AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66881

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66881.t1 MTR_4g050480 96.837 411 13 0 16 426 29 439 0.0 820
MS.gene66881.t1 MTR_4g050480 96.829 410 13 0 17 426 29 438 0.0 819
MS.gene66881.t1 MTR_1g095740 51.366 183 79 4 81 258 138 315 4.58e-51 179
MS.gene66881.t1 MTR_3g104570 54.595 185 76 2 77 253 84 268 1.24e-49 174
MS.gene66881.t1 MTR_6g033415 39.752 322 172 6 76 379 99 416 2.84e-49 173
MS.gene66881.t1 MTR_7g100790 52.632 171 80 1 83 252 107 277 2.29e-45 163
MS.gene66881.t1 MTR_2g078210 44.242 165 92 0 86 250 76 240 7.65e-45 158
MS.gene66881.t1 MTR_2g078210 44.242 165 92 0 86 250 16 180 1.13e-44 156
MS.gene66881.t1 MTR_2g015370 45.349 172 92 1 86 257 65 234 2.33e-44 156
MS.gene66881.t1 MTR_1g066800 49.383 162 80 2 83 243 115 275 4.50e-44 160
MS.gene66881.t1 MTR_1g066800 49.383 162 80 2 83 243 120 280 5.56e-44 160
MS.gene66881.t1 MTR_8g024540 45.545 202 89 6 83 267 126 323 4.66e-42 156
MS.gene66881.t1 MTR_8g017570 48.925 186 91 2 71 252 77 262 8.35e-37 139
MS.gene66881.t1 MTR_2g099780 53.107 177 73 3 83 249 77 253 3.95e-33 129
MS.gene66881.t1 MTR_1g007920 47.500 200 72 5 83 252 96 292 8.18e-33 129
MS.gene66881.t1 MTR_1g007920 47.500 200 72 5 83 252 121 317 1.71e-32 128
MS.gene66881.t1 MTR_4g087420 32.845 341 173 15 86 379 148 479 3.49e-32 128
MS.gene66881.t1 MTR_0047s0040 27.731 357 205 11 83 416 100 426 1.20e-26 111
MS.gene66881.t1 MTR_3g020990 48.062 129 54 3 85 212 96 212 1.18e-25 104
MS.gene66881.t1 MTR_3g091560 44.886 176 78 5 84 246 112 281 6.77e-25 106
MS.gene66881.t1 MTR_7g114700 36.047 172 95 5 75 242 126 286 2.30e-24 104
MS.gene66881.t1 MTR_1g103070 47.788 113 46 2 83 182 135 247 4.76e-23 101
MS.gene66881.t1 MTR_0019s0070 35.266 207 105 4 79 285 112 289 1.98e-22 99.4
MS.gene66881.t1 MTR_8g014580 63.014 73 27 0 83 155 125 197 3.00e-22 98.6
MS.gene66881.t1 MTR_1g101330 40.000 160 69 3 83 242 114 246 3.04e-22 98.6
MS.gene66881.t1 MTR_8g102400 66.667 66 22 0 83 148 111 176 1.56e-20 93.6
MS.gene66881.t1 MTR_4g108140 36.747 166 83 4 84 248 99 243 3.77e-20 93.2
MS.gene66881.t1 MTR_4g108140 36.747 166 83 4 84 248 100 244 3.95e-20 93.2
MS.gene66881.t1 MTR_2g100740 51.546 97 42 1 81 172 94 190 1.21e-19 90.1
MS.gene66881.t1 MTR_8g074730 59.740 77 28 1 74 147 58 134 2.05e-19 84.7
MS.gene66881.t1 MTR_7g114870 61.194 67 26 0 86 152 108 174 3.62e-19 89.0
MS.gene66881.t1 MTR_4g102840 66.154 65 22 0 83 147 87 151 1.37e-18 87.8
MS.gene66881.t1 MTR_1g023760 33.537 164 81 5 84 244 124 262 3.14e-17 84.7
MS.gene66881.t1 MTR_1g041430 48.148 108 51 1 83 185 110 217 6.68e-17 82.8
MS.gene66881.t1 MTR_1g051810 35.878 131 75 2 86 208 107 236 5.17e-14 73.6
MS.gene66881.t1 MTR_5g038620 49.231 65 33 0 86 150 121 185 8.74e-13 70.9
MS.gene66881.t1 MTR_3g096568 35.897 117 54 4 145 258 47 145 3.26e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66881.t1 AT3G22190 52.854 403 162 7 13 409 28 408 6.88e-112 335
MS.gene66881.t1 AT3G22190 52.854 403 162 7 13 409 28 408 6.88e-112 335
MS.gene66881.t1 AT3G22190 52.854 403 162 7 13 409 28 408 6.88e-112 335
MS.gene66881.t1 AT3G22190 52.854 403 162 7 13 409 28 408 6.88e-112 335
MS.gene66881.t1 AT2G26180 57.789 199 76 2 63 253 63 261 7.32e-62 206
MS.gene66881.t1 AT1G72670 45.701 221 110 3 55 267 64 282 2.61e-53 183
MS.gene66881.t1 AT5G03040 49.143 175 78 3 81 249 112 281 2.83e-49 174
MS.gene66881.t1 AT5G03040 49.143 175 78 3 81 249 112 281 2.83e-49 174
MS.gene66881.t1 AT5G03040 49.143 175 78 3 81 249 112 281 2.83e-49 174
MS.gene66881.t1 AT3G52290 50.000 172 81 3 83 252 107 275 4.62e-46 164
MS.gene66881.t1 AT3G09710 42.932 191 105 2 83 272 107 294 1.25e-42 156
MS.gene66881.t1 AT2G33990 41.176 170 99 1 82 251 45 213 2.69e-41 147
MS.gene66881.t1 AT3G15050 42.424 165 95 0 86 250 52 216 7.32e-41 146
MS.gene66881.t1 AT3G09710 40.976 205 103 4 83 272 107 308 3.48e-40 149
MS.gene66881.t1 AT1G17480 41.262 206 101 4 39 239 49 239 9.08e-40 146
MS.gene66881.t1 AT4G00820 42.157 204 98 4 63 250 111 310 9.15e-40 149
MS.gene66881.t1 AT3G49260 44.211 190 91 4 75 250 112 300 1.23e-39 148
MS.gene66881.t1 AT3G49260 44.211 190 91 4 75 250 112 300 1.23e-39 148
MS.gene66881.t1 AT3G49260 44.211 190 91 4 75 250 112 300 1.23e-39 148
MS.gene66881.t1 AT3G49260 42.714 199 82 5 75 250 112 301 2.16e-39 147
MS.gene66881.t1 AT2G26410 42.373 177 93 5 83 253 147 320 1.75e-35 137
MS.gene66881.t1 AT2G26410 42.373 177 93 5 83 253 147 320 1.75e-35 137
MS.gene66881.t1 AT1G01110 41.530 183 92 3 83 250 120 302 7.05e-34 133
MS.gene66881.t1 AT3G59690 44.586 157 74 6 87 240 172 318 1.12e-31 127
MS.gene66881.t1 AT3G59690 44.586 157 74 6 87 240 172 318 1.12e-31 127
MS.gene66881.t1 AT4G10640 33.441 311 145 8 85 370 101 374 2.05e-28 116
MS.gene66881.t1 AT5G13460 34.146 205 116 6 47 242 68 262 5.07e-26 109
MS.gene66881.t1 AT2G43680 38.994 159 81 6 86 240 325 471 1.19e-25 110
MS.gene66881.t1 AT2G43680 38.994 159 81 6 86 240 324 470 1.35e-25 110
MS.gene66881.t1 AT2G43680 38.994 159 81 6 86 240 324 470 1.35e-25 110
MS.gene66881.t1 AT2G43680 38.994 159 81 6 86 240 324 470 1.35e-25 110
MS.gene66881.t1 AT2G43680 38.994 159 81 6 86 240 324 470 1.35e-25 110
MS.gene66881.t1 AT4G14750 68.657 67 21 0 83 149 104 170 3.89e-23 100
MS.gene66881.t1 AT4G14750 68.657 67 21 0 83 149 163 229 8.37e-23 100
MS.gene66881.t1 AT4G14750 68.657 67 21 0 83 149 163 229 8.99e-23 100
MS.gene66881.t1 AT4G23060 60.976 82 32 0 76 157 159 240 7.06e-22 98.2
MS.gene66881.t1 AT3G16490 66.154 65 22 0 83 147 106 170 1.19e-20 93.6
MS.gene66881.t1 AT5G07240 67.647 68 22 0 77 144 99 166 5.89e-20 91.7
MS.gene66881.t1 AT5G07240 67.647 68 22 0 77 144 145 212 8.10e-20 91.7
MS.gene66881.t1 AT1G51960 61.644 73 27 1 80 151 95 167 1.15e-19 90.1
MS.gene66881.t1 AT1G18840 47.778 90 43 1 65 150 86 175 1.38e-19 91.7
MS.gene66881.t1 AT1G18840 47.778 90 43 1 65 150 86 175 1.38e-19 91.7
MS.gene66881.t1 AT1G18840 47.778 90 43 1 65 150 86 175 1.38e-19 91.7
MS.gene66881.t1 AT1G19870 30.769 208 105 3 83 289 214 383 1.71e-19 91.7
MS.gene66881.t1 AT1G19870 30.769 208 105 3 83 289 31 200 2.00e-19 91.3
MS.gene66881.t1 AT1G74690 40.441 136 67 3 20 150 53 179 6.05e-19 89.7
MS.gene66881.t1 AT3G51380 64.615 65 23 0 81 145 34 98 7.99e-18 79.0
MS.gene66881.t1 AT5G62070 67.742 62 20 0 77 138 110 171 3.66e-17 83.2
MS.gene66881.t1 AT3G49380 64.615 65 23 0 86 150 112 176 4.83e-17 82.4
MS.gene66881.t1 AT4G29150 63.077 65 24 0 83 147 130 194 2.77e-16 80.5
MS.gene66881.t1 AT5G35670 34.921 189 107 6 83 265 159 337 1.16e-15 79.0
MS.gene66881.t1 AT1G14380 52.239 67 32 0 84 150 94 160 3.82e-15 78.2
MS.gene66881.t1 AT1G14380 52.239 67 32 0 84 150 94 160 3.82e-15 78.2
MS.gene66881.t1 AT1G14380 52.239 67 32 0 84 150 94 160 3.82e-15 78.2
MS.gene66881.t1 AT1G14380 52.239 67 32 0 84 150 94 160 4.80e-15 77.8
MS.gene66881.t1 AT1G14380 52.239 67 32 0 84 150 94 160 4.80e-15 77.8
MS.gene66881.t1 AT1G14380 52.239 67 32 0 84 150 94 160 4.80e-15 77.8
MS.gene66881.t1 AT1G14380 52.239 67 32 0 84 150 94 160 6.25e-15 77.4
MS.gene66881.t1 AT5G03960 38.889 126 74 2 86 208 110 235 5.46e-13 70.5
MS.gene66881.t1 AT5G03960 38.889 126 74 2 86 208 110 235 5.46e-13 70.5
MS.gene66881.t1 AT5G03960 38.889 126 74 2 86 208 109 234 5.53e-13 70.5
MS.gene66881.t1 AT2G02790 46.269 67 36 0 84 150 107 173 4.75e-11 65.1
MS.gene66881.t1 AT2G02790 46.269 67 36 0 84 150 107 173 4.75e-11 65.1
MS.gene66881.t1 AT2G02790 46.269 67 36 0 84 150 107 173 6.96e-11 64.7

Find 101 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGTCTCTTTAATATTT+TGG 0.074947 4.4:-51829406 None:intergenic
TGAACATTTGCATTAGATTT+TGG 0.157733 4.4:-51830932 None:intergenic
GTTAGATCTGGTAGGATATT+TGG 0.217923 4.4:-51831410 None:intergenic
GCTTGTGAGTTTCTCTCCTT+TGG 0.232536 4.4:-51831010 None:intergenic
ACAACGCTTGGATGAATATT+TGG 0.234812 4.4:-51830809 None:intergenic
AGGCAGCAGGCCGTTTCTTC+AGG 0.270335 4.4:+51830599 MS.gene66881:CDS
GAAGCACGCAAAAGCCTATA+AGG 0.279293 4.4:+51831446 MS.gene66881:CDS
AACAGCGTTTCGTGGATTTC+TGG 0.282468 4.4:+51828135 MS.gene66881:CDS
AGCTTAGGTTTATCCCTTAT+AGG 0.329649 4.4:-51831460 None:intergenic
GTGAAGTAGAAGGAGAATAA+TGG 0.331113 4.4:-51828045 None:intergenic
AATGGGCTTCAAGGTTTGAT+TGG 0.343344 4.4:-51828027 None:intergenic
AAAGCAGTTGGGGTTGGAAT+TGG 0.353714 4.4:+51830636 MS.gene66881:CDS
GAGAGTTCAGGCTCGTGTTC+GGG 0.366984 4.4:+51829012 MS.gene66881:CDS
GCAAGCTTTGGTGAGAGTTC+AGG 0.371238 4.4:+51829000 MS.gene66881:CDS
GTTGGAATTGGTTGGAAAGA+TGG 0.381054 4.4:+51830648 MS.gene66881:CDS
ATGGGCTTCAAGGTTTGATT+GGG 0.381657 4.4:-51828026 None:intergenic
GAAGAAACCAACTCAAAATC+TGG 0.385612 4.4:+51830965 MS.gene66881:CDS
TTACTGCATGGCCTCTTACA+AGG 0.407942 4.4:-51828946 None:intergenic
AAGGAGAATAATGGGCTTCA+AGG 0.408085 4.4:-51828036 None:intergenic
TGAGAGTTCAGGCTCGTGTT+CGG 0.416787 4.4:+51829011 MS.gene66881:CDS
TCCCCTCCTCCATTGAGCTT+AGG 0.419990 4.4:-51831475 None:intergenic
ATCAAATCACGAGCGAAGAA+TGG 0.421607 4.4:+51828095 MS.gene66881:CDS
GATGTTATGGATGGTAGAAA+TGG 0.422170 4.4:+51830743 MS.gene66881:CDS
TGAACCTGATAAAAGCAGTT+GGG 0.424024 4.4:+51830625 MS.gene66881:CDS
TGAAGTAGAAGGAGAATAAT+GGG 0.424231 4.4:-51828044 None:intergenic
AATGATGGTGCTGCACCTAT+TGG 0.424678 4.4:+51827983 MS.gene66881:CDS
GGCATATGCTCTAGCTCATC+AGG 0.427400 4.4:+51829455 MS.gene66881:CDS
TTTGAGTTGGTTTCTTCAAC+GGG 0.429692 4.4:-51830959 None:intergenic
TGCATTCAAACAGCGTTTCG+TGG 0.439864 4.4:+51828127 MS.gene66881:CDS
GATGGATGGCTGTACGTCCT+TGG 0.444202 4.4:+51830666 MS.gene66881:CDS
CAAAGCTCGTAGTGCTCTCC+TGG 0.445869 4.4:-51828900 None:intergenic
ATGGATGGCTGTACGTCCTT+GGG 0.447160 4.4:+51830667 MS.gene66881:CDS
AAACTCACAAGCAGATAAAC+AGG 0.449156 4.4:+51831021 MS.gene66881:CDS
TCTCCGTTGTATGCAAGCTT+TGG 0.449466 4.4:+51828988 MS.gene66881:CDS
GGTAGACGAAAATGATGTTA+TGG 0.450653 4.4:+51830730 MS.gene66881:CDS
AAGGCGTGTTCGCTTGTCAT+TGG 0.452023 4.4:+51829036 MS.gene66881:CDS
TGTCCCTTTCACGTTAGATC+TGG 0.453777 4.4:-51831422 None:intergenic
TCCACTTTGCAGTGGCAGGC+AGG 0.454817 4.4:+51830572 MS.gene66881:intron
AGCCAAAATATTAAAGAGAC+AGG 0.460505 4.4:+51829404 MS.gene66881:CDS
GCAGGCAGGATCAAGGCAGC+AGG 0.462311 4.4:+51830586 MS.gene66881:CDS
CTTGACATTAATACGAAGGA+TGG 0.470311 4.4:+51830701 MS.gene66881:CDS
CAACGGAATTCTTTCTCCGA+TGG 0.472036 4.4:-51827925 None:intergenic
TACTGCATGGCCTCTTACAA+GGG 0.472086 4.4:-51828945 None:intergenic
ACATGATCTACATCTCCAAT+AGG 0.472443 4.4:-51827998 None:intergenic
CTGATAAAAGCAGTTGGGGT+TGG 0.473450 4.4:+51830630 MS.gene66881:CDS
CAAAATGAGTTTGACAATGA+TGG 0.481901 4.4:+51827968 MS.gene66881:CDS
TCAAATCACGAGCGAAGAAT+GGG 0.482710 4.4:+51828096 MS.gene66881:CDS
TGTACTTGTTGTGAAGTAGA+AGG 0.484072 4.4:-51828055 None:intergenic
TTCAGGCTCGTGTTCGGGCA+AGG 0.490486 4.4:+51829017 MS.gene66881:CDS
AGCGTTGTCAGTCACAAAAC+CGG 0.494399 4.4:+51830824 MS.gene66881:CDS
CTACCAGATCTAACGTGAAA+GGG 0.494835 4.4:+51831419 MS.gene66881:CDS
CTTGTTTGGTACAGGAAGGT+TGG 0.497244 4.4:+51829349 MS.gene66881:intron
GAGAACAAACTCACCATGGT+TGG 0.502802 4.4:-51831065 None:intergenic
GAGCTTTGAAAGGATTGGTA+AGG 0.506231 4.4:+51828915 MS.gene66881:CDS
CAGTTGGGGTTGGAATTGGT+TGG 0.508731 4.4:+51830640 MS.gene66881:CDS
TTCTACTTCACAACAAGTAC+AGG 0.509033 4.4:+51828057 MS.gene66881:CDS
TTTAGCAGGGGTTGGTTCCG+GGG 0.509172 4.4:+51831378 MS.gene66881:intron
AGGCTTCAAGCCCTTGTAAG+AGG 0.511278 4.4:+51828935 MS.gene66881:CDS
AGGTTCAAATCCTGAAGAAA+CGG 0.515201 4.4:-51830609 None:intergenic
AAACCTAAGCTCAATGGAGG+AGG 0.518311 4.4:+51831472 MS.gene66881:CDS
AGGGATAAACCTAAGCTCAA+TGG 0.520197 4.4:+51831466 MS.gene66881:CDS
AAGCACGCAAAAGCCTATAA+GGG 0.522176 4.4:+51831447 MS.gene66881:CDS
AGAACAAACTCACCATGGTT+GGG 0.522573 4.4:-51831064 None:intergenic
ACTACGAGCTTTGAAAGGAT+TGG 0.522803 4.4:+51828910 MS.gene66881:CDS
GCCATCAGAAAGTGAAGGGC+CGG 0.529950 4.4:-51830843 None:intergenic
GTGTTAGTAGACTTGAACTG+AGG 0.533731 4.4:-51830773 None:intergenic
TGCAGTGGCAGGCAGGATCA+AGG 0.534616 4.4:+51830579 MS.gene66881:intron
ACCGGCCCTTCACTTTCTGA+TGG 0.540369 4.4:+51830842 MS.gene66881:CDS
GAACCTGATAAAAGCAGTTG+GGG 0.546214 4.4:+51830626 MS.gene66881:CDS
TCTTCCACTAGCAAGTCAGC+AGG 0.546756 4.4:+51830875 MS.gene66881:CDS
TTGAACCTGATAAAAGCAGT+TGG 0.552298 4.4:+51830624 MS.gene66881:CDS
ATATTTGGCTGTTTGAGCCC+CGG 0.556821 4.4:-51831395 None:intergenic
CCTACCAGATCTAACGTGAA+AGG 0.557151 4.4:+51831418 MS.gene66881:CDS
AGTTACACAACTGTGGGCGG+TGG 0.571814 4.4:-51831520 None:intergenic
GTGATTTGATGATTATGTGC+AGG 0.572761 4.4:-51828082 None:intergenic
ACCTAAGCTCAATGGAGGAG+GGG 0.573382 4.4:+51831474 MS.gene66881:CDS
GACGAAAATGATGTTATGGA+TGG 0.577697 4.4:+51830734 MS.gene66881:CDS
AGAGCACTACGAGCTTTGAA+AGG 0.590621 4.4:+51828905 MS.gene66881:CDS
CAAACCTGCTGACTTGCTAG+TGG 0.597084 4.4:-51830879 None:intergenic
ATGCATAGTTACACAACTGT+GGG 0.597446 4.4:-51831526 None:intergenic
AACCTAAGCTCAATGGAGGA+GGG 0.601091 4.4:+51831473 MS.gene66881:CDS
AGGCTAGCAAGTTTCGCCAT+CGG 0.603223 4.4:+51827909 MS.gene66881:CDS
GAATTGGTTGGAAAGATGGA+TGG 0.603840 4.4:+51830652 MS.gene66881:CDS
AAGATCTCAAAGTAATCCAA+AGG 0.605081 4.4:+51830994 MS.gene66881:CDS
CACAGCCATCAGAAAGTGAA+GGG 0.617780 4.4:-51830847 None:intergenic
TCACAGCCATCAGAAAGTGA+AGG 0.617863 4.4:-51830848 None:intergenic
TAATACGAAGGATGGAGTGA+AGG 0.620363 4.4:+51830709 MS.gene66881:CDS
CAAAATATTAAAGAGACAGG+AGG 0.633283 4.4:+51829407 MS.gene66881:CDS
CCTTTCACGTTAGATCTGGT+AGG 0.633476 4.4:-51831418 None:intergenic
TGGGCTTCAAGGTTTGATTG+GGG 0.636004 4.4:-51828025 None:intergenic
AGCAAAACGTGAGAGAGCCA+TGG 0.642186 4.4:+51829434 MS.gene66881:CDS
CGATTATCTCTTCCCAACCA+TGG 0.644366 4.4:+51831052 MS.gene66881:CDS
TCAAGAAAACGATTCTCCCA+AGG 0.647063 4.4:-51830683 None:intergenic
AATGCATAGTTACACAACTG+TGG 0.650428 4.4:-51831527 None:intergenic
TCACCAAAGCTTGCATACAA+CGG 0.650453 4.4:-51828991 None:intergenic
GATAAACCTAAGCTCAATGG+AGG 0.654380 4.4:+51831469 MS.gene66881:CDS
GGAAGGTTGGTGTGACAGTG+TGG 0.655505 4.4:+51829362 MS.gene66881:intron
CATAGTTACACAACTGTGGG+CGG 0.663558 4.4:-51831523 None:intergenic
AATTCCGTTGAAATTGACAA+CGG 0.663667 4.4:+51827938 MS.gene66881:CDS
ATGAGCTAGAGCATATGCCA+TGG 0.669679 4.4:-51829451 None:intergenic
GAAGGTTGGTGTGACAGTGT+GGG 0.697609 4.4:+51829363 MS.gene66881:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATGTTAATAAATAG+TGG - chr4.4:51828388-51828407 None:intergenic 10.0%
!!! ATTTTCTTTTCTATAAATTA+AGG + chr4.4:51829757-51829776 MS.gene66881:intron 10.0%
!!! GTTATTTTGTTTTATTAATA+TGG + chr4.4:51829148-51829167 MS.gene66881:intron 10.0%
!! GAAAGATTAATCAAATATAA+TGG - chr4.4:51829520-51829539 None:intergenic 15.0%
!! TAATAAAACAAAATAACCAT+GGG - chr4.4:51829145-51829164 None:intergenic 15.0%
!! TTAATAAAACAAAATAACCA+TGG - chr4.4:51829146-51829165 None:intergenic 15.0%
!!! AATTGCAAAGAAAATAATTT+TGG - chr4.4:51830378-51830397 None:intergenic 15.0%
!!! ACTAGAATTTCATTAATTTT+AGG - chr4.4:51830149-51830168 None:intergenic 15.0%
!!! CTAGAATTTCATTAATTTTA+GGG - chr4.4:51830148-51830167 None:intergenic 15.0%
!!! TTTTTCCTTATTAATATGAT+AGG - chr4.4:51830049-51830068 None:intergenic 15.0%
!! AATAAAACATTGCAAAATTG+GGG - chr4.4:51830328-51830347 None:intergenic 20.0%
!! ACACATTATTCAAAAAGATT+TGG - chr4.4:51831315-51831334 None:intergenic 20.0%
!! AGAATAAAACATTGCAAAAT+TGG - chr4.4:51830330-51830349 None:intergenic 20.0%
!! GAATAAAACATTGCAAAATT+GGG - chr4.4:51830329-51830348 None:intergenic 20.0%
!! GGTGATAATATAATACAATA+AGG - chr4.4:51831105-51831124 None:intergenic 20.0%
!! TAAAATTGCAAATTTCAAAG+AGG + chr4.4:51829671-51829690 MS.gene66881:intron 20.0%
!! TGAATAATGTGTTAGATTAA+TGG + chr4.4:51831323-51831342 MS.gene66881:intron 20.0%
!! TTATCTCTTTATACTTGAAT+AGG + chr4.4:51828252-51828271 MS.gene66881:intron 20.0%
!! TTATTCCCTTATATTATCTA+TGG + chr4.4:51830488-51830507 MS.gene66881:intron 20.0%
!! TTCATGAAATTAATAATCCT+TGG + chr4.4:51830171-51830190 MS.gene66881:intron 20.0%
!! TTTGCAATTATAAGTATGAA+GGG + chr4.4:51830389-51830408 MS.gene66881:intron 20.0%
!!! ATTACTTTTGCTTAGAATTT+GGG + chr4.4:51828315-51828334 MS.gene66881:intron 20.0%
!!! CAGAATAAGTTTTTAAGTTA+GGG - chr4.4:51828809-51828828 None:intergenic 20.0%
!!! TATTACTTTTGCTTAGAATT+TGG + chr4.4:51828314-51828333 MS.gene66881:intron 20.0%
!!! TCAGAATAAGTTTTTAAGTT+AGG - chr4.4:51828810-51828829 None:intergenic 20.0%
!!! TTATTTATCACAACATTTTG+AGG + chr4.4:51828181-51828200 MS.gene66881:intron 20.0%
! AAATTTACGATTCCATCTTA+TGG + chr4.4:51829479-51829498 MS.gene66881:intron 25.0%
! AAGTAATTACTTACATCTCA+CGG - chr4.4:51829625-51829644 None:intergenic 25.0%
! AATCATTTACTACTAGGTAA+GGG + chr4.4:51829913-51829932 MS.gene66881:intron 25.0%
! AATCCTAATCATTTACTACT+AGG + chr4.4:51829907-51829926 MS.gene66881:intron 25.0%
! ACGATCCTATCATATTAATA+AGG + chr4.4:51830041-51830060 MS.gene66881:intron 25.0%
! ATAAACTGTCTGATCAAAAT+TGG - chr4.4:51831210-51831229 None:intergenic 25.0%
! ATTTGCGAATTTAGTATGAT+CGG - chr4.4:51831244-51831263 None:intergenic 25.0%
! CAAGACAAAAAACTTAGAAA+TGG - chr4.4:51831355-51831374 None:intergenic 25.0%
! CCATCTTATGGAAATTAAAT+GGG + chr4.4:51829491-51829510 MS.gene66881:intron 25.0%
! CTTTGCAATTATAAGTATGA+AGG + chr4.4:51830388-51830407 MS.gene66881:intron 25.0%
! GTTTATTGAGTCATAGAATA+TGG + chr4.4:51829854-51829873 MS.gene66881:intron 25.0%
! TAAAATGCTTATATCTACCA+AGG + chr4.4:51828713-51828732 MS.gene66881:intron 25.0%
! TAAACATTTAGTTGCTAACA+AGG + chr4.4:51828836-51828855 MS.gene66881:intron 25.0%
! TAATCATTTACTACTAGGTA+AGG + chr4.4:51829912-51829931 MS.gene66881:intron 25.0%
! TCAAGTATAAAGAGATAAAG+AGG - chr4.4:51828250-51828269 None:intergenic 25.0%
! TCCATCTTATGGAAATTAAA+TGG + chr4.4:51829490-51829509 MS.gene66881:intron 25.0%
! TCTGATACCAACTTAAATTT+GGG + chr4.4:51828525-51828544 MS.gene66881:intron 25.0%
! TGTGTCCATAGATAATATAA+GGG - chr4.4:51830496-51830515 None:intergenic 25.0%
! TTACCTAGTAGTAAATGATT+AGG - chr4.4:51829913-51829932 None:intergenic 25.0%
! TTGTGTCCATAGATAATATA+AGG - chr4.4:51830497-51830516 None:intergenic 25.0%
!! AAACATATTTTTCCCATTGA+TGG - chr4.4:51828660-51828679 None:intergenic 25.0%
!! AATTGCTATTCTAGTATATG+TGG + chr4.4:51829556-51829575 MS.gene66881:intron 25.0%
!! ATGTTTTACCCTTAAAAATC+AGG + chr4.4:51828674-51828693 MS.gene66881:intron 25.0%
!! GCTATAAAATGTTTCTAAAC+AGG + chr4.4:51829782-51829801 MS.gene66881:intron 25.0%
!! GTTGGTTACATAATGTTTTA+GGG + chr4.4:51829719-51829738 MS.gene66881:intron 25.0%
!! TGAACATTTGCATTAGATTT+TGG - chr4.4:51830935-51830954 None:intergenic 25.0%
!! TGATATTTTCAATAATCAGC+AGG + chr4.4:51827889-51827908 MS.gene66881:CDS 25.0%
!! TTTTCTTGACATTAATACGA+AGG + chr4.4:51830697-51830716 MS.gene66881:CDS 25.0%
!!! TTACATAATGTTTTAGGGAA+AGG + chr4.4:51829724-51829743 MS.gene66881:intron 25.0%
!!! TTTTGTCTTGTATTTTAGCA+GGG + chr4.4:51831365-51831384 MS.gene66881:intron 25.0%
!!! TTTTTGTCTTGTATTTTAGC+AGG + chr4.4:51831364-51831383 MS.gene66881:intron 25.0%
AAATTTCAAAATGATCCCTC+AGG - chr4.4:51830243-51830262 None:intergenic 30.0%
AAGATCTCAAAGTAATCCAA+AGG + chr4.4:51830994-51831013 MS.gene66881:CDS 30.0%
AATTCCGTTGAAATTGACAA+CGG + chr4.4:51827938-51827957 MS.gene66881:CDS 30.0%
AATTGCAAATTTCAAAGAGG+AGG + chr4.4:51829674-51829693 MS.gene66881:intron 30.0%
AATTTCAAAATGATCCCTCA+GGG - chr4.4:51830242-51830261 None:intergenic 30.0%
AATTTGAAAATGAACTGCAG+AGG + chr4.4:51829962-51829981 MS.gene66881:intron 30.0%
AGCCAAAATATTAAAGAGAC+AGG + chr4.4:51829404-51829423 MS.gene66881:CDS 30.0%
ATACCAACTTAAATTTGGGT+TGG + chr4.4:51828529-51828548 MS.gene66881:intron 30.0%
ATCATTTACTACTAGGTAAG+GGG + chr4.4:51829914-51829933 MS.gene66881:intron 30.0%
CAAAATATTAAAGAGACAGG+AGG + chr4.4:51829407-51829426 MS.gene66881:CDS 30.0%
CAAAATGAGTTTGACAATGA+TGG + chr4.4:51827968-51827987 MS.gene66881:CDS 30.0%
CAACTGAAAATATGAACCAA+AGG - chr4.4:51830530-51830549 None:intergenic 30.0%
CATTTCAAGATAAACAAAGC+AGG - chr4.4:51828747-51828766 None:intergenic 30.0%
CTCTGATACCAACTTAAATT+TGG + chr4.4:51828524-51828543 MS.gene66881:intron 30.0%
CTTACAAACCAGTTTCATAA+GGG - chr4.4:51828354-51828373 None:intergenic 30.0%
GATGATATTTGTGAAGCATA+TGG + chr4.4:51830069-51830088 MS.gene66881:intron 30.0%
GTTCTATGATCATCTATCAT+TGG + chr4.4:51829823-51829842 MS.gene66881:intron 30.0%
TCTTACAAACCAGTTTCATA+AGG - chr4.4:51828355-51828374 None:intergenic 30.0%
TGAAGTAGAAGGAGAATAAT+GGG - chr4.4:51828047-51828066 None:intergenic 30.0%
TGTAATTCCATAGACGAAAT+TGG + chr4.4:51830295-51830314 MS.gene66881:intron 30.0%
TTAAAAATCAGGCATTACAG+TGG + chr4.4:51828685-51828704 MS.gene66881:intron 30.0%
TTCATTGACAAGAATTTGCA+CGG - chr4.4:51829944-51829963 None:intergenic 30.0%
! ACTGTAATGCCTGATTTTTA+AGG - chr4.4:51828686-51828705 None:intergenic 30.0%
! ATTACAAGCTTTTGGCAATT+TGG - chr4.4:51830281-51830300 None:intergenic 30.0%
! CCCATTTAATTTCCATAAGA+TGG - chr4.4:51829494-51829513 None:intergenic 30.0%
! CTCCTGTCTCTTTAATATTT+TGG - chr4.4:51829409-51829428 None:intergenic 30.0%
! CTGTAATGCCTGATTTTTAA+GGG - chr4.4:51828685-51828704 None:intergenic 30.0%
! TCTATGGAATTACAAGCTTT+TGG - chr4.4:51830289-51830308 None:intergenic 30.0%
! TTTTCCGTTGTCAATTTCAA+CGG - chr4.4:51827945-51827964 None:intergenic 30.0%
! TTTTGCTTAGAATTTGGGTA+GGG + chr4.4:51828320-51828339 MS.gene66881:intron 30.0%
!! CATACAAGTCAGTTTTGTAA+GGG - chr4.4:51828566-51828585 None:intergenic 30.0%
!! GGTTGGTTACATAATGTTTT+AGG + chr4.4:51829718-51829737 MS.gene66881:intron 30.0%
!!! ATAATGTTTTAGGGAAAGGT+TGG + chr4.4:51829728-51829747 MS.gene66881:intron 30.0%
!!! GCATTAGATTTTGGTTTAAC+AGG - chr4.4:51830926-51830945 None:intergenic 30.0%
!!! TAATGTTTTAGGGAAAGGTT+GGG + chr4.4:51829729-51829748 MS.gene66881:intron 30.0%
!!! TTTGTCTTGTATTTTAGCAG+GGG + chr4.4:51831366-51831385 MS.gene66881:intron 30.0%
!!! TTTTGAGTTGGTTTCTTCAA+CGG - chr4.4:51830963-51830982 None:intergenic 30.0%
AAACTCACAAGCAGATAAAC+AGG + chr4.4:51831021-51831040 MS.gene66881:CDS 35.0%
AATTAGAGCTCAATAGCATC+TGG - chr4.4:51829883-51829902 None:intergenic 35.0%
AATTGGAGAGTGATTCTTTG+TGG - chr4.4:51831193-51831212 None:intergenic 35.0%
ACAACGCTTGGATGAATATT+TGG - chr4.4:51830812-51830831 None:intergenic 35.0%
ACACAACACATTGTTTCCTT+TGG + chr4.4:51830511-51830530 MS.gene66881:intron 35.0%
ACAGTTTCCTTGTAAGTTAG+CGG + chr4.4:51831270-51831289 MS.gene66881:intron 35.0%
ACATGACACAAGTGATCAAA+AGG - chr4.4:51829262-51829281 None:intergenic 35.0%
ACATGATCTACATCTCCAAT+AGG - chr4.4:51828001-51828020 None:intergenic 35.0%
ACCACTTATAAACCCATTTG+CGG + chr4.4:51828599-51828618 MS.gene66881:intron 35.0%
ACCCGACTGCTAAAATATTA+GGG - chr4.4:51830120-51830139 None:intergenic 35.0%
AGCTTAGGTTTATCCCTTAT+AGG - chr4.4:51831463-51831482 None:intergenic 35.0%
AGGAGGTGGTTGATTAATTT+AGG + chr4.4:51829691-51829710 MS.gene66881:intron 35.0%
AGGTTCAAATCCTGAAGAAA+CGG - chr4.4:51830612-51830631 None:intergenic 35.0%
ATAAGGGAATAACAACTGAC+AGG - chr4.4:51830480-51830499 None:intergenic 35.0%
ATTGGAGAGTGATTCTTTGT+GGG - chr4.4:51831192-51831211 None:intergenic 35.0%
CAAAGCAGGAAAATAAACCT+TGG - chr4.4:51828733-51828752 None:intergenic 35.0%
CAAAGGGAATTATATGACCA+AGG - chr4.4:51830191-51830210 None:intergenic 35.0%
CAACAAATCTAACCAACTGT+GGG + chr4.4:51828859-51828878 MS.gene66881:intron 35.0%
CTTGACATTAATACGAAGGA+TGG + chr4.4:51830701-51830720 MS.gene66881:CDS 35.0%
GAAGAAACCAACTCAAAATC+TGG + chr4.4:51830965-51830984 MS.gene66881:CDS 35.0%
GACGAAAATGATGTTATGGA+TGG + chr4.4:51830734-51830753 MS.gene66881:CDS 35.0%
GATGTTATGGATGGTAGAAA+TGG + chr4.4:51830743-51830762 MS.gene66881:CDS 35.0%
GGAGGTGGTTGATTAATTTA+GGG + chr4.4:51829692-51829711 MS.gene66881:intron 35.0%
GGTAGACGAAAATGATGTTA+TGG + chr4.4:51830730-51830749 MS.gene66881:CDS 35.0%
GTGAAGTAGAAGGAGAATAA+TGG - chr4.4:51828048-51828067 None:intergenic 35.0%
GTGTATTTCTCGTACTTGTT+TGG + chr4.4:51829335-51829354 MS.gene66881:intron 35.0%
GTTAACTACCCTTATGAAAC+TGG + chr4.4:51828343-51828362 MS.gene66881:intron 35.0%
GTTAGATCTGGTAGGATATT+TGG - chr4.4:51831413-51831432 None:intergenic 35.0%
GTTCCAACCCAAATTTAAGT+TGG - chr4.4:51828535-51828554 None:intergenic 35.0%
TAAGGGAATAACAACTGACA+GGG - chr4.4:51830479-51830498 None:intergenic 35.0%
TAATTACTTACATCTCACGG+TGG - chr4.4:51829622-51829641 None:intergenic 35.0%
TACCCGACTGCTAAAATATT+AGG - chr4.4:51830121-51830140 None:intergenic 35.0%
TATCATTAGTCCTTCTCATC+AGG + chr4.4:51829579-51829598 MS.gene66881:intron 35.0%
TCAAAAATCACTGCAAGTGA+AGG - chr4.4:51829991-51830010 None:intergenic 35.0%
TCCTTAACACTTCCATCAAT+GGG + chr4.4:51828645-51828664 MS.gene66881:intron 35.0%
TGAACCTGATAAAAGCAGTT+GGG + chr4.4:51830625-51830644 MS.gene66881:CDS 35.0%
TGGTTGATTAATTTAGGGAC+TGG + chr4.4:51829697-51829716 MS.gene66881:intron 35.0%
TTCTACTTCACAACAAGTAC+AGG + chr4.4:51828057-51828076 MS.gene66881:CDS 35.0%
TTGAACCTGATAAAAGCAGT+TGG + chr4.4:51830624-51830643 MS.gene66881:CDS 35.0%
TTTGCTTAGAATTTGGGTAG+GGG + chr4.4:51828321-51828340 MS.gene66881:intron 35.0%
! CAAATGGGTTTATAAGTGGT+GGG - chr4.4:51828599-51828618 None:intergenic 35.0%
! CTTTTGCTTAGAATTTGGGT+AGG + chr4.4:51828319-51828338 MS.gene66881:intron 35.0%
! GTGATTTGATGATTATGTGC+AGG - chr4.4:51828085-51828104 None:intergenic 35.0%
! GTGGGTCTATTTTGTGTATT+AGG + chr4.4:51828877-51828896 MS.gene66881:intron 35.0%
! TCTATTTTGTGTATTAGGCC+AGG + chr4.4:51828882-51828901 MS.gene66881:intron 35.0%
! TGATTAATTTAGGGACTGGT+TGG + chr4.4:51829701-51829720 MS.gene66881:intron 35.0%
!! ACTGGTTTGTAAGATGATGA+CGG + chr4.4:51828361-51828380 MS.gene66881:intron 35.0%
!! ACTTAAATTTGGGTTGGAAC+TGG + chr4.4:51828535-51828554 MS.gene66881:intron 35.0%
!! CCATACAAGTCAGTTTTGTA+AGG - chr4.4:51828567-51828586 None:intergenic 35.0%
!! CCTTACAAAACTGACTTGTA+TGG + chr4.4:51828564-51828583 MS.gene66881:intron 35.0%
!! TGCTCTAGATGTTTAGTTCT+AGG - chr4.4:51828453-51828472 None:intergenic 35.0%
!! TGTACTTGTTGTGAAGTAGA+AGG - chr4.4:51828058-51828077 None:intergenic 35.0%
!! TTAAGAGTACCACATTGGAT+GGG - chr4.4:51828422-51828441 None:intergenic 35.0%
!! TTGAACTCCAGATTTTGAGT+TGG - chr4.4:51830975-51830994 None:intergenic 35.0%
!! TTTGAGTTGGTTTCTTCAAC+GGG - chr4.4:51830962-51830981 None:intergenic 35.0%
!!! AATATTTTAGCAGTCGGGTA+TGG + chr4.4:51830121-51830140 MS.gene66881:intron 35.0%
!!! AATGTTTTAGGGAAAGGTTG+GGG + chr4.4:51829730-51829749 MS.gene66881:intron 35.0%
!!! GTCCCTAATATTTTAGCAGT+CGG + chr4.4:51830115-51830134 MS.gene66881:intron 35.0%
!!! TCCCTAATATTTTAGCAGTC+GGG + chr4.4:51830116-51830135 MS.gene66881:intron 35.0%
AAGCACGCAAAAGCCTATAA+GGG + chr4.4:51831447-51831466 MS.gene66881:CDS 40.0%
ACACAAAATAGACCCACAGT+TGG - chr4.4:51828874-51828893 None:intergenic 40.0%
AGAACAAACTCACCATGGTT+GGG - chr4.4:51831067-51831086 None:intergenic 40.0%
AGGGATAAACCTAAGCTCAA+TGG + chr4.4:51831466-51831485 MS.gene66881:CDS 40.0%
AGTAAGCAGTACTATTCCCA+TGG + chr4.4:51829126-51829145 MS.gene66881:intron 40.0%
ATCAAATCACGAGCGAAGAA+TGG + chr4.4:51828095-51828114 MS.gene66881:CDS 40.0%
ATGGGCTTCAAGGTTTGATT+GGG - chr4.4:51828029-51828048 None:intergenic 40.0%
CAGTTTCCTTGTAAGTTAGC+GGG + chr4.4:51831271-51831290 MS.gene66881:intron 40.0%
CCACTTATAAACCCATTTGC+GGG + chr4.4:51828600-51828619 MS.gene66881:intron 40.0%
CTACCAGATCTAACGTGAAA+GGG + chr4.4:51831419-51831438 MS.gene66881:CDS 40.0%
CTACTATCTATCGGACCATT+CGG - chr4.4:51828480-51828499 None:intergenic 40.0%
CTCCTTAACACTTCCATCAA+TGG + chr4.4:51828644-51828663 MS.gene66881:intron 40.0%
GAAAGAGAACAAACTCACCA+TGG - chr4.4:51831072-51831091 None:intergenic 40.0%
GAACCTGATAAAAGCAGTTG+GGG + chr4.4:51830626-51830645 MS.gene66881:CDS 40.0%
GAATTGGTTGGAAAGATGGA+TGG + chr4.4:51830652-51830671 MS.gene66881:CDS 40.0%
GATAAACCTAAGCTCAATGG+AGG + chr4.4:51831469-51831488 MS.gene66881:CDS 40.0%
GCAACAAATCTAACCAACTG+TGG + chr4.4:51828858-51828877 MS.gene66881:intron 40.0%
GTGTTAGTAGACTTGAACTG+AGG - chr4.4:51830776-51830795 None:intergenic 40.0%
GTTGGAATTGGTTGGAAAGA+TGG + chr4.4:51830648-51830667 MS.gene66881:CDS 40.0%
TAATACGAAGGATGGAGTGA+AGG + chr4.4:51830709-51830728 MS.gene66881:CDS 40.0%
TACTATCTATCGGACCATTC+GGG - chr4.4:51828479-51828498 None:intergenic 40.0%
TCAAATCACGAGCGAAGAAT+GGG + chr4.4:51828096-51828115 MS.gene66881:CDS 40.0%
TCAAGAAAACGATTCTCCCA+AGG - chr4.4:51830686-51830705 None:intergenic 40.0%
TCACCAAAGCTTGCATACAA+CGG - chr4.4:51828994-51829013 None:intergenic 40.0%
TCTTATCCCGCTAACTTACA+AGG - chr4.4:51831280-51831299 None:intergenic 40.0%
TGCAAATTTCAAAGAGGAGG+TGG + chr4.4:51829677-51829696 MS.gene66881:intron 40.0%
TTCTCGTACTTGTTTGGTAC+AGG + chr4.4:51829341-51829360 MS.gene66881:intron 40.0%
! AATGGGCTTCAAGGTTTGAT+TGG - chr4.4:51828030-51828049 None:intergenic 40.0%
! GCAAATGGGTTTATAAGTGG+TGG - chr4.4:51828600-51828619 None:intergenic 40.0%
!! AAGGAGAATAATGGGCTTCA+AGG - chr4.4:51828039-51828058 None:intergenic 40.0%
!! ACTACGAGCTTTGAAAGGAT+TGG + chr4.4:51828910-51828929 MS.gene66881:CDS 40.0%
!! CAGCTTGTTTTCTTACTGCA+TGG - chr4.4:51828961-51828980 None:intergenic 40.0%
!! GAGCTTTGAAAGGATTGGTA+AGG + chr4.4:51828915-51828934 MS.gene66881:CDS 40.0%
!! GTGTGTTAAGAGTACCACAT+TGG - chr4.4:51828427-51828446 None:intergenic 40.0%
!! GTTAAGAGTACCACATTGGA+TGG - chr4.4:51828423-51828442 None:intergenic 40.0%
!! TCCCATTGATGGAAGTGTTA+AGG - chr4.4:51828649-51828668 None:intergenic 40.0%
!!! ATGTTTTAGGGAAAGGTTGG+GGG + chr4.4:51829731-51829750 MS.gene66881:intron 40.0%
!!! TCTTGTATTTTAGCAGGGGT+TGG + chr4.4:51831370-51831389 MS.gene66881:intron 40.0%
AAACCTAAGCTCAATGGAGG+AGG + chr4.4:51831472-51831491 MS.gene66881:CDS 45.0%
AAAGCAGTTGGGGTTGGAAT+TGG + chr4.4:51830636-51830655 MS.gene66881:CDS 45.0%
AACAGCGTTTCGTGGATTTC+TGG + chr4.4:51828135-51828154 MS.gene66881:CDS 45.0%
AACCTAAGCTCAATGGAGGA+GGG + chr4.4:51831473-51831492 MS.gene66881:CDS 45.0%
AAGTGTTAAGGAGTCCACCT+TGG - chr4.4:51828637-51828656 None:intergenic 45.0%
ACGGTGGAGCATAACAATCA+AGG - chr4.4:51829606-51829625 None:intergenic 45.0%
AGCGTTGTCAGTCACAAAAC+CGG + chr4.4:51830824-51830843 MS.gene66881:CDS 45.0%
AGTCCACCTTGGATGAGATA+AGG - chr4.4:51828626-51828645 None:intergenic 45.0%
AGTCGATGAGATTGACGCAA+AGG - chr4.4:51830208-51830227 None:intergenic 45.0%
ATATTTGGCTGTTTGAGCCC+CGG - chr4.4:51831398-51831417 None:intergenic 45.0%
ATGAGATAAGGCCCGCAAAT+GGG - chr4.4:51828614-51828633 None:intergenic 45.0%
ATGAGCTAGAGCATATGCCA+TGG - chr4.4:51829454-51829473 None:intergenic 45.0%
ATGGTCCGATAGATAGTAGG+TGG + chr4.4:51828481-51828500 MS.gene66881:intron 45.0%
CAACGGAATTCTTTCTCCGA+TGG - chr4.4:51827928-51827947 None:intergenic 45.0%
CAATCAAGGACCTGATGAGA+AGG - chr4.4:51829592-51829611 None:intergenic 45.0%
CACAGCCATCAGAAAGTGAA+GGG - chr4.4:51830850-51830869 None:intergenic 45.0%
CCTACCAGATCTAACGTGAA+AGG + chr4.4:51831418-51831437 MS.gene66881:CDS 45.0%
CCTTTCACGTTAGATCTGGT+AGG - chr4.4:51831421-51831440 None:intergenic 45.0%
CGAATGGTCCGATAGATAGT+AGG + chr4.4:51828478-51828497 MS.gene66881:intron 45.0%
CGATTATCTCTTCCCAACCA+TGG + chr4.4:51831052-51831071 MS.gene66881:CDS 45.0%
CGTACTTGTTTGGTACAGGA+AGG + chr4.4:51829345-51829364 MS.gene66881:intron 45.0%
CTGATAAAAGCAGTTGGGGT+TGG + chr4.4:51830630-51830649 MS.gene66881:CDS 45.0%
CTTGTTTGGTACAGGAAGGT+TGG + chr4.4:51829349-51829368 MS.gene66881:intron 45.0%
GAAGCACGCAAAAGCCTATA+AGG + chr4.4:51831446-51831465 MS.gene66881:CDS 45.0%
GAGAACAAACTCACCATGGT+TGG - chr4.4:51831068-51831087 None:intergenic 45.0%
GCTTGTGAGTTTCTCTCCTT+TGG - chr4.4:51831013-51831032 None:intergenic 45.0%
GTACCACATTGGATGGGATA+AGG - chr4.4:51828416-51828435 None:intergenic 45.0%
GTCGATGAGATTGACGCAAA+GGG - chr4.4:51830207-51830226 None:intergenic 45.0%
TACTGCATGGCCTCTTACAA+GGG - chr4.4:51828948-51828967 None:intergenic 45.0%
TAGGTGGCCCAACAAATCAT+GGG + chr4.4:51828497-51828516 MS.gene66881:intron 45.0%
TCACAGCCATCAGAAAGTGA+AGG - chr4.4:51830851-51830870 None:intergenic 45.0%
TCGATCGCCAATTTCGTCTA+TGG - chr4.4:51830305-51830324 None:intergenic 45.0%
TCTCCGTTGTATGCAAGCTT+TGG + chr4.4:51828988-51829007 MS.gene66881:CDS 45.0%
TGCATTCAAACAGCGTTTCG+TGG + chr4.4:51828127-51828146 MS.gene66881:CDS 45.0%
TGGGCTTCAAGGTTTGATTG+GGG - chr4.4:51828028-51828047 None:intergenic 45.0%
TGTCCCTTTCACGTTAGATC+TGG - chr4.4:51831425-51831444 None:intergenic 45.0%
TTACTGCATGGCCTCTTACA+AGG - chr4.4:51828949-51828968 None:intergenic 45.0%
TTGGGCCACCTACTATCTAT+CGG - chr4.4:51828489-51828508 None:intergenic 45.0%
! AGAGCCTACCCATGATTTGT+TGG - chr4.4:51828508-51828527 None:intergenic 45.0%
! CCCGCAAATGGGTTTATAAG+TGG - chr4.4:51828603-51828622 None:intergenic 45.0%
! GTTTTGTGACTGACAACGCT+TGG - chr4.4:51830824-51830843 None:intergenic 45.0%
! TCCTCTTTTCCACTTTGCAG+TGG + chr4.4:51830564-51830583 MS.gene66881:intron 45.0%
!! AATGATGGTGCTGCACCTAT+TGG + chr4.4:51827983-51828002 MS.gene66881:CDS 45.0%
!! ACTAAGTTGATCGACCCTGA+GGG + chr4.4:51830225-51830244 MS.gene66881:intron 45.0%
!! AGAGCACTACGAGCTTTGAA+AGG + chr4.4:51828905-51828924 MS.gene66881:CDS 45.0%
!! CAACCCCAACTGCTTTTATC+AGG - chr4.4:51830632-51830651 None:intergenic 45.0%
!! GAGCCTACCCATGATTTGTT+GGG - chr4.4:51828507-51828526 None:intergenic 45.0%
!!! ATTTTAGCAGGGGTTGGTTC+CGG + chr4.4:51831376-51831395 MS.gene66881:intron 45.0%
!!! ATTTATTAACATATATTTTT+AGG + chr4.4:51828390-51828409 MS.gene66881:intron 5.0%
AAGGCGTGTTCGCTTGTCAT+TGG + chr4.4:51829036-51829055 MS.gene66881:CDS 50.0%
ACCTAAGCTCAATGGAGGAG+GGG + chr4.4:51831474-51831493 MS.gene66881:CDS 50.0%
AGCAAAACGTGAGAGAGCCA+TGG + chr4.4:51829434-51829453 MS.gene66881:CDS 50.0%
AGGCTAGCAAGTTTCGCCAT+CGG + chr4.4:51827909-51827928 MS.gene66881:CDS 50.0%
AGGCTTCAAGCCCTTGTAAG+AGG + chr4.4:51828935-51828954 MS.gene66881:CDS 50.0%
ATGGATGGCTGTACGTCCTT+GGG + chr4.4:51830667-51830686 MS.gene66881:CDS 50.0%
CAGTTGGGGTTGGAATTGGT+TGG + chr4.4:51830640-51830659 MS.gene66881:CDS 50.0%
GATGAGATAAGGCCCGCAAA+TGG - chr4.4:51828615-51828634 None:intergenic 50.0%
GATGATGTTAGCACTCGCAG+AGG - chr4.4:51831126-51831145 None:intergenic 50.0%
GCCACTGCAAAGTGGAAAAG+AGG - chr4.4:51830568-51830587 None:intergenic 50.0%
GTAGGTGGCCCAACAAATCA+TGG + chr4.4:51828496-51828515 MS.gene66881:intron 50.0%
TCTTCCACTAGCAAGTCAGC+AGG + chr4.4:51830875-51830894 MS.gene66881:CDS 50.0%
TGAGAGTTCAGGCTCGTGTT+CGG + chr4.4:51829011-51829030 MS.gene66881:CDS 50.0%
TGGCCCAACAAATCATGGGT+AGG + chr4.4:51828501-51828520 MS.gene66881:intron 50.0%
! AGGCCTTATCCCATCCAATG+TGG + chr4.4:51828410-51828429 MS.gene66881:intron 50.0%
! CATCTAGAGCATGACCCGAA+TGG + chr4.4:51828462-51828481 MS.gene66881:intron 50.0%
! CTTTTCCACTTTGCAGTGGC+AGG + chr4.4:51830568-51830587 MS.gene66881:intron 50.0%
! GCAAGCTTTGGTGAGAGTTC+AGG + chr4.4:51829000-51829019 MS.gene66881:CDS 50.0%
! GGCATATGCTCTAGCTCATC+AGG + chr4.4:51829455-51829474 MS.gene66881:CDS 50.0%
!! CAAACCTGCTGACTTGCTAG+TGG - chr4.4:51830882-51830901 None:intergenic 50.0%
!! GAAGGTTGGTGTGACAGTGT+GGG + chr4.4:51829363-51829382 MS.gene66881:CDS 50.0%
!! GACTAAGTTGATCGACCCTG+AGG + chr4.4:51830224-51830243 MS.gene66881:intron 50.0%
!!! TTTTAGCAGGGGTTGGTTCC+GGG + chr4.4:51831377-51831396 MS.gene66881:intron 50.0%
ACCGGCCCTTCACTTTCTGA+TGG + chr4.4:51830842-51830861 MS.gene66881:CDS 55.0%
CAAAGCTCGTAGTGCTCTCC+TGG - chr4.4:51828903-51828922 None:intergenic 55.0%
GAGAGTTCAGGCTCGTGTTC+GGG + chr4.4:51829012-51829031 MS.gene66881:CDS 55.0%
GATGGATGGCTGTACGTCCT+TGG + chr4.4:51830666-51830685 MS.gene66881:CDS 55.0%
GCCATCAGAAAGTGAAGGGC+CGG - chr4.4:51830846-51830865 None:intergenic 55.0%
TCCCCTCCTCCATTGAGCTT+AGG - chr4.4:51831478-51831497 None:intergenic 55.0%
! GGGCCTTATCTCATCCAAGG+TGG + chr4.4:51828620-51828639 MS.gene66881:intron 55.0%
! TGCGGGCCTTATCTCATCCA+AGG + chr4.4:51828617-51828636 MS.gene66881:intron 55.0%
!! GGAAGGTTGGTGTGACAGTG+TGG + chr4.4:51829362-51829381 MS.gene66881:intron 55.0%
!! TTTAGCAGGGGTTGGTTCCG+GGG + chr4.4:51831378-51831397 MS.gene66881:intron 55.0%
AGGCAGCAGGCCGTTTCTTC+AGG + chr4.4:51830599-51830618 MS.gene66881:CDS 60.0%
TCCACTTTGCAGTGGCAGGC+AGG + chr4.4:51830572-51830591 MS.gene66881:intron 60.0%
TCCTGCCTGCCACTGCAAAG+TGG - chr4.4:51830576-51830595 None:intergenic 60.0%
TGCAGTGGCAGGCAGGATCA+AGG + chr4.4:51830579-51830598 MS.gene66881:intron 60.0%
TTCAGGCTCGTGTTCGGGCA+AGG + chr4.4:51829017-51829036 MS.gene66881:CDS 60.0%
GCAGGCAGGATCAAGGCAGC+AGG + chr4.4:51830586-51830605 MS.gene66881:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 51827863 51831540 51827863 ID=MS.gene66881
chr4.4 mRNA 51827863 51831540 51827863 ID=MS.gene66881.t1;Parent=MS.gene66881
chr4.4 exon 51827863 51828156 51827863 ID=MS.gene66881.t1.exon1;Parent=MS.gene66881.t1
chr4.4 CDS 51827863 51828156 51827863 ID=cds.MS.gene66881.t1;Parent=MS.gene66881.t1
chr4.4 exon 51828899 51829126 51828899 ID=MS.gene66881.t1.exon2;Parent=MS.gene66881.t1
chr4.4 CDS 51828899 51829126 51828899 ID=cds.MS.gene66881.t1;Parent=MS.gene66881.t1
chr4.4 exon 51829363 51829476 51829363 ID=MS.gene66881.t1.exon3;Parent=MS.gene66881.t1
chr4.4 CDS 51829363 51829476 51829363 ID=cds.MS.gene66881.t1;Parent=MS.gene66881.t1
chr4.4 exon 51830584 51831073 51830584 ID=MS.gene66881.t1.exon4;Parent=MS.gene66881.t1
chr4.4 CDS 51830584 51831073 51830584 ID=cds.MS.gene66881.t1;Parent=MS.gene66881.t1
chr4.4 exon 51831386 51831540 51831386 ID=MS.gene66881.t1.exon5;Parent=MS.gene66881.t1
chr4.4 CDS 51831386 51831540 51831386 ID=cds.MS.gene66881.t1;Parent=MS.gene66881.t1
Gene Sequence

>MS.gene66881

ATGTTCTTCAAAAATAAAATAATATTTGATATTTTCAATAATCAGCAGGCTAGCAAGTTTCGCCATCGGAGAAAGAATTCCGTTGAAATTGACAACGGAAAACTTCAAAATGAGTTTGACAATGATGGTGCTGCACCTATTGGAGATGTAGATCATGTGAATCCCCAATCAAACCTTGAAGCCCATTATTCTCCTTCTACTTCACAACAAGTACAGGATCCTGCACATAATCATCAAATCACGAGCGAAGAATGGGCAGCAATATGCATTCAAACAGCGTTTCGTGGATTTCTGGTAATTTATCACATCATTTTGTTTTTATTTATCACAACATTTTGAGGATTTCTTGCTGTATTGATTTGATAACATTTACTGTTTTTTCTTCCTCTTTATCTCTTTATACTTGAATAGGATATCTTGTTCTTTGTTTTGTATGCTATGTTTTTCTTTGTATTACTTTTGCTTAGAATTTGGGTAGGGGTTAACTACCCTTATGAAACTGGTTTGTAAGATGATGACGGTCCACTATTTATTAACATATATTTTTAGGCCTTATCCCATCCAATGTGGTACTCTTAACACACACGCCTAGAACTAAACATCTAGAGCATGACCCGAATGGTCCGATAGATAGTAGGTGGCCCAACAAATCATGGGTAGGCTCTGATACCAACTTAAATTTGGGTTGGAACTGGCTCAACCCTTACAAAACTGACTTGTATGGTGAGAGCTGCCCACCACTTATAAACCCATTTGCGGGCCTTATCTCATCCAAGGTGGACTCCTTAACACTTCCATCAATGGGAAAAATATGTTTTACCCTTAAAAATCAGGCATTACAGTGGCAGACTAAAATGCTTATATCTACCAAGGTTTATTTTCCTGCTTTGTTTATCTTGAAATGCACTTCATATAAATGTGATATGTTTTTTTTTTGCTTTAACCCTAACTTAAAAACTTATTCTGATCAGTTTAAACATTTAGTTGCTAACAAGGCAACAAATCTAACCAACTGTGGGTCTATTTTGTGTATTAGGCCAGGAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAAGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGAGTTCAGGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGTCATTGGAAAGTCAAACAGAACAACAGAAACTTCAGCAACAGCTTGTAAACGAAGCTCGTGTTCGAGAAATTGAAGTAAGCAGTACTATTCCCATGGTTATTTTGTTTTATTAATATGGAATATTTTTGTCTCTTTCATGATTATTTATTTATTTTTATCTAGAGCTGAGTATTGAAAAATTAAGCTTTATAGATTCGACGTAGCTTCCTTTTGATCACTTGTGTCATGTTACAAGATTGTACAACTTTACATAATAGTGAGCACTGAGCAGCAACTTATGTTGTGTATTTCTCGTACTTGTTTGGTACAGGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATATTAAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGGTAAATTTACGATTCCATCTTATGGAAATTAAATGGGCAGCCATTATATTTGATTAATCTTTCTGTAACTTGTATGAGTAATTGCTATTCTAGTATATGTGGTATCATTAGTCCTTCTCATCAGGTCCTTGATTGTTATGCTCCACCGTGAGATGTAAGTAATTACTTGCTATGTGAGTATTTGAAGTTGAATCTAAAATTGCAAATTTCAAAGAGGAGGTGGTTGATTAATTTAGGGACTGGTTGGTTACATAATGTTTTAGGGAAAGGTTGGGGGCTTATTTTCTTTTCTATAAATTAAGGAAGCTATAAAATGTTTCTAAACAGGAATTAGTGTGACTGAAATGTTCTATGATCATCTATCATTGGAAGCTTCTGTTTATTGAGTCATAGAATATGGAAACCAGATGCTATTGAGCTCTAATTTCACAATCCTAATCATTTACTACTAGGTAAGGGGAAAACCGTGCAAATTCTTGTCAATGAATTTGAAAATGAACTGCAGAGGCATCCTTCACTTGCAGTGATTTTTGATGTGTCTATTTTAATCAAGAATGATACGATACGATCCTATCATATTAATAAGGAAAAAGATGATATTTGTGAAGCATATGGTGTAGATATATGACACAGATTTAGTCCCTAATATTTTAGCAGTCGGGTATGGTCCCTAAAATTAATGAAATTCTAGTTATTCATGAAATTAATAATCCTTGGTCATATAATTCCCTTTGCGTCAATCTCATCGACTAAGTTGATCGACCCTGAGGGATCATTTTGAAATTTTGTTAACTTAAGAAACCAAATTGCCAAAAGCTTGTAATTCCATAGACGAAATTGGCGATCGACCCCAATTTTGCAATGTTTTATTCTAATGTACATGATAAGACACGTTTTTCCAAAATTATTTTCTTTGCAATTATAAGTATGAAGGGTGATTGCAAAGAAAACTGAATTTTTGAGATACTATTTTGTCTAACTGAATTTTAATATTGCTGTCCCTGTCAGTTGTTATTCCCTTATATTATCTATGGACACAACACATTGTTTCCTTTGGTTCATATTTTCAGTTGTGAAATATTTTTGTTCCTCTTTTCCACTTTGCAGTGGCAGGCAGGATCAAGGCAGCAGGCCGTTTCTTCAGGATTTGAACCTGATAAAAGCAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGTCCTTGGGAGAATCGTTTTCTTGACATTAATACGAAGGATGGAGTGAAGGTAGACGAAAATGATGTTATGGATGGTAGAAATGGAATCAGACCTCAGTTCAAGTCTACTAACACAAAATCGAATCTGCCAAATATTCATCCAAGCGTTGTCAGTCACAAAACCGGCCCTTCACTTTCTGATGGCTGTGATTCTTCTTCCACTAGCAAGTCAGCAGGTTTGCTAGAGACATCAAATACACAACCTGTTAAACCAAAATCTAATGCAAATGTTCAAAATCCCGTTGAAGAAACCAACTCAAAATCTGGAGTTCAAAGATCTCAAAGTAATCCAAAGGAGAGAAACTCACAAGCAGATAAACAGGCGAAAAAACGATTATCTCTTCCCAACCATGGTGAGTTTGTTCTCTTTCTCTGCATTGTCCTTATTGTATTATATTATCACCTCTGCGAGTGCTAACATCATCTAAGTTTGCTTAACATAAAACATGATCACAAATATTTTCTAAACCCACAAAGAATCACTCTCCAATTTTGATCAGACAGTTTATGTAATTATCTTCCGATCATACTAAATTCGCAAATGATGATACAGTTTCCTTGTAAGTTAGCGGGATAAGAAGCATGTTTTTGCCAAATCTTTTTGAATAATGTGTTAGATTAATGGAACATGCCATTTCTAAGTTTTTTGTCTTGTATTTTAGCAGGGGTTGGTTCCGGGGCTCAAACAGCCAAATATCCTACCAGATCTAACGTGAAAGGGACACGAAGCACGCAAAAGCCTATAAGGGATAAACCTAAGCTCAATGGAGGAGGGGATGCAAATCTTAATAAATCTGTTCCACCGCCCACAGTTGTGTAA
Protein sequence

>MS.gene66881.t1

MFFKNKIIFDIFNNQQASKFRHRRKNSVEIDNGKLQNEFDNDGAAPIGDVDHVNPQSNLEAHYSPSTSQQVQDPAHNHQITSEEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLSLESQTEQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINTKDGVKVDENDVMDGRNGIRPQFKSTNTKSNLPNIHPSVVSHKTGPSLSDGCDSSSTSKSAGLLETSNTQPVKPKSNANVQNPVEETNSKSGVQRSQSNPKERNSQADKQAKKRLSLPNHGVGSGAQTAKYPTRSNVKGTRSTQKPIRDKPKLNGGGDANLNKSVPPPTVV