chr3.4:99059892-99059911 | None:intergenic | 30.0% | |
| TCCACGTGTTTAAAAATGAT+AGG | + | chr3.4:99059649-99059668 | MS.gene66838:intron | 30.0% | |
| TGATCCAAAGATAATAAGCT+AGG | - | chr3.4:99058630-99058649 | None:intergenic | 30.0% | |
| TGGTGTACAATCATTATACT+CGG | - | chr3.4:99058963-99058982 | None:intergenic | 30.0% | |
| ! | CTTATTGAAACACACTGTTT+TGG | - | chr3.4:99059529-99059548 | None:intergenic | 30.0% |
| ! | TTGAGTATCACAAATTTGCT+TGG | + | chr3.4:99059267-99059286 | MS.gene66838:intron | 30.0% |
| !! | CGACATTTTGACATTGATTA+GGG | - | chr3.4:99060003-99060022 | None:intergenic | 30.0% |
| AACGGACGTATATACATTGT+TGG | - | chr3.4:99058983-99059002 | None:intergenic | 35.0% | |
| AAGATAATAAGCTAGGGTTC+CGG | - | chr3.4:99058623-99058642 | None:intergenic | 35.0% | |
| AATAGTGAAATTTGATCGGG+GGG | + | chr3.4:99059067-99059086 | MS.gene66838:intron | 35.0% | |
| CAAGTGTTTAGGCTTCATTT+AGG | - | chr3.4:99059467-99059486 | None:intergenic | 35.0% | |
| CTAGAAGTAATACTATGTCG+TGG | + | chr3.4:99059041-99059060 | MS.gene66838:intron | 35.0% | |
| GAACCCTAGCTTATTATCTT+TGG | + | chr3.4:99058623-99058642 | MS.gene66838:CDS | 35.0% | |
| TATAGACCTAGGATTGTGTT+TGG | + | chr3.4:99059225-99059244 | MS.gene66838:intron | 35.0% | |
| ! | CAAGATTACGATTTCTGAGA+AGG | - | chr3.4:99059772-99059791 | None:intergenic | 35.0% |
| ! | GTAAAACTAGAGCATGGTTT+TGG | + | chr3.4:99059315-99059334 | MS.gene66838:intron | 35.0% |
| ! | TTTAAAGTGAAAGGGGTAGA+GGG | + | chr3.4:99060135-99060154 | MS.gene66838:CDS | 35.0% |
| !! | CAGGTTACTGGTTTGATATA+TGG | + | chr3.4:99058845-99058864 | MS.gene66838:intron | 35.0% |
| !! | CCCTATCATTTTTAAACACG+TGG | - | chr3.4:99059653-99059672 | None:intergenic | 35.0% |
| !! | GCGACATTTTGACATTGATT+AGG | - | chr3.4:99060004-99060023 | None:intergenic | 35.0% |
| !!! | AACACACTGTTTTGGAAAGA+CGG | - | chr3.4:99059521-99059540 | None:intergenic | 35.0% |
| !!! | TTTTAAAGTGAAAGGGGTAG+AGG | + | chr3.4:99060134-99060153 | MS.gene66838:CDS | 35.0% |
| AAGAAAGAGGAACGAACTTG+AGG | - | chr3.4:99058757-99058776 | None:intergenic | 40.0% | |
| AGATCAAAGAAGTGGTTCCA+TGG | + | chr3.4:99060076-99060095 | MS.gene66838:intron | 40.0% | |
| AGTAACTGGAGAAGAACACT+CGG | + | chr3.4:99058523-99058542 | MS.gene66838:CDS | 40.0% | |
| ATAGCGAAAAGGATCATCAG+AGG | - | chr3.4:99058707-99058726 | None:intergenic | 40.0% | |
| ATAGTGAAATTTGATCGGGG+GGG | + | chr3.4:99059068-99059087 | MS.gene66838:intron | 40.0% | |
| ATTCAAGCAAGACCACCAAA+AGG | - | chr3.4:99059807-99059826 | None:intergenic | 40.0% | |
| ATTCCATGGGGCTATATGAT+AGG | + | chr3.4:99059836-99059855 | MS.gene66838:CDS | 40.0% | |
| CGAGTTTCAACATAGCGAAA+AGG | - | chr3.4:99058718-99058737 | None:intergenic | 40.0% | |
| GCATATCCAAACACAATCCT+AGG | - | chr3.4:99059234-99059253 | None:intergenic | 40.0% | |
| TCGTTCGTGAACAATTCGAT+GGG | + | chr3.4:99058556-99058575 | MS.gene66838:CDS | 40.0% | |
| TCTTGCTCGAAACGAACATA+AGG | + | chr3.4:99059737-99059756 | MS.gene66838:intron | 40.0% | |
| TTCAAGCAAGACCACCAAAA+GGG | - | chr3.4:99059806-99059825 | None:intergenic | 40.0% | |
| TTCGTCGTAAAACTAGAGCA+TGG | + | chr3.4:99059309-99059328 | MS.gene66838:intron | 40.0% | |
| ! | GTTTTCAGTTTCTCGAAACC+AGG | + | chr3.4:99059672-99059691 | MS.gene66838:intron | 40.0% |
| !!! | AACTAGAGCATGGTTTTGGT+TGG | + | chr3.4:99059319-99059338 | MS.gene66838:intron | 40.0% |
| !!! | GGTTTTGGTTGGATGCATTT+GGG | + | chr3.4:99059330-99059349 | MS.gene66838:intron | 40.0% |
| !!! | TGGTTTTGGTTGGATGCATT+TGG | + | chr3.4:99059329-99059348 | MS.gene66838:intron | 40.0% |
| AAAGGGGTAGAGGGAAAAGT+TGG | + | chr3.4:99060144-99060163 | MS.gene66838:CDS | 45.0% | |
| AATTGCAGCACGATTCCATG+GGG | + | chr3.4:99059824-99059843 | MS.gene66838:intron | 45.0% | |
| ACGGTGCGTTTACATTAGTG+AGG | + | chr3.4:99059609-99059628 | MS.gene66838:intron | 45.0% | |
| CATCCTATCATATAGCCCCA+TGG | - | chr3.4:99059842-99059861 | None:intergenic | 45.0% | |
| CATGGGGCTATATGATAGGA+TGG | + | chr3.4:99059840-99059859 | MS.gene66838:CDS | 45.0% | |
| GAATTGCAGCACGATTCCAT+GGG | + | chr3.4:99059823-99059842 | MS.gene66838:intron | 45.0% | |
| GGTTCCATGGATGTTTGCAA+GGG | + | chr3.4:99060089-99060108 | MS.gene66838:CDS | 45.0% | |
| GTCGTTCGTGAACAATTCGA+TGG | + | chr3.4:99058555-99058574 | MS.gene66838:CDS | 45.0% | |
| TAGTGAAATTTGATCGGGGG+GGG | + | chr3.4:99059069-99059088 | MS.gene66838:intron | 45.0% | |
| TGAATTGCAGCACGATTCCA+TGG | + | chr3.4:99059822-99059841 | MS.gene66838:intron | 45.0% | |
| TGGTTCCATGGATGTTTGCA+AGG | + | chr3.4:99060088-99060107 | MS.gene66838:CDS | 45.0% | |
| TTCGTGAACAATTCGATGGG+TGG | + | chr3.4:99058559-99058578 | MS.gene66838:CDS | 45.0% | |
| ! | TCGCGTTTGAGATCTTGATC+AGG | - | chr3.4:99058655-99058674 | None:intergenic | 45.0% |
| ! | TGGTTGGATGCATTTGGGTT+TGG | + | chr3.4:99059335-99059354 | MS.gene66838:intron | 45.0% |
| ! | TTGACCACGAAGTTCCCTTT+TGG | + | chr3.4:99059789-99059808 | MS.gene66838:intron | 45.0% |
| !! | ACAAACAGCACGTACTGACT+TGG | - | chr3.4:99059713-99059732 | None:intergenic | 45.0% |
| !! | CAAACAGCACGTACTGACTT+GGG | - | chr3.4:99059712-99059731 | None:intergenic | 45.0% |
| AATTCGATGGGTGGTCTGAG+AGG | + | chr3.4:99058568-99058587 | MS.gene66838:CDS | 50.0% | |
| ACCACCAAAAGGGAACTTCG+TGG | - | chr3.4:99059796-99059815 | None:intergenic | 50.0% | |
| ACCGTGACGTCTCTGGTATA+TGG | + | chr3.4:99060202-99060221 | MS.gene66838:CDS | 50.0% | |
| ACGTCTCTGGTATATGGGAG+TGG | + | chr3.4:99060208-99060227 | MS.gene66838:CDS | 50.0% | |
| AGGAAGCAACCTCGCTTCTT+GGG | + | chr3.4:99058591-99058610 | MS.gene66838:CDS | 50.0% | |
| CCCATATACCAGAGACGTCA+CGG | - | chr3.4:99060206-99060225 | None:intergenic | 50.0% | |
| CCCTCACTCATTCTCACTTG+CGG | - | chr3.4:99060171-99060190 | None:intergenic | 50.0% | |
| CCGCAAGTGAGAATGAGTGA+GGG | + | chr3.4:99060168-99060187 | MS.gene66838:CDS | 50.0% | |
| CCGTGACGTCTCTGGTATAT+GGG | + | chr3.4:99060203-99060222 | MS.gene66838:CDS | 50.0% | |
| CGAACTTGAGGATCAGGAAC+AGG | - | chr3.4:99058745-99058764 | None:intergenic | 50.0% | |
| CGCAAGTGAGAATGAGTGAG+GGG | + | chr3.4:99060169-99060188 | MS.gene66838:CDS | 50.0% | |
| CGTCTCTGGTATATGGGAGT+GGG | + | chr3.4:99060209-99060228 | MS.gene66838:CDS | 50.0% | |
| CTCTCCCTTGCAAACATCCA+TGG | - | chr3.4:99060096-99060115 | None:intergenic | 50.0% | |
| GAGGAACGAACTTGAGGATC+AGG | - | chr3.4:99058751-99058770 | None:intergenic | 50.0% | |
| GTTTGCAAGGGAGAGAGAGT+GGG | + | chr3.4:99060101-99060120 | MS.gene66838:CDS | 50.0% | |
| TCCGCAAGTGAGAATGAGTG+AGG | + | chr3.4:99060167-99060186 | MS.gene66838:CDS | 50.0% | |
| TGTTTGCAAGGGAGAGAGAG+TGG | + | chr3.4:99060100-99060119 | MS.gene66838:CDS | 50.0% | |
| TTTGCAAGGGAGAGAGAGTG+GGG | + | chr3.4:99060102-99060121 | MS.gene66838:CDS | 50.0% | |
| ! | ACCACGAAGTTCCCTTTTGG+TGG | + | chr3.4:99059792-99059811 | MS.gene66838:intron | 50.0% |
| AACACGTGGAACGCTGCGTT+TGG | - | chr3.4:99059639-99059658 | None:intergenic | 55.0% | |
| GAAGAACACTCGGCAACGCA+AGG | + | chr3.4:99058533-99058552 | MS.gene66838:CDS | 55.0% | |
| GAGGAAGCAACCTCGCTTCT+TGG | + | chr3.4:99058590-99058609 | MS.gene66838:CDS | 55.0% | |
| ! | TGGGTTGGACTTCTGCAACC+TGG | - | chr3.4:99059693-99059712 | None:intergenic | 55.0% |
| !! | CAGCACGTACTGACTTGGGT+TGG | - | chr3.4:99059708-99059727 | None:intergenic | 55.0% |
| !! | GGTATATGGGAGTGGGCTGT+AGG | + | chr3.4:99060216-99060235 | MS.gene66838:CDS | 55.0% |
| TCGATGGGTGGTCTGAGAGG+AGG | + | chr3.4:99058571-99058590 | MS.gene66838:CDS | 60.0% | |
| TTGCGTGACCGTGACGTCTC+TGG | + | chr3.4:99060195-99060214 | MS.gene66838:CDS | 60.0% | |
| ! | CTCGCTTCTTGGGTTGTCGC+CGG | + | chr3.4:99058601-99058620 | MS.gene66838:CDS | 60.0% |
| !! | ATGGGAGTGGGCTGTAGGAG+TGG | + | chr3.4:99060221-99060240 | MS.gene66838:CDS | 60.0% |
| CGGCGACAACCCAAGAAGCG+AGG | - | chr3.4:99058603-99058622 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99058517 | 99060263 | 99058517 | ID=MS.gene66838 |
| chr3.4 | mRNA | 99058517 | 99060263 | 99058517 | ID=MS.gene66838.t1;Parent=MS.gene66838 |
| chr3.4 | exon | 99058517 | 99058759 | 99058517 | ID=MS.gene66838.t1.exon1;Parent=MS.gene66838.t1 |
| chr3.4 | CDS | 99058517 | 99058759 | 99058517 | ID=cds.MS.gene66838.t1;Parent=MS.gene66838.t1 |
| chr3.4 | exon | 99059832 | 99059861 | 99059832 | ID=MS.gene66838.t1.exon2;Parent=MS.gene66838.t1 |
| chr3.4 | CDS | 99059832 | 99059861 | 99059832 | ID=cds.MS.gene66838.t1;Parent=MS.gene66838.t1 |
| chr3.4 | exon | 99060078 | 99060263 | 99060078 | ID=MS.gene66838.t1.exon3;Parent=MS.gene66838.t1 |
| chr3.4 | CDS | 99060078 | 99060263 | 99060078 | ID=cds.MS.gene66838.t1;Parent=MS.gene66838.t1 |
| Gene Sequence |
| Protein sequence |
