AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 45 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATTTCTTCATTATATC+TGG 0.192913 3.1:+73867354 None:intergenic
TTTCTGTATTTGAACCATTA+TGG 0.214523 3.1:+73869530 None:intergenic
CACCTCTTATAGTTGCTAAA+TGG 0.288298 3.1:-73868654 MS.gene057140:intron
TTCTGTATTTGAACCATTAT+GGG 0.289351 3.1:+73869531 None:intergenic
TGTCCTGGTCTTACATCTCC+TGG 0.329472 3.1:-73867282 MS.gene057140:CDS
AAATATGAACTTTACATTGA+TGG 0.334633 3.1:+73868439 None:intergenic
GGGTGTTCTGGATGAGGAAG+TGG 0.336037 3.1:-73867259 MS.gene057140:CDS
AACTATAAGAGGTGACTTCT+TGG 0.338003 3.1:+73868663 None:intergenic
TGGTGCAATAAGATTTGTTT+TGG 0.351364 3.1:-73867322 MS.gene057140:CDS
CGCTTATGATCCCTAAAATC+TGG 0.363912 3.1:+73866241 None:intergenic
GTGTTCTGGATGAGGAAGTG+GGG 0.404683 3.1:-73867257 MS.gene057140:CDS
TGGATCAAGTTCCAGAAAAC+AGG 0.408316 3.1:+73866261 None:intergenic
AAGTTAGCAAAGGCCCATAA+TGG 0.420270 3.1:-73869544 None:intergenic
GAGAGCCGCGATGCCAACTT+AGG 0.431618 3.1:-73866292 MS.gene057140:CDS
AACCATTTAGCAACTATAAG+AGG 0.435947 3.1:+73868652 None:intergenic
GGTGTTCTGGATGAGGAAGT+GGG 0.436303 3.1:-73867258 MS.gene057140:CDS
GTCCTGGTCTTACATCTCCT+GGG 0.439119 3.1:-73867281 MS.gene057140:CDS
TCCAACACTGGTTCAAGTCC+TGG 0.460743 3.1:+73868697 None:intergenic
ACTATAAGAGGTGACTTCTT+GGG 0.475825 3.1:+73868664 None:intergenic
CTTATGGTGCGTTGAGTTGA+AGG 0.481791 3.1:+73869408 None:intergenic
AAACAGCATGCCCTTGCCAT+TGG 0.482054 3.1:-73867096 MS.gene057140:CDS
TTTCTCATTTCAGGCCATCA+TGG 0.485619 3.1:-73867127 MS.gene057140:intron
TAGTCAGAACCATCTCAATC+TGG 0.488658 3.1:-73868532 MS.gene057140:CDS
TGTTCTGGATGAGGAAGTGG+GGG 0.494533 3.1:-73867256 MS.gene057140:CDS
AGTCGCAAGGTAGGCATGTA+CGG 0.512614 3.1:+73868465 None:intergenic
AGAGCCGCGATGCCAACTTA+GGG 0.516621 3.1:-73866291 MS.gene057140:CDS
ATTACTAAACTGCAGTATCC+AGG 0.527390 3.1:-73868715 MS.gene057140:intron
ACAGGACTGCATCCCTAAGT+TGG 0.534258 3.1:+73866279 None:intergenic
GAACCATCTCAATCTGGTTG+TGG 0.552638 3.1:-73868526 MS.gene057140:CDS
GGTGCAAACATAATGTGTCC+TGG 0.560571 3.1:-73867297 MS.gene057140:CDS
GTATAATAAAACAAACTAGC+AGG 0.560702 3.1:+73866216 None:intergenic
TCCTGGTCTTACATCTCCTG+GGG 0.566559 3.1:-73867280 MS.gene057140:CDS
TCCAGGACTTGAACCAGTGT+TGG 0.569000 3.1:-73868698 MS.gene057140:CDS
ACGTCAAAGTATTGCAGATG+AGG 0.585598 3.1:-73868979 MS.gene057140:intron
TGATGGAGAAGTCGCAAGGT+AGG 0.596779 3.1:+73868456 None:intergenic
TTTCAGGCCATCATGGCTGA+AGG 0.607923 3.1:-73867120 MS.gene057140:intron
TCACCACAACCAGATTGAGA+TGG 0.615908 3.1:+73868523 None:intergenic
ACGCAACAGTGTAACTCTCG+AGG 0.621227 3.1:+73869504 None:intergenic
ACATTGATGGAGAAGTCGCA+AGG 0.629589 3.1:+73868452 None:intergenic
CGCAACAGTGTAACTCTCGA+GGG 0.639969 3.1:+73869505 None:intergenic
GGAAGTATATCATCCAACAC+TGG 0.658326 3.1:+73868685 None:intergenic
CCTGGTCTTACATCTCCTGG+GGG 0.695202 3.1:-73867279 MS.gene057140:CDS
AAACAAATCTTATTGCACCA+CGG 0.718835 3.1:+73867325 None:intergenic
GCATCCCTAAGTTGGCATCG+CGG 0.749002 3.1:+73866287 None:intergenic
AAGAAATTACAAGTTGACCG+TGG 0.749697 3.1:-73867342 MS.gene057140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTAATTTATTTTT+CGG - chr3.1:73866465-73866484 MS.gene057140:intron 0.0%
!! AAATGATAATTGATAAATTA+CGG + chr3.1:73868261-73868280 None:intergenic 10.0%
!! TATAATATATTAAAAATCAG+CGG + chr3.1:73869389-73869408 None:intergenic 10.0%
!!! GAAATTAAATCATTTTTTTA+GGG + chr3.1:73866538-73866557 None:intergenic 10.0%
!! AAAACTAATATAGAAGAAAA+TGG + chr3.1:73866442-73866461 None:intergenic 15.0%
!! AGAATAAAATAAAGATTGTT+AGG + chr3.1:73869413-73869432 None:intergenic 15.0%
!! CATATATTATCTTGATTAAA+AGG + chr3.1:73868015-73868034 None:intergenic 15.0%
!! TTTGTAATATTCTTTCATTT+GGG - chr3.1:73867370-73867389 MS.gene057140:intron 15.0%
!!! ATTTTATTCTATATTGTAGA+TGG - chr3.1:73869423-73869442 MS.gene057140:CDS 15.0%
!!! CGAAATTAAATCATTTTTTT+AGG + chr3.1:73866539-73866558 None:intergenic 15.0%
!! AAATAAGTATACATACATAG+TGG - chr3.1:73869255-73869274 MS.gene057140:intron 20.0%
!! AAATATGAACTTTACATTGA+TGG + chr3.1:73867332-73867351 None:intergenic 20.0%
!! AATAAAAAAGATGCATAGTT+TGG + chr3.1:73866990-73867009 None:intergenic 20.0%
!! ACCAACACAAAAAAAAAAAA+AGG + chr3.1:73866823-73866842 None:intergenic 20.0%
!! ATGCATATATAAAGTAAAAG+AGG + chr3.1:73867720-73867739 None:intergenic 20.0%
!! CCATTAAAATTTATACTACA+TGG + chr3.1:73869001-73869020 None:intergenic 20.0%
!! GTTTGTAATATTCTTTCATT+TGG - chr3.1:73867369-73867388 MS.gene057140:intron 20.0%
!! TAATAAGTACATGAATACAA+AGG + chr3.1:73869236-73869255 None:intergenic 20.0%
!! TATGGATATAAACTACTTAT+AGG - chr3.1:73867447-73867466 MS.gene057140:intron 20.0%
!! TGTAATTTCTTCATTATATC+TGG + chr3.1:73868417-73868436 None:intergenic 20.0%
!! TTGGATAGTATAACTTAATT+GGG - chr3.1:73869352-73869371 MS.gene057140:intron 20.0%
!! TTTGGATAGTATAACTTAAT+TGG - chr3.1:73869351-73869370 MS.gene057140:intron 20.0%
!!! AAATCATTTTTTTAGGGTTT+AGG + chr3.1:73866532-73866551 None:intergenic 20.0%
!!! AATCATTTTTTTAGGGTTTA+GGG + chr3.1:73866531-73866550 None:intergenic 20.0%
!!! CCATGTAGTATAAATTTTAA+TGG - chr3.1:73868998-73869017 MS.gene057140:CDS 20.0%
!!! CTTTTGTTTATTTGGAATTT+TGG - chr3.1:73869333-73869352 MS.gene057140:intron 20.0%
!!! TCTTATCTCTTTTGTTTATT+TGG - chr3.1:73869325-73869344 MS.gene057140:intron 20.0%
!!! TTTTTTGAGTAATGCATATA+TGG - chr3.1:73867429-73867448 MS.gene057140:intron 20.0%
! AAACAATCTACAAAACACAA+TGG + chr3.1:73868558-73868577 None:intergenic 25.0%
! ACTACCATTCAATAATAAGA+CGG + chr3.1:73867814-73867833 None:intergenic 25.0%
! AGATATCACTAATTGTATGT+GGG - chr3.1:73866856-73866875 MS.gene057140:intron 25.0%
! ATACTGCAGTTTAGTAATTT+AGG + chr3.1:73867051-73867070 None:intergenic 25.0%
! ATTAAAACTAGCAAAACTCT+TGG + chr3.1:73867862-73867881 None:intergenic 25.0%
! CATACAATTAGTGATATCTA+AGG + chr3.1:73866855-73866874 None:intergenic 25.0%
! TAATATTCTTTCATTTGGGA+GGG - chr3.1:73867374-73867393 MS.gene057140:intron 25.0%
! TAATGAACAATTGTGTAAAG+AGG + chr3.1:73866597-73866616 None:intergenic 25.0%
! TAGAGATTAGAGATAAGATA+TGG - chr3.1:73869058-73869077 MS.gene057140:intron 25.0%
! TAGATATCACTAATTGTATG+TGG - chr3.1:73866855-73866874 MS.gene057140:intron 25.0%
! TAGGTTAATTAATAGTCACA+TGG + chr3.1:73867032-73867051 None:intergenic 25.0%
! TATCTTGATTAAAAGGTTTG+AGG + chr3.1:73868008-73868027 None:intergenic 25.0%
! TATGTGTTGAAGATATTATC+TGG + chr3.1:73867769-73867788 None:intergenic 25.0%
! TGAGAAAAATACATGATATG+AGG + chr3.1:73868628-73868647 None:intergenic 25.0%
! TTCTGTATTTGAACCATTAT+GGG + chr3.1:73866240-73866259 None:intergenic 25.0%
! TTTCTGTATTTGAACCATTA+TGG + chr3.1:73866241-73866260 None:intergenic 25.0%
!! GAATACATGATAATGTTGAT+TGG - chr3.1:73867587-73867606 MS.gene057140:intron 25.0%
!! TCATGTATTTTTCTCATTTC+AGG - chr3.1:73868632-73868651 MS.gene057140:intron 25.0%
!! TCGTGATTCTGATAATTTTA+TGG - chr3.1:73866940-73866959 MS.gene057140:intron 25.0%
!! TGACATTTTTGTAAATCCAA+TGG + chr3.1:73868691-73868710 None:intergenic 25.0%
!!! AAGAGGTACTAAAAAAAAAG+TGG + chr3.1:73866580-73866599 None:intergenic 25.0%
!!! AGAGGTACTAAAAAAAAAGT+GGG + chr3.1:73866579-73866598 None:intergenic 25.0%
!!! CTTCCTACATTTTAAAAAAG+AGG + chr3.1:73868234-73868253 None:intergenic 25.0%
!!! GCCTTTTTTTTTTTTTGTGT+TGG - chr3.1:73866819-73866838 MS.gene057140:intron 25.0%
!!! TGTACTTTTTGAACATCTTA+TGG + chr3.1:73866379-73866398 None:intergenic 25.0%
AAACAAATCTTATTGCACCA+CGG + chr3.1:73868446-73868465 None:intergenic 30.0%
AAAGAGGCTCTTCATTTATT+TGG + chr3.1:73868793-73868812 None:intergenic 30.0%
AACCATTTAGCAACTATAAG+AGG + chr3.1:73867119-73867138 None:intergenic 30.0%
AACTTGCATTATCTCAATGA+TGG - chr3.1:73869179-73869198 MS.gene057140:intron 30.0%
AAGAGGCTCTTCATTTATTT+GGG + chr3.1:73868792-73868811 None:intergenic 30.0%
AATAAAACATAGGGCTAATG+TGG - chr3.1:73869032-73869051 MS.gene057140:CDS 30.0%
AATATTCTTTCATTTGGGAG+GGG - chr3.1:73867375-73867394 MS.gene057140:intron 30.0%
ACATATGGTGAATACTGAAT+AGG - chr3.1:73867492-73867511 MS.gene057140:intron 30.0%
ACATTTAGATAACCTTGAGA+CGG - chr3.1:73868100-73868119 MS.gene057140:intron 30.0%
ACTAAAAAAAAAGTGGGCAT+TGG + chr3.1:73866573-73866592 None:intergenic 30.0%
AGAGAAAAACAATAGCTGTT+TGG - chr3.1:73867539-73867558 MS.gene057140:intron 30.0%
ATTATCTCAATGATGGTCTT+TGG - chr3.1:73869186-73869205 MS.gene057140:intron 30.0%
CTCTATACTAGAAAGTTTCT+CGG + chr3.1:73867568-73867587 None:intergenic 30.0%
GAGAGAACATAAAGATCATA+CGG - chr3.1:73867888-73867907 MS.gene057140:intron 30.0%
GTAATATTCTTTCATTTGGG+AGG - chr3.1:73867373-73867392 MS.gene057140:intron 30.0%
TAAAACATGGAAGAGTTTCT+AGG - chr3.1:73868310-73868329 MS.gene057140:intron 30.0%
TAATGACCAAAGTGAGAAAA+TGG + chr3.1:73868197-73868216 None:intergenic 30.0%
TATACTACATGGCAATAAAG+TGG + chr3.1:73868990-73869009 None:intergenic 30.0%
TATTAAAAATCAGCGGTAAC+TGG + chr3.1:73869382-73869401 None:intergenic 30.0%
TCACGAACACTAAAAAACAA+AGG + chr3.1:73867279-73867298 None:intergenic 30.0%
TCTCAAGGTTATCTAAATGT+GGG + chr3.1:73868100-73868119 None:intergenic 30.0%
TTCAGAAAAGCAATCAACAA+GGG - chr3.1:73869143-73869162 MS.gene057140:intron 30.0%
TTGAAGCTTAAACAGAATCA+CGG + chr3.1:73866889-73866908 None:intergenic 30.0%
TTGGTGAATTAATGCATGTT+TGG + chr3.1:73866971-73866990 None:intergenic 30.0%
TTTAAAAAAGAGGACGAATG+CGG + chr3.1:73868224-73868243 None:intergenic 30.0%
TTTCAGAAAAGCAATCAACA+AGG - chr3.1:73869142-73869161 MS.gene057140:intron 30.0%
! AAACAAACCATTCTAGGAAA+TGG - chr3.1:73868134-73868153 MS.gene057140:intron 30.0%
! AAAGTTTTCTCAGTTCTCAA+AGG + chr3.1:73867962-73867981 None:intergenic 30.0%
! AAGGTTTGAGGAGTATAAAT+AGG + chr3.1:73867996-73868015 None:intergenic 30.0%
! ACATGATAATGTTGATTGGT+TGG - chr3.1:73867591-73867610 MS.gene057140:intron 30.0%
! AGGTTTGAGGAGTATAAATA+GGG + chr3.1:73867995-73868014 None:intergenic 30.0%
! GAAACTCTTCCATGTTTTAT+AGG + chr3.1:73868309-73868328 None:intergenic 30.0%
! TAAAGTGGAAAACTTGTTTG+TGG + chr3.1:73868975-73868994 None:intergenic 30.0%
! TTGTAGTTCTATTTGCTTTG+AGG - chr3.1:73867149-73867168 MS.gene057140:intron 30.0%
! TTTCAGATTTTCATCTGAAG+AGG - chr3.1:73866723-73866742 MS.gene057140:intron 30.0%
! TTTTGTAAATCCAATGGCAA+GGG + chr3.1:73868685-73868704 None:intergenic 30.0%
! TTTTTGTAAATCCAATGGCA+AGG + chr3.1:73868686-73868705 None:intergenic 30.0%
!! TGGTGCAATAAGATTTGTTT+TGG - chr3.1:73868446-73868465 MS.gene057140:intron 30.0%
!!! CGTCCTCTTTTTTAAAATGT+AGG - chr3.1:73868228-73868247 MS.gene057140:intron 30.0%
!!! TAGCCCTATGTTTTATTTGA+GGG + chr3.1:73869029-73869048 None:intergenic 30.0%
!!! TGCAATAAGATTTGTTTTGG+CGG - chr3.1:73868449-73868468 MS.gene057140:intron 30.0%
!!! TTAGCCCTATGTTTTATTTG+AGG + chr3.1:73869030-73869049 None:intergenic 30.0%
!!! TTGTTTTTTAGTGTTCGTGA+TGG - chr3.1:73867279-73867298 MS.gene057140:CDS 30.0%
AAAGCAATCAACAAGGGAAT+TGG - chr3.1:73869149-73869168 MS.gene057140:intron 35.0%
AACTATAAGAGGTGACTTCT+TGG + chr3.1:73867108-73867127 None:intergenic 35.0%
AACTGTACTGTTCATACCAA+AGG - chr3.1:73867627-73867646 MS.gene057140:intron 35.0%
AAGAAGTTCAACTACTTTCG+TGG - chr3.1:73869119-73869138 MS.gene057140:intron 35.0%
AAGCAATCAACAAGGGAATT+GGG - chr3.1:73869150-73869169 MS.gene057140:intron 35.0%
ACTATAAGAGGTGACTTCTT+GGG + chr3.1:73867107-73867126 None:intergenic 35.0%
ACTGTACTGTTCATACCAAA+GGG - chr3.1:73867628-73867647 MS.gene057140:intron 35.0%
AGCAACATCAATGTTCTGAT+TGG - chr3.1:73867662-73867681 MS.gene057140:intron 35.0%
AGCTCCCTCAAATAAAACAT+AGG - chr3.1:73869022-73869041 MS.gene057140:CDS 35.0%
ATTACTAAACTGCAGTATCC+AGG - chr3.1:73867053-73867072 MS.gene057140:intron 35.0%
CAATCATCGAAACTGAAACT+AGG + chr3.1:73869088-73869107 None:intergenic 35.0%
CACCTCTTATAGTTGCTAAA+TGG - chr3.1:73867114-73867133 MS.gene057140:CDS 35.0%
CTCAAGGTTATCTAAATGTG+GGG + chr3.1:73868099-73868118 None:intergenic 35.0%
GCTCCCTCAAATAAAACATA+GGG - chr3.1:73869023-73869042 MS.gene057140:CDS 35.0%
GTCTCAAGGTTATCTAAATG+TGG + chr3.1:73868101-73868120 None:intergenic 35.0%
TCACTAATTGTATGTGGGTT+TGG - chr3.1:73866861-73866880 MS.gene057140:intron 35.0%
TTCACCATATGTGTTGAACA+CGG + chr3.1:73867484-73867503 None:intergenic 35.0%
! AAACCATTCTAGGAAATGGA+GGG - chr3.1:73868138-73868157 MS.gene057140:intron 35.0%
! AAGAAATTACAAGTTGACCG+TGG - chr3.1:73868426-73868445 MS.gene057140:intron 35.0%
! ATGTCAACCAGAGAGTATAA+TGG + chr3.1:73868834-73868853 None:intergenic 35.0%
! CCATGTTTTATAGGTGCTTT+TGG + chr3.1:73868300-73868319 None:intergenic 35.0%
! GGAACTTGATCCAGATTTTA+GGG - chr3.1:73869517-73869536 MS.gene057140:CDS 35.0%
! GGTTTGAGGAGTATAAATAG+GGG + chr3.1:73867994-73868013 None:intergenic 35.0%
! GTGCTTTTGGTCAAAGTATA+GGG + chr3.1:73868287-73868306 None:intergenic 35.0%
! TCTGCCGTCTTATTATTGAA+TGG - chr3.1:73867807-73867826 MS.gene057140:intron 35.0%
! TGGAACTTGATCCAGATTTT+AGG - chr3.1:73869516-73869535 MS.gene057140:CDS 35.0%
!! CCAAAAGCACCTATAAAACA+TGG - chr3.1:73868297-73868316 MS.gene057140:intron 35.0%
!!! ATGTTGTTTTTGCCTAACCA+CGG - chr3.1:73866910-73866929 MS.gene057140:intron 35.0%
!!! GCAATAAGATTTGTTTTGGC+GGG - chr3.1:73868450-73868469 MS.gene057140:intron 35.0%
AACCACCAAGGCAATAACAA+TGG + chr3.1:73868174-73868193 None:intergenic 40.0%
AGAGATAAGAAAAGCCACGA+TGG + chr3.1:73869315-73869334 None:intergenic 40.0%
AGCAATCAACAAGGGAATTG+GGG - chr3.1:73869151-73869170 MS.gene057140:intron 40.0%
CCTCTTACCATTATACTCTC+TGG - chr3.1:73868824-73868843 MS.gene057140:intron 40.0%
CGCTTATGATCCCTAAAATC+TGG + chr3.1:73869530-73869549 None:intergenic 40.0%
CTTTCTCTCAAGCATAGTGA+TGG - chr3.1:73867740-73867759 MS.gene057140:intron 40.0%
GTTCATACCAAAGGGCTATA+AGG - chr3.1:73867636-73867655 MS.gene057140:intron 40.0%
TAGTCAGAACCATCTCAATC+TGG - chr3.1:73867236-73867255 MS.gene057140:intron 40.0%
TATTTGATGTGCTACCATCG+TGG - chr3.1:73869298-73869317 MS.gene057140:intron 40.0%
TCTCAATGATGGTCTTTGGA+AGG - chr3.1:73869190-73869209 MS.gene057140:intron 40.0%
TGATCCGTGTTCAACACATA+TGG - chr3.1:73867477-73867496 MS.gene057140:intron 40.0%
TGGATCAAGTTCCAGAAAAC+AGG + chr3.1:73869510-73869529 None:intergenic 40.0%
TTAGATAACCTTGAGACGGA+GGG - chr3.1:73868104-73868123 MS.gene057140:intron 40.0%
TTCTCAGTTCTCAAAGGTTC+AGG + chr3.1:73867956-73867975 None:intergenic 40.0%
TTTAGATAACCTTGAGACGG+AGG - chr3.1:73868103-73868122 MS.gene057140:intron 40.0%
TTTCTCATTTCAGGCCATCA+TGG - chr3.1:73868641-73868660 MS.gene057140:intron 40.0%
! AACCATTCTAGGAAATGGAG+GGG - chr3.1:73868139-73868158 MS.gene057140:intron 40.0%
! AACTTGTTTGTGGAAGGAAG+TGG + chr3.1:73868965-73868984 None:intergenic 40.0%
! ACAAGCCATTGTTATTGCCT+TGG - chr3.1:73868166-73868185 MS.gene057140:intron 40.0%
! CAAACCATTCTAGGAAATGG+AGG - chr3.1:73868137-73868156 MS.gene057140:intron 40.0%
! CCAGAGAGTATAATGGTAAG+AGG + chr3.1:73868827-73868846 None:intergenic 40.0%
! CTTTTGGTCAAAGTATAGGG+AGG + chr3.1:73868284-73868303 None:intergenic 40.0%
! GGAAGTATATCATCCAACAC+TGG + chr3.1:73867086-73867105 None:intergenic 40.0%
! GGTGCTTTTGGTCAAAGTAT+AGG + chr3.1:73868288-73868307 None:intergenic 40.0%
! GGTTCTGACTACAAGAACAA+CGG + chr3.1:73867227-73867246 None:intergenic 40.0%
! GTGGAAAACTTGTTTGTGGA+AGG + chr3.1:73868971-73868990 None:intergenic 40.0%
! GTGGTTCCATTTTCTCACTT+TGG - chr3.1:73868188-73868207 MS.gene057140:intron 40.0%
!! ACGTCAAAGTATTGCAGATG+AGG - chr3.1:73866789-73866808 MS.gene057140:intron 40.0%
AAACACAATGGCAGTACCAC+AGG + chr3.1:73868546-73868565 None:intergenic 45.0%
ACATTGATGGAGAAGTCGCA+AGG + chr3.1:73867319-73867338 None:intergenic 45.0%
AGAGGTGGAGCTACATGTTT+AGG - chr3.1:73868928-73868947 MS.gene057140:intron 45.0%
CAGACATTATGCTCTGCAGT+TGG - chr3.1:73868341-73868360 MS.gene057140:intron 45.0%
GAACCATCTCAATCTGGTTG+TGG - chr3.1:73867242-73867261 MS.gene057140:CDS 45.0%
GGGGGAAAACAAACCATTCT+AGG - chr3.1:73868128-73868147 MS.gene057140:intron 45.0%
GGTGCAAACATAATGTGTCC+TGG - chr3.1:73868471-73868490 MS.gene057140:CDS 45.0%
GTGAGAAAATGGAACCACCA+AGG + chr3.1:73868186-73868205 None:intergenic 45.0%
GTGGAGCTACATGTTTAGGT+GGG - chr3.1:73868932-73868951 MS.gene057140:intron 45.0%
TCACCACAACCAGATTGAGA+TGG + chr3.1:73867248-73867267 None:intergenic 45.0%
TGCTCAACCTTATAGCCCTT+TGG + chr3.1:73867646-73867665 None:intergenic 45.0%
TGGAGCTACATGTTTAGGTG+GGG - chr3.1:73868933-73868952 MS.gene057140:intron 45.0%
! ACCATTCTAGGAAATGGAGG+GGG - chr3.1:73868140-73868159 MS.gene057140:intron 45.0%
! AGAGGCAGAGTTTCTGAAAG+AGG + chr3.1:73868809-73868828 None:intergenic 45.0%
! AGCCATTGTTATTGCCTTGG+TGG - chr3.1:73868169-73868188 MS.gene057140:intron 45.0%
! CTGTTTTCCTTCAGCCATGA+TGG + chr3.1:73868658-73868677 None:intergenic 45.0%
!! CTTATGGTGCGTTGAGTTGA+AGG + chr3.1:73866363-73866382 None:intergenic 45.0%
!!! TTGTTTTTGCCTAACCACGG+TGG - chr3.1:73866913-73866932 MS.gene057140:intron 45.0%
AAACAGCATGCCCTTGCCAT+TGG - chr3.1:73868672-73868691 MS.gene057140:CDS 50.0%
AATTGCACCATTGCTCGTGG+TGG - chr3.1:73866503-73866522 MS.gene057140:intron 50.0%
ACAGGACTGCATCCCTAAGT+TGG + chr3.1:73869492-73869511 None:intergenic 50.0%
ACGCAACAGTGTAACTCTCG+AGG + chr3.1:73866267-73866286 None:intergenic 50.0%
AGCAATTGCACCATTGCTCG+TGG - chr3.1:73866500-73866519 MS.gene057140:intron 50.0%
AGTCGCAAGGTAGGCATGTA+CGG + chr3.1:73867306-73867325 None:intergenic 50.0%
ATAACCTTGAGACGGAGGGA+GGG - chr3.1:73868108-73868127 MS.gene057140:intron 50.0%
CAACCTCGTGCAATTAGAGG+TGG - chr3.1:73868913-73868932 MS.gene057140:intron 50.0%
CCACAACCTCGTGCAATTAG+AGG - chr3.1:73868910-73868929 MS.gene057140:intron 50.0%
CCTCTAATTGCACGAGGTTG+TGG + chr3.1:73868913-73868932 None:intergenic 50.0%
CGCAACAGTGTAACTCTCGA+GGG + chr3.1:73866266-73866285 None:intergenic 50.0%
GGAGCTACATGTTTAGGTGG+GGG - chr3.1:73868934-73868953 MS.gene057140:intron 50.0%
GGTGGAGCTACATGTTTAGG+TGG - chr3.1:73868931-73868950 MS.gene057140:intron 50.0%
TCCAGGACTTGAACCAGTGT+TGG - chr3.1:73867070-73867089 MS.gene057140:CDS 50.0%
TCCCCCTCCATTTCCTAGAA+TGG + chr3.1:73868144-73868163 None:intergenic 50.0%
TGATGGAGAAGTCGCAAGGT+AGG + chr3.1:73867315-73867334 None:intergenic 50.0%
TTTCAGGCCATCATGGCTGA+AGG - chr3.1:73868648-73868667 MS.gene057140:intron 50.0%
! AGGGATGCAGTCCTGTTTTC+TGG - chr3.1:73869496-73869515 MS.gene057140:CDS 50.0%
! GGTGTTCTGGATGAGGAAGT+GGG - chr3.1:73868510-73868529 MS.gene057140:CDS 50.0%
! GTGTTCTGGATGAGGAAGTG+GGG - chr3.1:73868511-73868530 MS.gene057140:CDS 50.0%
! TGTTCTGGATGAGGAAGTGG+GGG - chr3.1:73868512-73868531 MS.gene057140:CDS 50.0%
!! GTCCTGGTCTTACATCTCCT+GGG - chr3.1:73868487-73868506 MS.gene057140:CDS 50.0%
!! TCCAACACTGGTTCAAGTCC+TGG + chr3.1:73867074-73867093 None:intergenic 50.0%
!! TCCTGGTCTTACATCTCCTG+GGG - chr3.1:73868488-73868507 MS.gene057140:CDS 50.0%
!! TGTCCTGGTCTTACATCTCC+TGG - chr3.1:73868486-73868505 MS.gene057140:CDS 50.0%
AGAATCACGATGAGCCACCG+TGG + chr3.1:73866930-73866949 None:intergenic 55.0%
AGAGCCGCGATGCCAACTTA+GGG - chr3.1:73869477-73869496 MS.gene057140:CDS 55.0%
GATAACCTTGAGACGGAGGG+AGG - chr3.1:73868107-73868126 MS.gene057140:intron 55.0%
GCTCCACCTCTAATTGCACG+AGG + chr3.1:73868919-73868938 None:intergenic 55.0%
TAACCTTGAGACGGAGGGAG+GGG - chr3.1:73868109-73868128 MS.gene057140:intron 55.0%
! GCATCCCTAAGTTGGCATCG+CGG + chr3.1:73869484-73869503 None:intergenic 55.0%
! GGGTGTTCTGGATGAGGAAG+TGG - chr3.1:73868509-73868528 MS.gene057140:CDS 55.0%
! TAGGGTACCACCACGAGCAA+TGG + chr3.1:73866513-73866532 None:intergenic 55.0%
!! CCTGGTCTTACATCTCCTGG+GGG - chr3.1:73868489-73868508 MS.gene057140:CDS 55.0%
!! TACATCTCCTGGGGGTGTTC+TGG - chr3.1:73868497-73868516 MS.gene057140:CDS 55.0%
AACCTTGAGACGGAGGGAGG+GGG - chr3.1:73868110-73868129 MS.gene057140:intron 60.0%
AGTGGGGGCAGAATGTCCTG+TGG - chr3.1:73868527-73868546 MS.gene057140:CDS 60.0%
CACGATGAGCCACCGTGGTT+AGG + chr3.1:73866925-73866944 None:intergenic 60.0%
CCCCCAGGAGATGTAAGACC+AGG + chr3.1:73868492-73868511 None:intergenic 60.0%
GAGAGCCGCGATGCCAACTT+AGG - chr3.1:73869476-73869495 MS.gene057140:CDS 60.0%
TCCTCATCCAGAACACCCCC+AGG + chr3.1:73868507-73868526 None:intergenic 60.0%
!! TCCTGGGGGTGTTCTGGATG+AGG - chr3.1:73868503-73868522 MS.gene057140:CDS 60.0%
TTCCCCCTCCCTCCGTCTCA+AGG + chr3.1:73868115-73868134 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 73866231 73869559 73866231 ID=MS.gene057140
chr3.1 mRNA 73866231 73869559 73866231 ID=MS.gene057140.t1;Parent=MS.gene057140
chr3.1 exon 73869397 73869559 73869397 ID=MS.gene057140.t1.exon1;Parent=MS.gene057140.t1
chr3.1 CDS 73869397 73869559 73869397 ID=cds.MS.gene057140.t1;Parent=MS.gene057140.t1
chr3.1 exon 73868980 73869061 73868980 ID=MS.gene057140.t1.exon2;Parent=MS.gene057140.t1
chr3.1 CDS 73868980 73869061 73868980 ID=cds.MS.gene057140.t1;Parent=MS.gene057140.t1
chr3.1 exon 73868655 73868722 73868655 ID=MS.gene057140.t1.exon3;Parent=MS.gene057140.t1
chr3.1 CDS 73868655 73868722 73868655 ID=cds.MS.gene057140.t1;Parent=MS.gene057140.t1
chr3.1 exon 73868454 73868551 73868454 ID=MS.gene057140.t1.exon4;Parent=MS.gene057140.t1
chr3.1 CDS 73868454 73868551 73868454 ID=cds.MS.gene057140.t1;Parent=MS.gene057140.t1
chr3.1 exon 73867242 73867378 73867242 ID=MS.gene057140.t1.exon5;Parent=MS.gene057140.t1
chr3.1 CDS 73867242 73867378 73867242 ID=cds.MS.gene057140.t1;Parent=MS.gene057140.t1
chr3.1 exon 73867069 73867136 73867069 ID=MS.gene057140.t1.exon6;Parent=MS.gene057140.t1
chr3.1 CDS 73867069 73867136 73867069 ID=cds.MS.gene057140.t1;Parent=MS.gene057140.t1
chr3.1 exon 73866231 73866348 73866231 ID=MS.gene057140.t1.exon7;Parent=MS.gene057140.t1
chr3.1 CDS 73866231 73866348 73866231 ID=cds.MS.gene057140.t1;Parent=MS.gene057140.t1
Gene Sequence

>MS.gene057140

CAAAGGCCCATAATGGTTCAAATACAGAAACACCCTCGAGAGTTACACTGTTGCGTTTTGCATCTCTTTCTCTCTCTACAATACAATTTCAGACACAGACACAGATTCACTTTCATCTCAAAATCATCACCTTCAACTCAACGCACCATAAGATGTTCAAAAAGTACACTCTCTCACTCTACTCTCTGAATTCTAATTCATTCATTCACCATTTTCTTCTATATTAGTTTTTTCATTTTATTTAATTTATTTTTCGGAGTTATTCTGTCAGCAATTGCACCATTGCTCGTGGTGGTACCCTAAACCCTAAAAAAATGATTTAATTTCGTATTGAAATTTCCAATGCCCACTTTTTTTTTAGTACCTCTTTACACAATTGTTCATTAATTTATTTTATGATGTTGTTGCTTCAATCTACAATTGTTTATTGAAATTATGATTTTTCAATGCGTATCTTTAGATTCAAATGTCAAAAAAATTTTTTTTTTTGCTTTTCAGATTTTCATCTGAAGAGGTGTCTGCACAGAATCAAGTGAAAGCATCTGTTCAAAGAAGAATACGTCAAAGTATTGCAGATGAGGTGATGTCGCCTTTTTTTTTTTTTGTGTTGGTTTTTGTTGTCCTTAGATATCACTAATTGTATGTGGGTTTGGTGCCGTGATTCTGTTTAAGCTTCAAAATGTTGTTTTTGCCTAACCACGGTGGCTCATCGTGATTCTGATAATTTTATGGTCAATCCAAACATGCATTAATTCACCAAACTATGCATCTTTTTTATTGCACGTGAGTTTGTGTTAACCATGTGACTATTAATTAACCTAAATTACTAAACTGCAGTATCCAGGACTTGAACCAGTGTTGGATGATATACTTCCCAAGAAGTCACCTCTTATAGTTGCTAAATGGTTCGTTTGTGAATTGTAGTTCTATTTGCTTTGAGGTTTTCGACGCATCATAAGTTTTATAGCTTCTAACTAGTAGTATTTGTTTTTTCCGTTGTTCTTGTAGTCAGAACCATCTCAATCTGGTTGTGGTGAACAATGTGCCTTTGTTTTTTAGTGTTCGTGATGGTCCGTACATGCCTACCTTGCGACTTCTCCATCAATGTAAAGTTCATATTTCTTGCAATTTTTAACTTGTTTGTAATATTCTTTCATTTGGGAGGGGAACAAGTCATCAGTAATGAATATTTCACTGTTTTTTTGAGTAATGCATATATGGATATAAACTACTTATAGGACGCAGCTGATCCGTGTTCAACACATATGGTGAATACTGAATAGGATGTTGAAAATTGAAATGTATTATAGAGAAAAACAATAGCTGTTTGGCTACCGAGAAACTTTCTAGTATAGAGAATACATGATAATGTTGATTGGTTGGATTCTCTTTCTTTAACTGTACTGTTCATACCAAAGGGCTATAAGGTTGAGCAACATCAATGTTCTGATTGGTATAATTTTCATGACACAGTGAATTAAGCTAGCCTCTTTTACTTTATATATGCATCTTTCTCTCAAGCATAGTGATGGAATCCAGATAATATCTTCAACACATAGTGAAATATTAAACTCATTCTGCCGTCTTATTATTGAATGGTAGTATCTATAGAATGTTTGCAATTTAATCCAAGAGTTTTGCTAGTTTTAATGAACAAGAGAGAACATAAAGATCATACGGTTCTTCATCTATTTGTGATCTTATATTTATTTGTTAGATTCTCCTGAACCTTTGAGAACTGAGAAAACTTTCTTGACTTGCCCCTATTTATACTCCTCAAACCTTTTAATCAAGATAATATATGTGTTCTTCTCCTCAAACCTTTTAATCAAGATAATATATGTGTTCTTCTGACAGTATTTTTACCCCACATTTAGATAACCTTGAGACGGAGGGAGGGGGAAAACAAACCATTCTAGGAAATGGAGGGGGAAAACAAGCCATTGTTATTGCCTTGGTGGTTCCATTTTCTCACTTTGGTCATTACAATCCGCATTCGTCCTCTTTTTTAAAATGTAGGAAGTCGTCCGTAATTTATCAATTATCATTTCCTCCCTATACTTTGACCAAAAGCACCTATAAAACATGGAAGAGTTTCTAGGCTCACACACAGACATTATGCTCTGCAGTTGGTCTTTCTTATATTGCTTGTGAACTGTACTACTGTTTTTTATTTTTCAGATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTTTTGGCGGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGGGGTGTTCTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGTACTGCCATTGTGTTTTGTAGATTGTTTGTAATACACAAAAAGTGAGCATTTTCTAGTGAATTTATATTAACATTCCTCATATCATGTATTTTTCTCATTTCAGGCCATCATGGCTGAAGGAAAACAGCATGCCCTTGCCATTGGATTTACAAAAATGTCAGCAAAAGACATGTAAGAAAATTGTTTCATCGCATGTTTTGTCTACATGTCTGTTGAATGAAATAAATATGAATGTTTTCCCAAATAAATGAAGAGCCTCTTTCAGAAACTCTGCCTCTTACCATTATACTCTCTGGTTGACATTCGTGAACATAGTAAAATTAGCATAAATAGCTTTTTATGTCATATTTCATTATCAGCCACAACCTCGTGCAATTAGAGGTGGAGCTACATGTTTAGGTGGGGGTGCAACCACTTCCTTCCACAAACAAGTTTTCCACTTTATTGCCATGTAGTATAAATTTTAATGGAAGCTCCCTCAAATAAAACATAGGGCTAATGTGGAAATAGAGATTAGAGATAAGATATGGCTAGCCTAGTTTCAGTTTCGATGATTGATTGTGCACTCAAGAAGTTCAACTACTTTCGTGGTTTCAGAAAAGCAATCAACAAGGGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGGTATAAATTGATATATGATCTCCTTTGTATTCATGTACTTATTAAATAAGTATACATACATAGTGGACATATTTATGTTATTCACTTATTTGATGTGCTACCATCGTGGCTTTTCTTATCTCTTTTGTTTATTTGGAATTTTGGATAGTATAACTTAATTGGGCTTACCAGTTACCGCTGATTTTTAATATATTATAGCCTAACAATCTTTATTTTATTCTATATTGTAGATGGAGCGATTTGATTGAAGATGTTGCAACTTGCGAGAGCCGCGATGCCAACTTAGGGATGCAGTCCTGTTTTCTGGAACTTGATCCAGATTTTAGGGATCATAAGCGAACCTGCTAG

Protein sequence

>MS.gene057140.t1

QRPIMVQIQKHPRELHCCVLHLFLSLQYNFRHRHRFTFISKSSPSTQRTIRCSKNFHLKRCLHRIKUKHLFKEEYVKVLQMSIQDLNQCWMIYFPRSHLLULLNVRTISIWLWUTMCLCFLVFVMVRTCLPCDFSINIQIUURNYKLTVVQUDLFWRVQTUCVLVLHLLGVFWMRKWGQNVLWPSWLKENSMPLPLDLQKCQQKTYGAIULKMLQLARAAMPTUGCSPVFWNLIQILGIISEPA